Resource Type:
Gene
Organism:
Name:
DCAR_026296
Identifier:
DCAR_026296.gene
Locus Tag:
DCAR_026296
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_026296, is a part of gene, DCAR_026296. |
| The genetic_marker, MK007872 TP178742, is located in gene, DCAR_026296. |
| The genetic_marker, MK007873 TP92313, is located in gene, DCAR_026296. |
| The genetic_marker, MK009783 7_35082728, is located in gene, DCAR_026296. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_026296 | DCAR_026296.mRNA | mRNA | DCARv2_Chr7:35071141..35084871 |
Sequence:
ATGGCCGAGCTGTCTATGACCATAGCAAAGCTTCCTGTCTTTTATAAGCA
AAGGGATCTTCTGTTTTTTCCCCCTTGGGCGTATGCACTGCCTTCATGGA
TCATCAAAATCCCTATTTCATTTATTGAAGCTTTCATCTGGGTACTTCTT
ACTTATTACGTTATTGGGTTAGATCCAAATGCTGGAAGGTAAAATTTTAT
ATGTTGCATTAATATTAACTTCTTCTTTAAGTGACTCATGCATGTTTCTA
GGCTCTATAATGATAAACTATCCTACTGCAGATTGTTTAAACAGTACCTG
CTTTTAGTACTCATCAACCAGATGGCTTCGGCATTGTTCCGGACTATTGC
AGCAGCGGGAAGGAGTTTGATTGTTGCAAGCACGTTTGGTTCATTTGCAT
TGCTTATACTATTTGCACTTGGGGGCTTCGTGTTGTCACGAGGTAAAGAC
TGCAATTTCACCTTTTGCAAATTGTCTTAGTTGGACTAACCATGATGTTT
CTTTTCCTTCTCCATATTTGTCCAATAGTTAACGTAAAGCAATGGTGGGT
ATGGGGCTACTGGACATCGCCAATGATGTATGGGATGAATGCCATTGCAG
TGAATGAATTTCTTGGGCACCAGTGGAATCATGTAAGTATTAACTTTATA
GACTTTAAGCATGTGCCTGTGCTCCTGTTTGAATCTTCGTCAGTTGAGCC
ACAACCTAATTAATGGAACTTTTTTGTCAAAGGTTCTTCCTAACACTACA
GAGCCACTAGGAGTCTTGATCTTGAAATCACGAGGGTTCTTCCCCTATGG
ATATTGGTACTGGATAGGAGTTGGGGCATTGCTTGGATATATATTTCTTT
TCAATTTCTCCTTCACCCTGGCTCTGAATTTTCTTAACCGTGAGTAGTCT
GTACTTCTTAATATTATGTCTACTAATATTGAGAGTTTGTCTAATGATTT
TCACAAAATTTTGCAGCTCTTGGAAAGCCTCAAGCTATTATACCAGCAGA
AAGCTACAAAGGAAGAACTAAAGAGGGCGTTAATCAGCAGTCATTTAAAG
GTTATACCGACACTCTGTGCTCCTTTTTTTTTTTCTTTTTTTTTTTTCTG
GTTTTCCTANACTCTGTGCTCCTTTTTTTTTTTCTTTTTTTTTTTTCTGG
TTTTCCTATTTTTTGCATAAGATTGTCATTCTCTATATCCTAATAAACTT
CAATGACTTGCAGATGGAAGTGATCATATGGCAAAAAATTCACCTCCATT
TTTATCTGCTAGAACAGAAGATACTGCGGAGGCTCATAACAAGAGGAAAG
