DCAR_002567 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_002567

Identifier:

DCAR_002567.gene

Locus Tag:

DCAR_002567

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_002567, is a part of gene, DCAR_002567.
The genetic_marker, MK005100 K2544, is located in gene, DCAR_002567.
The genetic_marker, MK006442 K3886, is located in gene, DCAR_002567.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_002567	DCAR_002567.mRNA	mRNA	DCARv2_Chr1:30681281..30689175

Sequence:

CCGAAACATATACTGTATGTTGTTAAAACTCTTCTTGTTCTTAAGGTTGT
CTAGCTGAAGGGTTTTGTATGTCTGTCTGTATGTATATGTCACACAAAAC
AAAGTACTAAGATATCCGTGTGTGTGCCTTGATTTTAATTCAAAAACACA
AGTACAACAGAGAGTACTAGAGCTATTGTGTGCTTGAATGAGAAACTTGG
ATGATGCTTATCTCAGTTCCAAAACAATGATCAAAGCTCTTGTTTTTGTG
ATACTATTATCCCTTTCATTTAGGTCAATCTCTGCCGTTGATTTTGAAGA
TGAAGATGGACTAGTACAATGGCAGATCCTCACTAAATTCAATTTCTCTT
CTCAGATCCGGACCCATCCTCACATCCTGCTCCTGATCACTGTTCCATGT
AATTCTTTCTCCTTTTCTTCTTATATGTGTATGTTTTTACTTTTTGTGTG
TGTGTTTGTGCGTGTGTGTTTTTTTTCCTTCGTTCAGGGAGTGGATAAAG
ATGAAGGTATTGGCCTTTTTGGCTAACATTTTAGCTTTAAATTCAATCCT
AATCACTAAAAATTACAAAATTTGCTGCTGGGTATTTGTAAAAGCTGGAA
AGATTTAACCTTTATACGGGTTTATCAATTTGAATTGAATAAACTTATTG
GCTTGTACAGTTAGCAGATTAATGTTTGAGCTCAAAATGCATTCCTATTT
TCAGTATTTGCTAAAGGGTATTTGTAAAAGCTAGAAAGATTTAACCATTA
TATGGCTAGTATCACCTGTGCTACGATGTTTGCTAATTTGTGGTTATTTT
GGTTATTGATGAAAGCGGATGTTAGCATAACGGTACTAATAAGAACAATA
TAACATACATTTTTGAGTGATTAGCTTACTTCTGAACTAAATATAAAACA
GTTCTATACCAAGCCATGGTTCTACAGAGTGAGTTAATTTTGCAGAATTA
TGAAGTTAATGTTTTCGAGATGGTTATTTTTTCTTTACACATAAGGTTAC
TATGCCATGGAGGATATAGAAAATCTCTAAAGCGGGGTTCATGTACGAAT
ACAGTACTATTATTATCTAGTACAGAAGATAAATAACCTTATAAAGTCCA
TATTAGTTTTATATCAACCTTGTCAATCACCATTACATAACAACACATGT
CTTCTTGTCGTCCGGGATCTAGACAAAATGTATGAGATACTAAAGTTCTG
TCTGAAGTTAAATTGCAGGCGTTATTATGTTGGTGGTGCTATATTTTTGG
TTTCATGATCTTGTATTTATAGGATTAAAAAAGGAAATTGGTACATAGCG
TTCAGTAATTTGACTAGCAAAGTTTGAATGTAGGTTACCTCTTCATAGCA
AGTAGTTAACATGGTTCTAATGGCAATCTATTGTGACTTGGTTGATTTTT
TTGCTAAATATGGTTGTTGGTAGTTTTCTTGATTACTTCGCAATAGTACA
TAAGTTAATGGGTCATTTGTCATATCACATATATAATGTTGGCAGCATAT
GCTCCATGATCCTGATCAGTGCATTATTAATGTGATCAGGGTTCGGCGAA
TCTCGATCTCTTATGAGGGATTTGGCTCAAGTGGTTAATAGTAAGCAAAA
GAAATTTGGTACTCTGAAGCTCATGTTTGTACATAGAAATAGTGATAAGG
TGCTTGCTGAAGCTCTTGGCGCTAAAGACGGAATAAAATTTTTGTATTTT
CGCCAATCTTTGTCTTACAAATACCAAGGCCCGCTTCGGGTACAGAACAT
