Resource Type:
Gene
Organism:
Name:
DCAR_011176
Identifier:
DCAR_011176.gene
Locus Tag:
DCAR_011176
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.
Cross Reference:
| PRGdb |  |
|---|
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_011176, is a part of gene, DCAR_011176. |
| The genetic_marker, MK003778 K1222, is located in gene, DCAR_011176. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_011176 | DCAR_011176.mRNA | mRNA | DCARv2_Chr3:33377610..33379422 |
Sequence:
ACCTAGTTCACGCAGAATTGCTGAAGTTCTCCCTTGTAGTGAGCTGTAAA
GTAGGAGAAGTTACATAACAGTCAACTTTCAATGTTGTAAATTAAACTAA
GTTAGTTAGGAAGAGTCAATTCAACCTCAATTAACAATTATCATACGCCT
CTACGCGTTAAAAGTTTCCACATTCCATAGTAAAATGATTCAATTCAAAG
CATGAAAAGACAAAGTCAATGCCCCAGCCACCGAAGCCCACCCCCACAAT
CTATATTCTCATCCAACACTTGATTCAGGACTTTTCTCAAACACATGGTG
ATCATCCCCACAAACCCTAATTCCCTGTAACAACAATCACCATGACCTCC
ACCCCTCTTGTAAAACCTCTTCTCTTAGCTTGTTTTGTTATATCCTGTAT
CTATACATCTGTAATTGCTGAGGATGATGTGACTTGCTTGCAAGGGTTTA
AAGATTCAATTCAGGATGTAGATAATAAGCTATTTGAATGGAGCTTTGGT
AATACAACTGTTGGGTACATCTGTAAGTACACTGGAGTCACTTGTTGGAA
TGATCGTGAGAATCGTGTTGTAAGTCTCGAATTACGGGAGTTGAATCTTG
CTGGTCAGTTACCGAAGGCGTTACAATCTTGTCATAATAACTTGCAAACT
CTTGTGTTGGCTGGTAATAACTTTTCGGGTTCAATACCGGATAAGATTTG
TAGTTGGTTGCCTTTTTTGAGTACTTTAGATTTATCGGGTAATAAGTTTG
TTGGATCAATACCGGCGTCGTTGGCTGATTGTACTTATTTGAATAATCTT
ATATTAAGTGATAATCAGCTGTCGGGAGAGATACCTGTTCAGTTAACTAG
TTTGAATCGGCTTAAGAAGTTTTCTGTTTCAAATAATGCTTTGAAAGGGA
CGGTTCCATCCGCGTTTAGTAAATTTGATGAATCAGATTTTAGTGGGAAT
AGTGGACTTTGCGGTGGACCGTTGAAGAAGTGTGGTGGTTTGAGTAAGAA
GAATCTTGCGATTATTATTGCGGCTGGTGTGCTCGGTGCAGTTGGATCGT
TGTTGTTAGGGTTTGGGTTGTGGTGGTGGTGTTTGAGGTCAAATAGGAGG
AAGAAAGGGAGCGGATATGGGGGAGAAGATAGTGAGAGTTGGGTTGAGAA
GTTGAGGGCTCATAAGCTTGTTCAGGTTTCTTTGTTTCAGAAACCGCTTG
TGAAGGTCAGGTTGGTGGATTTGATGGCTGCCACAAATAATTTTGATGGA
GCGAGTGTTATTATAACTGCTAGGACTGGAACAACCTATAAGGCTGTTCT
TCCTGATGGGTCTGCACTGGCAATTAAGCGGCTAAGTAGGTGTAAGCTGA
GTGAGAGGCAATTTGGTTTTGAAATGAATAGATTGGGGCAGCTTAGGCAT
CCAAATCTAACTCCATTATTGGGTTATTGCTTGGTGGAAGACGAGAAGCT
TTTGGTATATAAGTACATGTCTAACGGAACATTGTATTCAATGTTGAATG
GGGGGAATGCTAGTGAGCTAGACTGGGAAACCAGGTTTAGAATTGGTTTG
GGTGCTGCAAGGGGGCTTGCTTGGCTTCATCATGGGTGTTATCCTTCTAT
ATTGCACCAGAATATTAGCTCTAATATGATACTCTTGGATGAAGACTTTG
ATGCTCGTATAATGGATGTTGGATTGGCTAAGCTTATGACATATTCGGAT
CCCAATGAGCGTGGCCTTGTAAATGGAGAGTTGGGTGAGCTTGGTTATGT
AGCTCCAGAGTACTCGAGCACAATGGCTGCTTCTGGAAAAGGGGACGTTT
ACAGTCTTGGGGTAGTGTTTTTGGAGTTGGCTACTGGTCAGAGATGTCTT
GAAGTTAGTGGTGCTGAAGAAGGATTTAAGGGAAATTTGGTGGATTGGGT
GAATCACCTTTCTGTTTCTGGTCGAATTAAAGATGCAATTGATAAACGGC
TCCGTGGAAGGAAACATGATGAAGACATTGAACAGTTTTTGAGAATTGCA
