DCAR_018847 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_018847

Identifier:

DCAR_018847.gene

Locus Tag:

DCAR_018847

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_018847, is a part of gene, DCAR_018847.
The genetic_marker, MK004091 K1535, is adjacent to gene, DCAR_018847.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_018847	DCAR_018847.mRNA	mRNA	DCARv2_Chr5:33784099..33799523

Sequence:

ATGAGCAACGAGGGAGAAAAGACTTGCCCTCTCTGTGCTGAAGAGATGGA
TTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGTTATGAGGTCAGAA
ATCTTATTTACATGTCTCTTTGTTAAAATTTTGCAGCAAAATACTTAGTC
TGATTAGCTTTTGGTAGGATAATATTCATTTTTATTTGATTCTGTACTCT
TATGGAGAGTAATTATAATATGCTAAATCAGTGTCAGATATTATGGCTGA
TGTTTTTGCATTATGTGGAAATGTTTTTCCATTTTAAAATTTTTATTATA
TTGAAAGCTCTTGAAATTGTTTTTATCTATATTATTTGCCAACTGCCATC
GGATTTTGAATTAATAAAACATCTCTACCCAGCATCAAGTTATTTTAATC
TATAATTTTTTAGGTCATTGGGAATCTGTCTTTGTGAAACAGACAAAAAG
CAGCAGGGATTGTTGCTAAGTTGTACATTTTTGTTTGGTTTATTGGGGAA
CATTGTGCATTTCTTCAAGTTTCTGCGGAGGACATATATTGAAATTAGTG
TTAAGTGTTTATGTTTCAATATATATTTGTGTTGCATACTCACAGTGGAA
ACACTTGTTAGGGTTAGTAAAGAATCTAATGGGACATTGCTCTAAATACA
GTTTATCAAAATTTTAGCTAAGTGGCTGATTTGTGACAGTGATACAACTT
CCATAATTCTTTTTTTTTATTATTACCCATATCAGATGTCATAGGCTGAT
TGTTGAAAGCACTAAAATGATATTAAAAAAACGTCTAACAGAAGTAATGG
AAAGTTTAAAGTACAATCGGTAGATATGCTACAATTAAGCTTTTTGCATA
GATTAAACCAGCAGTAGTGACCGTGAAATTTATACTCTTTGGTGTGAGTT
TTCATGGATGTTGACTCTCAAACCCAATAGCGTGTTTGCTTCTCCTGTAG
ATTTGTGTTTGGTGCTGGCATCACATAATAAACATGGCTGAGAAAGACAA
TGTAGAAGGCAGGTGTCCAGCATGTCGCACCCCTTATAACAAGGAAAAAA
TTGTGGAAAAGGCAGCTCAATGTGAAAGGTTTTCATCTATGCATAGCTTA
TGTTGACGTCTGCAGATATTTTATTGACATAGTTATGATGACACAGAATA
TTTCTCGTTGATAGGTTGTTGTCTGAGTTGAATGTGGAGAAGAAAGGGAA
GTCAAAGTCGAAAAGTAAAGCACCTGATGGTAGAAAGAACCTAAGTAGTG
TTCGAGTGATTCAACGAAATCTTGTCTACATTGTGGGGTTACCTCTTACT
TTGGCAGATGAAGACGTGTGTATATCTCCTCTTTTTCTTGCTTCTTTTTG
TCTATACTTTTCCGCTCGTTTTTTTATCACCTGTATATATATTGTTTTAT
GCAGCTCCTACAAGGAGCGGAATACTTTGCTCAATATGGGAAGGTGCTTA
AAGTGTCAATCTCTCGTACGGCAGCTGGGACCATTCAACAATTTCCAAAT
