| NCBI Gene |  |
|---|
| Relationships |
|---|
| The mRNA, XM_017363599.1, is a part of gene, LOC108196348. |
| The genetic_marker, MK003027 K0471, is located in gene, LOC108196348. |
| The mRNA, XM_017363600.1, is a part of gene, LOC108196348. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017363599.1 | XM_017363599.1 | mRNA | DCARv2_Chr7:16413168..16423120 |
| XM_017363600.1 | XM_017363600.1 | mRNA | DCARv2_Chr7:16413168..16422342 |
ATCACGAGCACAGTACAATGAGAGAAAACACCCACTTGTAACTTGTAAGT
TGTAACTTGTGCATATCCAAGTACTACCAAACTCAAACCCCAACCCCCCT
TGAAACTCTGTTTTGTCATTCATATGCTCTCAATCTAAATCCCCATTTTT
CACATTCCTCTGTGCCAAAACAAACATATGTCCTATAATCACTTATGGCT
ATAACATCATGTCAAATAAACTGGGACAATGTCCTTGAATTTACAAAGAT
TGCACAACACAAGGGTGATGATCCTATGTTGTGGGCCATACAGCTCTCTT
CTAATCTTAACTCTGCTGGGGTTTCTTTGCCCTCACCTCAGCTCGCCACC
CTTTTGGTCTCGCACATTTGTTGGGATAATAATGTCCCCGTTGCTTGGAA
ATTTCTTGAAAAAGCTCTGGTTTTTAATATTGTGCCTCCTATTCTTGTTC
TTGCTTTGCTCTCCAAAAGGTATGCTTGTTTTTGTTTGATGTGGTCATTT
TGTGTTTCATTTGTATTGTGGGGTTTTAGTGAATGGGTTTTTTGTATTTT
CTGCAATTGTGCTTGGTTGCCTTTTTTCTTGTTGTTGTTACTGTTTGATT
CAAGAAATGGGTTTTTGTAGATCATGACAATGATCTTATGTAAGTAAAAA
GTAATTGATTTGTATATATTGAAGTTTAACTTCTGTTTGGGCTGGGATGA
CAAATTTCAGCCTATTTGTTTGCTGTTTGATGGTGTTTTCAATAGTTTTG
TAAAAGATTATTATCATCATAATGATGTCTGATTTTGTTAATTCCTCCTC
CTTGTGATGACTGCTGGTTTTGTGAAATAGCATGTGAGGCTTTGAAAAAG
ATGGTTAAATCCGAGCAACACATAAGAAAAAAAAGCTGTATTATGCAGTT
TGATATCTGCTTGCCATATTTTATTTGTAATCTTGCCGTTGAGTGCCATA
GTTTGCTGATACTGCTAACAATCATTAATGAAGATGTGTTTTCAAGTACT
TGCGCGAAGTCTGTTTATAGTTACAACAACTTATCTCATACTACTATTCC
TTGTTTTCTTCAGCATTATTCCAGAGCGACATTCTCAGCCTGCAGCATTT
AGGCTATACATGGAACTTCTCAAGAGGCATGCCTTCACTCTCATATCGCA
ATTGAAGTGGCCGAATAGCCATATGTAAGTAATCATCATAACTGTGTTTC
TTATGCTTAAAACATCATTAGCAACAGGTAGCATGTATGGTGATGGAAGT
GCTTATAATGATTTTAACTTGAATTGTATTAAGATACATCATATTATACA
CTCTTATATCTTTGAATTAGCCTGGTATCTGTATCACTCAGAATCGTTAA
ATCCAGGTATGTAAGCAAAGCTAAATATACAGAGGCACTTCACATTTTCT
CTACAAAATTAGTATTGATCACGAATCTAAATCAAATTCTATTTTATATA
ATGGATTATGTATGAAACCGAAAAAAAGGGTAGGGATGCTTAATCACTTT
TGGACTTACATCAAGAACTTATGCTCAAGAGACAAAGATATTCATTCCTT
AGACTATGTAATCTAGGGAATATCTTTGTGAACCTAATTAGAATATGCAC
ACGAACATGGGCAAGTACGTGATTGTCATACCTGTTTTCACTTGAAAAGG