GAATGGTTCTACCTTTTGAACCACACTCAATTACGTTTAACGAAATCAAA
TATTCTGTAGACATGCCTCAGGTAATTAGTAAGATGAAACAGTATTTATT
CATGATTAGATATATATATAATCTTATATGTTTGTATATGACTTCATTGA
AGGAAATGAAAGAGCAAGGTATAAGTGAGGATAAGTTGATGCTCTTAAAA
GGTGTGAGTGGTGCTTTCAGGCCCGGTGTTCTTACTGCTTTAATGGGTGT
AAGTGGTGCTGGAAAAACAACACTGATGGATGTACTGGCGGGTAGAAAAA
CAGGTGGATATATTGACGGTCATATTACAATATCTGGTTATCCAAAGAAA
CAAGAAACCTTTGCTCGGATATCTGGATACTGTGAACAGAATGACATTCA
CTCACCTCATGTTACTGTCTATGAATCTTTGCTCTACTCAGCGTGGTTGC
GACTGCCTATAGAAGTTGATTCGAGGAGTAGAAAGGTCGGATATATAGTT
CTATACATTGTGTCGCGTGCTTCTTAGAATTAAAAGCAGGAAAAGTCGCA
GACAACCTAAATTTGAATTTAACTCTTTGGAACTTTTGCAGATGTTTGTT
GATGAGGTCATGGAACTTGTTGAACTAAACACTTTGAAGGATGCACTTGT
TGGCTTGCCAGGTGTAAGCGGACTATCGACCGAGCAGCGCAAGAGACTAA
CTATTGCAGTTGAGCTGGTGGCAAACCCATCAATAATATTTATGGATGAG
CCAACTTCAGGTCTGGATGCAAGAGCTGCTGCTATTGTTATGAGAACAGT
GAGAAACACAGTAGACACAGGAAGAACAGTTGTTTGCACCATCCATCAAC
CAAGCATAGACATTTTCGAAGCTTTCGATGAGGTTAAAATTGTTACTACA
ATAATGGCTATTCATTAGTTCTTATTCACTTAATTATGTTGATATTGAAT
ATTGATAATGGGTTTCCTTAGTTATTACTGATGAAACAAGGAGGGCTGGA
GCTGTATGTTGGACCAGTGGGACGGCATTCTTGCGAGCTAATTAAGTACT
TTGAGGTGAGAATACGGATACGAAAAGCTATGCAATTAATTTTTCCAATA
ATTTAATTAAGTTCTGAAACATGATCATTCTTGTAAAAAGGAAATAGAAG
GAATAAGTAAAATCAGTGAGGGATATAATCCAGCCACCTGGATGTTGGAA
ATCACTAGTCCTAAGCAAGAAATGATTCTTGGGATTGATTTCACTGAAGT
GTATAAGAATTCGGATCTGTACAGGTTAGTTAAACTTTATCATTTCCATC
TAAATATTATAACATCGGTTTTAGCCACATCTTTACAGGTTAGCAAATCT
ATTTTGGCCATCTATATATTATAACATGGCCAAAACGAATGATTTTTATC
TAGTAATTTCAGAAGCAAGTTTTCTTTTTCTTTGATAATTATGCAGGAGA
AACAAAGCTTTAATTACTGAATTAAGTACCCCTCGTCCGGGGTCAAGGGA
TTTAACTTTCTCTACTCAGTATGCTCAATCATTCCTTAGCCAGTTTGTAG
CTTGTCTGTGGAAACAGAGAGCATCATACTGGCGGAATCCTTCCTACACT
GCAGTCAGATTTCTCTTCACAACCTTCATAGCATTGATGTTTGGGACGAT
GTTCTGGGATCTTGGTACCAAGGGGTAATATTACTTTGATTCCTAGCTCT
ATTCCATGTTCCAACATTCATGTTACTATCATCTCTTAGTCCATCTAATA
TCTATATCATAAACACAGGAAAACTAGGCAAGATCTCTTCAATGCAATGG