TGCCATTGTGTGGAAACTGTGCCCAAAGATAGGTGGTCAATGTTCAAGGT
CTATGAATCTCTGAGGATTATTGCAGAGGAACATGGCTTCTCGGAACAAT
ATGATGAATTTCCATTGCTTTTTGGCAAAGAAGATATGGATAAGGTAATA
TAGTTACTGTTGCTGAAAGGTGTTGTAAGCATGAAAATGTGGCGTAAATG
TTCTCTGGTAATTCCTGCATCATGTGGTAAGTACTCAGACTATCGATGTA
TCTTATCTAAATCCCGCTTTTGTCTTCTTTCTGTAATACAATTCTATATA
TCAGGTATAACTGTACTATACATTAGGAATTTTAATATGCTTTTCCTATT
TATGAAATTATTGTTGTCTGCTTGTGTGCAGTGGGAAATGAAACTTAATT
TCCTTATGTTTGTTATTTAGTTATCTTTTTGTAAGCTTGTGAAATTCAAG
ATGAAGTTCATTCATTAGATTTAAGCCTCAACCTAGAAATGGACTGGTAA
TTGTCGATCCCGTCATAGTTGTCTTAAAATAATCAATATGGTTTTGGCCA
CACTGAATAGAAAAACCCTCTATAGCTGTTTGCCTGCGCTTTAAGCCCAG
GCTTAAAGCCATTTTTGACTTTAAGCTGAATATTTTCTGTTTGTGTAATT
AACCAGAAGCCTACTTAAAGTTAAAAATAAGCCGGAAACCGACCTAAAGT
CATAAGTTGGCAGGATGTACTTTTTTGTACAACTTATTTCATTTTTTATA
TTTTTTTTTTAAATATAAGTCAACTTCAACACTAAAATAAATAATTTATC
AAATTTATGTTTATTATTACAGTTTTAATAATCCATAAGTCACCTATAAT
ATAAAATTTATTCAAACAGACAATTTAAGTCGAGGGCGTGTCACATTAAG
ACATTAAGTCAGTATAAGTCATAAGTCATTTTATTTTAAGGCTAACAAAC
GGGCTAGTATAGACACTTGAATAGTTTGCTTTCTGACACAAGTACATGTT
GCTTTTAGATTCGAAGTATCTATTTCTTTGTATGTACCACACATATACAT
ATGTGTCTGTCTATGCAACCACTTGCATATTATATTTATGCAGATTTTGT
GAGTCCAACACATAGTAAAAATTATATGTTGAATTCTAGAGCCATTATGG
TTCTATGTTGAACTTTTGCTGCTTTACATATATCTATGCTTTTGTGCACC
AAAAATTTTGTTCTGGTTTAATTATCCGTTATGTGACTGTTCCCTACTGC
TAGTGTTGATCTGAATACTCATTTGAAAATAAGTCTTGCATGCTCTTAAA
TTTTTTTCAAAGGCGTAACATATTTTCACCATCAATGAGTTCAAGCATAT
ATATATGTAGCCTAATTAAACCACCAGCATAACGTTTCACAACGCTCATC
ATATATATATGAATTACAGATGGAGGGTGATGGCACAATCAATTATAGCA
TATTTAGAACTATTTTATGGGGTTTCACTTGGCTAACATTATATAATATA
GGGAACACAAAGAATGTGAACATGATTTATGTGTATGTCAGTGAATACTT
CATGATTCTCTTAGAAAACATTAAAACTGATATTTATTTTGTTGGATTTC
TAATTAATGGACCTGTGGCATACTTGGTCTAAATTTATTCTTTAGGATTT
TATTTTTGAGCAAGTGTTACATTTAGTTAAAATTCAATATAATAATAACT
AGGAAGAATGTAAGATAAATAATTTTCTCAAATGAACTAGTATTGATTGA
GAGTAGTCAGCAAAGTTATTTTGAAGGATTCAGGAAGGCAGAATAATGTA
AAACATAGTACTAAGGGGTTGAGGGTTATTATTAAAGTTAAAATCTGAAC
CCATTTCATTCTGATCCTGTAGTTAAAACCAACTAATTATCTACTCTCTT
GATTTATCAGGTATCTAGGCTGCCGCCTGGACCATGATAATCCTAAGAAC
CAATTAAACCATCTAGGATATTTTTGTTTCAGGGGGTTACTAAATCAAAA
TTTTTGGGATCATAGTCCTTTACATTTAGAATAAATAAGGTGATAGTATG
GGGATTAAAGTAATCCAAAGCAAACATACCCCTATTCTTAATCTATGTAT
TATCATATCACAGAGTTAAGTATCTGATAGATTTCGTATATTCTTAAAAA
AAACCAAATGGTGCTTCTTTACCCGTTCAAATCATATGAAATGGACATTT
TACTTGATTTTAGCACCAGCAGAACTTAATAGAAATTGCAGGAAGCTGCA
TAGGTATTAGGTGGGATTTTCTGAGAATGTGTGATCAGTCATTTCAGTCT
GCAAGCAGAGAAAATAAATCTACTTTCCATATATAAAATTAAAGATTGCA
TGAGATGGGGAATCTGTAACTCATGCAAGCAAGAAGAAACCCTCTAAATT
TGAATCTCAGTTACTTTAAGACCAAGTCTTTGATTCTTATTTCTTGTAAA