AGCACTTGTAGTGTGTAAGTGTTTCTTTTNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAACTCGGA
AGTTGTCAATTTTGTTGCTTTTTCTAATCATTTTTAGGGTTTCTAGAGTT
TAATATCTGATTATGAAACTGTGTTGAGTATCTGCAATTTTTAATGTATA
GGCAATCATGAGCAACGAGGGAGAAAAGACTTGCCCTCTCTGTGCTGAAG
AGATGGATTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGTTATGAG
GTCAGAAATCTTATTTACATGTCTCTTTGTTAAAATTTTGCAGCAAAATA
CTTAGTCTGATTAGCTTTTGGTAGGATAATATTCATTTTTATTTGATTCT
GTACTCTTATGGAGAGTAATTATAATATGCTAAATCAGTGTCAGATATTA
TGGCTGATGTTTTTGCATTATGTGGAAATGTTTTTCCATTTTAAAATTTT
TATTATATTGAAAGCTCTTGAAATTGTTTTTATCTATATTATTTGCCAAC
TGCCATCGGATTTTGAATTAATAAAACATCTCTACCCAGCATCAAGTTAT
TTTAATCTATAATTTTTTAGGTCATTGGGAATCTGTCTTTGTGAAACAGA
CAAAAAGCAGCAGGGATTGTTGCTAAGTTGTACATTTTTGTTTGGTTTAT
TGGGGAACATTGTGCATTTCTTCAAGTTTCTGCGGAGGACATATATTGAA
ATTAGTGTTAAGTGTTTATGTTTCAATATATATTTGTGTTGCATACTCAC
AGTGGAAACACTTGTTAGGGTTAGTAAAGAATCTAATGGGACATTGCTCT
AAATACAGTTTATCAAAATTTTAGCTAAGTGGCTGATTTGTGACAGTGAT
ACAACTTCCATAATTCTTTTTTTTTATTATTACCCATATCAGATGTCATA
GGCTGATTGTTGAAAGCACTAAAATGATATTAAAAAAACGTCTAACAGAA
GTAATGGAAAGTTTAAAGTACAATCGGTAGATATGCTACAATTAAGCTTT
TTGCATAGATTAAACCAGCAGTAGTGACCGTGAAATTTATACTCTTTGGT
GTGAGTTTTCATGGATGTTGACTCTCAAACCCAATAGCGTGTTTGCTTCT
CCTGTAGATTTGTGTTTGGTGCTGGCATCACATAATAAACATGGCTGAGA
AAGACAATGTAGAAGGCAGGTGTCCAGCATGTCGCACCCCTTATAACAAG
GAAAAAATTGTGGAAAAGGCAGCTCAATGTGAAAGGTTTTCATCTATGCA
TAGCTTATGTTGACGTCTGCAGATATTTTATTGACATAGTTATGATGACA
CAGAATATTTCTCGTTGATAGGTTGTTGTCTGAGTTGAATGTGGAGAAGA
AAGGGAAGTCAAAGTCGAAAAGTAAAGCACCTGATGGTAGAAAGAACCTA
AGTAGTGTTCGAGTGATTCAACGAAATCTTGTCTACATTGTGGGGTTACC
TCTTACTTTGGCAGATGAAGACGTGTGTATATCTCCTCTTTTTCTTGCTT
CTTTTTGTCTATACTTTTCCGCTCGTTTTTTTATCACCTGTATATATATT
GTTTTATGCAGCTCCTACAAGGAGCGGAATACTTTGCTCAATATGGGAAG
GTGCTTAAAGTGTCAATCTCTCGTACGGCAGCTGGGACCATTCAACAATT
TCCAAATAGCACTTGTAGTGTGTAAGTGTTTCTTTTTCTGATTGAAATGA
CTTTAAGATTGCAAGCATAATTAGGCCTACATATAGAAATATTTTTTTGT
ATAATTGTGTGTCTAATAGATTGCCTGAATATTAAGTCGGATTCCTTATT
CTTGTAAAAATTTGAAGCCAAGCAGCAGGTTTTCAGGTCTTAATTTGGGC
AATGACCATCTTGAATATGTGCGTTTAGGTTCTTATAATTGTCTGATGTT