GATCTATGTATACTGCGGTTATCTTTATTGGAATCCAAAATGCTTCATCG
GTGCAGCCAGTAGTGGCTGTCGAACGGACAGTGTTTTACAGAGAGAGAGC
TGCTGGAATGTACTCGTCTTTGGCATATGCATTAGCTCAGGTAAACAGTT
TATTGATTCTATATCTGAAGTCATTGTTCTTGGACTGTTTCCCATCTTGC
CTGTTTTAACAAGAGTTGTTTTTTTTACTTGTAAAGCTTATTAAACTTCA
AAACTGATACAAATTTTCATTACACTGAGCTGCTTTCAATCTGCACTTTC
TAGGTTCTGGTAGAAATACCATACATTTTTGTGCAAACTGTGGTATATGG
TGCTATTGTATACTCAATGATCGCATTTGAGTGGACAGCTGCAAAATTCC
TATGGTACTTGTTCTTCATGTTTGCCACTTTATTGTACTTCACCTATTAT
GGCATGATGACCGTGGCTCTGACTCCCAACCCAAGCATCGCTGCTATTAT
AGCCGGTGCTTTTTACGGACTATGGAATTTATTTTCCGGATTTATCATCC
CCAGAACTGTAAGTCGTTTAAATCCCATTTTTATTCAATTTATGATTACA
ACAATATCAACGATTTCATGCCATTTTCCTTTTATTTGGTAAAACAGAGG
ATGCCAATATGGTGGAGATGGTATTACTGGGCCTGCCCTGTCTCGTGGAC
ACTGTATGGAATGCTGGCTTCTCAGTTTGGAGACGTGCAGGATGTGCTGG
TTGATGCAAATATCAGTGTCGCAGAATTTCTGGAAACATTCTTTGGATTT
CACCACGACTTTGTTGGAGTTGTCGCAGCTGTCGTCTCTGGTTTTGCACT
TCTTTTTGCTTTCATTTTCGCGTATTCCATCAGAGTACTGAACTTCCAAA
ATCGATAGTCGTTACTCACCTGACTGAGTTTAGGCAAAGTATGACAACCT
CTTACATGGATATAGTTCAGATCAAGTTTTGGTTACGAAATTCGCATTCT
TTTTTTACATTTCAGAAACATCATTCATGTCTCAGAGCTCAAGTCCTTGT
AGACAATATTGTCTTCCTACATAAATATTTGCATGAAGTTCATTTGATAA
TCACAACATTAGACATTCTGGTATAAATTTTTTGTTCTGAAATGTAATCA
GATATCGAAATTTTTTGTTCAAGTTTTGCATTCTGAAATATAATTTCTGC
CTACTTTGATAATCGCGTCTGATTTGAGATGTCATTTCAAATATCATTTA
TGTCGAAAAAAAATCATTTCGGTTATCATCACGACTTTTTTAGAGTCGAG
GCATTGTTGGTTCTGGTTATGCACTTCTACAGTTCTACTGATGTGGCTGG
ATAATAATTATAATTTCCCGGAAGGCGTGTATAATTTAATTTAATCAGGA
CCAGAATTAAAATGTTGAATTGAAAGTCAACTATTTGACTCCACCTCATC
ACTGGCGTCATGCATAATAAAAAATCAAATTTTAATCCTAATTAGGCTCT
TAACTGTGATTAGCTTACTACGTGATTTGGTAACGTGTCAGCCGGTACAT
AATAAATAATTAAAAGGAAAGCTCAGCAAATCTCCATTATATATTGGCGT
TCCCGAAGGTAATAGTTAACGATATTTCTGATTCTCTCAACCGATTTGAT
CTTTAATTAAAAATAAAAAAATTTCGTATATTATTCAAAAAATATACGAA
ATAAGATAATTAATTAGTTTTTTTTTGAAACAATGATAATTAATTAGTTA
GTTGATCTTCAAATATGATAATTTCAAATAAATATATTATTCATATAATA
TTTGCAAACAGTTATATCTATCTCATCATATAAATCATCAAGTAATAAAT