TTTATTAAAATTCAAAATTAACATAGCAGTAAAAAGCTAAAGTTAAAAAA
GATAAAGAACCATCAGAAGGGTTACTTTGGTTCCACTTTCCAGAAAAAAG
AAAAAAGAAAGAAAGAAAGATCATATATAAAGTCTATCAACAAGTAATAA
CAATGGGTACCACAATAACTACTCTAGTTTCTTTTTTTCCTTTTTTGTCA
GAAATAGCTACTCTAGTTTCTGTATCATCTTTAGGTGATGTATCTCCACT
CTGTTGCAATCATCAAGAACTCAACATTTAAAAAGTTAAAAAGGGAAAGT
AAATTCTTAAATGAAATAATAACAAAACATATGCATCATCTATATTTAAG
CTGTATAACCCAGAATATTGTAGCCTTATATAAGAAGTATGTAGATATTT
CTTCAGAAGTTCATTGTCCACCTAAAACATATTTAGGTTGTATATTCACC
CAAAGCCATTTAATAGGGAAAATGTAAAAACAAAGGCCTTTAAGCGGAAG
ATAAATTTCTTTATATGGAAAACACAAACATAAATTAATAAAGAGAAAGC
AACACAAAGCAAAGACAACAATCTTTTTACATATATCATGCCTACACAAT
TGACAGTACACATGTAGGCTAGTGCAATTCTTGGGTCGTGAAAAATCGAT
AGTGCTGTTTTCTTTGTCATGCAAAAATCCATATCCGTCTTCTTTTCTTC
CAAAAGGAAATGGCTGGGAACATGTAGATGCTAATGTGATGACCTCAAGA
TTCTTCTACCCCTCTAGGTTTGCATATATTTGTTGTTAAGAAGCTCTAGT
TTTTGATGTCAACCCCCTCCTCCCGGCTTCCCCATTGGCAGTTTCATAGT
AATGTTCAGGCCTTGTATAGCATAGAGCAGACAATTACAATTACAATAAG
GTAGATCGATTTAGAGGTTGAGAGGTCCTCTTGTTATTCGTTCACATAAC
CTTTCTAAATATGAAAATCGATGGTCTAGAACTTTACAAACTAGTGACAT
CTGCTGAACAATATTTAATGTAGACCTTCTTTTACAAATGATCTGATGAT
TCCTACTTTACTCGATCCTCAAGCTCGATCAGGTGGTTGTGTAGACTTCC
CTGCTCTTCTGAAAAAAAGATGAAGTGTGTATGTGAAAAATTTTAGAAGA
AAGAGGCTTTGATTTAAAGGAGCCTAGTGTTTATCGTTCTGTTTGAAATC
CTGAAGGAGGTTCAAATCCTTCTCCCATCTCTCTTGGCATGTTGTAAATT
AATAAGTTGAGAAAAAGATTGATATTAACGGAAGATGTTTAATAATCTAA
AAGAGTTGGGACATCGAAGAACACGACAATTTTAGCCGCTCATCTTATTT
CTTTTCATGACTAAATTATAGCAAGACATCGTGATGTTGGAACTTGTGGG
TGATTTAGGTAACACTGAAAAGATCAACCACAAGCCATGCATAATGTATG
CATAATATAGCTTTTCTTTCATCTAAACATGTAATGTTGAGAATATACCT
GTTGTGAATAGGGTCAGGTCCGTTAGGTACTCTTCTCTTGCTCACAAAAT
TAAGATCGTGATGCAGAACACCGTGTTTCCTCTGTTTTCCTATAGACTTC
CAGTCCTCGAATCTTCCTGCTGACGCAACGACTGTAACCATAGTCATTTG
TCTTGTCTGATGGTTTATAATACCAACAAGCAATAAACAGACAACCCCCA
CAAAAAAAACAGCTCCCCTGGAGCCCCTGCAAATTCTACCACTGCCAACC
ATGATTTCTCCACTCTTGTCTTCACATACTCTCCCCAAGACAAACTTGCC
GGCCACTGGAGATGAGATTTAAGAACAAACAAGATTGAAACAATCACAGA
AGTGATCCTTTGGAGCTCAGGAGAGAGCTAAGCAAGTTGAAGAAGAGAAC
ATACTAGTAGCAGTGAAAAGCAGGGTAAGTGAGCTAAATGTTTCAATCTT
TCCTTGTGAGGAGCCATTTTGCTAACTTTATAACTGCAATATTAAAGCCC
ATTTTGTGGTACTTGAAGGGAGATTAGTACTATAACAATAATAATATACA
GTGAATAAAGTGTATCTTCTCTTTTACTTTAGATTTGGTTGGGTCCATGA
GAAACACAACATTTGCTTTCATGCAGCTGTTCAAAGGGACCTCACTATCT
CCCTGCTATAACATCTCATTCGTACTCGAAACATCACAAAGCCATTGATT
TTTGTGCCCATATTTGGACTTATTATTAGGGCAGAAGGGAATCTATAATT
TGCCGTAGTCCAGTATCATAAATGTAATTTCTGATTAGGATATATGCATG
GAAGCACATTATATTCTAAACCCGTTGTTTCCCGGAATTTGTATTGCTAG
TATAAAGCTCCCTCACCTTCTGTGTTTCAGGAAAAGATCCTGCTACAACT
TGTTCAGATGAATAGATCATATCATCATAAGGACCCTAAAATCTTTAAAA
