DCAR_018815 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_018815

Identifier:

DCAR_018815.gene

Locus Tag:

DCAR_018815

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_018815, is a part of gene, DCAR_018815.
The genetic_marker, MK003680 K1124, is located in gene, DCAR_018815.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_018815	DCAR_018815.mRNA	mRNA	DCARv2_Chr5:33531624..33541987

Sequence:

ATGGACGGCCAGGATTCCATCTCCGACCAACCAATTGTCTCCCCACCAGC
ACCGCCGGCACAACCCGAACCCGAGTCCACCCAACCACCCGCCCCCGTAC
CCGAACCCGGCGAGAAGCGCAAACAACCCGAACCCGACTCCGCCCCGACC
CCACCACCGCCGGAAAAGTCAAAGCACCCGCTGTGGAAAACGAGTTTGTG
CTCGTACTTTCGTCGAACAGGTGGTGAGTGTAGCCACGGCGAGACGTGTC
GATATGCGCATAGCGAAGAGGAGCTGAGACAACGGCCGGATAACACGTGG
GACCCGACATCCGAGAGGGGGAAGAAGATGAAGGTTGAGAACGGGGAGAG
TGTAGAGGTCAAGAGAGGAACTGATGAGGTTTCGATTACCGAGGCGATTG
GAGAGGATTGCTGTTCTGACAATGTGTTGGAGAAGTGTTTAATTAATTTG
CCGATGAGGTGGAGTTCTGATAATTTACGCAGCTTCCTTACTGATAATGT
AAGTGAATATGTTTCTCCGTATTACTTTTGAATTAATGCATATAACAATA
TAGTATGTAGTGTATGTTTAATTTATAAGTTGTAGTCTGAGCATGACTTG
GATTTGTATATATTATTGTTCGTTAAATTTTTTGAATATTTCAAATTTAT
TAATATCTAAATTAATATGCTTAGAACTTTTTATTTTTTTATCAAAAAGT
TGTTCATAAGTATTGCTATGAGAGCATCTCCAAGAGATTAGCATTACGAT
TTCCTAAGTTATAATTTTTAGTAGTATGATGTAAAACATTACTTCAATAG
GATCCTAACCATTCTTTGAAACGTTAGGATACTCACTCCTTTTCTTATTT
TTAAGCAATGGCTAACCATTCCTCATTTTGATTTTAACAATGAAATGTTT
AGATTCCTCTTTATTCACACTCTTTTGCACCTTTTTCACATTATTTTCCT
TTCAAATTTAATATTATAATCATAGGGTCCATCAACAGGGATAGTTGATG
GAGTTATTATTCAATATAACGTTCTAACTTACTTAAAATTGAATACTTAT
TGTATATCTAGGAAACCTATGATGCTACAGGACTGTTTTATTTTGATGAA
TTACGTAATATATGGAGAGAAATGTGTGAATGCATTTGAAATCTTGACAT
GGAGAAAGAATTGATCCGGATAATAAAAAGAGTACCGGTAGTATATCTAC
ATTGATACGACTTCATCATAATGAACTACTTCTCATTCTAGGAGGCATAA
ACCTTACAACGATTACAAGATGTTTATATAATCAACTTTTAAATAATAAT
AAAAGACCAACTCATTAAGATGGGGTAAAATAGTAAAATACTTTGTAATC
TTCGACCATGACGACGACTGAACTAGTTCTAACGTTGGGGAAAAAATATC
TCACCTATATTAAACATAATTGTTTATAGCATGGCACCAATTTCTTCAGT
AGCTTCTTATTATGTGCTAGGTTGGAGTCAATTCTTTGATCTTTTGAATA
GTGACAAATTTGAGTAAGTCAACAATGATGGTAGGCTGGTGGCGATTACC
AGGAAGCGGAAAGAGGTGGTATATGAAGGGGCACGAGGGAGAGACTTGGG
TTATTTTTATGTATATGCTCATATTGAATTTTGATCAAGAGACAGTGAGT
CTAACCCATTACCAGATCCTAACCTGACATTAAATATGGATACATTCTTT
ATATGGGATTTCTATGAATTGCTACTAAAGACCATGAATTCTGTCTTTAT