AAAATAACAACTAACCTAGTTTAGAGAATTAAATTCTATAAATCAATAAC
AAGGAGACTAAAAAATTTGTAGTATCATAAAATAAAATTCCATATATTAA
AGGTATCAAAAAGAGTAGATTTATAATAAGAATAACCAAATAACTAAATA
AAAAATAGTATCTTAAAATTTTAATAAATTTAAAAAAATGACCCCGTGAG
CTGGAAATTGAGTTTCTTAGCAAAATAATAATCAAAGCTGAGTCAGAATA
GATTTTCTTTCGCTATAAGTTTAACTCGTTCCACTCATATACAGTAAATA
AAAGTCCACTTTATTTGAAAATCACAAAATAAATTTAGACTCCGTATAAA
ATAAAATGCACACCGCATTGCTGACATATGCGGTCACTGGAATGTGTTGA
CTGAATCTCAGATGAAACTAATTATCCACTCTTTTTGTGGAAATTAGAAA
AGTGAATTTATATCGGAACCGTGTGGTACAGGTTGCCTTTTCCAGATTCG
ATAGAAACAGTTATCTCGTGTATACCGGTATTAATCTTTATCTTTATTTT
TAGAGTTTTGGTACCTAACAATTGATTGTCTCCATTTCCATTGTTTCAAG
AGTCAGGAAACTTGTTTTTTTAGTATCTGCAGAAAATTATAACAAATACT
TAAAAAAAATGAAATTTTAATTTTAATCTGGACTCTTGAAATATAGATCC
GACACCATTGGAAGCGTGTAATAACCTGTTCCCGACAACCAGGGACCAGG
ACCCTTATTTTTATTATCATGTTCATTTTTGTTACATAATTCATATTCTT
TAGTATACTATCTTAAAATATATGTGATATAATATGAGTAATTTTAAATA
GAGATAATATATGATCAATGATATTCAAATTTTATATAATATTTAATGGA
TGCAGAAAATAAAATAAAACTATAAATTTAAATATTAACACATAAATTTG
AATCCCAATGAGTATACTTATTAATCATGAACAAAGCATCTCATAATTTA
TCATATGCATGAATAAGAGAAAGATATTCGAAAATGAGATTATATAAATT
TTGTTTCTTCTCTAAACGTGTTAATTCCTAAAATACAATTTATTATGTCT
AGATTCATTATACAGCCAGAAGAATTTTCAATGAGATTGGTTGAGTTGAA
TATTCAGATATTTATAATAATGCATATCACGAGGAAATATATTGATTAAT
ATTAAAATGAAAAAAATACAGTATGCAGCAACAGTAACGTTCACATCGGG
CTACAGCTTGTCAAACCACATGCAACTTGTATTATTTACCGTTGACCAAT
TGGCAACATGATTGCATTAACGCTAATGACAGATTATATAATATACATAA
ATAATAATAATAGTAATAAAATAATAGATGATTAAGATACTTTAATACAT
ATCTCAAGGTGTTAATTTGTATCACAGCAGCCACGATCCCCGCGATTCAT
ATTAGGAACACATAATAAAATAGGATTAATTATATAATATCTAATACCGG
AGAAAATTATATAATCTATTATAATGGTGAGATATATGTACAAGGTTGAT
TTTCAAAAACGGCGTTCAATCAAGGATTAAGAAGATGTGTGAACAGGACT
TGCAAGCAGCTTAACTTATAAGTAACTTACTAACAGTAAAATGCATTTAT
TTTTTGATTTAAAATCAGCTTTTAAGACGATGGTACTTGGAAGTTAGAGT
TTTTTTATCATTTTAAAAATAAATCAGAAACAGACTTAAATTTAGAACTA
AACAAGATTTAAATCGAAAAATTAGTTTGAGATATTTTATCCGATGACTA
TGCCCAACCCCTCCTGGTCACATTCTTTCATGCATAAATAGGGAAGTGGC