GATACTAATACACAGAGTTCTAGGCATAACGTAGACATTTTCAGTACAGA
ATATCTTAGGCATAACGTAAACATTTTCAGTACAGAACATCTTGACGAGG
GAAGGGTTCGACAATCCTTGATGGCTGCTTTAGAAATATTTAAGGGTGAG
TCTGCAGATATCCGGACCTTTCACAGACCTGTTGATCTGGAGTTTTAGGC
AAGAGAGATTTGTAATGTTCTCGCGATTTATTAAGATTTAAGATCTACAA
TATCAAGGAAGAAAGTAAGTTTGAACAAGATAAGCACAAACTTTTGGGAC
ACGTGAGAAGTTTCATTTGGAATGCGCAAAACATAAAAAGAACTGTAAAG
AAATGTCTAAAGCAAATTGAACAATGAATAAAGGTTATTACTACCATCTG
TACACACAGGGAGAAAGAACTACATCAACAAACCCGCGAGCCACAAGCAA
TAATGAGGAAGGAAATAAATGCACTTTACAAGTAATTTAACACAGTCTAT
CTCAGAATTATGTTTATTGCTCAAAATTAACTGTTCACAGGTACTTCGTG
AATTTAGGGTTAGAGTTCTGACAGTAGAAAACATCAAAAAACATATAACT
TAAATGTAACTACTACATATGTTAGAATTTTAAGTTCTGATTCAACTGGC
ACTAAGCTGTCATACATAGTGCAACTAAGATGTTGTGAATGTAAGTTCTG
TTTCATGTTCACCAGAATAGAGAAATCCTTTAGCTAATAATTGGAGATGT
AGGAGTTGGAGCTTCCTATTCAATGGTCCCAACCAAAAAAGAAAAAGATA
AAGAAGGGAGCTAAACTGCAGTCTATTGAAATGAACAAATTGACAAGGAG
AAGCCACTGACACAACCTGCAGGGAGACTGCCCTTGGATTTTTGATATTA
AAATTTAGAAGTACTAGAAAATTGAAACTGGGAGCCTTCTGCTCAGTCTC
TATATAATTTACACATAATATGATAGTTATTGTTATGTTCTATAATATTT
CAGTATAACACAACATTAATCCTAACTTACATGTGGGTTATTAGCAAGCA
GGGAAAATTAAGTTTAAAAAAAAAATTAGTTGATATTAGGAAGGGTTTTG
GAGCTGCACGGGAGGGTTAACACCACCACCAATACTGTGCAGTTAATTTG
ACCGTTCCCACATAAGTTGCGATATTTCCCTTTTATAAGTTAATAGCCCA
TCTTCTTAAGAATGATCTGTGAGCTGTTATGGAGGAGAATAATACCCCGG
CTTACAGTGCTGGTCCGCCCAAGTAACGTAAGGGCTTGTTGTGAGTACTG
GACAGTTGCATAATGCAAATGATGCAGAAATAAAAGGTCTAGGAGTCCAA
CTGTTTCAGATTAGGTATGAAGTGATCGAAAAATGTTGGTCTGATTGTAT
GAAACGAGCTTCCCAGTCTTTCTCATGCCACGGAAATATGTTCACCAGAT
CTGAGGGAAAATAAGAAAAGCCGAGGTTAACTCTTATGAGTATCAATCAT
AATATGGTCCAGAGCCGCAGAGTCACTCCAAAACAAAGTATATACTCCCT
TAAAGCCGTATTTTCAATTCAAACTTGATTGTATATAGTTCATTCAGGTC
TCAGGATGTAACCAAGACATGCTTGGAAGTTGGAAGTGTATACTCCCTCC
GTGTCAATTTATAGGTCTCTTTTGGAAAAAAATTTGTCCCAAAATACTTG
TCCTTCTCTTCTTTCAATACAAATTTATCTACATATTAATTGTGATTTTT
TTTGAAACTCAACATTATTCTCATTTCATAATGCACTAAATCCCCATATT
TATTGTGATTTTTTTGAAATTCAACTATATTCTCACTTATCAATGCACTA
ATTAATGATACATGAGATAAGATTCTATATAACCAACTTTTTTCTTAATA
TGAGTGTTTATTCCAAAATGGACCTATAAGGAGTACTCCCTCCGTCCCTT
TTTACATGTCCTTTTTGAAAAAAAAATTTGTCCCAAATTACTTGTCCACT
TCTCTTTTCAAAGCAACTTTTTGTATGTTTTTTCAGAATGTAACAACTTC
CAATGTTTGACTAGCATATATATATACACAACTCTATCTAATTCATTACA
TTTATTAGGCATATGTATGAAAACAAGATATTCACCTAACATTTTCTTAA
GATGCGTTATTTTTTCAAAAGGGACAAGTAAAAGGGGACGGAGGGAGTAT
CTGATAGGGAGAAATCAACGAGAAGCAACTAAGCATAAGCAAGTACAAGT
CTAACATAAGTTAAACCATACTAAACTAGCAGATATGAGTTAGATAAAAC
TTAGGACAGTGAGTGGTCATCATCATTTACCAGTTCGAATCCAATGTATT
TACATGGATTTTGGCTATTGGCTAGAGGGGTCATTTTCCCAGTCGAGAAA
AGTTTGATGCTGCTGTTTTTTCGTTTTTTGATGTTATGAACATGACACTT
