| NCBI Gene |  |
|---|
| Relationships |
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| The mRNA, XM_017362079.1, is a part of gene, LOC108195127. |
| The genetic_marker, MK006569 K4013, is located in gene, LOC108195127. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| XM_017362079.1 | XM_017362079.1 | mRNA | DCARv2_Chr7:31580397..31590093 |
TGAAATTTGTCGGTTTGGGCAGAGAAGCCAAGTCCGGTAGAGATTCAACT
AACACAAATAATTTTGACAAGTATCATCAACTCCAATAGCATTACAATTA
TAATATCTTAAGAGATTTGAAAGTTCAATGCGGAGGAGAAGAACACAGAA
AAGTTGAATCGAAATCAAACTCGAAGATGGACGTGGAGAAGGCGTCGCTG
TGTAATTGCGTAGTGAATTTCCTGTTGGAGGAGAATTACTTGTTATCGGC
TTTCGAGCTTCTTCACGAGCTTCTCGATGACGGTCGCGATGCTCACGCCA
TTCGCCTCAAAGAGTTCTTCGAGAATCCGTCTCAGTTTCCTCCCGATCAG
ATCTCTCGCTTCAATTCTCTCCGAGGTCTCTCTCTCCCTCTCTCCCTCCC
TCCCTCGCTCTCTCTCTCTCCCTCTCCCTCCCTCCCTCCCTCCCTCTCTC
TCTCGCTCACTCTCCCGCTCTCTCCCCCTCTCTCTCCCCCCCCTCTCTCT
CATCTCAGCATTATGAAGTTATATACATCTGTATTTAATTTCAACGTTGT
TATGAGTATTATTCTTGCTATCAACTGTTTGTTGCACGTATAGACGAAAT
GAAATAGTCGTTGCTTTGATTTTGGTATGAATTTGTTCAACTTTGATTTT
GGTATATTTGCTCAACTTATCAAAGAATGATCGTTAAACTTGTTTGTACG
ACACTTGATAGAACTAGACTTGGAAGTCGAAACACTGGATCACAATCTTT
CGAGAGTGTTTGCTTCATTATGCTTCAGAAGTAGATTAAGTTTTACGAAT
GACTTCAGATTTATGATGTGCTGATGATGTGTGATTCTCTAGTGATATTT
CTACTACTTTTTTTTAGCGGATAAATGCAATGTAAAATTGTAGTGTCTGC
AATATTTGTATTTGGTTTGGACTGTATACAATAGCATATATAACATGCTC
TAGGATTGATCTTCACTTAGAGGTTGTTGATCTTATGATTCAGTTTACTT
TAGCCTCTATTTGTCTGTAAGTTCTAAAGTATTCGCTTATTTTCCTAATT
AACATCCTGCAATTTATGATTGAAGCATGGGACTTGGTCAATCTTTCTTG
CCACTGCATACTAAAAGCCCTATGTTGAATCTTTTTGATTTTTGATATGC
TCAATTCTTATGTAATTTCTTTTTAATTCGTCGCACCAGTTGCAGACCCC
CAAACTTTGCTAGAGGAAAAAGAAACACTGGTAGAGAAGCTAGCGATCGC
GGAGTATGAACTTCGTTTAGCCCAAGAAGATGCTACAAAATTAAAGGGTG
AACTGCAAAAGAAAACCGACATCACACCAAGTGAACTAAGCGGTACATCT
CAACTCTGCTTCACATGCTTTTCTTATTTTCTTTGAAGATGTGACACCTA
GTCGATAGAGAATTTTCTTAGGCATAAGGTGCATTTAAGAGAATAGCACA
CCTTAACCAAGATAAAAATCTTTGAATTCCCCCGATTGGACTTGATATGA
AGTTGCAATGAAGAATTGTTATGCACAAGCTCTTATAAAAATTTTATTGT
GCTATGAAACTGGTAATTTCTTAGCATATTTTATGTCAGAAACTACCTTA
