LOC108221994

Resource Type: 
Gene
Organism: 
Daucus carota subspecies sativus
Name: 
LOC108221994
Identifier: 
LOC108221994
Cross Reference: 
NCBI Gene
Relationship: 
There are 3 relationships.
Relationships
The mRNA, XM_017395868.1, is a part of gene, LOC108221994.
The genetic_marker, MK006435 K3879, is located in gene, LOC108221994.
The mRNA, XM_017395867.1, is a part of gene, LOC108221994.
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
Transcripts: 
Transcript NameIdentifierTypeLocation
XM_017395868.1XM_017395868.1mRNADCARv2_Chr5:33912655..33929414
XM_017395867.1XM_017395867.1mRNADCARv2_Chr5:33912655..33918434
Sequence: 
CCAACCCACTCAGTTTGTCTTCCCATCTTAAAACAAAACAAACATATTTC
TCAATCCGCGTGTGCCCTTTTCCGTCATTTCGCACCCTCCCTCAGCAATT
ACACACTGCTCATCATCGTCTTCCTCATACACGCATATATAGACACGCAT
ATTATCTGTGTATTATTATCGATTATTCGGCTTCTCCAAACCCTAGCTTT
CGCCGAGGTGATTTCTCATCCATTTTTCGATTTTGAATGGTATGTAGCTG
TATGCCTTACTTGATATTCTGTTGTGATTCAATTCGTTACTTGTTAATTT
GTTATGAATCAGTTAGTTGTTTATCTCACTGTTTTAATTAGCTTTTAATT
TGGTCTTATATTTGTGTGAGAGAGAGAGAGACAGACAGGGAGGTAGAGGG
GGGAGAGAGAGAGAGAGGGAGGGGGGAGGGTAGGGATGGCAGATTTATCC
GACCCGATGGATATCCGCCCAGTTCCGAACCGATTGGATCTGGATCTTAA
GTATTCTGAACCGAGACCCGACCCGAAACCCGATAAAAACCCGATACAAA
ATATTCATGTCTTTGAATTCGGTTTTTTACTTGTATATTCATGTCTATGT
AAGTGTTTGCATTGCTTGATCATCTGTTTTTTAATCAATTAATTTTTATA
GTCTTTTTTTTTTTGATAGGGTTTTGAATTAGGTTTTTATTTGTTGTGTG
TTATTATTTTTATATGTTTTGACAACTGAAAATGTGTTATTTTTTACAGG
TAGGTTGATATTTGTATGACGAGTGGTGATTTGTTATGTTGAATGGTGAT
TGAGACACGTAGAGTAAACTGTTTAAGATTTGATTCCGAGATGTCCTCTA
AGAATAGGGAGAGTATGTCGACTGATGAAGATGAGTTTTTGGATGATGTT
TTTTCGGATGAGGAGGATGACGATGATGATGAATTTAATGATTGTGATTC
TGGCGCGGGTTCTGATGACTTTGATTTGTTAGAATTGGGGGAAACTGGAG
CAGAGTATGTACAAGTTGGGGATCAGACTTGTAGTATTCCGTTGGAGTTG
TATGATCTTTCCGGGTTTGGTGATATTTTGTCTATGGATGTGTGGAATGA
TGTTTTGACAGAGGAAGAAAGGTTTGATCTGACAAAGTTTCTACCAGATA
TGGATCAAGAGATGTTTATGCGGACGTTGAAGGAGCTGTTTACAGGTTGT
AATATGCATTTTGGTAATCCCCTTGATAAGCTTTTTAAATTGTTTAAAGG
TGGGCTATGTGAACCACGGGTTGCACTTTATAGGCAGGGTTCGATTTTCT
TTCAGAACTGCAACCATTATCATCATCTCCAGAAGTATCAGAACTCGATG
GTCACTAATTTTCATCAGATAAAGGATGCTTGGGCGAATTGCAAGGGATA
CAGCATTGAAGAGAAGATCCGAGTGTTGAATATTATGAAAAGTCAAAAGA