GAATTAATATTTATGGCTATAATTAATATTTTTATCGGAGCATAACTTAG
AAAATGCTGGCTTTTTTTTTACAATTTCTACTTCTTTTCCAAACACCGTA
ATAACTTACAATAATTAATGTAATATGTTTATTGCATAGATTTAAATATA
TTTTTAAATAAATAAGTATATTTATTATGTAAGAAATATGTTATGTAAAA
ATATATTTACACACACACACATACATATATATAATGCCATATACATTGTT
GTCACGGCGCTCGACTAGTCGCGACTAGTCGACTAGTCGGGTAAAGAAAA
TCGACTGGAGAGGTCGACTTGCGAATTGTCGACTAGTCGGTCGACTTGGT
CGACTAGTCGGTCGACAAGTGCAAAATTCAATCAAAAATTAAAATGAAAA
AATAAATAATTATAAACTTGCTCAAAATCAACAATAATGAACATGTTAAT
TTAAGTTTATAGATCTTTGTGTATGTTTTATGTATGCATAAGTCAGTATG
TTAATGTGTGTACATGAAAGGGGAAAAAAAGACATGTTTGTAATTAGCAT
ATCTATTTTGTGATTGATATACATATGAGAATTGGAGTGGTATAATTTTG
TTGTAGGAAACCATTTATATAAGATATATATTAATATATATAATATTTAT
TTAATTAATATATAATATTTATTTAATTTATATTAACTTTTCGACTAGTC
TACGACTAGCCGACTAGTCGACAAGCTGGACCTATATCGACTTGACTCGA
CTTGTCGACGTGACAACCATGGCCATATACATGATACATCTTTAAATTTG
TACAAATTATTTGCAAATATAAATATTTAATATATATTCCATAAAATACT
ACATAAAAAAGTATTTTGAATAAATTTTATTAATATATTTATATTAAATG
AACACGAAAAGTACATGATACGTTTCGAAATGGATAAGGGGTTGAGATTA
GGTACATGAATCCTAAACGGGTCGGATATGGGTTTCACCTTCAAGTACAC
GAAACACGAAAGGACGACATGATATGATTGACAGGTCTTCATACATACTA
GTTGCCCAAGACTCTCCCTCAAGACCCAAGCTCCTATATTACATTGTTTA
TTTTACTCTCAGTACCACCTCTTCTCAATTAAGTAGTCCTTCCAGTGGCT
ACTCCAAATAGAACAACAGAACACCAGCCATTATCACCATCGTGCAGACT
TACTCAATTTCGATTCTTTCTAGAATTTAGATAAAATTGGTTCCAGTCTA
TTAGAAGTCAGGAGAATACAGACAAAATTTGGCGCCATAGGTGACAACAG
TTACGGGACTGAGATATTTGTTCACTTGGATTAGTAATGCGGAAGTGGAC
GGCGGAGGGAGGACAAAGAGATGATGGAGTATGGCACTAGAGCATTTTCC
CAAATTCAACTATCTTTGTCGTATCCTTTTTTTGTAGTTGACTGCTAAGA
TTCTCTGTTGATTTAATCAGTTAATTTGTAGCCCAAGCAAGCAGTGGAAA
ATGTGGGAAATATATTACGTAAATTAGACGGGGGCCCTAAAATAACTAAA
AGGAGTATTTCATTACTACTTTTCAAATTCAAGTTGTGAGTCAGTTTGAA
CTCCTTTTCTTACGGTGTTTTCAGACTTAAAGATGCATGCGGTTTGTGAT
GCTCTGTTTAGGTTATCACATTGTTCTAACTATTTTATGATAGTAAAAGA
GGGCATAGTAAGCACTTTACGAGGGAATAATTTTGAAGGCCATGAAGGAA
GAAATAATCTGTCTAAAATATATATTCTCGTTTAGTTCCATACTCTTGTA
ATTAGTGTAATAATAAAAGAAAAAAGAAGTGCATATTTACATATATGCAC
CCTATATGAAGAAGACTTTTTCTTTAAATATATGGATCAATGTCTGCCTT
TGAGACATATGGCCCTTCAAACTTGTGATGTTATCATGAAAGTCAAAACA
GGAACTGGAACCAAGTACAATTGAACTTTTTCAATTCTCGTCAGTTCTTA
GTAGTTCAGGGGATCATGTATGAAAGATGTACTTTTTCTCATAGTTACCG
TCCTGTTATGCAAGGAGATAATACTAATCCTACTGGCCATGTCATATTTA
ATTATAATAATAGGCTGTTGAAGGCCATACCACATATAAGAAAGTAACAC