ATTAAATTTTATAGCAAAAAAACATCTCTAGCTAGCTTCTCAACTGCTAT
GATGTGCTGCATGCAATTTGCTCTGTATCTTCATGGCTTGACTTCTCATA
GCTCTTAACACCAACCAATTTAACAAAAGGGTACAAGATATATCTGGATT
GAGTTAGCTTGCTGCTACAAAAAATGGAGGCTAGTAATGTTCTGCGAAAA
AGTGGAAGAAGTTCCAGGGAAAAAATGGGTAGTTTCAGGGGAAGTCTGAG
GGCAACAAGTTCTTCAATGTGGAGAGATCAAGGAATGGATGTGTTTTCGA
AGTCGATACGAGATGAGGATGATGAAGAGGCTCTGAAATGGGCTTCTCTG
GAGAAGCTTCCTACTTTTGATAGGCTGAAGAAAGGGTTGCTTCTTGGATC
AGAAAGTGCTGGTGGTACTATTGATGAGGTTGATATCGAAAATCTTGGAG
TCAACCAGAGGAGGGCCTTGCTGGAGAGGCTTGTGAAGATTGCTGATGAA
GATAATGAGAAGTTCTTGTTAAGGCTCAGAGATCGGATCGATAGGTAATT
TTTTTATTTTTTTATTAGTATATTAACATTTTACTGTTTTTCGTGGTTGT
AACATCCTACATCGATAAGAATTAGTATGTCCTGAGCCTACTGACCCGAA
AACAAATGATGTAGCAGTAGCATATCTTTGATAGTTATTAAGAAGTGAAA
TTTGTGGTTCTGTTCTTGATTGTGATGGGATTAAATTTACCAGGGTTGGA
GTTCAATTGGCTACAATTGAAGTCAAATTCGAGAATCTGCATGTTGAGGC
AGAAGCTTTTGTGGGTAGCAGAGCTTTGCCTTCTTTCTTCAACTTCAGTC
TTAGTATACTGGAGGTAACACTGCAGACAGACTCATGAATATTCGTCGTC
GTTGCATCATCTGGTCTAGAACATGTATTTGATTCTGTTGATTTTCTTGT
TGGTTTTGACAGGGGCTGCTAAATGCATTCCATATACTACCAAATAACAA
GAAGCAGTACACCATTCTGGATGATATTAGTGGCATCATTAGGCCTTCCA
GGTAGGCTTTACAATTTTTATTTTATTTTTTTTGACTTGCAGAGTTTAAT
TTTTTGAAGGAATTTTATCTGAACACTATTTCTTATGTAATGCTGCAGGA
TGACATTGCTTTTAGGTCCTCCGAGTTCTGGAAAGACTACACTGATGCTT
GCGTTGGCTGGAAAGCTAGATGCCGGCCTTAAGGTTTAGTATCTGCAATT
CTGAATTTTACATATTTTTGAGGAGTCTTGGCTGAAGAGTTTTTATGATA
AATTTTAACACGATTGAAACTCCGTCTGCTCTTACCAGTCTTCGGGGAGG
ATCACATATAACGGCCATGACATGAAGGAGTTTGTTCCCCAAAGAACATC
GGCCTATATTAGCCAAAATGATCTCCACATAGCAGAAATGACTGTGAGGG
AAACATTGGCTTTCTCTGCAAGGGTCCAGGGGGTTGGATCAAACTATGGT
TAGTAACCGATACTTGTTGTTTCTTTGCTTAGTATATAGACCGCTCTTAG
TCTGCTGTTTGTAATACTTTTGTGTATCCCAGAAATGTTAGCTGAGCTTG
CAAGAAGAGAGAAAGATGCACAGATCAAGCCTGATCCTGATCTCGACATC
TACATGAAGGTAGCCCTATAATTCTGTAGCTGGAGATGTTGTAGTAGATA
TCAGACTCCTTCTTTATACTAAAAGTTGCATATTTGTTTCAATCCCAGGC
AGCTGCAACAGCAGGTCAAGAGGCCAGTGTTGTCACAGATTACGTGATGA
AGGTATAAATTTTTCTACAATTTTTTTTAACACTCTAATCCGGAGAACAA