TCTTGTGCTAAAAGTGTATAATATGACCTCCCCCATGTATTTTCTCGTTT
TGGTTCTCAATGTTTATGTGTATATAGGACCATGTTTGATTGCACTCGTA
TGGATCGAGACAATAACTTCAAGACAAATGACCTTAAAGTTATATGTACT
CGGCTCCATGCGTCAAATAGGATTAACTTTTTGAATGATTCGCTGATAAA
AATTTATAATCTCCAGCCGAAGTCTCCAAAATTAATCAAAATAGATATTT
TCCGACGATTGCGCAAAAGCCCAGGGCTGAAGAAATACTATGATCTCCGT
TTTGTGAAAAGTTTTTTTTTTTTTTTTTGACAGATTTTTTGTGAAAAGTT
GATTCAGCCAAATCAAACTTTTTCGTGAAGACCCCGGCGTAGTGCACAAC
AAATAAATAGTGTGTGATACGATATTAATATGATACTTTAGCCCGTGGTT
TTCTTCACACGAGATTTACCTAAAATAGTCCCCGATATTCGATGATGGTT
GAGATAGTGAAACCGGCGGATATGAAACCGGATAACAACCGTCATTGCAC
ATTTTTTTTTAATTTACTTGATTCCTTTGTCGTATAATCCATCCATCGAT
TCTCCTTAATCTACACTGCCAAGATAATAATCGCTAATACACTAACCGTT
GTCGAAACTGTCGTGACTATTTCCAAAACTTCCCGGGAAATGCAACTGTG
TCCTTGTTCACACACGGAAAACATACATCTAGATACATCTATTTAGAGTT
AAGTTCAATGGAGATCATATTTTTTCTGGAGACCTGCAGACCACATATGT
TCTGCAAGTAAAATATTGCAAAACGTATAGTTTTACAAATCATGTTCTAC
GAAATCATTATTTCATTTAAAATCTTGAATATCATATAAGTTTTACATGT
GGAACATTACAAAATATTTTGTTCTATGAAATATGTTTAGTTTGCAGAAC
ATTTGTTCAACTTGTAGAACATACATTATCTACTTATTAAACATAGATGA
TCTTCAACAATTTTAATAAATACATGATATTTGTAGAACATATTTTACAA
AATAATCATACATTATCTACTTATTAAACATAGATGATCTTCAACAATTT
TAATAAATACATGATATTTGTAGAACATATTTTACAAAATAATGTACTAC
CTCCATCCCAAATTAGATGGCCCCGTTGACTTTGGGCACGTAACTTTAGG
TGCATTGACCGTCTACTTCCGAAATATATTTTTTTATTTTTTCTTTTGTA
AATAAAAATTTCATATTTAAATATTTATTTGCAAAAATAAAATTTTAAAA
ATAAGTCATGTAGCTATGCGGTCAATGAACCTTAAACTGTGTGGCCAAAG
TCAACGGGGCCATCTAATTTGGGATGGAGAGAGTATTTTATAGTGTAACA
TACGTGGTCTTCAAAGGTCTCCGATGAAATAGCGGTCTCCAAAGAATTTT
CCTCTATCTATTTAATATATTAGTTTTTTTCATATTAAGTTATTAAGTTA
TATATTAAAAAACAAATATTTCAAAAAATTACATCTTAATTGTGGTTTGT
AGCATGATAACCGTTCTTTTAATTTAAATTACTTTCTAATTGTACAAAAA
CATATTTAACTTAAATGTAAAAATCATTTAACAATTGGACCTTCCTCTGC
TTAATACTCAGCACAAACAATTTCTGTATCCTGAAATATCAGTATATATA
TATATTTTTTTTTTTGTCATAAGAAATATCAGTATATTGATTGAACTTTA
TTTCAGAAACTAAGGGGAAAAAAATTCCAAAATTCCAATCGTTACAAGAA
TGAAAATACAAACGAAATAAGTAAAGGGTGGCCCGCGCTATAATTCGTGC
GAACAACTCAAATTTATTCCCACCCGCTTGAACCTAACCAATGAATCTTC
AGCAACTACTGCATTGTGCACGCGCCTTCATGGAGTTGGTTAGATTTCCT
CGTTAGTCGTAAATGAAAGCATACGCCATACTTTAATATTATAATATTGA
TAAATCATCTTGCTTATTTATTAATTTAAGATGTACTGTTGTGGTCAATA
TGAGTGCTACGAAGCATAATTTAAGTTTCAGATTGGGTACGTTTAGCCCT
CCTTAATTTATGAGTATAAATACTTATTTTAGTGGAGCTTTTTTAATTTA
TATAATTTTGGATAAAATATATTAATAGGAGTCTAACATTTCATATTTGT
ACAAATATTTAATTTGTTATGAATCATACTATCGGTGAACAAAGTGAAAT
AACCTACAATGCTCTCTCAACAGTTTATTATTTAATTATTTAATCTAATA
ATTTTATATCAAGATTCTCTTCTTGTCTCTAAATTTTAATACTTGTCAAA
TATCGTGCGTTTAAAAAAAATGAAAACGCATATATATATATATATATATA
TATATATATATATATATATAATTAGATTATTTCCAGTACCGGTTCCTACT
TGAACATTAAAACGAAATTACTTGTACTCCAAACTTAATTTAATAAGACT