AGATTTGATGTGATGCATTTATCACAATAGAGTAAAACAATATTATTTGG
CTGTTGGCCCAGTGCATTTTTGAGTCTTCCGCAAAGAACTTTAAATTATT
TTTCCAATGATTTAGGTTGTGCAATCTACGAAATAGATACTTTCTAAGAA
TGATATCAGCTCAATCATTTGTCTAAATGAAGGATTAACTTTCTGGACTT
GCTAAATAGCGGCAGTCATTGTGGTATACCCTGATACATAAAGTTTTGAG
TATATATTTCCTTTACGGTACATCTGATTGGCTACTTTAGTCATTTCTCT
AAATGTAATATTTGCTGTAGTTTGTCGAATCTTATATCCAGACATTCAGT
AGCTGTAAGCTATTACAGAGACTCAGGTTCTATTAGACTAATAAAATTTG
ATATATATCAGGGAGTTCACTTTAAATCAGCCAAGAAGAGGAAGGGCATG
CTTGTTGGATTTGTGAGTTTTGAGACCGCTGAACAAGTGAAAAGTGCAGT
TGAGGTATAACTAATGGCGTGTTAATAACATCTCTAGCGTACTTGTAGTA
GCTTTTTTTTTTCTCATTTATATTGTTACAGGAGTTGAATGGCAAATCCA
TTGGGAACAAGGATCTGAAGATTGTAGATGCCACCCCGAGGGCCTATGAG
AAAAGGAAAGCAGGGGAAATTTCTCTCCCACAGAGTACTCAAAATACTTC
TGAAAACTCGGACGCCCCCAAATCTTCTATTGGTGTTGATAACACTGACT
CTAATGATGACAATATGACTGTGGAGAGTACAGTCTCGAAGAGTAGAAGT
GCACGTGACTCAGTGACACCACTTGCTCACATGTCCTATGTTGATCAGCT
GGAGCACAAGAAGAGTTCTTTAACTCAAATGCTTAAGAAACTAGTTATGA
TTCTTCTTTTAAGTTTTTCAATTCATTTAGGAACTCAGATTTTTTTTTTT
TGATATGTTATATGTGTAGTTTGAAAGTTATTTGCCTCCTGTTTATCATG
AGCTGACATGAAACCCCCCACCTGTTGTCCATGTGCAGACTCGAAATGCA
CGTAAAGCATGTCCAAATGGCGTTTCACTTCCAGAATGGATTCTTAATTC
TAGGGAAATCGGTCAGCTCTTACTAGTCTGAGAAACTGAGATGTTTTTTT
TGTTTTATTTTGACAATCAATCTGTTATATGTGTGTGTGTTATGAGTTTG
TTGGGAGGCAATTATGCTTGAACAATTTGATAGCGGGACTGTATGTTAGA
ATTCACGTTACTGAAACATATTTCTTGTTCACACAAATATACCATCATAA
ACATACTTCATACAGGAATGTAATTAATGATATGAACCAACCTGGCAAAT
AGTAATGTTGTTGGTCTTTATTAATTTTGTAGGTGGCCTTGCATGCAAGC
TTGAAGGTATAGTTGAATCACCACTTGTTAGTGGTTACCGAAACAAGTGT
GAATTCTCTGTTGGCTATTCTTTACAGGCTAAAGTTACTGTTGGATTTTC
GCTTGGAAATTTCAGGTATTTGGAATAAGTTCAAGCTTTTTCAATTTTAA
TTATGTTATTTTGGTAAGAGTCTTAAAATTCTTCTAGGGAGGGTGTGATA
GCAGTTGAAGAACCTCTGAATTGTCCAAATGTTTCAAAAATTGCCTGTAA
ATATGCCGCCATATTTCAAGAATTTCTGCAGCATTCGGAGTTACCAATCT
GGAACAGATTAAATAACACTGGATTTTGGCGTCAGCTCACTGTAAGTTTT
CAAACTACTAGTATGATGGTCAAATTATTGTTATCATTCGGTACAGAATC
ACTTAAGTCAAAACTAAGGTCGAAGTCATTGATAGTTGTCATGGCATTGG
CAACGCCTGAGCGGAATTGTGATCAGTTGTATTGATCTTAGTTGGGTAGT
CAACTCCTATTGGATTGTAGGTGCCGCCTACGTGTTCAGCTACATCTTGA
TTATGTTCTTAATATATAATTTGAATGTGCTTTAGTTGTTTACAATATTG
TTAGTTTTAATTATTAGAACAATCAAGATTAATATAATTAACATTTAAAA
ATCAAATGAAAAAATAAAAAAAAATAATCAAATAATTTATACATATGAAC
ATATGCCCAAAAAAGTTTGAACGTGAATGGCCATCCAGGCGAGCGCCTTC