CCTGAGCATGTTTTGAATGCAATACTTTACAACACCAGACCTTTGTTCTA
TGCACCAATAGTCTAACGAGGTGAGCAGCGCATCACTTAGACATTCATAG
AAATTCTTTTTGTCAGATTTGTTTCCTTGTGAGTACTACACTCGCTTAGT
TATGACTATAATCTGTGGTTTTGTTCTATTTGATATATTTTGATCCACGT
GACATTGATGCAATGTGCCTATTTATACTCCACCTTACCTCCTTGTGGAT
ATGCCTACTTATTGAAGTATATGTACCTATTTTGGAGTTTAAGGTATTAG
TTTTTCTTGTCCAGTATGACTTTCAATAAAGATTTTTCTGTTTGCAGTTC
TGTTTATAGTTTAAAAAATTTCTCACACTTTCAGGATCATCAATTCTGTT
GACAAAGTTCTCCAGCTTTCTGAATTATTTGGTGTCCCAGCCGGTGAACC
TGGTATTCTTGTAGTAGAATTTATTTTTTCAATTGCGTGGCAGTTACTAG
ATGCCGCACTGGATGATGAAGGGTTGCTGGAACTTGCACCAAAGAAAAAA
TTCGGATGGATATTCAAACCTGAGAATATGGATATAGATGGTCAAGGTAA
TTATAATGAGAAGAGGACCACCCATCAGGAGAGATTGAAGAGTGTTAATA
CTGTGATGGCCATAGAGTTATTTGGTCAATTTCTGCAAAACAAAGCTACT
TTTGGAATGCTTCATTTGGCACGCAGAAACATGTACATATTTCTTTCGTT
TTCCAACTTCTTGCAGTTTTCTGTTGCTATGAAGTATTGATCATTAAAAA
TTAATTTGGTCAACTTGATGCATGAAATTAATAGAGAACACTTACCCTAT
CACCTGTCATCTTCAAAGCTTTTGAGATGGCTCTATAGGAATGTAGGAAT
CACGTAACTATTTAATATTTTTAGGGCATCTTTGTTTTACATTATAAGCT
AAATTACTGATAAATTCTATTGACTGTTTGTTTGATAAGTAAAAGATACT
TATGTGTTAATGTTTGACTTGTAAGTTAAATTTTGAGATGTACAAAATGT
GTACTTCAGTAATATTTTATTTTACAATTGACTTCATATCAATGAACACT
TAAAATTTTATAGGTAACTTCTAGCACTTCTTCTTTACTTAGAAGTTCTT
TTGACTTTTATTTATTAGTATTACTTCCATGATCTACATATTACTAATAA
AAAATATTCAAGCTAATAGTAGCATAAAAGACAATAAAATATGCATTTTA
CTTGTAAGTAATAGCAGTAAATTTAAGTGAATATTACTTTTTATAAACCA
AATGGGCCCTTAATATTACCGTGATCCTGATCATTGCTTGCAACTCTGTA
AGGCCTGCACATTGGAGAGATTTCATCGAGCATGTACAGTTGCTTATAGT
TAATTCATCAGCCTTGAGAAATTCAAAAGTTATGACGCCGGAGCTTCTTG
TCCAATTGATATCAGCTACTCGCAAAGTCATGTCCCGAGAATGTAAAACA
AGTTATCTTCAGGAGTTCCAAGAGATACTCGCGTGTGATCCTCTGGCTTC
TTCTGCAGGTCTCTGTCATGGAACTAGTCGTTCTGCAATTTGGCTACCTC
TTGATTTAGTTCTAGAAGATGCAATGGATGCTTCACAAGTCAATGCAACT
AGTGCCATTGAGATTGTTACTGGTAAAATCTACTTTACTGTTAATCAATG
AAAGAAGCAAAAGATGGTATTATTCATTCATAAGAAAATTTAAAACTACC
AACATATTGGATTCGTATATGTCAGGTTCTGTAAAGGCTCTTCAAGCAAT
GAGTGGTAGCACTTGGTATGACTGTTTCTTAGGTCTTTGGATGGCAGCTT
TACGCCTTGTTCAAAGGGTTTGGTTTTTCTAACTTATCATTTTCTTAAAA
TTTATAAACAAATTTTGATTGATTTTGTTCCAATCTTATTTCTTCATCAA
TGTTGTAGGAAAGAGATCCCATTGAGGGGCCTGTGCCACACCTCGTCACT
CGCTTGAGCATGTTGTTGTCTATTGCAACTCTCGTCATAGTTAATCTCAT