AATGATCAGTCTAAATACGGGTAAAAATATAAATAGAAAAAAAGAATATT
TGTTATCATACCGAAGAAAAATCATTCATTTACTTCCTCGTCCTAATTTA
AACAGTCCCTGTTACCTTAATTTTCATAACTGTTTTTATATTTATTCGTA
TTGTCGTCATATAATATACTATATTAGATGAAAGTTATAATAAAAATGAC
ACAAAAAGAACTACTTGAAAGATTGTAAATAATTTTATATTAAAATAAAG
TAAGATTAATTAATTTGAGTTTAAAAATATTTTCCAAATAATTACATCAA
AAAACACTGTTGTTAATGGAAGTGAGCAGTTATACTTGCACCCGGAAAAT
AAAAAGGAGTGGATAGCGTATAATAAAAGGAGAAATAAGCGCGTGAGCAT
CGCAGTCGACAAGAAATATAAATGCACTCGTGGATAACAATTAAATAACG
ATAAAATATTACATGCCGATTAAATAAACAAACAGATGAACGTGTTCATT
CTTCTTCATCCAAGAAGCTGCGTACGCAATCATCACACATATACACACAC
ACTATACTTACAGATACTTACACAACACAAACAGGCAGTCAACTACTACT
GCTCCCCCATCCCATTAAACCCACCACTCCAACCACTTTTTTTCTCATTT
AATAATTAATCACACTAATTTTTATTTATTGAAAAGCCACTTTTTTAATC
ATAAGCTGAATTGGGTTGGTTGTGAATATTTGGTATAGTGTAAAGCTCTC
TTTTTTATCTGTTGGGTTGATAAGATAAATAAAAATCTGATATTTAAGAG
AGGTGAGTTTTGGAGGGTGTACAAGGTGGTGTGTTTGGTAAAGGAAGAAG
CTTGATCTGATTGAGCCCAAGAACAAGAAAATGGGATCAAGTGGATCCAA
GCCCAGAGGATGTGGAGGTGTCATGGGTATTTTTGGAAGAAAACAAAGGA
GATCAATGAGAAACAAGAAGAAAAAGATTGTTGCTGATGCTGATAAGCTC
AGTAAGGTTGATTCTTCTGTTTCTGTTGTTAATCCTACATATCAAGGTAT
TTTTTTATTTTTTTTTGCTGCTTTTTAATAAAAAAAAAGTGTTTTTATTT
GGTTTTGAGTTGTTTAATTATTGGTTATGTACTTATGTTATGTATATTTT
GATTGTATAGAGTTTAGATTTGATTGCATCAACTTTGTAGTGGGGGGAGC
GGGAGGGGCTATACAGCCTATACTATGAATCTTAGTCATTGATTATTAAA
TTATTATGTTTGATTTATGTAGTTTAGATTTTGGAATACCATGATAGGTT
GTAATTCTGCTAGCTAAGTTGCTGCATTGTGATATTACATGATTAATCCA
GCTATGTCACTTATGATTTTGGAACTCTATACTAGTATGGTTATTACTAG
CAAATGATGCTAATATCTGTTTATACCTACAATAAGAAAGAGAAAAGAAT
TGCCCGTAGATCTATCTGGTATAAGTACTGGTGGTACAAGTGTTTATACT
GGGACTGAATTTAGTGCTAGACAGTAACTATTAAAAAGTCACCTGAATTA
ATACAGGAAGAGGAAAATTTATCATGAACACTCGTAGGTGTTGCAAAGAA
TAACTGATTTTTGCCCAATTCATCTGAAGATATATTTGGGCTACACTAGA
AGTTGAGTGTTTTTCACAATCAATCTTCTTCACTTTGTGAAAATTAGCTG
CTCTGTAGAAGACAGCATGTTTTGACATGGAAATTAAGTCTTAAATAGTG
AGTAAATTTAATTATAATTATGATATAAGATTTTGCAAATAGAATTTGTC
TGTGTTGATATAATGTGAGAATAAACAGGCTGGTGCCTCAGCTTGAATTA
CCTTAGACTTATCTCTGCTTCTCTAGATATAATGTGGATTTGGCTTTTCA
CAAAATTTGTATTTGCATTTTCTTGACGTGCAAACAGGTAATTCCGACAC
CTGGTTTGACCCTGTGATGAATGTCGAGTCTGATGGTGATGATGATTTTT
ACAGCAGTAAAGATGGTAAGCAGAATAGTTTTCATTAGTCTTATTTGGTA
TATCATCAGACTTTCTGAAACTCATCATGTCTACAGATGTATCTCAGGAT
GGTTCTATATCAACTACTGTGACTCCAAGATGTTCCGATTCCATACATTA
CAATGGCGCTTTTGCTACATCAGATCCTGTCCCGCAACCAAGCACGTTAC
CTAAAGAACATATAGAATGTAAGAGAGATACTGCTAATAATGTGGCTCCA
ACAGGGTCTCAACTGAAACCTCGTGTTCTGCAAACTGATAGAAAAATTTC
ATTAGTGGTGGATGATATCCCTACTCATTGTGCTGACGAAAATGCTAGCG
GGGATCTGGGAATGTTGCACAATTGTGGTCTTCTGCCTAATAATTGTTTG
CCTTGTCTTGCTGGTACTACCTCCTCAAGTGATGAAAAGAGAAAATCGCT