ATTGTCTTCTGTTTATCATCTTATGTCACTTCCGCCGAAAGATATTCCCC
TCAAATTTTTAACCACGGCCGAGGACTTGAAATCATTTACCGAATCAACT
GACAAGGTATTACTAGTCATGGAATTCTGCGGATGGACCTCCAGATTACT
GACCAAGGCCAAGAACAGTGTGACTGATAATGGATTTGGTATTTTCTGCT
CCATTTAAAGTTATATGCACTTAACTGCCCACAGGATTAATAGATATAAT
TACCTTGAAATTATATGGTCGCAATTGGAACATTAGAGGCCAAGTTTATA
GTTAGAGTTGGGTCAATGAAATTGGCATTGTAGTTTTTTTCACATCTTTG
ACTATCATCGCGTCACATAGCAGCAGATCCGGTTTCTTTTATGTTGATAT
AAACGTAATGTTTGGCTTCTCATATTCATTTTAATAGAACAATGTTATTC
TTTTAATAAAATGATCTAATTTGTGAACTTCTTTCTTTGCTGTTTAAATT
TCACTAAATTGTTTGAGCACAGTTTGTTATTTGACTAAGTTTCACCTGGA
TCGGTGGTTCTTAAGATTACCTACACTGAGGCGCTAAAACCTTGATTATT
GCAGAGAGTATCTTTAACATTGCTAATGGAACATTTTCTCCAGGAGGGAA
GAATATGCAGAAGGTGCAGAACTTTTTTGGTTACTGTAAAAATATAAAAC
AAATAGAAATTTGGCAACTACTATATAATATATTATGATAATAACAGCAG
ATCGAAAGCGAACAGAACTGTGGTGCTTACAGTGGAAATCTTTGGACTGG
AGAGTTTTCCGCAAATAATATGAGTCAATTCCCGGGATCTGGGCTGCCTA
CTGACGGGGATTTCTGTAGCTCTGAAGAGTTCCATAAGTATGAAACTTTT
TTGGTAGAGTTGTCGGTAATTGCAAAAGAATTTTTCCTGCCACCTGAAAG
GATAAGATTTGGTTTGGTCCAGGAGAGAGCTCTGCTTTCATTCCTTGGTA
TCAAATATTCTGGTCCATGGTTGGCGATGCTTCACTTTGCAGGATGCCCT
AGTTGTTCAAAGGTTCTGGGAGAAGGTGATGATATCAGACATGCTATAAA
GATGCAAGCTTCACCTGTTTTAGAGGCATGTTGTTCTATTGACCGTTTTA
CTTGTCATCTTCATGTTTGATATTAATGCATTTATGTACTTTATTCCTGA
AGAATAAAGATTAATCACGTGTTAAAAAAATGTATATTTCATATGAACTG
CTCTTCGCATCTTCTCACCTGAACATTTTTAACAAACCCAAAGTGCACAC
ATTTACTGTTTAGCTAGATGTAGTGGAAACCTTTATCATTTTGTGAAAAA
GCATCATAAGTCAGCAGTTGCATAAATTGCCACTGTCTGTAGTATTAGAC
CAGTCTTTTTCTTTTTACATGCTGACATCATTCTGTTGGAAGTATGGAAT
TTTGTCATCCGCAGCAAGAGTATTATGTTGTGATAAGATGTTCCACTAAA
TCTATCCACACCATACTCATTCTGTTTTGTCATTTTTTGATATTGTATGC
AGCTTGAGGGTGATGCGAATGGTCTTGATCCTCCTATTCCTGCAAACAAG
CCATCAATAGTTCTTTTTATTGATAGATCATCTGAGTCATTGGATGTTAG
GAAAAAGAGCAGTGAAGCCCTTGGTGTATTCAGAGAATTGGCTCTGCACC
ATCAAATGAATGAGGAAACAACTGCAAAGTCTCAAAGAACTTCCATGGGA
AATTACCAATCGTCACTTAGTACTCTTGGACATCCTAAATTTGATATGTC
TCCTTCATCTCAAAAGATAACGGAACTGAAAGATAAGATGTCTGTCATGT
TATTGGACAAGGGAAAACACATTACCATCAATAAAGCTGTTACAGATTTA
CAAGGTGGCTCTTTGCAGGAGATACTGACGTATCTTATTCAGCATAAGAA
AGAAATCAAAATAAGCTCACTTGCCAAAAATGCAGGATTTCAACTTTTAT
CGGATGATTTTACTGTAAAAGTTGCAGAAGAGTCACCGGCAGACTTAAAT
GTGCAGTCTAATCAGGTTTCGACAGAAGTACAGGAAGAACATCCTGAAGG
CAGTGACAGTGGTCATCTTCGCCAGAATCAGACACCACATATGGCTGGTG
GCAGAGTTGAAAAACCTGAAAATTCTGCAGATGGTAAACAGAAAGAAGTC