GCTTAATGCATGAAGATATGGAAGACTTGGAAACTGACTCGGAAAGGGAA
GAATCGGTAGATGGCATTTGGAATAGGAGGCTGATGAACCAGAAAGTAGG
ACAGAAAATAAGTCATTATTCTGAGGAAAAGCTGAGTTCAGCCTTTGGTT
ACTCTTCTCGAGAGAAGCAGGTGGCACTTGATACAGCACATTATGAAAGG
CAAAATCCAAAAGGGACCTTGAAAGTAACTGGGTCGAAGAAATCTGCTTC
AAAAGAATCAGCAGGTTGTTACTCTGCTGGTCGTCAGGGCATGAAAATGA
GGTCAAGCCCTTATGGTTTTGCATCAACTTCTTCAAGATATGACATGGCT
TCTGGAAACAATTCACACGCTGCTTTCAGGATGAGAAATCGGGTACCAGA
TGATAATACTGACGGAGAAGCATTGTATAAAGTAGCTGTCCAGAGCAATC
GGAGTTTCCTAAGCACTAGTCGAAAGGATGATCCTGCTAACTCTAAAGTT
TCGGAGAAGTATGAAAATTACGGAGGTGATAAATATTCTGATATCTTCAC
AGGCTTACCTTTGTCTTCAAAAAAGGATTTTTCTGCCTACAATAGGAACA
GAACTGTGAATCAGTTATCAGATATTGAGTTGTTAACAACAAAGCCATCT
AAATCTGTGTTTTCTCATGAATACGTCAACAATCTTGAATCCCCTGATAA
CATGCAGCACTTAAATGTTGGTGAGAGAGTGAAGTTTGAGAAAGGGCACT
CTTCAAATTTATTGTTGAAAGGAAATCGGGCTGAGTTATCAGATAGAGGT
GATCCCTTTCGGCATGGGATAGCTAAAGAAGAGCATTTCTCAACTGATTT
ATCACCTAAATATGGTAATTTAAATGTTAAAAGCAAGTCCAAGTTTGAAA
AGAACTCTCCTGATATTAAAGTGAATGATAGATCTGGTTCAGGGTATAGA
GAGAATCCAAAACATGAGGACAGGGGCGCGATATCTAATCAGGATGGACG
ACGAGTTGTGCCAAATGTAAAGCGCCGAAGAACTTTCACTTCAGATTCAG
ACTCATCTGAGCAATATGAGGATGACAATCCTTTGATGAGGAGCAAGTGG
GCTTATCCCGGTGGTGCCTCAGGTATGAAATCTGTTTCATATCCAAAGCA
GGCTAAATTTGTCAAAGGGGATGAAAAGATTGGTGGATGTGGTGATGAAA
TTTCCAACATCCAGAAGAAGATGGGTTTCCATGGTACACATTCATATATT
TCAGAAGACATTTTCAGCATGAAAGCAAAACAAAAGAATAAGATGGATGA
TATGGGCAGAAATTTTCCTGGACCAGGTAGGAGCACTGGTTATAATTACA
ATGATGATTGGGGAGAGTGGTCCAAGTTTGGAAGGAATGGTCATGTACAG
GATGAACAGAGCGAAAGGATTTCAATGGCATCCATGCGTCCTTACAATGT
TGGCAGGATGGAGAAAATAGAAACCATGCCTGGCTACTCAATGGCTGACA
ATGAAGATGATTCACTTAAAAGTATATTAGCAAAGCATAAAAACACTTCT
GGTAAGATGCAAAATAAAGGTAAAGATATTGGAGCAAGGGACCGACATTT
TGAAAGATCTGACATGCAGCTATTAGAATGCAATTCTTCAATGAAAAAAA
GGAAAGTTAAGGATGATATGATGATAAACGTACCTGAGCCAAATGAAATT
GGTACTCCTGAAAAAGGAGTTTCTGATCTATCTTCTACTGTAGTGTTAGC
TGGAGATGATGTCGAAAGCAAATCAGTAAAGAAGCAATTTACATTGATCA
CTCCTACTGTTGATGCTGAATTTTCATTCTCAATCATTCATCTTCTTTCA
GCTGTTCGTATGGCAATGACAACCATACTTCCTGATGATCCTGTGGACAT
GGGAAAGCATAATGGCAACAATAATGGAGTGCTGAAAGATGATGAGGAGG
AGAGTAAGCAGGAGGGCATTGGTGGGGAACTATCTCACCTAAACAGGGAT
ATAAAGAACACTGCGAGAACTACCGAGCTGAATCTTCCATCTCTTACTGT