AATAAAGTTATTAAAAGTCATATATGAGATGTATATTAACTCTTAGATTA
TCAACCTTTGTTTTTACAGATATATTACTTATTCAAAGGAGGAAGAAGCA
GTTCGTTGCATTCAGTCAGTGCATGGTTACACATTGGAGGGTAGACCATT
AAGGTCTGATTCTGTTGGCTTTTGTGGATTGCAGCAGTAATTGTTATCTG
TTTGCTTATTTACTATTCTTGTGTTGCAGGGCCTGCTTTGGAACCACAAA
ATATTGCCATGCATGGCTGAGGAGTGTGGTATGGTCCCCAATTTAATTAA
TACTTAAATTTGACATTTTGAGTTTGTGATTTTGTGCTGTTCTGATCATC
AAACTTTGGTCCAGCCATGCATCAATCCTGATTGTCTATACTTGCATGAA
ATTGGTACACAAGAAGATAGTTTCACTAAAGATGAAATAATATCAGCATA
CACAAGGTATTGTATAATTGTCATGTGCATTCAATGTATTGTTTTATCAA
TCATATCTTTTGGAAGAAATCAATCTCCATCTAGCCAATATGCAAATTTG
ATTGCTTTTCTGAATGATTGTATACTTACAATAATAAATTAGTATCTGCA
CTTCCTCCATCAGACGTGAGCAAACTATAAATTCAGCATTCGGTATAATA
TAGAGGCGCTCAAACAGCTTTGATAATTTGTTTTTATCATCACAAATACA
AGATAATACATTCTATAAATTGTCTTTTTGCAGCTAATGTATACATGTTT
ATAGAGTTGAAATATTGGATATGTGGTTGACAAAACTTAGATTGCTTGAA
AATTGTTTTTATCAGTTATGCTTTTCTGTGCTGGATTAGTGGGAACCCTC
TGTTTTGATATGTATACTGACTTCAAAGCATAATACTTTGCCATTGCATA
ATATAGTAGTGCAACGTAAACAATATCTACTGTCAAATGGTTACATTCAA
CAATATAGTGGTGTTACTTGCACAATATGACAATTGAATGATAACTTCTA
ATGCTTAAATGTTTATAAATGAATGAAGACCTGAAATTACCACAAAGTTT
GACTTAGAAATTGCCTATTACTTCAGCAAGGGTGTTTGGTTTAATTTTGA
AGTTTTTATTTGGTTTTTTCCCATATTACACTTTCACTCGGTACATATTT
GTGGCATGTTTTATTGAGTAGGCTTGCCTGATCGATCATCATTTGATACA
ATCAACTATCTATTTTCTGCCTAATTAACTTGCAATGTTATTTTGAAGAA
ATAGAGTTGAACTGAGTGTGGGTGCCACAATCGACACGCAACGTCGATCT
GGGAGTGTATTACCACCACCAGCAGACGACTTCTGTAATGACAGCTGCTC
CTCATCTGGAATACATCATAATAAAAGCTCAACGGATGTATGTTTTTGAG
TACAAATTATTTGTATTTGGGTCTTCTTCCTTTTAACATAAATCAGTGGA
TTGCTCAATCTCGTGTGTTTTTAAGCGTTGGTGTACAAGTATGCTATAGA
GTAGCAATTCTAAAGGATACTGAATTACATACGTAATTTTTCAAATAATA
TAATTAGTAATCGAGGTTTAACTCTATTAGCCACCAACTGATATATATAG
ACTGTGACCACGACACGTCTTTTTTTATTTTTGATATGGTGCAGAACCTT
GACATCTCTTCTCAAAACATATTGGAGTCATCTGTCTGGCAAACTCCGGC
AAGCAGTGTGAGGGGCTCTCCACCAAATAGTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTATTATAGAATTTAATATATACAAGTTTAAAT
TCTTCTCAGGGGAGCGCGTGCTTCAAATAGTCAACCATCACCAACAAGCA
TGGCAAGCTCAAATGGACCTTCTAAGCAGAAATCTGATACAGGTGGCATT
TCAGTCGCATTTTCAACTGCAGTAGTGAGCCCAGCCAAAGTCTCCTTAAT