AAGCTCAAGCCCAAAGAAAAAGGCACCTTTAAGACTTTCCTTTAAGTGGA
GGGATGGACAAGCTCATCCTACATTATGTAAGTGCTCCATCTTGATCCGT
ATATGAGACTTTCTCTTTTTGTATATGCTGCTGTACCTTTTTTTGCTCTG
ACAAGGCTGCTGTACTGTTGACACACAATGAACTGGTATGGTATAAGCAA
TAAAATGTGTCCGGTCTCTTATATGTCTAGATGATGAGCAAACTCACGAT
TAACACCAAATGTATGGCGTGTCTAGATATAGGACCATGAAGTTCTTTAA
TGAGCGAGAGTATGTTCAACATATAATGTTGAGTACGAAGTACGATATTA
TTTGGTGGTAGTACAGTAACTTTTAGTGAGGCTTTAAAACTGATGCAAGT
ACACACTTAACTACAATACCTGTTTTATTACAGTTTCATGTTTCATTATT
TTTTTTAATAATTTCCATACTAAGGTTTCATGGGTTAACCATCCCTTCTT
TTTCAGTATCTCCCAGGGCTCTTCTACGAAGGCCTATAGCAGGTTCTCAA
GTTCCATACTGCCCGATTGATAAGAAATTATCTGATAGCTGGTCACCGAT
TGAGCCAAATACTTTCAAAGTTAGAGGGCCGAACTATTTCAGGTGAGAAC
ATGAACTTGGTTGGCTGACACTTCTCAGTACAGGAAATTATTGACACCAT
AGTAGTGATACATTCTGCAATATATCATTTATATCTTGATATGTACTTTA
CCAATCCTCGTAACAATATGACAGAGATAAAAAGAAAGAACCAGCTCCAA
ACTATGCTGCATTTTCACCTTTTGGAGTAGACGTGTTTGTATCTCCACGT
AAAATTGATCACGTTGCACGTTTTGTGGAACTTCCTGTCATCGAATCATG
TGGGAAAATCCCTTCTGTCCTTGTAGTAAATCTTCAGGTACATTTACTTC
TCACTTTGTTGAATGTTACATTCCAATTTGAGAAGCACATTTCTTGTGGA
CATGACATATTAGCTCAACACACTTTTTTTTTTTGCTAAATTACTTATTT
TGTTTAAATCATAAGCTTTCATCTGACAACAGAAAGTGATTCGTCTTTGT
TAAAATTCATGCTTTGGATTTTTATTTTTATTTTTTTCCATGCATTTACT
GCTCAATGTTGAATTTCTTTTCCATGGCTCTCTTTCTTAGATACCGTTAT
ATCCTGTCACCATATTTGAGAATGAATATGATGGGGATGGAATGAGTTAT
GTTCTTTACTTCAAGCTATCAGAAGGTTATTCAAAGGAACTTCCTCTGCA
GTTTCAGGAAAATATCATGGTGAGTTAAATGTGTTACTTTAGCAGTTTAG
CTTCTCACTTTATACATTTCACAATGATACTTTTTCTTTGACACTTGCAT
ATAGAAAATTTATAAAGTTATAGAATCTCATTATGATAATATCAATATTT
TCAACAACTATTTTTTTTTAATCTTTGCATGCTTCTTAATGTGACAGAAA
TTAATTGATGATGAAGTAGAGAAGGTCAAGGGTTTTGCTATGGATACAAT
TGCTCCGTTCAGGGAAAGGTTGAAGATTTTAGGCCGGCTAGAAAATTTGG
AGGAAATCACCTTAAGTGCAGCTGAACGGAAGCTCATGAATGCATACAAT
GAAAAGCCTGTACTGTCACGTCCTCAGCATAAATTTTACTTGGTAAAGTC
TGCTATGCAAATCCTTTATTTTGTTCTCCTCAAGGAAGATAAAGCTTTAA
CCTCTTTGGACTCATGTTTTTGTTGTGTAACATTGTTAATGCAACTTAAG
TAGACCTCCCTTTATACAATAAAGTTCCTGTTCTTCAGTAAACATCCACG
TAATCATCTCCCTTTTGGTCTTTTTTATAAGGCAAACTTTAATAGTGATT
ACCAAGAAATTTTAGGAGCATAAACTGTAACCTTCCTATATGTTGTTTTG
GTCATAACATCAGAAGAGATGTGTTCTAATCTTATAATTGGCATTTGACC
TGTAATGTGTAAGGTGGAACTTCCAAGGATGTTATTGCTAATAAATCTGT
TTGAAACTTTTTCAGGGAGAAAACTATTTGGAAATTGATCTAGATATGCA
CAGATTTAGTTACATATCAAGAAAAGGTTTCGAAGCATTTCAAGACAGGC
TAAAACTCTGCATCCTGGATTTTGGGCTCACGATACAGGTTGCTACCTCC
ATCAATTTTGTATCTACGACTAAATTCAACAGTTTACTTGAGATTCTAAA
ATATTCATCTACCTGACATACCTATTGTCACTTGAAACAGGGAAACAAGG
CCGAGGAGTTGCCAGAGTGCATCTTGTGTTGTGTGCGGTTGAAGGAAATC
GATTATACCAACTA
Sequence Length:
16664
Sequence Checksum:
a5d95474cc7511a38629e816a640333d
View location in JBrowse:
Cds:
>DCAR_011176cds ATGACCTCCACCCCTCTTGTAAAACCTCTTCTCTTAGCTTGTTTTGTTAT ATCCTGTATCTATACATCTGTAATTGCTGAGGATGATGTGACTTGCTTGC AAGGGTTTAAAGATTCAATTCAGGATGTAGATAATAAGCTATTTGAATGG AGCTTTGGTAATACAACTGTTGGGTACATCTGTAAGTACACTGGAGTCAC TTGTTGGAATGATCGTGAGAATCGTGTTGTAAGTCTCGAATTACGGGAGT TGAATCTTGCTGGTCAGTTACCGAAGGCGTTACAATCTTGTCATAATAAC TTGCAAACTCTTGTGTTGGCTGGTAATAACTTTTCGGGTTCAATACCGGA TAAGATTTGTAGTTGGTTGCCTTTTTTGAGTACTTTAGATTTATCGGGTA ATAAGTTTGTTGGATCAATACCGGCGTCGTTGGCTGATTGTACTTATTTG AATAATCTTATATTAAGTGATAATCAGCTGTCGGGAGAGATACCTGTTCA GTTAACTAGTTTGAATCGGCTTAAGAAGTTTTCTGTTTCAAATAATGCTT TGAAAGGGACGGTTCCATCCGCGTTTAGTAAATTTGATGAATCAGATTTT AGTGGGAATAGTGGACTTTGCGGTGGACCGTTGAAGAAGTGTGGTGGTTT GAGTAAGAAGAATCTTGCGATTATTATTGCGGCTGGTGTGCTCGGTGCAG TTGGATCGTTGTTGTTAGGGTTTGGGTTGTGGTGGTGGTGTTTGAGGTCA AATAGGAGGAAGAAAGGGAGCGGATATGGGGGAGAAGATAGTGAGAGTTG GGTTGAGAAGTTGAGGGCTCATAAGCTTGTTCAGGTTTCTTTGTTTCAGA AACCGCTTGTGAAGGTCAGGTTGGTGGATTTGATGGCTGCCACAAATAAT TTTGATGGAGCGAGTGTTATTATAACTGCTAGGACTGGAACAACCTATAA GGCTGTTCTTCCTGATGGGTCTGCACTGGCAATTAAGCGGCTAAGTAGGT GTAAGCTGAGTGAGAGGCAATTTGGTTTTGAAATGAATAGATTGGGGCAG CTTAGGCATCCAAATCTAACTCCATTATTGGGTTATTGCTTGGTGGAAGA CGAGAAGCTTTTGGTATATAAGTACATGTCTAACGGAACATTGTATTCAA TGTTGAATGGGGGGAATGCTAGTGAGCTAGACTGGGAAACCAGGTTTAGA ATTGGTTTGGGTGCTGCAAGGGGGCTTGCTTGGCTTCATCATGGGTGTTA TCCTTCTATATTGCACCAGAATATTAGCTCTAATATGATACTCTTGGATG AAGACTTTGATGCTCGTATAATGGATGTTGGATTGGCTAAGCTTATGACA TATTCGGATCCCAATGAGCGTGGCCTTGTAAATGGAGAGTTGGGTGAGCT TGGTTATGTAGCTCCAGAGTACTCGAGCACAATGGCTGCTTCTGGAAAAG GGGACGTTTACAGTCTTGGGGTAGTGTTTTTGGAGTTGGCTACTGGTCAG AGATGTCTTGAAGTTAGTGGTGCTGAAGAAGGATTTAAGGGAAATTTGGT GGATTGGGTGAATCACCTTTCTGTTTCTGGTCGAATTAAAGATGCAATTG ATAAACGGCTCCGTGGAAGGAAACATGATGAAGACATTGAACAGTTTTTG AGAATTGCATGCCATTGTGTGGAAACTGTGCCCAAAGATAGGTGGTCAAT GTTCAAGGTCTATGAATCTCTGAGGATTATTGCAGAGGAACATGGCTTCT CGGAACAATATGATGAATTTCCATTGCTTTTTGGCAAAGAAGATATGGAT AAGGTAATATAG
Pep:
>DCAR_011176pep MTSTPLVKPLLLACFVISCIYTSVIAEDDVTCLQGFKDSIQDVDNKLFEW SFGNTTVGYICKYTGVTCWNDRENRVVSLELRELNLAGQLPKALQSCHNN LQTLVLAGNNFSGSIPDKICSWLPFLSTLDLSGNKFVGSIPASLADCTYL NNLILSDNQLSGEIPVQLTSLNRLKKFSVSNNALKGTVPSAFSKFDESDF SGNSGLCGGPLKKCGGLSKKNLAIIIAAGVLGAVGSLLLGFGLWWWCLRS NRRKKGSGYGGEDSESWVEKLRAHKLVQVSLFQKPLVKVRLVDLMAATNN FDGASVIITARTGTTYKAVLPDGSALAIKRLSRCKLSERQFGFEMNRLGQ LRHPNLTPLLGYCLVEDEKLLVYKYMSNGTLYSMLNGGNASELDWETRFR IGLGAARGLAWLHHGCYPSILHQNISSNMILLDEDFDARIMDVGLAKLMT YSDPNERGLVNGELGELGYVAPEYSSTMAASGKGDVYSLGVVFLELATGQ RCLEVSGAEEGFKGNLVDWVNHLSVSGRIKDAIDKRLRGRKHDEDIEQFL RIACHCVETVPKDRWSMFKVYESLRIIAEEHGFSEQYDEFPLLFGKEDMD KVI*