TAGCTTGATAGTATATGAAACTATTGCTTTGTACTTAATTGCAGGTACTG
GGACTTGATGTCTGCGCGGACACTCTGGTTGGAAACCAGATGCTTAGGGG
GATTTCTGGTGGACAAAAGAAGCGAGTTACAACAGGTTAAACAGACATAA
GACTTGATTAACATTATGCAATCAAGTAGATTAATGCTAAGCTATATGTA
AGCTAATAATTATGATTTAATTACAGGTGAGATGTTGGTTGGACCATCCA
GAGCACTTTTTATGGATGAAATATCTACTGGTTTGGACAGTTCTACGACG
TATCAGATTGTTAAGGCACTCAGGCACAGTGTGCACATTCTGCAAGGAAC
CGCTTTCATATCACTTCTGCAGCCAGCTCCTGAGACTTTTGAGCTGTTCG
ACGACATTTTTCTCCTATCTGATGGCCACATAGTGTATCAGGGACCCCGT
GAACATGTGGTTGAGTTTTTCGAGTCCATGGGATTTAAATGTCCCCCAAG
GAAAGGTGTTGCTGATTTCTTGCAAGAAGTGAGTTATATATCTACTATCA
TTTCCTTAATTTTTTTTGCTTACTTGCAACTTAAAATTGGAAAAAAAGAA
GAAAAAGAAGCCTCATATGTTGACATATAATTGGGGTGCAGGTGACATCA
AAGAAAGATCAGAGACAGTACTGGGTACACAGGAATGAGCCTTACAGATT
TATCACAGCTAGAGAATTCTCCGAGGCATTCCAGTCATTCCACGTTGGAC
AACGACTTGGAACTGATCTAGCAACAACATTTGACAAAACCAAAAGCCAT
CCAGCTGCTTTGACAACCGATAAGTATGGTGTCAACAAGACAGAACTCTT
GAAAGCACTGACTGCAAGAGAACTTCTGCTAATAAAGAGAAACTCATTCA
TCTACATATTTAAGATTGTCCAAGTGAGTTATTTCTATATACATCATTCG
TCGTGTTTGATTGTTTTTTATGCCTAGTGATTAACGACATGAACTTGTTA
TCTTTTTCAGCTTGTGATTATGTCCTCCATAGTTATGACATTGTTCTTAA
GAACCGAGTTGAACCAAGACACGACGACTGAAGGAGGGGTGTACATGGGT
GCTTTGTTCTTTTCTGTGCTTATGCTAATCTTTAATGGTTTATCAGAGCT
TGCCATGACAATAGCAAAGCTTCCGGTCTTCTATAAGCACCGAGACCTTC
TCTTTTTTCCCACATGGTCATATATTCTCCCAACATGGATCGTCAAGATA
CCTCTTTCTTTTGTTGAGGTTGCCATTTGGGTAGGCCTCAATTATTTTGT
CATCGGATATGATCCAAATGCTGCAAGGTGAGAACAATTTCATCAATATA
CTTATCACGGATTTATTTGCAAATTCTGTAGTGTTTTTGTGCCTAATGAA
AAATGACCTTATTGCAGATTTTTCAAGCAATACCTGATACTCATACTAGT
GAACCAAATGGCAGGAGCATTGTTTCGTATGATTGCTGGACTAGGCAGGA
TAATGACTCTCGCGATGTCCTTTGGAGGATTTGCAATGCTTATCCTTTTC
ACTTTGGGTGGCTTTGTCCTAGCTAGAGGTACTGCATTTCAGTTGAATGT
CGGTACCATGCTCCTCTAACCTTTTAACGCGTTTACTAACCGAGTTGCTT
ATGATGTGATGATGCAGGGGATGTGCCAGATTGGTGGATATGGGGCTACT
ATTGCTCCCCAATCATGTATGGAATGAATGCCATTACTGTGAATGAATTT
CTCGGTCATCAGTGGAGCAAAGTAAGTTTCGATGCCCTTATGACTTATCC