GCACAATACTTCAGGAAAGAAACTTAATGGAGAAGGTTGGTTTCCCTTAC
AGAGGAATAAATCTGTTCCAGTAGCATCTGTGGGAATACAGGATGTAGAT
AAGCAACAAAAGTCATCGAATACTTCCACCAAGATTGGACATTTTGATAA
ACTAGTGACAAGTGACCAGATATCTACGCCATCGCCAAAAGTAGATGGGT
CCACAAGCATGCCAGATATCACAGTGCAGTCTTGCGGTATTAATTCAGAA
AGAAATTCACATCTACCTGTAGAGAGTAAATTTAAGGAATTATGTTCTGA
TATGTTGTCTTTAAATATAATTACTCATGGGCCACAGCACGTAGACACAA
AATACAGAGAACTCTTGTCAACAGATGCTGCAGCAAAGGATGCATCCTCC
AGTAAGGATCCTGTTGCAGCAAGGGATCTGTCTGAATTTAAATTAGTGTC
GCCGTCGCAAGTAGCAGAAAGTGATACTTGTAAAGTTAAGGATGATATAC
AATCTTTTAATATACAAAGACGCAGGGATCCTGAAGTTACCAATAGCACA
GATAGTAGTATAGGTCAGTTATCAGATAGTTCTAGGGATCTACATTCTCA
AGAGTCTTTCCATATACCCAGCACCAATTTTGATCTAAATAATGTAGATA
ATCAACCTAGCAAGTTTTCTGTTCCGCAAGCATATAATGCCCCAGTTATT
TCGAATGGTTATGCTGGGAACCAGACTAGAAGTTTTGATTTGGATACCAG
TGCTAATGATTCTTCTTATATGCTACAAGATGAACTGAAATTGCATGATG
GAAGACATGGCAGTGCGTTAGTAAACCACGATAGTATTTTAGCAGACGGA
ATGGGAGAGAGCAGCATCATATCAAATATTTTGTCAATGGACTTCGATTC
ATGGGATGAATCTTTGGCTTCACCGCAGAATTTGGTTAAGTTACTAGGTG
AAACTGATAAACAGCTGGGTTCTCTTGGTGCATCGAATACGAAGAAAGTA
CAAAACAGCAATCAGTCTAGGTTCTCTTTTGCAAGAGAGGAACATCAAGC
ATCCAATTTTGGGCCATCATCTGCTGGCGTTGAGCAAACTCTTAGGAATC
ATTCTTTTACAAATGGTTTCAAGGACAATGGAAACCATTATCGCAGTGGT
ACTGCCAATGGTTATTCTACTTTGAGTGCGCATCAACCTGGTGATTTTGC
AAGCACCCATTTTCATAATTCACCGAACAGGTTTTCTGGTGAGTTCAGAG
TTGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNATTTATTATAGAATTTAATATATACAAGTTTAAATTCTTCTCAG
GGGAGCGCGTGCTTCAAATAGTCAACCATCACCAACAAGCATGGCAAGCT
CAAATGGACCTTCTAAGCAGAAATCTGATACAGGTGGCATTTCAGTCGCA
TTTTCAACTGCAGTAGTGAGCCCAGCCAAAGTCTCCTTAATGCACAATAC
TTCAGGAAAGAAACTTAATGGAGAAGGTTGGTTTCCCTTACAGAGGAATA
AATCTGTTCCAGTAGCATCTGTGGGAATACAGGATGTAGATAAGCAACAA
AAGTCATCGAATACTTCCACCAAGATTGGACATTTTGATAAACTAGTGAC
AAGTGACCAGATATCTACGCCATCGCCAAAAGTAGATGGGTCCACAAGCA
TGCCAGATATCACAGTGCAGTCTTGCGGTATTAATTCAGAAAGAAATTCA
CATCTACCTGTAGAGAGTAAATTTAAGGAATTATGTTCTGATATGTTGTC
TTTAAATATAATTACTCATGGGCCACAGCACGTAGACACAAAATACAGAG
AACTCTTGTCAACAGATGCTGCAGCAAAGGATGCATCCTCCAGTAAGGAT
CCTGTTGCAGCAAGGGATCTGTCTGAATTTAAATTAGTGTCGCCGTCGCA