CACCGCGCCCCGGTTCACCCTTGGATTCCTTAGTTCTGTCATACAGCGCC
AAATGTCTTAATGAACTTGCCTGTCTGTTCTATAACATTACTTATTAGGT
CCGAGAAGGCAGGAAGCCTGGGCAGAGCACTGAAGTTGAAGATTCTGAAG
CCCATATTGCGGAAGTCTTGCTCATGGTTCAGGTTTTTTTTTATTAAGTG
GATTTAGTAAATGTTTATCCTCCATCTAAATTTTATTACACTGGCATTAC
GAACTTTACTTTGTGCTGTAGAAGCAAAAATTATAGTAGTTCGTATTCCC
AGGGAGGTCTTGATGTTCATATATATATATATATATATATATATATATAT
ATATATATANCTTGTATAGTTCTGTTCAGATCTGTTTTCTTGTCTTGTGT
GTGAGTTTTCAGGTTTCCACAGCAGGATTTGATGATGGAATGGTAAATGG
TGAATTCGAGAAGATGACTAATGCATTTGCTACAGGAGCTTCAGCGAATA
CTCCTCCATTGCCTCTAACTGCTTTGTTAATTCAGGTACTTATTAACTAC
TAGTCATGTATCAGTGTTTACCTACTTACAAGTAGTTTGAGGTGCCTGGG
TTTGTTGCTCGTCTTAGTGGGCTTGACTAATAAATGAACATAGATAATAA
AATGAATATAGGTGAATTTGTAATTTCCAATTCCATAAATTTACACTGGA
CTTGTGCTTCATCTACTTGCTTGACATGGATGATGAAATAGGAGTCACTG
AGGGACTCCAGTCTGATATATGGTCAATGATTCGTTACACAGTGCAGATT
GTTTAGTAGTAACGGGGGTATAAAGTTAAAAGCACACAGCTCCTCATATA
TATTAGTGGTAGGCAAATGCGAATGACTCAATTATATTTTTGTAATTTTA
TTTGATAAAAGGTAATACTGTTACTCCCATGTACAACTCAAAAAAAATTT
AAAAACTATTTTTAATAAGTCATTAATTACACATAACAATAAAATTATCC
GAGACTTGAGACTAAAATTCCACTTTTGACATTATGTTCCTTGAAGTCAA
AAGTAAATTTATTAAGTTCCTCAAACAGACCATAATTGTTCTATTTGGTG
TTCTGTTGTCGTACAGGATCATACCGGAATATCAAACGTAGCTCCAGCGG
ATGCGCCATTGCGCTCTTTAACTATTCCAAATGAAAAGAGTGAAACTAGA
CAAGACGATGTGAAAGATGTTGTGGAAGCAAGGATTCATGATTATATTAG
CAATCTTCAGTTTTGTATATCTGCAACAGCTTTTTTCCAGGTTCTTTTCC
TTGTTTCTAAAATCTAGATGTCTTGATTTTTTAAATACATAAAAAATCTT
AAGAAGTTCGAATGTCATAGGTGAACACCCTTGCGGCAGAGAAGCTCTAT
TCTCTTGCTGGGGATTGGGCTGGTCTGGGTCCTGATACCTTGCTCTTTGA
TATCTGCTGTGGCACGGGTACCATTGGCCTAACATTAGCTCATCGTGTTG
GTATGGTAATGTTTTTAATGAACTTTTGCAAAATTTCTTCTTTTCATTCA
GGATTAATTTCAATTTCAGATGATTGCAAAGAACTTGAGGCTTTGTAAAT
AAAATGGGCATTTGCTGAGGGTTCTTAGTCAGGGCTATAATTATGTTTAT
TAACGTGATTGCAAATTGAGATTAATATGATGGGAATAAGAGATTAGGAT
GACTGGAAAAAGTGATTGTGAAATACTCGGTTTAAAGGTTTCACCCTGTA
TATGTCAGTTATGATCAATTCTTTTTTTGTCTCGCTGGTATTTGGTTTCT
GTATTCCCAATTACAAAAATACTTCTTTTGCATATAAGGACAATAAAATG
ATTAATATCAACAATTTAACACCACAAGTCTCACTATCGATTTTACATCC
CGTTTTCTGTTATTATCATTTTTGGCTTTCCACAGATGATAATGCTGTTC
TAAACTTTGGCATCTTGTTAGGTTGTGGGGATTGAGATGAATGCCTCAGC
TGTTTCAGATGCTATTCGCAATGCTGAGATTAATGGGATAAAGAACTGCA
GATTTGTCTGTTCGAAGGTGTGATAACTGGCTGTCATATATTGCTAAAGT
GCCTAAATTGTGTTTGGACATATTTTTGCTGGGAAAAAATGCCTTCAGAA