TCAGGATATTGTTAACCGTGTAAAATCAAATCCAGGAGATCCTTGTATTC
TTGAGACTCAAGAGCCACTTCAGGATTTGGTCAGAGGTGTTCTTAAATTA
TTATCATCTAAATCACCTCCTTTAGGAGCAAAAGGTTGGAAAGCAGTTTT
GAAATATGAAAAATCTACAAAATCCTGGTCCTGGATTGGTCCACGGAGTC
CTTCAGATCAGGAAACTATCGAGGAGNATGGCAATGACAACCATACTTCC
TGATGATCCCGTGGACATGGGAAAGCATAATGGCAACAATAATGGAGTGC
TGAAAGATGATGATGAGGAGAGTAAGCAGGAGGGCATTGGTGGGGAACTA
TCTCACCTAAACAGGGATATAATGAACACTGAGCGAACAACCGAGCTGAA
TCTTCCATCTCTTACTGTTCAGGATATTGTTAACCGTGTAAAATCAAATC
CAGGAGATCCTTGTATTCTTGAGACTCAAGAGCCACTTCAGGATTTGGTC
AGAGGTGTTCTTAAATTATTATCATCTAAATCACCTCCTTTAGGAGCAAA
AGGTTGGAAAGCAGTTTTGAAATATGAAAAATCTACAAAATCCTGGTCCT
GGATTGGTCCACGGAGTCCTTCAGATCAGGAAACTATCGAGGAGGTGACA
TCTCCTGAAGCTTGGGGTCTTCCACGCAAAATGCTAGTGAAGCTAGTTGA
CTCATTTGCAAATTGGTTGAAAAGTAGTCAAGAGACCCTCCGACTAATTG
GAAGTCTTCCTGCCCCTCCGTTGACATTGATGCAGCTTAACATTGACGAG
AAAGAAAGGTTTAAGGACTTGAGAGCTCAAAAGAGTCTAAACACCATAAG
CCAAAGCTGTGATGAGGTAAGAAGTTATTTTCGCAAGGAAGAAGTTCTCA
GATATGCAATACCTGACAGGGCCTTCTGCTACACTGCTGCTGATGGTAAA
AAATCCTTTGTAGCTCCCTTAAGAAAGTGTGGTGGTAAACTAACATCAAA
AGCCCGAGAGCACTTTTTGTTGAAGCAGGATCGGCCGCCGCATGTTACAA
TTCTTTGCCTTGTCAGAGATGCAGCTGCTAGATTGCCTGGCAGTATTGGA
ACAAGGGCAGATGTCTGTACTTTAATTAGAGATTCCCAGTATGTAGTGGA
AGAGGTCTCTGATGCACAAGTCAATCAAGTTGTTAGTGGGGCCTTGGATC
GTCTGCATTATGAACGTGATCCTTGTGTTCAATTTGATGGTGAGAGGAAA
TTATGGATGTATTTGCATAGAGACAGAGAAGAGGAAGATTTTGAGGATGA
TGGGACGTCATCTACTAAAAAGTGGAAGAGGCCAAAAAAAGAAGCTCCTG
AGTCATCTGAACGGGGATTGGTGACTGTGGCTAATAATGTGAGTATAGAA
GGGGGCCAAACTCAGATTGAACCAAGCTCTAATCTTATTGTTGACCCTAC
ATGCATGGATGAAGATAAAAGGGCGGATCATCTGTATTATAATGATGGGC
AGAATGAAGTCAACCTTGAGGGTCTTGACCAGCCTGGGATACATTATAGC
TCTGATCTTATTGTTGACCCTTCAAGCATGGTTGACCATAAAATGGTAGA
TCATTTGCATTATGATGATAGACATATGGAAGTCAACATTGGGGGTCTTG
ACATAATTGGGATTCCTTCAGGCTCTGGTCTTAATGTTGATCCTTCATGT
ATGGATGATGGAAGAAGGGTGGATCATTTGCATTATAGTGATAAACATAT
GGAAGTTAGCATTGAGGGTCTTGACCAAACTGGGATTCAATTAAGCTCTG
AAGTTCGTGTTGACCCTTTATGCATAGCTGATAATAAAAGAATGGATCAT
TTGAATTACAATGACAGAGAAATGGAAGTTAACATTGATGGTCTCGAACC
TAAGCAAGGGATCATGGACCAAGGTCCTCCAATGGTGTGGCAGGCTCATG
GCCTAAATTCCATCCAGGAGAACAGCTTGTTATGCATAGAAAATTCCAGA
CCCGGTGATTTTGACAATGGGAATTTGGGCAGATGAAACCAGCTTATGTT