AGTAGCAGAAAGTGATACTTGTAAAGTTAAGGATGATATACAATCTTTTA
ATATACAAAGACGCAGGGATCCTGAAGTTACCAATAGCACAGATAGTAGT
ATAGGTCAGTTATCAGATAGTTCTAGGGATCTACATTCTCAAGAGTCTTT
CCATATACCCAGCACCAATTTTGATCTAAATAATGTAGATAATCAACCTA
GCAAGTTTTCTGTTCCGCAAGCATATAATGCCCCAGTTATTTCGAATGGT
TATGCTGGGAACCAGACTAGAAGTTTTGATTTGGATACCAGTGCTAATGA
TTCTTCTTATATGCTACAAGATGAACTGAAATTGCATGATGGAAGACATG
GCAGCGCGTTAGTAAACCACGATAGTATTTTAGCAGACGGAATGGGAGAG
AGCAGCATCATATCAAATATTTTGTCAATGGACTTCGATTCATGGGATGA
ATCTTTGGCTTCACCGCAGAATTTGGTTAAGTTACTAGGTGAAACTGATA
AACAGCTGGGTTCTCTTGGTGCATCGAATACGAAGAAAGTACAAAACAGC
AATCAGTCTAGGTTCTCTTTTGCAAGAGAGGAACATCAAGCATCCAATTT
TGGGCCATCATCTGCTGGCGTTGAGCAAACTCTTAGGAATCATTCTTTTA
CAAATGGTTTCAAGGACAATGGAAACCATTATCGCAGTGGTACTGCCAAT
GGTTATTCTACTTTGAGTGCGCATCAACCTGGTGATTTTGCAAGCACCCA
TTTTCATAATTCACCGAACAGGTTTTCTGGTGAGTTCAGAGTTGCAGGGT
TTTTTTTACAGATAGTGTCTATTGATATATATTTTATTATTTTGTGCAAG
TGTGGCATTTTATTGATAGATTGCTTGTGGAGAATAAATACTAAATTTGT
TGTTAAATATGCTCATCATTTATGCCTTTAGTTTTGTTTTCTTTTACTCC
GTATGTGCATTCATGTACATTAAAACTTTTGGCGATTTACTCTTTAGCTA
GTTCTGTAATCGACTTAGTTGTGTGAGAACTGACATGGGTTTTGTGCTTT
TGGCTGAAAATTGAGCAAATCATTGTTCTTGGATCTGCTGTGACATGCTT
TTGTTGATATTCTCCTTCTGCTTTTAAAAATTGTGACTGAGATGCTTTTT
TTTCCTAATTTTTTTCTGATATGATTTATTGTACTTTGATGTCAAAATAG
TTTCTAGAGCACCTGTAACAGCCCCTCCTGGATTTTCCGGGCCTACCAGA
GCTCCACCTCCAGGCTTTTCCTCTTTTGAAAGGATGGAACAGACATTTGA
CGTAAACTCTGGTTTGTATTTTACACTTCACATTGAATGATTTGTTTCAA
GCACATCTCACATCTCTGAACTTACATTTTATTGCCTGATTTCTTGTAGG
GAATCATTTGCTCAACAATTCATCTTACTTGAGAAATGCTAGTCAGTCAC
CTTCTAGTATGTATAATGATTCCACCAATGCAGATATAGAGTTTATTGAC
CCTGCAATATTGGCAGTAGGTAAAGGCAGACTTCCTAATGGGTTTAATAA
CCCTAGTTTAGACATGAGGTCAACTTATCCTACCCAGATGAGTAATTATG
AGAATGAGGCAAGATTGCAGCTAATGATGCAAAGATCTGTTTCACCACAG
CAGAACCCCAGATATGTCGAAATGGGTAACAGTTTTTCTTCTTATCCGGA
TAATTATGGAATGCCTCCAACGATTTTTGAGCAGGCTTTGGCAAACAATG
GATCCCAGTATTCTCAATTTGGTCTTTCACAGTCCAGAAATCAACTTGTG
TCGAGCGGTAGTTGGGATGGTTGGAAAGAGGTTCTGAGTGGAAATGGCTC
AAATGCGGCAGAGTTTCTTAGATCGGAGAGATTGGGAGGAAATAAGTACT
TTAGTGGTCGCCAGGATTCGAAGTACCGGATTTCCAGTTCTGGAGATTTA
TATAATCAAACATATGGGATTTGA