AAGGAAACTATTGTTGATTCAACCAAAGTATTATCTGCAGGTATCGATTC
TCGTTATAATGTTGACCACATTGCTAATACTGCACACAGTGAGAAAATTC
CTCCAAATGTTGATCACAATTTCCCAGGTTCTGTGGGGTCCTTTTTCTTT
TCTGATGGTGGATTTCGGCTACTTAAGGCTCTGGCTCCATCGTCATCGAT
TCCAATAGTTGTAATAATCGACCCCCTTTCCCACAAGCATTACTTGTTTC
CTGAAGAGGAAGTTTTCGGATATTCTTCACTTAGTAATTTTCTGGAGAGG
TTTAATAATGGTAGTCTTGTTCCATATAAACACTCCGAGACTTTTACGCG
GGCCTCTAGGGAGTCTCCGAGGCCACCTTTTGTAAATTCAAATTTTCATG
CAGTGAACTCTGTCCCTCGACTTACCACCAATACATTTTTGGAGTTAGTT
GTTGGCAATCAATCAGATATGGCAAATTCCAGTAATGCTTGGAAGAAGGA
TGTTTTAGTTCTTTTTAGCAATACTTGGTGTGGTTTTTGCCAAAGAATGG
AACTTGTTGTTCGTGAAGTATACTCGGCTTTTAAGGGGTACTCGAGGATG
CTGAAGGATAAACCTTCATTGATATCTGGTAAGTAGTGAATATTTAGTGT
TAAACTGTTCAAGTAGAGAAGTATTTCGAGTTATGATTTTTTTTCATAAA
CTAATTGCTTATATCTCCTTCTCATTTATATACATTATTATCACTATATT
TTGCTTTGATCTAAAATTCTCTCTTCAATTTGCACAATCCTCGTAGAACG
TTTTTTCCTGGTTTTCTATGAAGGTAACTTACAAGCATGCTAAAAATTTG
TTCCCTCTTAACTTTATTCATCACTAGCTTGCCGTACAATAGAAGAATGA
AATATGATTTAAGATTTAAGTGCCAAATTTGCCGTTGGCTGTTACCAGAT
GTCCAGATCAATGATAAAGATATTTACTCGTAGCACACACTCAGATTTTT
GACAGACTTATAGAGTTTCTATAAAAACATGACTAGCTACTTATTTAGGA
TAGATTTATTTATTTTTCTTAATCAAGAAAGAGAAGAAAATTTCAACCCT
CTCACTGTCCTGCTCACCTACTCCATAACTCTTGCTCCAAACCTCCATCT
GCCAGAATGGCAAAGAGCTTTATTGTACTTCTGAACTCTTGCAAGTTTAT
TCAGTTTGGTGACTGTTGTATCTCCTTTCTTTTGGTTGGTTTCCCCAACA
GGCATAGGAAGTATCACATTAGTGGTAGTGAACCAGAACAGGTAGCGGTG
AAAGTTAAAGTAGAGATTTCGTTAATTATCCGCTGGTAGATATGAGATGT
GGTGCTAATGATATTGCATACTATAGCACTTAGCAAATTGTATGTTGATG
AACATCTGCTTCTGCATCCTTGCCTGGTAGTGGGAAAGAATTAGATGAGA
TTATACACACACACACACACGTTAATTTCGTAGGGTGTATCTGTAACTAT
ATATAGGATAAATACATTTAGTACTTATATTTAAATTTTCATTTATCTGA
ATCGGCGCATCACTCGAGTTAACCAGTTCTGCACAATTTTCCTTTATCTT
TTATTATAACCTTTGACTATATCTTAAACGAGTTTAGAAGTTTGATCTTG
TATTTGTAATTGCAAAAAACCTAAACTTTCTTAGTTTTATTGATAAATAT
GTCGAGAGCTTTGATAATGTACCCAAATTCCCACTATAAAGTTGTATTGT
GACGATACCCCCCAAACGTCAGGGCTTATCTTTCTACTCTTCCTGTCTCG
GAGGCTGACGAAGTATGGCACACAAGTTTTCTTTAGGAGGTACCATATGG
TGGCTAGACATCCTTTAGAGATGTTCATGCAGTCAGACTCTCTGGAACTC
GTTGAAGGACAGATTAATCTATATATCCCAGCTTCTTTTCTGCTTAAATA
TGCAACATAAGCTTGTAATACAGATCACATGTGTTCTTTAAAATAATTTT
AGTTTTTCAAAGAAATCCAGATTATCCAGAAAAAACAAATCACATATGAT
TTACTTTTGTTATTAAAATATGCTGGATTAAAACTGGTGTATATCTTACA
TTTAAGTTGTTTAATTTTAGATAAGTATATGTGACCATGATGTCAGTGTA
CTAAAGTCTTAACTAAGAAATATGTTATGCTTTCACTTTCTGCATACAAT
CTTAAAATCTGATTTGTACAAAGTGAAGAATGTTTAGAACCATGGAATGA