TATTATGGCTATGCTGCGAAAATAAACTGATCAGAACTCTTTTTCTTGTC
AAAGTTGAATAAAAATACAACTGAGACCGTAGGGGTTGCACTTCTGAAGT
CGCGAGGTTTCTACCCATATTCATACTGGTATTGGATAGGGGCAGGCGCA
TTAGTTGGATTCGTTTGCTTATTCAACTACGGCTACATGTTGGCACTTAT
TTATCTTGATCGTAAGAGTTCTACATTTTTTTAAAATAATTTTATTTCTG
ATTCATGTAGTTAATAAGCAGCTTACTAATATGTACTATACCCTGCAGCT
CTGGGGAAGCCGCAGGCTATTATACCAAAGGACGGTGATGCAACCGAGCT
GGCAGAATCGGCTGCTGAGGATACTCATGAGAAGAAGAAAGGAATGGTTC
TTCCTTTTGAGCCACATTCCATCACATTTGATGACATCAAGTACTCTGTT
GACATGCCACAGGTTTGTAAAAGGCCCGAATTGAATAGTTGTGAATTTGG
ATCCAGATTGAAAATTGTGGAAATCTCAACTGTCTGGATGATTTTTTAGG
AAATGAAAGAACAAGGTATTACTGAGGATAAGCTATTGCTTCTGAAGGGT
GTGAGTGGAGCTTTCAGGCCTGGCGTTCTTACTGCTCTAATGGGCGTCAG
TGGTGCTGGTAAAACAACTCTGATGGATGTGCTGGCTGGTCGAAAGACGG
GTGGATATATTGAGGGCAACATTACTATATCAGGGTATCCGAAGAAGCAG
GAGACTTTTGCGAGGATAGCAGGGTACTGTGAACAGAATGACATCCATTC
GCCTCATGTTACTGTCTACGAGTCCTTGCTCTACTCAGCCTGGTTGCGCT
TGCCTTCAGAAGTTGATACTGAAAAACGAAAGGTTTGTCTGAAACATATA
TCTGAATAAGAGTCTGAATTAAGAACTAACTGTATCATGCCTCAATTTAT
TTTTTTCAAGAAACAAAAGTATAAGGTTTGTCATGTACAGATGTTTGTGG
ATGAAGTCATGGAACTTGTTGAACTGGACAACCTAAAGGATGCGCTGGTA
GGTTTGCCAGGCGTAAATGGCCTTTCAACTGAGCAGCGAAAGAGATTAAC
CATTGCTGTTGAATTGGTTTCAAACCCCTCAATTATATTCATGGATGAGC
CTACTTCGGGGCTGGATGCACGAGCTGCTGCAATTGTGATGAGAACAGTC
AGAAACACTGTGGACACTGGAAGAACCGTGGTTTGCACTATCCATCAACC
AAGCATTGACATTTTCGAAGCTTTTGATGAGGTACAAGACCTTTAAATAC
AACCTACATTTGTGCAATTTCATGTAATTAGTCAGCATTAGACTAAAATA
TTTTTCTTGAATGATCCGCAGCTCTTCCTGATGAAGCGAGGAGGAATGGA
ATTATACGTCGGGCCAGTTGGTCGTGACTCTTGCGAGTTGATCAAGTACT
TTGAGGTGAGAAATGTTACAGTTTGCTCTGAGTCTGATACTTGTTCTGCT
TGTTCATTCCGAATTCTAATACTTGCCTCCATTTTTTAAAAGGACATCGA
CGGAGTAAGTAAAATCCAAGACGGATACAATCCAGCCACCTGGATGCTCG
AAGTCACTGCATCATCTCAAGAAATGATCCTAGGGGTTGATTTCACTGAA
ATCTACCAGAATTCAGATTTGTACAGGTACAAAATTTCACTTTTCCGCCT
CTTCAATAGTGCAAAAAACGCGATACTAATTTATAAACTATGCAGGAGAA
ACAAAGCCCTTATCAAAGAACTTAGTTCACCACGCCCCGGTTCATCAGAC
ATCAGCTTCCCTACTCAGTACTCGCAATCTTTCTTCGTCCAATGCTGGGC