CTCTTGGTCAAAATCCGTGTTTGCCACTGGCAGTCTGGTGCCAGACCATT
TATGTAGCTTTAAACTCATTTTTTGCTGCTTTATGTTGTCCGTTTCACTC
CCAATGTGATATGTTTCCTTGATAGTAGAGGCTACATTGGCAAATAAGGT
GTCAGAAGAGTCTGTCTTTCGGACCCTATCATCGTTTTCTACTCGTTTTC
ATATGTGATGTTGGTACTTTCTTATTTAAAGCTTTGTAGATATATCACAA
AAATGTCATACGGATCATAAGATGTTTACTGTAATGCCAATTTAGTATTA
CGTGTTCTACATAGGAAGAAACAACACACCTGTTCCAATTTGAGTTTCCA
TCCATGTCTTATGCAGGGTCGCCTTCAGAGGCTTCTGCTAATTATGAGCC
AAATCCTGAACTACGGAAGAGTGACTCTTCCTTTTCTGAGTTGGGTCCTC
TAAAGGAGCATGAACGCAGAGATCTTAATTGTGCTGTTAAGGAGTATTTG
TTGTTAGCAGGATATCGACTCACTGCAATGACATTTTACGAAGAGGTAAT
TTTTAAAATGTTAAACATTTGACTTATATCGTCTGTGTACACGAATAGGG
CAACGGAACCACTACCATCATCTGTGGTTCCGTGTCTTGTCTGTGGTTCC
GTGTCTAAATGCACTAAATGCAAAAAACACAACACTAAATGCATATCTGT
GGTTCCGTGTCTTGTCTCATGTTATGTATATAATATATAAACAAATATTG
TTAATGTAACATATACAAAATCATTTTTTTATTATAATTTCTGACGATAT
AATGTTAGTTTTACAATTTTCAAACACTGAAATATTATAATTTCAGTCTT
AGAGTTTTAATATCTACTATTTCAATTATTATGAGGTTGTAATTTGTATA
AATTAGACAATCTTCTATATATATACTTCTATACTATACTATCATAATGG
AACATATGTATAATTGGTTGGTTATTGGTTTGGTTTGGTGGGTTCGTTAA
CCAGAGTAATGACCCTGGGACCATTAAGTATAGAAGAGAACTGTTATATC
TTATCCTAAACTTAAAGAAAATTCTATATTTAAAAAATAAAACAATTACA
TAAAGGTCTCAGGCTCTTCTGTTAACAACCTATTACAATTAAATATTTTT
ATTATTTGTTCTGAAGATGCAATGAGTGGGTTTGAATCCCATCAACTACA
TACTATTAGTTACAAATTTATTCGTTGAAAATTAATTTATAACTATATAA
TAACTAATTTTTAATGTTTCATCACTATTGAAATTATAATCTATTATTTA
CACTAAAATATAACTTAAACTTCATTTATTATAAGTATTATTATTTCAAA
TAAATCATGTATAATAATTTAAGCATAAATAAGAAAGTTATAAAAAACTA
AAGGAAACCAGTGCATCGCACGGGGTAATAACTAGCAACTAGTATATGTA
TTTGTTTTGTGTACTTTTGTGAGCCAAACACGACAGTGAATCATTCATGT
GCACTGTCGTATTAGTTTACTTTAAAATTTCGTGAACCAAAAGTAACCCA
AACACTTAAATTTCGTGCCTGTGCTGTCGCTGTGATGTCACGTCATTTAC
AAAATTGCCGGTCTAGTTATAAGAAATTGTATTAAGTTTGAATAGAGAAG
CCTTCCTACTTTTTTGACCAAGTACACATGGATAGATAAGACTTTTAACT
GGTAAGTAAACCTGGTCTGTATATACTTTAACTGGAAGTCAGTGCATGTT
ATATATGTATCTCACATGATACTAGTTGCTGCAACTATCTGGTGTTTAAT
TCTTTCGCAAACATAAATATATTTGGTTTGTCTTCCTGATTTTATGTATC
TTTTTATAATAGCTTTTAGTGGGGGTTAATTAGTTTATTAAAATGCATGT
ACATGTTTGATGTAAAATTGCTAGCATTGTTGTACTCTTATATGTTTACT