TAAAGAAGAGGAAATTGCTTTAACTGCAGAGGCAGAAGTCCACAATGAAA
AACACAGTAAAGAACGTGTTCCTGGAAAGCGGCGTAGAGACTTGGTTACT
TGCTTGCAGAAGTTGGGGGATTTTAAGACTCTGTTGACTCCACCTGAATC
AGTTATCCCTGCAGCCAATCAGGCTGCAGCAAAAGCAATGATGTTTATAG
CAACCATCAATGCTGGCAATGCGTACTCTGACTGTGCCAGCATAAAAGAC
ACGTCTATTAAATGTTGTAAGTGGTATCTTTCGTAACTCATGTACGATCA
CTAATATCTGATGTTTCAGTTTCCAGAATATATTCACATGTGAGTTTTTT
TTATGTCTGGCGCCTGTAGTGCATATGCCACCGTAGATGTTTACACTAAG
GGGGCTTTTGGATGGTAGATTGAAATGGGAATCAAGAATGGGAATGCAGG
TATGAGAATGGGTATCCCAAGGGGTGGGGAATGAATTACCCACCAAGTGG
GAATGGGGTTCCCATTCCCCACAACAAAATTGCTAATCCAAACACCAACA
CATGGGTTTGAGGTTTTGATTCCTGTTAACCGGGCTCATTAATCATGAAC
GAAACGTCCCCTAAGTGAATGAATTTTCTTAGCGTGACTTATCTTTCAAA
TGACAAAATCTTTAGGTAGATCGATATTGCCTAGTTAAGATCTTTACCTG
GGTTAATGGGCATATGCATATAAAATGAGTAACAAAAGGTGTTGGAAACG
GACCTGATATTAGATGTATTGAACCCATTTTATGAAACAGGCGAGTTAAC
ATCTGTAGTATCACCACCCATAACTGTCTTAGGGTTCATACATGAGCACT
TCAATGAGACAAGAACAGAAACAAAAGATAAAGGTCGACCTATTGGACAA
TTGTCTCTTCACACTTAATTCTTCATGTGCCTAATTATTTAAGGAGGTAA
TTTATTGTAAAAGCAAAAGTAGATTTATTTTCATAGAACTTGAACTTCCC
TCGAATTCTGTGCATAGAACTTGAAATTCCCTCGAATTCTTAATCTTTAT
TGATAATGTCTAAACTGACTAGCATATATTTTTATTTGCAGCTGGAAACT
TGCACCATTTGATTATTGAGGCTTGTATCGCACGAAAACTACTAGACACG
TCAGTGTACTTTTGGCCAGGTTATGTGAACGGACTTACAGACCAAATATC
TCATAATGTGCCTGTCCAAGTTCCTGGTTGGTCATCATTCATGAAGGGGG
GTCAACTAACTCCAGTAGTAATTAATGCTTTAGTTTCATCTCCGGCTTCA
AGGTATACACAAGGCCCTTAGGGTATCCATTTTTGTAATTGTCATAGAGT
AATCTTCTACACCAGTCATCTGATCAATGTTACACTCTTCTATGTCAAAG
CCGATATTACTACTAAGGTCCTATATAACATTTGAATCTACGTACGTTAC
TCTAACACAGACTTTTCTGACAATAAATCTAAAAATTCATTGATGTTGAG
CAATTTGATTCAGTGTCGGAACATTTCAAAACTAAGCTTTACTTTCAGTT
TTTTTTAAGTACCTGTGCCCCCCTGCTTGTCACCCAACTAATCTACTATA
AATAAGAATGGTGAAGTGACATATATCTATATACTAATGTTTTGGAAAGC
TTCAAGTTATGGGTCCATGGACCTTTTCAAGTTTTAACCTTCCATGGTAA
TAGAGAAATACTGGTCATTAACATCTAACTGGTTGAGTGGAGGTCCTTCG
CAGATTCTTCAAGCGAAAATATTTTATTTTTGTAAACTAGTTTTATCAAT
TACTAAATATGTACCACCAACTCCTTTAGCCCTTAGATCTGTATGTATTA
CATTACACATGTTGGAACTTTATGAAGTCTTTATTATTACTATAACATAT
TTTAGCTACTTTTTTGGTGTTTAGTTGATTACTGTGCCTCTTAACCATGT
TTAAAACACCAACTGAAGCAATGTGTATATCTATTTTCATATTTGGACTT
GGACATGAAAGCTTTAAAGATCAATGACATTATAGTATTCACAGCAAGCG
CCAGTTGTTTAACTGTAGAATGTCTCAACAAATTTCTATATTTTGATCCC