AGGAACATGCTCGTCCTGAATAATGCTCAAAGTGAGCTAGTGTTTCTCAG
CCCCTACTCCAAATCAGCTGGTCGTAGATTTAGTTGGATTTGGCTGTTGG
TATTTTTGTGAACCATCTTATCTTTAGTGTCATCCATTTTGCCTTTTTAT
GTGATATATACTATGTAATGGAAGCAAGCAGCAATAATATCTCTGGTGGT
AATAAATAAAAGAAGAACTTTTACACCAAGTTTGTTATGTCGCATATTGC
AAAATTTTAATTTCCAGCTTTGAACAATTCTCTTTTGGTGAGCCTCAGTT
TCTAGCTGTTGGCTTTCAAAATAATTCGAAAAATCTGATATTGAATGATT
GCATTAACGGTATGGCTTTCAAAATAATTCGAAAAATCTGATATTCATTC
GAAATATTTGTATCTTATTCGAAAAAAAATGGAAATTATCCGTATTTGAC
TTGAGGCGGATATTATCCGTATTTGAATCCGAGTATTTCGGATACGGATA
TGGCACATCCGAATCCGCAAATACAATACGGATTTAGGTGTTAATGAGTA
AATCCGGTGTCGTCTCTCTTATAAATTCGTTTTTTTGAAACATCTTATAA
ATTCGTTTTACTTAAATTGTTGAACATGCATCATAGCACCATATGAAAAC
AGGCAGCACATAAGACAAGAGATGACTCAACATATTATTCTGGAGCTAAA
TAGTATCGCTTGCATGTAACATATATATTCTTTCGAAACTAAATAGTATC
ATCTTGCATGTAAAATTGTCTAGTCAATGAAACAAATACCTATATATATT
CTTTCGAAGCTAAATAGTATCACCTTGCATGTAAAACTGTCTAGTCAATA
AAACAAATACTATTTATCACAGCACATACATTGACAGCGTAGAGAATCCA
TGTCAAGCAGTTGTTTTTATTCGCATAATATGTACTCCCTCCGTCCCCCT
TTAGCTATATACGTTGGAGGACGGGGACGCGGCACGGATTTTAATGCTCC
GGTAAAGTATAGCTCTATAACTTATTTTTAAGATTTTTTTTAATAAAAAT
TTGGATGTTATATTTTTATTCAGAAAAAGAAAATTTTAAAAATAAGTTAT
AGATCTATATTTTATAAGAGCATTGAAGTGCGTGTCGAGCAGTGAAAAAG
AAACGTATAGAATTAAATGGGACGGAGGGAGTATATGATTTTCTGTTTTT
TAAAATAATGCAAGAGTGCCTTATGATCCTTGGTCAAGATATAGTCAATT
TGACCAATAAAAATAGAAATATAACAATTAAAAAAAACGGAGGGAGTATT
ATTTTAAATCGATATTAAGAGGTTGTTTGGTAGACAGGAAATTAGTCAGG
TATTTAAAATACCTGGGAAGTGCTCACATATGCAGTTGTTTGGTATACCT
AAAATACAGGAAGTTGAAATCACCAGGAAATTACATTAGCAGTAGAACGT
AGGAATTTACTTACCCACTCCCCCCTCGGTTAATATAACATAAAAATATA
TAATCCACTCTAAAATAATATACTAATACATATAATATTAATAATAATTA
ATTAAATTTAAAAATTATAATTTTTATTTATTTATCATGTGTAACTCAAA
TTATTATTTTGGAATAAACATAAATTTAATTTTTAAATAATATACCGGGG
AAAAACATAAAATATTCTAAAATAATATATTAATACATATAATAGTTGAA
ATAATTAGTAAAATTTTGAAAAATTATAAGATTGTTATTATTATTTTTTT
ATTTTATGTAGCTCAAAATATTATTGTTGGATTATATTTCTTAATTAACA
AAATTCTAGAATATGTTCATTTAATTTAATAAAAGAATAAAAAAATGACA
AGATATTAATAATATTATTTTGTCAGAACTTTATAAATATCAAAAGTCGG
GAATAAATTTGAATACTTAATTTGTTTAATAAATTAATATATAAATATTT
ATATAAAATATATCTTAGGTCAAGTTTATGATAAGGAAGAATAATATATA
AAAAATATTGATCAATAAATTTTTATAATAAATTAACGAATAAAAGTATT