TCAGGTTACAGACCAGAACCTAGATGTATGGTCGAAGTCATCTGCATGCG
TTCCAGATGCTTTGCGCCATTACTATTACCAGTACCTTTCGTCGACTGCA
GAGGCTGCAGAGGTACTTCTTCAGACACTCATGGGGTAGGCTAGTTCTTG
TTCTTTATGTGCTCTGAAGGAAATTTTTGCATGTTGTTTGTTAATAATAA
TCAAGCTATATAGAAAACAATTTTTAAACTACTACTAGTAACTGTTTATC
TCTAGATTTCAGTCAGTTCTTCAGATGAAGTAATCATGGGGTCTATCACT
CTTAAATTTACTTATTAATACAATTATTTATCTCCTATTTTACGTTACTT
ACAAGGTTGGCTTGGTGCTACAAACTCCTGGTAGAGTAGTCCATGACACC
ATTTCCTTATTAAGGTATCTGTCTAAAGAAAGTGGCAGGAGACAATCTTC
AATGTTCTACTTTGCGTAATCCAGTAGAAAACGACATTTAGTGTGTAGAG
ACAAATTGATGTATTAAAATTCTAATTTCTTCCTCTATATTTTGTATACA
TGTTTATTTGTTTATTCTTTGGCATCAACCTTATCTTCTTATCAAGACAA
TTACGGTATGCCACAAGCAAGGACTCTAAGCATTGGTCTAGCTTAAGTTT
ACATTCGTGTCATTCTTTAACTTTTAAAATAAGTTTTGGGTTACTTTTTA
TCACTTTCGAGTACACATTGAGAGACCATTAATCGTACCCGCTTCCTAGG
TGTTACTAATCCCATGGAAATGAACTAAAAAGTGCCTATAAATTTTGAGT
GAATAACCTCGTAGTCCAGTGATTATTAATCACGTAGATGCACATTATGT
ATACTTTTATAAAAGGATGCATGTAATTATAATGTATTGGTTAGCGGTTG
CTTGTCCTGAATTGCACATAAATGAGAAGCATTCCTACTGGTGCAGGAGA
AAATTGCCATACTTAGAGAGCACGAATCCTTGCAGAAAGAAATTGATAGA
CTGAAATCTGAAAAGCAGGCTTCAATAAAATACAAAGATTTGGCCGATGG
GCAAGTTATGGCATTAACCAAGTCACTGGAAACTCTGCAAAATAGTATTA
AGGAAAAGGAAATTCTGGTAATACTCAATCACTTTATATCTATGAGCAAG
CATTGTACTATGAATTCAGGCATGAAACTGTAGATTTGTTCATGTTTCAG
GTGAAAGATTTAAAGCAGTCCTTAGATCACCAAAGAAAAGAGCTTAACGA
CTACAGAGCTGAAACTACTTCACTCAAAATGCACATTGAAAGAACTCAAT
CTGGACAGTTTTTGGTCCAAAGTAATGTGGAGCAAGTTGAATCACTGTCG
TTAGAGAGCTACAAGGAACAGTTAGAAGCATTGCAAAAGGAAATAGAACA
GCTAAAAGCTGCAACATCCGTTCCTAATTTTGTAATACCTGTTAGTCATA
AAGATGAGAGGACGGAGGCCAATGACGATGTTGTCAAATTGCCTGAAAGA
GATGCCACAAAATCTTCAGATCAGGTTCTAGGCGGATCCTTAGAACGTGA
AGATAATCAATCTGTTTCACTTGATATGAGTCCTGGAATCTCTATTGCGC
CTAAAAAGGTTTCGGAAGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTA
AAATTTTTTTTGGGAAGAGCCGGCAATCAGTTCTTTATATGAAAGTTCGC
TCACTAAAGAAGTTAAAAATACCCCCAAATACAATGCTGGATCACCTCGT
GATGAAAATGGGTTGCTCTTAAAAACAGATAGTCTGGGTGAAGCTAATAT
TGAGAAGATGGTTTGTCTCTTCCACTCACTCCAAAACTGTTCCCCTTCCC
ATGTGTGAATATTTATGTATTTAATGACAACACTATTTTCTTTGAAACCA
GGGTCTTCTAACCATTCAAATATTGTCTGATGCATTACCTAAGATAGTTC