ATTCACAACGTCACTATTAAAACACGAATAGAAAACGGTGTATATATTCA
TAGGTTCGATACAAAGGATGGATATGTGAAAATCATTTATGTAAATTATT
TACTCTATATTTAAATATGGAGACAGTTTCTGCCTTCGCATATGATGCTA
ATAAACCTATAAATATTTAATAGTTTCCCCCTGCCTCCCTATGTAAGAAA
GTACAATGGAAAATATTTTTACTAATATATCCTTGTCCATAGCCAGGTCT
TCAGTTATACGTTTTTTTTTCCTGCTGTTGGCTATATCAGATGCTCTCAT
TTATTGATTAGACAAGGTTAAGCAACTGAAATTTAAGCTCATAAATTTGA
TGGAAGCTTCGCAGAACTTGATAAAATCTTTGAGATTGCCGTTCAAGGAT
CAGATGATGACAAGACAACAGCTGCTACTATCCTTTGTGGTGCTTCTTTA
AATTGTGGTTGGAATGTTCAGGTAGTCTACACTGAAGCATTTGTAATAGG
ATCATCCACATAAAATAAAACAAGTCATTAATTTCTTGGACATGCATGCT
TTACTAGGTCAACGAAGCCAACATCATTATCTTCTCTTTATTTAGCCATG
TTGAAGTGCAGATATGGTAACTGTAGTATATTTTGACATTTTCAGGAACA
CACTGTTTATTTCATAACAAGATTGTTGTGTCTTCCTGTTCCTGCTGATT
ATTCTGGTACTGACAGCCATCTGATAAGATATGCTCCAATGTTGAATGTC
CTTCTTGTGGGTATAGCAACAGTTGACTGTGTTCAGATATTCTCTTTGCA
TGGCTTGGTATGTGAAGCTTATACTGGTGTACACATATGTATATTTATAA
TAAATATGCTCAGTAGTGTTCTGAAAATTTCTGTCTCACTAGCACAAACT
CTAATTTATTGATCTTACTTTTAGGTTCCACAACTTGCTGGTGCGCTGAT
GCCAATCTGTGAAGTATTTGGGTCATGTGTGCCAAATGTTTCATGGACTT
CAGCAACAGGAGAAGAGATTTCTGCCCATGCAGTATTCTCAAATGCATTT
GCACTTCTTCTAATGCTATGGAGATTTAATCATCCACCTCTAGAACATGG
AGTAGGCGAGGTACCGCCAGTAGGAACCCAGCTTACTCCTGAGTACCTCT
TACAAGTAAGAAATTCCCAGTTAGTATGCAATGAAAATGTTTACTGGGAC
CAAAATAGGCGGAGACTTGCTGCTGATGCAAATTCGTCATTATCTGAACC
CATATTCGTTGATACCTTTCCAAAATTAAAAGTATGGTACCGTCAGCATT
TGGCATGCATCGCTTCACCACTCTCTGGCCTTGTTCATGGAACTCCTGTT
CATCAGATTGTAAATGACCTTCTTACTATGATGTTCAAGAAGATTATAAA
TAATGGAAACCAGACTATGACATCCGCAATATCTGGTAGTACTGCCTCAT
CTGAAATAGGTAAAGAAACAGGCTCAAGGCCTATGTTAGCAGGTTGGGAT
ATTCTTGAAGCTGTTCCTTTTGTTGTTGATGCTGCTTTAACAGCATGCGC
GCATGGAAGACTTTCCCCTCGTGAACTGTGTACAGGTTAGTCTCTGATAT
GAGTATTTGATCTATTGTTTTATTAGCTGCAAGTACATTGAGTTTTACCA
ACATTTGAGGTTTTCTTATGGATTCTTGTCAGTTTCACACATGCTAGAAA
GTAAATTCTCCTTGCTTGCATTCAAAAATTCACTCCACTCAACTGCTGAA
CTCTCATTTATTGAATCATGACAATTTTGTCTGAACCCAACTTGTTTGCA
GTCACCAATCTGTGATCCTTTTGCAATACTCTTGGTACATTTGATTTAAC
ACAAAGGGTTTTGCTGCAGTTTCTGGAAACCTTAGACAGAATTTGAAGTT
GATGATTACAAAAATTTCTTCATTCTGTGGCAGGGCTTAAAGATTTAGCT
GATTTTCTTCCTGCATCCTTAGCATCCATCGTAAGTTACTTTTCGGCGGA
AGTAAGTCGTGGTGTATGGAAACCAGTATTTATGAATGGAGTAGATTGGC