AACAAATGTCTATTTTTGTGTTTGATGGGTGTTTAGATATGTGGCAGATA
ATGTGGAAAACACTAATCTGAAGCTCCCGTTGATTTACCTAATGGATTGT
ACACTGAATGATTGCAGTTTGATCCTGAATTCATCTCTGCAGGTAGACTT
GCAACGTCTAATTTTCATTGTTTTCCTCTGTTAGTATATCTGATGCATTC
CAATAGTTATGCTAGAAATTAATTGACTCGTTGTATCAACTAGATTTTGT
GCAGAATATATTCGTTAAATCCTTCAACAAGTAGTGGCTGACTTTTTAAA
TTACAATTCAGCTCATATATGTTTTTTGATAAAATGGCATTACATAGAAT
GCAAATGTATTGATCTAAGCGTTACATTGAATGCAAATTTACTAATCTAG
AAGTGCCAAGATATTTATCCGGTACAGAGAGATTGCATTTGTTCGTTTTG
GAGTTCCCATACTATAAATCATGTCGTTAGATGAATTCAACCAGTGTATG
TACTTAAAATAGCTCCTTAAACACCGATATCTTTAAATATACTCCAATTT
CGCAAGTGATTTTGACTCATTTGCACAGTTATAGTCATCATACTAATTCT
TGAGCTACGTCCTCTTCTCCGCATTCCGTGACTTCATGAGTCCTTTAAAC
GGAATCTGGATTGTGTTGCTCTGGCAGAAATGAGCATCAATAAAAATTAA
AAAAGTAGTTACAGAGGAAAATAAGTGTCGTTAAAAGTTGTGGGTATATA
TTTGACTTGATGTTGAAGTTTAAGCTTTCCCGCACCCTACCCCAACAGCC
TCCTCATGACTTGATCCTGCGTCTGCAGTCATATTTTACCTAGTAAAGAC
ATGAAGTGACAAGCACATACGGCTGTGTAGGTCTATTGTTGTAATTTAAT
ATTACATTGTTTCATTGTTACAATGACATCAATACTGTTTTTCACCTTCT
CATTTACATTCAATGTGCAGAGGGATCTCTATCCTTCTCTGCTGTTATTC
CCAGCAGAAAGGAAAGAAGCTGTTCCTTATGGAGGTGATATCACAGTAAC
TCAAATTATTAATTTTATTGCTGAATATGGAAGTAACTCGGAGAGGCTTT
TCGGAGAAAATGGTAATTGGAACTCTGGTTTAACTTTCTGGCTCGAAAAA
GATTTAGCCTTGTTTTTTATTTAACAAAATAGCGAAATTCTGCAGGTTTT
TTATGGAATAAAGCCTCACAAAGAGTCAAGTATGGAAATTTGCATAAAGA
TGTGACACAGACTTCAAATATTAAGGATCCTTCTTCATTGACAAATATAT
ACCATGAGGTTCTACTGAAAGACAGAGCACAGAAAATAGAAGTTAAAGAT
TATGAAATGAGTCCGCAAAGGTACAATCGCCCACATGAAATAGGCACTGA
CCTGGTTGCTGGTTCAATACTTGTTGCAAGTGAGAAGCTTGTCAATGTAC
ATCCTTTTGACGGATCTAAAATTCTCATTGTTAAAGTAAATCAAAGTACG
GGATTCCAAGGTGTAATTATCAACAAGCATATCAGTTGGGACACACTAGG
AAAATTAGATGAAGGTTTGGAACTACTAAAACGGGCACCTTTATCTCTTG
GGGGTCCTGTGATAATACGAGGAATGCCTCTTGTTTCTCTATCTCGAAAG
CTTATGAAATATCGTGATCAGACTGCAGAACCTGAGATCCACTTTCTTGA
TCAGTGGGAGACGCTTGATGTCATAAAAGCATTACAGGCGGGAGACCGTT
CTATTTCAGACTACTGGTTTTTTATGGGGTACTCAAGTTGGGAATGGAAG
CAGCTTTTCGATGAGATTGCAGAAGGATCCTGGAAAATAAGCAATGGTAT
GGAACATTTAGAATGGCCTGAGAGTGATTAGGCTCGCATGTTAAATTATT
CAAAGTTTTGGAGCTTTTTAATCAAGATTTTTAAGACCAGGAAAAGAAGG
TAGACTGAGTATCAAAGTTTTGAGGTTAGCAAATAGCAGCACATGAATCT
GATGGGTAATCCCAAAAAAAGATCCTACTCCACACATTTTACTTTTGACA
GATCAGTGTAACAAAACATGTACATTAGTGATTTTGTATTCTATCTTACC
ATTTTTATTTTTGACAGCCAACCCTGTAATTTAGCTATATTTGTCGAGTT
TGTGGGGAAATTAGTCAATACATGTCTTGTCGAGCTGGTGAGGAAATTAC
CCCTCGTTTCTAAATATATGTCT