TCATTTGTACCTTCTATATAATATAGAGTGATTTCTGTGGGGAAAACCGG
GGAATCGTGATCTGATTTCCAGAGTGTTAGCTTCCAATCAATATAAAAGT
AAGAAGAGCCTAAAATTTTCCTCCATACTGTTACCACCGATATCCCCATT
CCAGTAATAATGTTGAAAATTCAATAATCTCTTTCATATTTGATGAGAAT
TTTGTAGGAGAGAAGGAACTCTTTTGATAATATTATTTTAAATTACAGTG
CCTCTCATAAGAACTTTTCTATCCATTTTGTAACAGATTTGGTAATATTA
TATTATTATGATGATTAATGTATTTTGTTTTTAGTTTGTTAAATTGTATG
TGTATCTGTTCTTGAAATATTTTTTTCCTGATTTGCCTGTTTAAATTAAT
CAAAGCAATTCATGAGTGACAGGCAGAAGACGCGCTGGGGTCTCTTTTGA
AAGAGTATTTAAAAATGCATCAGAAACCCGTCGATGTTCCACAAATTGAT
GATGTTACAGTTCATGGGGAAGTTACTCATACTGAGAATGCAACAGACAC
AAAAGAGAACTTGATCATTGAGCTAGAAAATTGTGATGGTGCCCCCAAGT
GTGACACAAATGGAGGCCAGAAAAGTGATTCACAACAGAGTTGCAGTTCA
GCAACTGCTAAACCTGTGCAGTATTTTAAGAATGTTGTTGCTATTGTTGA
TCCTCCGCGTGTTGGACTTCATCCTACCGTAAGTAGCAACCTCAAATTTA
TGTAGCCACATTCTAGATAAATTCTACTGCTAAAGTTGAAGATCCACCAG
AACAGTGGTTATTAAGATTCTTAGAAAATATACTTAGGGCACAATTATAA
TTTTGGGACCAGATGTGTTGCTGTTGGGCCTCCCTCATATTTAAATTGTC
TTTGTTACCAAAGATATATCCTGAACACTATTTGTAAATGTAGGTCCATA
AGCATCTGAAAAAAATAATTTGTCACTGTCCCATGGAATTTTGTTTGAGG
TTAGAGTTCTTTCTCTTGGGCGCGCTTGAGATAGGTAGATATTTGAGGGA
TGACCATAATTGAGATAGCATACTGTAATGATTCCGAATTAGGTTGGTTG
AATATAACATGTCTGTGGATTTATCCATAGTTATTGAACTTCATGTTCAT
AATAACTATGTGCTTCTTTCTTTTAGATATATCTGGTTTCATTCAAAAAA
TTTTGGAGGACTTCTTTCAAGTCAATCACTACAATGAATTTGTTGCAGTT
AGTTATTGAACTTTGTTTTTGCAGGTGATTAAAGCTTTGAGAACTCATCC
ACATTTACGGAGGCTTGTGTAAGTTTTGACCTTGAATAAGTTGTGTTCTT
GCTTTTTTATTTGATTAAATATCAATTATCTGAATATTAGCTTTTCGAAA
TGGGAGATGAATGTGACTCTGTTGCATTATTTTATGATTTATGTATATAA
AAAAAAGGAATTTCACTAGTTTGGTTTTAAAAAATTTTTGGTTTTTTTTA
CAAGTGTCGACTCGCATAATATGCGCTAATCTTAGAACTCTTTGCTATAT
CTGTAATTCTGTATTACATCGGTTAAAGAAAGGAAAGACTGAAAGAGATA
GCCAAAGGCCTTTCACAAAACTTACTATGGATTCATGATCAGAAGTTATT
GGCCTATTACTATGGAAGTTGTATATATAGACAGTGAGTTTTGAACGCAG
TCTCACGAGCAAACAATCTCCATAAAAATTCCCCAAAAAATGCTGTTAGT
AATGACAATGTAGATTCTTACTATGATGAACACATCAAGACTCTCTTTTC
AAGATAACCTACTTGATATATTTAGCTTCTTCTAATCAGTTGCTGTCTCT
AAGCCCTTCTATGTTCCACTTGTATTATTTCTCTCTAACCTAAACCTTCA
TATAATATTTTTGCAGATACATATCTTGCAATCCTGAAAGTTTAGTGGCC
AATGCTATTGAGCTATGCACACCATCTTTTGATAAAACTGAAAAGGGGAA
TAAAAATAATAGAGGTTGGAGAAATATGAGCAGTGCTGGTTTGGCACGCC
ATCGTGCCAAATCTATGCCCAATTCAGAGCCTTTCCAGCCAATAAAAGCA
ATGGCGGTTGATCTTTTCCCTCATACTCCGCATTGTGAGCTGGTTATGCT
TTTGGAGAGGTAA