CTTATGTTCTCATCAACCATCGTGAGGTGTGTTTACTGAGTTATCTTGAT
TTTTGCTCCATGTCATTTTTGATGATATAATTACTTATTCAAAAGTCTGT
TTTCTTTTACCTGTAGGAGCTTCTTCCCCTTATAATGTGTGCAATTGAGC
GCCATCCAGATAGCAGTACACGGGATTCCTTGACACATACACTGTTTAAC
TTAATTAAACGTCCTGATGAGAAACAGAGACGAATCATTATGGATGTTAA
GTTTCTGATCATTACCTAGAATACATGGTTTTATTTTAATCTGTTAGTAT
ATCATTATAAAATACTAGAGTTTTATGCTGTGTCCAGGGCTGTGTTACTC
TTGCTAAGGACGTGGGAGAGATGAGAACAGAAACAGAATTGCTTCCCCAG
TGTTGGGAACAAGTGAGATCATGTTGATTAATTATGACACTCTTTTATAT
GACCAAAGATTGTATGCAATATTGGTTGATTCCTGTTATGCAGATTAATC
ATAAGTACGAGGAACGCAGGCTGCTTGTTGCTCAATCATGCGGAGAGCTT
GCAAGATTTGTGCGGCCAGAGATTCGTGATTCACTCATCTTGTCTATTGT
GCAGCAGCTGATAGAGGATTCTGCTACTGTTGTACGTGAAGCTGCTGCTC
GCAATCTCACCTTGTTGCTTCCACTCTTTCAAAACATGGTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGATTCTGCTACTGTTGTACGTGTAGCTGCTGCTCGCAATCTCAC
ATTGTTGCTTCCACTCTTTCCAACCATGGATAAATATTACAAGGTCAGCT
TCACTAATTATGCTTCGAGGCAATCATGGAGAAGATTATCTGACTAGACA
GGATTGCCTACAAATGTAAGCTACATGGTCTAGGAAATGGATCATATTCC
ATGATCATAATATGTTTGCTGAAAGGAAGAAAAAGATGAAACTAGTATTT
TAGAGATTTCTCCAGTTTTTCTTCTTTTGCTTGTCATAGGTGGAGGAGTT
GATGTTTCAGTTAGTTTGTGATCCATCTGGAGTGGTTGTAGAAACAACGA
TCAGAGAATTAGTGCCTGCTCTATTGAGCTGGGCTAACAGATTGGATAAC
ATGTTACGAGTATTAATGTCTAACATCTTGAGCTCCGCTCAGGTAAACAT
ATATCTGAAAACACTTCATTTTTCATACCAAATCTTGCCCCAGTACAATG
TCAATGATGCAATTTATTTTCAGCGGTGTCCACCTGTATCAGGGGTTGAA
GGTTCTCTTGAATCATATCTCCGTGTTTTGGGTGAACGGGAGCGTTGGAC
TGTTGATGTTTTATTGCGATTGCTGGCAGAATTGCTTCCAAATTTGCACC
AAAAATCAATTGAAACTTGCCCATTTCCTTCTGCTTCAGATGTTGCAGGA
ACACTGTTCTCTACTTCCTTGTTAGAATTGTATGCAGGGTAAGTCCCGTT
GAGTCTTCCCAAGTGGATGCTAGCTTTCTTGTTTAAAATGTGCAATTGTG
TCTCAGTTTCTTTTGAATTATGTGATGAGTAGGGGACACGTGGAATGGCC
TACTTTTGAGTTGCTACATTGTGATTGCTTTCCGACTTTGATACAATTAG
CCTCATTATTACCTCAGAAAGAGGATAAGTTACGAAGTCGAATTACAAAG
GTACACTCCCTTGTGTAATGGTTGATGTTTCTTAACATTTATTCTTGTAT
AGTGACGCTCTTGGTTGATGCAGTTATTGCTGACCGTGTCTAAGCTCTTT
GGGGATGATTATGTAACAAATATTATGCTACCAGTATTCCTGATAGCAGT
TGGTGATAAAGCTGATTTGACGTTCATACCTAACAGAATTCAAACAAGAA
TCAAAGGTTTTGAGTGCTCAGATTTCTGAATTGGTAATATTCTTGTCATG
CATGTCATGTTACTAAATATCTCAATTCTTGTGAACTGCAGGTTTAAGAC