Sequence Length:

8423

Sequence Checksum:

3e0a4573c06d3b74b00f4e51f6e619a8

View location in JBrowse:

DCARv2_Chr1:30680940..30689362-

Cds:

>DCAR_002567cds ATGAGAAACTTGGATGATGCTTATCTCAGTTCCAAAACAATGATCAAAGC TCTTGTTTTTGTGATACTATTATCCCTTTCATTTAGGTCAATCTCTGCCG TTGATTTTGAAGATGAAGATGGACTAGTACAATGGCAGATCCTCACTAAA TTCAATTTCTCTTCTCAGATCCGGACCCATCCTCACATCCTGCTCCTGAT CACTGTTCCATGGTTCGGCGAATCTCGATCTCTTATGAGGGATTTGGCTC AAGTGGTTAATAGTAAGCAAAAGAAATTTGGTACTCTGAAGCTCATGTTT GTACATAGAAATAGTGATAAGGTGCTTGCTGAAGCTCTTGGCGCTAAAGA CGGAATAAAATTTTTGTATTTTCGCCAATCTTTGTCTTACAAATACCAAG GCCCGCTTCGGGTACAGAACATATTGTCTTCTGTTTATCATCTTATGTCA CTTCCGCCGAAAGATATTCCCCTCAAATTTTTAACCACGGCCGAGGACTT GAAATCATTTACCGAATCAACTGACAAGGTATTACTAGTCATGGAATTCT GCGGATGGACCTCCAGATTACTGACCAAGGCCAAGAACAGTGTGACTGAT AATGGATTTGAGAGTATCTTTAACATTGCTAATGGAACATTTTCTCCAGG AGGGAAGAATATGCAGAAGCAGATCGAAAGCGAACAGAACTGTGGTGCTT ACAGTGGAAATCTTTGGACTGGAGAGTTTTCCGCAAATAATATGAGTCAA TTCCCGGGATCTGGGCTGCCTACTGACGGGGATTTCTGTAGCTCTGAAGA GTTCCATAAGTATGAAACTTTTTTGGTAGAGTTGTCGGTAATTGCAAAAG AATTTTTCCTGCCACCTGAAAGGATAAGATTTGGTTTGGTCCAGGAGAGA GCTCTGCTTTCATTCCTTGGTATCAAATATTCTGGTCCATGGTTGGCGAT GCTTCACTTTGCAGGATGCCCTAGTTGTTCAAAGGTTCTGGGAGAAGGTG ATGATATCAGACATGCTATAAAGATGCAAGCTTCACCTGTTTTAGAGCTT GAGGGTGATGCGAATGGTCTTGATCCTCCTATTCCTGCAAACAAGCCATC AATAGTTCTTTTTATTGATAGATCATCTGAGTCATTGGATGTTAGGAAAA AGAGCAGTGAAGCCCTTGGTGTATTCAGAGAATTGGCTCTGCACCATCAA ATGAATGAGGAAACAACTGCAAAGTCTCAAAGAACTTCCATGGGAAATTA CCAATCGTCACTTAGTACTCTTGGACATCCTAAATTTGATATGTCTCCTT CATCTCAAAAGATAACGGAACTGAAAGATAAGATGTCTGTCATGTTATTG GACAAGGGAAAACACATTACCATCAATAAAGCTGTTACAGATTTACAAGG TGGCTCTTTGCAGGAGATACTGACGTATCTTATTCAGCATAAGAAAGAAA TCAAAATAAGCTCACTTGCCAAAAATGCAGGATTTCAACTTTTATCGGAT GATTTTACTGTAAAAGTTGCAGAAGAGTCACCGGCAGACTTAAATGTGCA