Sequence Length:

10363

Sequence Checksum:

ae5d9fe56f06ef60d3e8e7ba40628e77

View location in JBrowse:

DCARv2_Chr5:33531625..33541987-

Cds:

>DCAR_018815cds ATGGACGGCCAGGATTCCATCTCCGACCAACCAATTGTCTCCCCACCAGC ACCGCCGGCACAACCCGAACCCGAGTCCACCCAACCACCCGCCCCCGTAC CCGAACCCGGCGAGAAGCGCAAACAACCCGAACCCGACTCCGCCCCGACC CCACCACCGCCGGAAAAGTCAAAGCACCCGCTGTGGAAAACGAGTTTGTG CTCGTACTTTCGTCGAACAGGTGGTGAGTGTAGCCACGGCGAGACGTGTC GATATGCGCATAGCGAAGAGGAGCTGAGACAACGGCCGGATAACACGTGG GACCCGACATCCGAGAGGGGGAAGAAGATGAAGGTTGAGAACGGGGAGAG TGTAGAGGTCAAGAGAGGAACTGATGAGGTTTCGATTACCGAGGCGATTG GAGAGGATTGCTGTTCTGACAATGTGTTGGAGAAGTGTTTAATTAATTTG CCGATGAGGTGGAGTTCTGATAATTTACGCAGCTTCCTTACTGATAATGG AGTTCACTTTAAATCAGCCAAGAAGAGGAAGGGCATGCTTGTTGGATTTG TGAGTTTTGAGACCGCTGAACAAGTGAAAAGTGCAGTTGAGGAGTTGAAT GGCAAATCCATTGGGAACAAGGATCTGAAGATTGTAGATGCCACCCCGAG GGCCTATGAGAAAAGGAAAGCAGGGGAAATTTCTCTCCCACAGAGTACTC AAAATACTTCTGAAAACTCGGACGCCCCCAAATCTTCTATTGGTGTTGAT AACACTGACTCTAATGATGACAATATGACTGTGGAGAGTACAGTCTCGAA GAGTAGAAGTGCACGTGACTCAGTGACACCACTTGCTCACATGTCCTATG TTGATCAGCTGGAGCACAAGAAGAGTTCTTTAACTCAAATGCTTAAGAAA CTAACTCGAAATGCACGTAAAGCATGTCCAAATGGCGTTTCACTTCCAGA ATGGATTCTTAATTCTAGGGAAATCGGTGGCCTTGCATGCAAGCTTGAAG GTATAGTTGAATCACCACTTGTTAGTGGTTACCGAAACAAGTGTGAATTC TCTGTTGGCTATTCTTTACAGGCTAAAGTTACTGTTGGATTTTCGCTTGG AAATTTCAGGGAGGGTGTGATAGCAGTTGAAGAACCTCTGAATTGTCCAA ATGTTTCAAAAATTGCCTGTAAATATGCCGCCATATTTCAAGAATTTCTG CAGCATTCGGAGTTACCAATCTGGAACAGATTAAATAACACTGGATTTTG GCGTCAGCTCACTGTCCGAGAAGGCAGGAAGCCTGGGCAGAGCACTGAAG TTGAAGATTCTGAAGCCCATATTGCGGAAGTCTTGCTCATGGTTCAGGTT TCCACAGCAGGATTTGATGATGGAATGGTAAATGGTGAATTCGAGAAGAT GACTAATGCATTTGCTACAGGAGCTTCAGCGAATACTCCTCCATTGCCTC TAACTGCTTTGTTAATTCAGGATCATACCGGAATATCAAACGTAGCTCCA GCGGATGCGCCATTGCGCTCTTTAACTATTCCAAATGAAAAGAGTGAAAC TAGACAAGACGATGTGAAAGATGTTGTGGAAGCAAGGATTCATGATTATA TTAGCAATCTTCAGTTTTGTATATCTGCAACAGCTTTTTTCCAGGTGAAC ACCCTTGCGGCAGAGAAGCTCTATTCTCTTGCTGGGGATTGGGCTGGTCT GGGTCCTGATACCTTGCTCTTTGATATCTGCTGTGGCACGGGTACCATTG GCCTAACATTAGCTCATCGTGTTGGTATGGTTGTGGGGATTGAGATGAAT GCCTCAGCTGTTTCAGATGCTATTCGCAATGCTGAGATTAATGGGATAAA GAACTGCAGATTTGTCTGTTCGAAGGCAGAAGACGCGCTGGGGTCTCTTT TGAAAGAGTATTTAAAAATGCATCAGAAACCCGTCGATGTTCCACAAATT GATGATGTTACAGTTCATGGGGAAGTTACTCATACTGAGAATGCAACAGA CACAAAAGAGAACTTGATCATTGAGCTAGAAAATTGTGATGGTGCCCCCA AGTGTGACACAAATGGAGGCCAGAAAAGTGATTCACAACAGAGTTGCAGT TCAGCAACTGCTAAACCTGTGCAGTATTTTAAGAATGTTGTTGCTATTGT TGATCCTCCGCGTGTTGGACTTCATCCTACCGTGATTAAAGCTTTGAGAA CTCATCCACATTTACGGAGGCTTGTATACATATCTTGCAATCCTGAAAGT TTAGTGGCCAATGCTATTGAGCTATGCACACCATCTTTTGATAAAACTGA AAAGGGGAATAAAAATAATAGAGGTTGGAGAAATATGAGCAGTGCTGGTT TGGCACGCCATCGTGCCAAATCTATGCCCAATTCAGAGCCTTTCCAGCCA ATAAAAGCAATGGCGGTTGATCTTTTCCCTCATACTCCGCATTGTGAGCT GGTTATGCTTTTGGAGAGGTAA