ATTCAAAATTATTAATAATAAATTTATAATTTAGTTAAACAAAATAATGA
ACATAATTAGAATTCAATTATCGACCAAACATGTTTATTACACTTCCCAT
ATAATTTTGTCAACCAAACATGTTTATTAAATTTCCCAGGTAGTTTTTAT
GGAAGGGAAGTATAAATCTCTCAGGGAAGTTACTTCCCACATCCAACCAA
ACGAGCACTAAGATGATTCAAAACAGTATTTATATACTTAATTTGTCCAT
GAATTTTGCTCACCCGTCACCACCACATGCCGCACCAGGCCCTGATCATA
TCTCAAGTATAACTTCTCGCAGACGGCCGATCGCCAGAAAAAGTCTAACT
GTCACAAACCGAATTGGCGTTGAACACAAAATGCAATTTTGATTGATGTT
TTAATCTTTTTTAATGTCAACTTAAAATTGTGTTTCGAATATTATTTTGT
TTAATTTTTCAAGATTAATTTTTTAATCTGTTTATTCGGCTTTAGGGTCT
CACGGAACCAAAATCTCGAATTAATTAGGGTATAGTTCCTAAACCTTCTG
TCATAGACCCTAACCGCCCGTCAATTTAATTTCAAGTATAAAGAGTTTTA
AAATTCAAATGTGAACCCTAAAATGTTAATTATTAATTTACATTCCAATA
TCAACATTACCACACCGTTTCTTCACACAGCCCTAAAATCTCAAATTAAT
TAGGGTTCAGGACAACTCTCGAGTTTAAATCCTAACCGTCAGTTTTAATT
TCAAATATTAAAAAATTATTTTAAAACCCAAACACGAAACCTAAAAATGT
TAAAACTGTTAATTTCAAATATTTTTTATAAATAAATACCTAAAACATAA
TATTGTGTTAAATTTATGCTTATTTCGTATTACATTTTAGCGAAGATTGT
AAAATTCAAAAAGTTAGTAGTCATTTTCGTGCACGGTGACATTTGAGGCA
TTATTAGTTATTACTCGTGGCTCTCGGATCGTTTATGTCGTCGGTTTATA
GGCCGTTTAAACAAAAAATGGAATCGTCTTCCTTTGCAATTACTCGACTG
AGTCCGACTCGGTCTCTGTTTGATTCCATCATTTGACTCGGTGAGTCCAC
ACGCCCTCTCTTCTTCCTTCTCGAAATTATTAACGTCGTCAAACCAACCC
GCTCAGTTTGTCAACAAACATATTTCTCAATCCGTGTGTGCCCTTTTCCG
TCATTTCACACCCTCCCTCAGCAATTACACACTGCTCATCATCTTCTTCC
TCATACACGCATATATAGACACACATATTTATATCTGTGTATTGTTATCG
ATGATTCGGCTTCTCCAAACCCTAGCTTTCCCCGAGGTAATTTCTCATCC
ATTTTTCGATTTTGAATCGTATGTAGCTGTATGCCTTACTTGATATTCTG
TTGTGATTCAACTCGTTACTTGTTAATCTGTTATGAATCAGTTAGTTGTT
TCTCTCACTGTTTTAATCAGCTTTTAATTTGGTCTTATATGTGTGTGTGT
GTGAGAGAGAGAGAGGTAGAGCGGGGGAGGGAGAGAGAGAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGAGGGGGGGGGGGGGGGGATATGGGGATGACATATTTATCC
GACCCGATGGATACCCGACCGGTTCCAAACCGATTGCATCTACCCAAACC
CGATTTTTTTGGATTTGGATCTAATTTTTAGATCCGAAAAGTTTGGATCT
GGGTCTGGATCTTAAGTATTCCTAACTGAGGTAGAGGGGAGGGTGGGAGA
GAGGGAGAGAGAAGGAGGGAGGGAGCTCAAGACTTGTATATTCATGTCCA
TGTAAGTGTTTGTATTGCTTGAACGTCTGTTTTTTTAATCAATTAATGTT
TATAGTCTTTTTTTTGCTAGGGTTTTAATTTAGGTTTTTACTTGATGTGT
GTTGTTATTTTTATATGTTTTGACAACTGAAGATGTGTTACTTTTTACGG
ATAGGTTGATATTTGATTGACAAGTGGTGATTTGTTATGTTGAATGGTGA
TTGAGAAACGTAAAGTAAACGGTTTAGGATTTGATTCCGAGATGTCCTCT