Sequence Length:

15424

Sequence Checksum:

1e5271e218230b41c5b42a1aa0480191

View location in JBrowse:

DCARv2_Chr5:33784100..33799523+

Cds:

>DCAR_018847cds ATGAGCAACGAGGGAGAAAAGACTTGCCCTCTCTGTGCTGAAGAGATGGA TTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGTTATGAGATTTGTG TTTGGTGCTGGCATCACATAATAAACATGGCTGAGAAAGACAATGTAGAA GGCAGGTGTCCAGCATGTCGCACCCCTTATAACAAGGAAAAAATTGTGGA AAAGGCAGCTCAATGTGAAAGGTTGTTGTCTGAGTTGAATGTGGAGAAGA AAGGGAAGTCAAAGTCGAAAAGTAAAGCACCTGATGGTAGAAAGAACCTA AGTAGTGTTCGAGTGATTCAACGAAATCTTGTCTACATTGTGGGGTTACC TCTTACTTTGGCAGATGAAGACCTCCTACAAGGAGCGGAATACTTTGCTC AATATGGGAAGGCAATCATGAGCAACGAGGGAGAAAAGACTTGCCCTCTC TGTGCTGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCGTGCAAGTG TGGTTATGAGATTTGTGTTTGGTGCTGGCATCACATAATAAACATGGCTG AGAAAGACAATGTAGAAGGCAGGTGTCCAGCATGTCGCACCCCTTATAAC AAGGAAAAAATTGTGGAAAAGGCAGCTCAATGTGAAAGGTTGTTGTCTGA GTTGAATGTGGAGAAGAAAGGGAAGTCAAAGTCGAAAAGTAAAGCACCTG ATGGTAGAAAGAACCTAAGTAGTGTTCGAGTGATTCAACGAAATCTTGTC TACATTGTGGGGTTACCTCTTACTTTGGCAGATGAAGACCTCCTACAAGG AGCGGAATACTTTGCTCAATATGGGAAGGTGCTTAAAGTGTCAATCTCTC GTACGGCAGCTGGGACCATTCAACAATTTCCAAATAGCACTTGTAGTGTA TATATTACTTATTCAAAGGAGGAAGAAGCAGTTCGTTGCATTCAGTCAGT GCATGGTTACACATTGGAGGGTAGACCATTAAGGGCCTGCTTTGGAACCA CAAAATATTGCCATGCATGGCTGAGGAGTGTGCCATGCATCAATCCTGAT TGTCTATACTTGCATGAAATTGGTACACAAGAAGATAGTTTCACTAAAGA TGAAATAATATCAGCATACACAAGGGGAGCGCGTGCTTCAAATAGTCAAC CATCACCAACAAGCATGGCAAGCTCAAATGGACCTTCTAAGCAGAAATCT GATACAGGTGGCATTTCAGTCGCATTTTCAACTGCAGTAGTGAGCCCAGC CAAAGTCTCCTTAATGCACAATACTTCAGGAAAGAAACTTAATGGAGAAG GTTGGTTTCCCTTACAGAGGAATAAATCTGTTCCAGTAGCATCTGTGGGA ATACAGGATGTAGATAAGCAACAAAAGTCATCGAATACTTCCACCAAGAT TGGACATTTTGATAAACTAGTGACAAGTGACCAGATATCTACGCCATCGC CAAAAGTAGATGGGTCCACAAGCATGCCAGATATCACAGTGCAGTCTTGC GGTATTAATTCAGAAAGAAATTCACATCTACCTGTAGAGAGTAAATTTAA GGAATTATGTTCTGATATGTTGTCTTTAAATATAATTACTCATGGGCCAC AGCACGTAGACACAAAATACAGAGAACTCTTGTCAACAGATGCTGCAGCA AAGGATGCATCCTCCAGTAAGGATCCTGTTGCAGCAAGGGATCTGTCTGA ATTTAAATTAGTGTCGCCGTCGCAAGTAGCAGAAAGTGATACTTGTAAAG TTAAGGATGATATACAATCTTTTAATATACAAAGACGCAGGGATCCTGAA GTTACCAATAGCACAGATAGTAGTATAGGTCAGTTATCAGATAGTTCTAG GGATCTACATTCTCAAGAGTCTTTCCATATACCCAGCACCAATTTTGATC TAAATAATGTAGATAATCAACCTAGCAAGTTTTCTGTTCCGCAAGCATAT AATGCCCCAGTTATTTCGAATGGTTATGCTGGGAACCAGACTAGAAGTTT TGATTTGGATACCAGTGCTAATGATTCTTCTTATATGCTACAAGATGAAC TGAAATTGCATGATGGAAGACATGGCAGCGCGTTAGTAAACCACGATAGT ATTTTAGCAGACGGAATGGGAGAGAGCAGCATCATATCAAATATTTTGTC AATGGACTTCGATTCATGGGATGAATCTTTGGCTTCACCGCAGAATTTGG TTAAGTTACTAGGTGAAACTGATAAACAGCTGGGTTCTCTTGGTGCATCG AATACGAAGAAAGTACAAAACAGCAATCAGTCTAGGTTCTCTTTTGCAAG AGAGGAACATCAAGCATCCAATTTTGGGCCATCATCTGCTGGCGTTGAGC AAACTCTTAGGAATCATTCTTTTACAAATGGTTTCAAGGACAATGGAAAC CATTATCGCAGTGGTACTGCCAATGGTTATTCTACTTTGAGTGCGCATCA ACCTGGTGATTTTGCAAGCACCCATTTTCATAATTCACCGAACAGGTTTT CTGTTTCTAGAGCACCTGTAACAGCCCCTCCTGGATTTTCCGGGCCTACC AGAGCTCCACCTCCAGGCTTTTCCTCTTTTGAAAGGATGGAACAGACATT TGACGTAAACTCTGGGAATCATTTGCTCAACAATTCATCTTACTTGAGAA ATGCTAGTCAGTCACCTTCTAGTATGTATAATGATTCCACCAATGCAGAT ATAGAGTTTATTGACCCTGCAATATTGGCAGTAGGTAAAGGCAGACTTCC TAATGGGTTTAATAACCCTAGTTTAGACATGAGGTCAACTTATCCTACCC AGATGAGTAATTATGAGAATGAGGCAAGATTGCAGCTAATGATGCAAAGA TCTGTTTCACCACAGCAGAACCCCAGATATGTCGAAATGGGTAACAGTTT TTCTTCTTATCCGGATAATTATGGAATGCCTCCAACGATTTTTGAGCAGG CTTTGGCAAACAATGGATCCCAGTATTCTCAATTTGGTCTTTCACAGTCC AGAAATCAACTTGTGTCGAGCGGTAGTTGGGATGGTTGGAAAGAGGTTCT GAGTGGAAATGGCTCAAATGCGGCAGAGTTTCTTAGATCGGAGAGATTGG GAGGAAATAAGTACTTTAGTGGTCGCCAGGATTCGAAGTACCGGATTTCC AGTTCTGGAGATTTATATAATCAAACATATGGGATTTGA