CTAAAAGTTCGGTAGCTGAGAGACTGGCTACCATGTGTGTCCTACCTATA
CTTCTGGCTGGTGTATTAGGAAGTCCAAGTAAGCATGAAAATTTAACAGA
GTATTTGAGGAATTTGTTAGTCCAAAATGCCGTTCAGGAAAACCAGTCGG
TGAGGAGGAATGCAGAGATTGTTAATTCTGTCCGCTTCCTTTGGTGCGTA
CCCTATTGCCGAGATGAATATATGTATAGAGTTTGCACTTTGGTATTGAA
ACATATACATTCTAACTTTCCACTTTGATATACAGCTCTTTTGAAGAACA
TCATAACATGGTTTTTAATATCTTATGGGAAATGGTTGTAAGCTCCAACA
TATATATGAAAATTAGTGCTGCTAATCTTTGGAAAGCCATAGTAAGACTA
TCACTGAATCACAGTATTTATTTATCGTTTCATATACCTGGATACCTCTT
TACTCATGTTTGTTTTGTGTCGGCAGGTTCCATATATTGATGTAAAGGTT
GCATCAACTCATGTTTTGCCTGCTCTTGTAACTCTTGGTTCTGACCAAAA
CTTAAATGTCAAATATGCAAGCATTGAAGCATTTGGGGCTGTAGCACAGC
ATTTCAAAAATGACACGGTACTCCCTGCTCATGACAACTTTAAATTAATT
TTATTTCGGTTATAGAAGCTTCTTTACAATGGTCATGGCTTTCTTTTCTT
TGTAGATAATTGAAAAAATACGTGTTCAAATGGATGCTTTCCTTGAAGAT
GGATCACATGAAACTGCAATCGCCGTTGTGCGTGCATTGGTGGTTGCTGT
CCCGAATTCAACAGACAGATTTAGAGATTATATCCTTAAAATATCTCGTG
TACATTATCAGTGCTTGACGTAGCTCTGCTAACTCTTATTATTGGTGCCA
AACAATTTTTTACCCCAATTATGTTAACTGTTTCTTAACTAAATATACAT
CTGTTGTCCAAGATTTGCGTACTTTCAGCTGCACCAATTCCTTCAAGTGA
TGTGGTACGTCGGCGTGACAGAGCCAATGCATTTTGTGAATGTATTCGTG
CTGTAGATGCTACAGGTATGTTTATCAAGCCTGGACATGTGTTTTAAGTT
ATAATTGTTTAGTATTCCGAATGAGAATACAGCACCTCTGTATAAATTCC
ATTCTTCGAAAAGCCAAAACAGATGAATAAAGCTACCTTTCTGAATTCTG
ATAATACAATAGTACTGTATCAAGGCACACATGAAAAAAATGCAGACTCC
ATGGCCCTTTGCGTGTTACCATCGTATAAACTTATTGTGCTAGAAAAAGA
TGATTAATTTTTGAAGTCATCCTCAAACAATCTGATACATGTTTCTCATC
TGCTGATATTTCATATGGTGTTTGTGTCATCTCTGGTGCAGAGCTTCCTG
CCACAAGTGTTAGGGATTATTTGCTACCAACCATACAAAATCTGTTAAAG
GACTCGGATGCTCTTGATCCAGCACACAAAGAGGCGCTTGAAATTATTGT
AAGGGAAAGATCTGGGGGATCATTAGACACATTTAGCAAGGTGATGGGTG
CACATCTTGGGATCACCAGCTTATTCGGTGAAGGGGGCTTATTGGGGAAA
AAGGAAAGTGGGGATTTATCGGCAATGGCAGACCAGCTAACTGAGGCTTC
AAAGCCAATTCCAGCAGCTCCAGATCCAGCACAAACAGCGGACGACACAA
GATTTAGAAGAATAATGAGGGGTGGTTTTACAGACATTTTAAGGGGGAAA
ACAGAGCAATAAGGATGTTTTCCCCTGTGGTGGTTACTGGTTAGAGAGGA
ATGCTTAGGCTTTTTTCTTATTGCTATAGCTTTTCCTTGCTAGATTATTT
CAGATCCAAACAATTTTCAGAAATAAATGTCAATGTTGTTTAGTTTATAG
ATATAAAAACAGAGTAAAGTTATATGGAGACCATTTTTTTTGGAGA