AAGAGTAGGGAGAGTATGTCGACTGATGAAGATGAGTTTTTGGATGATGT
TTTTTCGGATGAGGAGGATGACGATGATGATGAATTTAATGATTGTGATT
CTGGCGCGGGGTCTTTGTTAGAATTGGGGGAAACTGGAGCAGAGTATGTA
CAAGTTGGGGATCAGACTTGTAGTATTCCGTTGGAGTTGTATGATCTTTC
CAGGTTTGGTGATATTCTGTCTATGGATGTGTGGAATGATGTTTTGACAG
AGGAAGAAAGGTTTGATCTGACAAAGTATCTACCGGATATGGATCAAGAG
ATGTTTATGCGGACATTGAAGGAGCTGTTTACAGGTTGTAATATGCATTT
TGGTAATCCCGTTGATAAGCTTTTTAAATTGTTTAAAGGTGGGCTATGTG
AACCACGGGTCGCGCTTTATAGGCAGGGTTCGATTTTCTTTCAGAACTGC
AACCATTATCATCATCTGCAGAAGTATCAGAACTCGATGGTCACTAATTT
TCATCAGATAAAGGATGCTTGGGCGAATTGCAAGGGATACAGCATTGAAG
AGAAGATCCGAGTGTTGAATATTATGGAAAGTCAAAAGAGCTTAATGCAT
GAAGATATGGAAGACTTGGACACTGACTCAGAAAGGGAAGAATCGGTAGA
TGGCATGTGGAATAGGAGGCTGATGAACCAGAAAGTAGGACAGAAAATAA
GTCATTATTCTGAGGAAAAGCTGAGTTCAGCCTTTGGTTACTCTTCTCGA
GAGAAGCAGGTGGCACTTGATACAGCACATTATGAAAGGCAAAATCCAAA
AGGGACCTTGAAAGTAACTGGGTCAAAGAAATCTGCATCAAAAGAATCAG
CAGGTTGTTACTCTGCTGGTCGTCAGGGCATGAAAATGAAGTCAAGCCCT
TATGGTCTTGCATCAATTTCTTCAAGATATGACATGGCATCTGGAAACAA
TTCACACGCTGCTGTCAGAATGAGAAATCGGGTACCAGATGATAATACTG
ACGGAGAAGCATTGTATAAAGTTGCTGTCCAGAGCAATCGGAGTTTCCCA
AACACTAGTCGGAAGGATGATCCTGCTAACTCTAAAGTTTTAGAGAAGTA
TGAAAATTACAGGGGTGAGAAATATTCTGATATCTTCACAGGCTTACCTT
TGTCTTCAAAAAAGGATTTTTCTGCCTACAATAGGAACAGAACTGTGAAT
CAGTTATCAGATATTGAGTTGTTAACAGCAAATCCATCTAAATCTGTGTT
TTCTCATGAATACGTCAACAATCTTGAATCCCCTGATAACATGCAGCACT
TAAATGTTGGGCAGAGAGTGAAGTTTGAGAAAGGGCACTCTTCAAATTTA
TCGTTGAAAGGAAATCGCGCTGAGTTATCAGATAGAGGTTATCCCTTTCG
GCATGGGACAGCTGAAGACGAGCATTTCTCAACTGATTTATCACCTACTT
ATGGTGATTTAAATGTTAAAAGCAAGTCCAAGTTTGAAAAGAACTCTCCT
GATATTAAAGTGAATGATAGATCTGGTTCAGGGTATAGAGAGAATTCAAA
ACATGAGAACAGGGGCGCGATAGCTAATCAGGATGGACGACGAGTTGTGC
CAAATGTAAAGCGCCGAAAAACTTTCACTTCAGATTCAGACTCATCTGAG
CAATATGAGGATGATAATCCTTTGATGAGGAGCAAGTGGGCTTATCCCGG
TGGTGCCTCAGGTATGAAATCTGTTTCATTTCCTAAGCAGGCTAAATTTG
TCAAAGGGGATGAAAAGATTGATGGATGTGGTGATGAAATTTCCAACATC
CAGAAGAAGATGGGTTTCCATGGTACACATTCATATATTTCAGAAGACAA
TTTCAGCATGAAAGCAAAACAAAAGAATAAGATGGATGATATTGGCAGAA
ATTTTCCTGGACCAGGTAGGATGACTGGTTATAATTACGATGATGATTGG
GGAGAGTGGTCCAAGTTTGGTAGGAATGGTCATGTACAAAATGAACAGAG
CGAAAGGATTTTAATGGCATCCGTGCCTCCTTACAATGTTGGCAGGATGG