CAAGTCCGGCTGCAAATCTGGCAAATGTTGAAGAACAAATTAAGAAGATC
CTAGCTGCTACTGGTGTAGATGTGCCAAGCCTTGTTGCAGGTTACCTTCC
TCAAACCACAAATTATTACCAAAAAACCTTTTAGTAAAAAGGACCATCAG
TCTATCACACAAGTTATAGAACATCGAGTTGGGTCTTGATACTAGATCAC
ATTTTAAAACTTTTGACAGTCTTGGTTGCAGGATTAGGAAGTTTTTATCT
ATAAATAGATAAATAGATAGTTCAATCAATGTCAACACTTGTGCCATGTT
TGGGGTGGAATAGAATGGATGTGGTAATGGAATAAATAATTTGGAAAAAA
ATAGAGCGCAAAAAGAAGGATGCAGGGCTTAAACTGAAAAGTGTGATAGC
AGTGGTTACAGTTTACTAGAAGATCTGAGGAGAAGAAAAAAGTAATTAAA
TTATGTGACCATTTAGTTGGAGGAATTAAACTTTATATATTTTGTGTACT
TATCCAGCTGTGAATACCTTATATATAGTAAGCAATGGTAACTTGGTCTA
CCTACAGGCTACAACGAATGTTACAAATTTCTATTTTCTGTTTTTCTGAG
GCCGGCTATTCTAAGATTATGGATTACAACTTTTTCCTTGCAGGGGGGAG
TTCACCGGCAACGCTTCCACTGCCTTTGGCTGCCTTTGTAAGCCTTACAA
TAACTTACAAACTAGACAAAGACTCACAGCGGTTCCTCAATCTGGCTGGT
CCGGCCTTGGAGTCCCTTGCAGCCGGTTGCCCATGGCCATGCATGCCAAT
TGTGGCATCCTTGTGGACCCAAAAGGCAAAACGCTGGAGTGATTTTCTCA
TCTTCTCTGCTTCACGTACTGTCTTTCTCCATGACAATGGTGCAGTAATT
CAGCTTCTTAAGAGTTGCTTTACTGCTGCACTTGGGCTGAAAAGCAGCCT
TACTTCAAGCAGTGGAGGCGTTGGACCGTTACTTGGGCATGGATTTGAAT
CCCAATCTCATGGTGAGTTATCCCCAGTTGCCCCTGGGATTTTATACTTG
CGCTCGTATAGGTCCATCAGAGATATAATTTTCATGAGAGAAGAAATTAT
TTCTCTATTAATGCAGTCTGTAAAAGATATAGTTTGCAATGGGTTTCGAA
GAGAACGAATAGCGAAGCTGAAGAAAGCCAAAAATGGAATGAAGTATGGG
CAGGTTTCACTTGCTACTGTTATGACAAAGGTTAAATTAGCTGCATCACT
GGCAGCTACTCTAGCATGGTTTGGGGGCATTCAGTTGGTTCAGTCATTAA
TAAAAGAAACTCTACCATCATGGTTTATATCTGTTCATAGATCTCAGCAT
GAAGATGATGCAGGAGGCGCAGTTGCAATGCTTGGCGGATATGCATTAGC
ACATTTTGCTTTGCTATGTGGAGCTCTCGCTTGGGGTGTGGACACATCCT
CGTCAGCATCAAAGCGCCGGCCTAAAATTTTAGGCTATCACATGGAATTT
CTTGCAAGTGCTCTGGACGGGAAAATATCACTCGGTTGTGATCCAGCCAC
TTGGCGTGCATATGTGTCGGGTTTTTCGAGTCTGATGGTAGGATGCACAC
CAAATTGGTTGTCAGAGCTAGATGTACAAGTGTTGAAAAGGATCAGCAAG
GGGCTTATGCATTGGAATGAGGAACTTGCTCTTTCTTTGCTAGCAGCAGG
TGGCGTTGGTACAATGGGAGCAGCTGCTGAACTGATCGGCCAAAGTAGTC
TATAGAGTTGAAATTAATTTTTTAACCAAAGTTTTCTTTAGGTCCAAATC
ATTTTAATAGAAGTATTGTCATCGAGCTCTCAGGTATGTTTGCATATCTA
GGTTTCTTAATCTTTGTATGGGAGACGATAGACTCAAATTCTATTGGTAA
ATATAATCTGTTTACTTGTTGAGCTAATTTCCATTCTGCTCATATGCCCT
TGAACATATAGGGCGGTTGGTATATCTAACAAGTGACAGGATTGTGGTGC
AAGAAGCCTTCACAAGTTGTTGATTGTATTCTGATTTTGTGCCTCTGTAT
CGTAATTGTTACTCCCTCTGTCAATCATTTTTTTTACAATTTCCTTTTTG
GA