GTCTAATCAGGTTTCGACAGAAGTACAGGAAGAACATCCTGAAGGCAGTG ACAGTGGTCATCTTCGCCAGAATCAGACACCACATATGGCTGGTGGCAGA GTTGAAAAACCTGAAAATTCTGCAGATGGTAAACAGAAAGAAGTCAAGGA AACTATTGTTGATTCAACCAAAGTATTATCTGCAGGTATCGATTCTCGTT ATAATGTTGACCACATTGCTAATACTGCACACAGTGAGAAAATTCCTCCA AATGTTGATCACAATTTCCCAGGTTCTGTGGGGTCCTTTTTCTTTTCTGA TGGTGGATTTCGGCTACTTAAGGCTCTGGCTCCATCGTCATCGATTCCAA TAGTTGTAATAATCGACCCCCTTTCCCACAAGCATTACTTGTTTCCTGAA GAGGAAGTTTTCGGATATTCTTCACTTAGTAATTTTCTGGAGAGGTTTAA TAATGGTAGTCTTGTTCCATATAAACACTCCGAGACTTTTACGCGGGCCT CTAGGGAGTCTCCGAGGCCACCTTTTGTAAATTCAAATTTTCATGCAGTG AACTCTGTCCCTCGACTTACCACCAATACATTTTTGGAGTTAGTTGTTGG CAATCAATCAGATATGGCAAATTCCAGTAATGCTTGGAAGAAGGATGTTT TAGTTCTTTTTAGCAATACTTGGTGTGGTTTTTGCCAAAGAATGGAACTT GTTGTTCGTGAAGTATACTCGGCTTTTAAGGGGTACTCGAGGATGCTGAA GGATAAACCTTCATTGATATCTGATAATGTGGAAAACACTAATCTGAAGC TCCCGTTGATTTACCTAATGGATTGTACACTGAATGATTGCAGTTTGATC CTGAATTCATCTCTGCAGAGGGATCTCTATCCTTCTCTGCTGTTATTCCC AGCAGAAAGGAAAGAAGCTGTTCCTTATGGAGGTGATATCACAGTAACTC AAATTATTAATTTTATTGCTGAATATGGAAGTAACTCGGAGAGGCTTTTC GGAGAAAATGGTTTTTTATGGAATAAAGCCTCACAAAGAGTCAAGTATGG AAATTTGCATAAAGATGTGACACAGACTTCAAATATTAAGGATCCTTCTT CATTGACAAATATATACCATGAGGTTCTACTGAAAGACAGAGCACAGAAA ATAGAAGTTAAAGATTATGAAATGAGTCCGCAAAGGTACAATCGCCCACA TGAAATAGGCACTGACCTGGTTGCTGGTTCAATACTTGTTGCAAGTGAGA AGCTTGTCAATGTACATCCTTTTGACGGATCTAAAATTCTCATTGTTAAA GTAAATCAAAGTACGGGATTCCAAGGTGTAATTATCAACAAGCATATCAG TTGGGACACACTAGGAAAATTAGATGAAGGTTTGGAACTACTAAAACGGG CACCTTTATCTCTTGGGGGTCCTGTGATAATACGAGGAATGCCTCTTGTT TCTCTATCTCGAAAGCTTATGAAATATCGTGATCAGACTGCAGAACCTGA GATCCACTTTCTTGATCAGTGGGAGACGCTTGATGTCATAAAAGCATTAC AGGCGGGAGACCGTTCTATTTCAGACTACTGGTTTTTTATGGGGTACTCA AGTTGGGAATGGAAGCAGCTTTTCGATGAGATTGCAGAAGGATCCTGGAA AATAAGCAATGGTATGGAACATTTAGAATGGCCTGAGAGTGATTAG