AGAAAATAGAGACCATGCATGGCTACTCAATGGCTGACAATGAAGATGAT
TCACTTAAAAGTATATTGGCAAAGCATAACAACACTTCTGGTAAGATGCA
AAATAAAGGTAAAGATATTGGAGCAAGGGACCGACATTTTGAAAGATCTG
ACATGCAGTTATTAGAATGCAATTCTTCGATGAAAAAGCGGAAAGTTAAG
GATGATATGATGATAAACGTAACTGAGCCAAATGAAATTGGTACTCCTGA
AAAAGGAGTTTCTGATCTATCTTCTACTGTAGTGTTAGCTGGAGAAGATG
TCGAAAGCAAATCAGTGAAGAAGCAATTTACATTGATTACTCCTACTGTT
GATGCTGAATTTTCGTTCTCAATCATTCATCTTCTGTCAGCTGTTCGCAT
GGCAATGACAACCATACTTCCTGATGATCCCGTGGACATGGGAAAGCATA
ATGGCAACAATAATGGAGTGCTGAAAGATGATGATGAGGAGAGTAAGCAG
GAGGGCATTGGTGGGGAACTATCTCACCTAAACAGGGATATAATGAACAC
TGAGCGAACAACCGAGCTGAATCTTCCATCTCTTACTGTTCAGGATATTG
TTAACCGTGTAAAATCAAATCCAGGAGATCCTTGTATTCTTGAGACTCAA
GAGCCACTTCAGGATTTGGTCATAGGTGTTCTTAAATTATTATCATCTAA
ATCACCTCCTTTAGGAGCAAAAGGTTGGAAAGCAGTCTTGAAATATGAAA
AATCTACAAAATCCTGGTCCTGGATTGGTCCACGGAGTCCTTCAGATCAG
GAAACTACCGAGGAGGTGACATCTCCTGAAGCTTGGGGTCTNNNNNNNNN
NNNNNNNNNNNNNNNNATTTAAATGTTAAAAGCAAGTCCAAGTTTGAAAA
GAACTCTCCTGATATTAAAGTGAATGATAGATCTGGTTCAGGGTATAGAG
AGAATTCAAAACATGAGAACAGGGGCGCGATAGCTAATCAGGATGGACGA
CGAGTTGTGCCAAATGTAAAGCGCCGAAAAACTTTCACTTCAGATTCAGA
CTCATCTGAGCAATATGAGGATGATAATCCTTTGATGAGGAGCAAGTGGG
CTTATCCCGGTGGTGCCTCAGGTATGAAATCTGTTTCATTTCCTAAGCAG
GCTAAATTTGTCAAAGGGGATGAAAAGATTGATGGATGTGGTGATGAAAT
TTCCAACATCCAGAAGAAGATGGGTTTCCATGGTACACATTCATATATTT
CAGAAGACAATTTCAGCATGAAAGCAAAACAAAAGAATAAGATGGATGAT
ATTGGCAGAAATTTTCCTGGACCAGGTAGGATGACTGGTTATAATTACGA
TGATGATTGGGGAGAGTGGTCCAAGTTTGGTAGGAATGGTCATGTACAAA
ATGAACAGAGCGAAAGGATTTTAATGGCATCCGTGCCTCCTTACAATGTT
GGCAGGATGGAGAAAATAGAGACCATGCATGGCTACTCAATGGCTGACAA
TGAAGATGATTCACTTAAAAGTATATTGGCAAAGCATAACAACACTTCTG
GTAAGATGCAAAATAAAGGTAAAGATATTGGAGCAAGGGACCGACATTTT
GAAAGATCTGACATGCAGTTATTAGAATGCAATTCTTCGATGAAAAAGCG
GAAAGTTAAGGATGATATGATGATAAACGTAACTGAGCCAAATGAAATTG
GTACTCCTGAAAAAGGAGTTTCTGATCTATCTTCTACTGTAGTGTTAGCT
GGAGAAGATGTCGAAAGCAAATCAGTGAAGAAGCAATTTACATTGATTAC
TCCTACTGTTGATGCTGAATTTTCGTTCTCAATCATTCATCTTCTGTCAG
CTGTTCGCATGGCAATGACAACCATACTTCCTGATGATCCCGTGGACATG
GGAAAGCATAATGGCAACAATAATGGAGTGCTGAAAGATGATGATGAGGA
GAGTAAGCAGGAGGGCATTGGTGGGGAACTATCTCACCTAAACAGGGATA
TAATGAACACTGAGCGAACAACCGAGCTGAATCTTCCATCTCTTACTGTT