Pep:

>DCAR_018847pep MSNEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIINMAEKDNVE GRCPACRTPYNKEKIVEKAAQCERLLSELNVEKKGKSKSKSKAPDGRKNL SSVRVIQRNLVYIVGLPLTLADEDLLQGAEYFAQYGKAIMSNEGEKTCPL CAEEMDLTDQQLKPCKCGYEICVWCWHHIINMAEKDNVEGRCPACRTPYN KEKIVEKAAQCERLLSELNVEKKGKSKSKSKAPDGRKNLSSVRVIQRNLV YIVGLPLTLADEDLLQGAEYFAQYGKVLKVSISRTAAGTIQQFPNSTCSV YITYSKEEEAVRCIQSVHGYTLEGRPLRACFGTTKYCHAWLRSVPCINPD CLYLHEIGTQEDSFTKDEIISAYTRGARASNSQPSPTSMASSNGPSKQKS DTGGISVAFSTAVVSPAKVSLMHNTSGKKLNGEGWFPLQRNKSVPVASVG IQDVDKQQKSSNTSTKIGHFDKLVTSDQISTPSPKVDGSTSMPDITVQSC GINSERNSHLPVESKFKELCSDMLSLNIITHGPQHVDTKYRELLSTDAAA KDASSSKDPVAARDLSEFKLVSPSQVAESDTCKVKDDIQSFNIQRRRDPE VTNSTDSSIGQLSDSSRDLHSQESFHIPSTNFDLNNVDNQPSKFSVPQAY NAPVISNGYAGNQTRSFDLDTSANDSSYMLQDELKLHDGRHGSALVNHDS ILADGMGESSIISNILSMDFDSWDESLASPQNLVKLLGETDKQLGSLGAS NTKKVQNSNQSRFSFAREEHQASNFGPSSAGVEQTLRNHSFTNGFKDNGN HYRSGTANGYSTLSAHQPGDFASTHFHNSPNRFSVSRAPVTAPPGFSGPT RAPPPGFSSFERMEQTFDVNSGNHLLNNSSYLRNASQSPSSMYNDSTNAD IEFIDPAILAVGKGRLPNGFNNPSLDMRSTYPTQMSNYENEARLQLMMQR SVSPQQNPRYVEMGNSFSSYPDNYGMPPTIFEQALANNGSQYSQFGLSQS RNQLVSSGSWDGWKEVLSGNGSNAAEFLRSERLGGNKYFSGRQDSKYRIS SSGDLYNQTYGI*