Pep:

>DCAR_018815pep MDGQDSISDQPIVSPPAPPAQPEPESTQPPAPVPEPGEKRKQPEPDSAPT PPPPEKSKHPLWKTSLCSYFRRTGGECSHGETCRYAHSEEELRQRPDNTW DPTSERGKKMKVENGESVEVKRGTDEVSITEAIGEDCCSDNVLEKCLINL PMRWSSDNLRSFLTDNGVHFKSAKKRKGMLVGFVSFETAEQVKSAVEELN GKSIGNKDLKIVDATPRAYEKRKAGEISLPQSTQNTSENSDAPKSSIGVD NTDSNDDNMTVESTVSKSRSARDSVTPLAHMSYVDQLEHKKSSLTQMLKK LTRNARKACPNGVSLPEWILNSREIGGLACKLEGIVESPLVSGYRNKCEF SVGYSLQAKVTVGFSLGNFREGVIAVEEPLNCPNVSKIACKYAAIFQEFL QHSELPIWNRLNNTGFWRQLTVREGRKPGQSTEVEDSEAHIAEVLLMVQV STAGFDDGMVNGEFEKMTNAFATGASANTPPLPLTALLIQDHTGISNVAP ADAPLRSLTIPNEKSETRQDDVKDVVEARIHDYISNLQFCISATAFFQVN TLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMN ASAVSDAIRNAEINGIKNCRFVCSKAEDALGSLLKEYLKMHQKPVDVPQI DDVTVHGEVTHTENATDTKENLIIELENCDGAPKCDTNGGQKSDSQQSCS SATAKPVQYFKNVVAIVDPPRVGLHPTVIKALRTHPHLRRLVYISCNPES LVANAIELCTPSFDKTEKGNKNNRGWRNMSSAGLARHRAKSMPNSEPFQP IKAMAVDLFPHTPHCELVMLLER*