CAGGATATTGTTAACCGTGTAAAATCAAATCCAGGAGATCCTTGTATTCT
TGAGACTCAAGAGCCACTTCAGGATTTGGTCATAGGTGTTCTTAAATTAT
TATCATCTAAATCACCTCCTTTAGGAGCAAAAGGTTGGAAAGCAGTCTTG
AAATATGAAAAATCTACAAAATCCTGGTCCTGGATTGGTCCACGGAGTCC
TTCAGATCAGGAAACTACCGAGGAGGTGACATCTCCTGAAGCTTGGGGTC
TCCCACGGAAAATGCTAGTTAAGCTAGTCGACTCATTTGCAAATTGGTTG
GAAAGTAGTCAAGAGACCCTCCGACTAATTGGAAGTCTTCCTGCCCCTCC
GTTGACATTAATGCAGCTTAACATTGATGAGAAAGAAAGGTTTAAGGACT
TGAGAGCTCAGAAGAGTCTAAACACCATAAGCCAAAGCTGTGACGAGGTA
AGAAGTTATTTTCGCAAGGAGGAAGTTCTCAGATACGCAATACCTGACAG
GGCCTTCTGCTACACTGCTGCTGATGGTAAAAAATCCTTTGTAGCTCCCT
TAAGAAGGTGTGGTGGTAAACTAACATCAAAAGCCCGAGAGCACTTTTTG
TTGAAGCAGGATCGCCCGCCGCATGTTACAATTCTTTGCCTTGTCAGAGA
TGCAGCTGCTAGGTTGCCTGGAAGTATTGGAACAAGGGCTGATGTCTGTA
CTTTAATTAGAGATTCCCAGTATGTAGTGGAAGATGTCTCTGATGCACAA
GTCAATCAAGTTGTTAGTGGGGCCTTGGATCGTCTGCATTATGAACGTGA
TCCTTGTGTTCAATTTGATGGTGAGAGGAAATTATGGATGTATTTGCATA
GAGACAGAGAAGAGGAAGATTTTGAGGATGATGGGACGTCATCTACTAAA
AAGTGGAAGAGGCCAAAAAAAGAAGCTCCTGACTCATCTGAACGGGGATT
GGTGACTGTGGCTAATAATGCGAGTATAGAAGGGGGCCAAACTCAGATTG
AACCAAGCTCTAATCTTATTGTTGACTCTACATGCATGGATGAAGATAAA
AGGGTGGATCATCTGTATTATAATGATGGGCAGAATGAAGTCAACCTTGA
GGGTCTTGACCAGCCTGGGATACATTATAGCTCTGATCTTATTGTTGACC
CTTCCGGCATGGTTGACCATAAAATGGTAGATCATTTGCATTATGATGAT
AGACATATGGAAGTCAACATTGGGGGTCTTGGCCTAATTGGGATTCGTTC
AGGCTCTGGTCTTAATGTTGATACTTCATGTATGGATGATGGTAGAAGGG
TGGATCATTTGCAGTATAGTGATAAACATATGGAAGTTAGCATTGAGTGT
CTTGACCAAACTGGGATTCATTTAAGCTCTGAAGTTCGTGTTGACCCTTT
ATGCATAGCTGATAATAAAAGAATGGATCATTTGAATTACAATGATAGAG
AAATGGAAGTTAACATTGATGGTCTCGAATCTAAGCAAGGGATCATGGAC
CAAGGTCCTCCAATGGTGTGGCAGGCTCATGGCTTAAATTCCATCCAGGA
GAACAGCTTGTTATGCATAGAAAATTCCAGACCCGGTGATTTTGACAATA
GGAATTTGGGCAGATGAAACCAGCTTATGTTAGGAAGAAGCTCATCCGGA
ATAATGCTCAAGGTGAGCTAGTGTTTCTCAGCCCCTACTCCAAATCAGCT
GGTCATAGATTTAGTTGGATTTGGCTGTTGGTATTTTTGTGAACTATCTT
ATCTGTAGTGTCAATTATTTTGCCTTTTTAAGTGATACTGTGTAGTGGAA
GCAAGCAGCAATAATAATATCTCTGGTGGTAATAAATAAAAATAGAACTT
TAAGACCAA
Sequence Length: 
16759
Sequence Checksum: 
5aee618764155628d2d930c1453d73a8
View location in JBrowse: 
DCARv2_Chr5:33912656..33929414+
Gene: 
LOC108221994
Gene Biotype: 
protein_coding
Gbkey: 
Gene