Pep:

>DCAR_002567pep MRNLDDAYLSSKTMIKALVFVILLSLSFRSISAVDFEDEDGLVQWQILTK FNFSSQIRTHPHILLLITVPWFGESRSLMRDLAQVVNSKQKKFGTLKLMF VHRNSDKVLAEALGAKDGIKFLYFRQSLSYKYQGPLRVQNILSSVYHLMS LPPKDIPLKFLTTAEDLKSFTESTDKVLLVMEFCGWTSRLLTKAKNSVTD NGFESIFNIANGTFSPGGKNMQKQIESEQNCGAYSGNLWTGEFSANNMSQ FPGSGLPTDGDFCSSEEFHKYETFLVELSVIAKEFFLPPERIRFGLVQER ALLSFLGIKYSGPWLAMLHFAGCPSCSKVLGEGDDIRHAIKMQASPVLEL EGDANGLDPPIPANKPSIVLFIDRSSESLDVRKKSSEALGVFRELALHHQ MNEETTAKSQRTSMGNYQSSLSTLGHPKFDMSPSSQKITELKDKMSVMLL DKGKHITINKAVTDLQGGSLQEILTYLIQHKKEIKISSLAKNAGFQLLSD DFTVKVAEESPADLNVQSNQVSTEVQEEHPEGSDSGHLRQNQTPHMAGGR VEKPENSADGKQKEVKETIVDSTKVLSAGIDSRYNVDHIANTAHSEKIPP NVDHNFPGSVGSFFFSDGGFRLLKALAPSSSIPIVVIIDPLSHKHYLFPE EEVFGYSSLSNFLERFNNGSLVPYKHSETFTRASRESPRPPFVNSNFHAV NSVPRLTTNTFLELVVGNQSDMANSSNAWKKDVLVLFSNTWCGFCQRMEL VVREVYSAFKGYSRMLKDKPSLISDNVENTNLKLPLIYLMDCTLNDCSLI LNSSLQRDLYPSLLLFPAERKEAVPYGGDITVTQIINFIAEYGSNSERLF GENGFLWNKASQRVKYGNLHKDVTQTSNIKDPSSLTNIYHEVLLKDRAQK IEVKDYEMSPQRYNRPHEIGTDLVAGSILVASEKLVNVHPFDGSKILIVK VNQSTGFQGVIINKHISWDTLGKLDEGLELLKRAPLSLGGPVIIRGMPLV SLSRKLMKYRDQTAEPEIHFLDQWETLDVIKALQAGDRSISDYWFFMGYS SWEWKQLFDEIAEGSWKISNGMEHLEWPESD*