TTGTCTATGGAAACAACGATCCTCATATTGGCGAAACACGTCTTACACTG
CAGTGAGATTTATTTTCACAATTGCTATATCATTAATTTTCGGGACAATG
TTCTGGGACCTCGGTAACAAAATGTAAGTTGTACACAGAGAATTACAAGG
CTCAAAATTGTTAGCCTCGAACAAAATCTGATTCAATATTTTTTATAATT
TGCAGAAATTCTCGGCAAGATCTTTTCAATGCAATGGGCTCAATGTACTC
TGCTTGCCTCTTCCTCGGGTACCAAAATTCCTCCTCCGTGCAGCCAGTGG
TGGCAGTAGAACGAACCGTGTTTTACAGAGAACGAGCTGCTGGAATGTAC
TCCGCCTTGCCATATGCCTTTGCACAGGTAAAATTTCCGCGAAATTTTTA
TTTCCTCATTCCTGATTAAATGAGCTCGTTTGTTTCTGATTAACCGCTAT
ATCTGTCCCTCTCCAGGTCTTAGTAGAAATTCCATACGTCGTGATTCAAG
CCATAGTATACGGTCTCGTTGTCTATTCCATGACAGGCTTGGAATGGACT
GTCGAGAAATTCTTTTGGTACGTGTTCTTCATGTTCTTCACGTTCATGTA
CTTCACCCTCTGCGGTATGATGACCGTGGCCTTGACCCCCAATGTCGAAG
TTGCTACCATCATTGCTGCTGCATTTTACGGACTTTGGAATCTCTTCTCA
GGATTCATCATCGCCCGACCTGTAAGTTCTTGATTATCATACAACGTCAA
TTTCAATCAAAAATATCTTAGTTGCAATATTTTTTTCAAAAATACTGTGC
AACCTCAGTTGCAACTGTTCTAAGTTCTAACCGAAAAATCTAAATACTTT
AAACTAGTTTTGCAACCTCATATGCAATTTTAACCGTATTTTTTGAGAAA
GGATTTCAAAGATTTTTGCACATTTTCAAGGACTTAACATATTTTTTTCA
AAAAAAAAACAAATAAACAGGCTTTTCTCAAAAATACCTAAATTACAAAA
AATAATTCCAAAAATACGACGTTATCTTATATGCAACTTCAGTTACAATT
GTTTTAACCTGAAAATCAGCTACTTTCAACCAGTTTTGCAACCTCACATG
CAACTTTAATCGTACTTTTGTCCCGACATCTAACGTTATGTTTTTGGCCT
TACTGTTCGACAACAGAGCATGCCTGTCTGGTGGAGATGGTTTTCATGGA
TATGTCCACTGGCTTACACGTTGTACGGTCTGATCGCGTCTCAATTCGGG
GACATGAACGACACGTACCTGGAAGATGCGGAGCAAAATGTGCAGCAATT
CGTCGAGGATTATTTCGGGTTCGACAAGGATTATGTGTGGGCAATCGGAC
TAGCCGTCGTCGGATTTACGTTCACTTTCGGGTTCGTGTTCGCGTATTCA
ATCAGGTCGATCAATTTCCAGAGACGGTAG
Sequence Length:
13730
Sequence Checksum:
8fcbbe341af3a53908012bc6820a03a1
View location in JBrowse:
Cds:
>DCAR_026296cds ATGGCCGAGCTGTCTATGACCATAGCAAAGCTTCCTGTCTTTTATAAGCA AAGGGATCTTCTGTTTTTTCCCCCTTGGGCGTATGCACTGCCTTCATGGA TCATCAAAATCCCTATTTCATTTATTGAAGCTTTCATCTGGGTACTTCTT ACTTATTACGTTATTGGGTTAGATCCAAATGCTGGAAGATTGTTTAAACA GTACCTGCTTTTAGTACTCATCAACCAGATGGCTTCGGCATTGTTCCGGA CTATTGCAGCAGCGGGAAGGAGTTTGATTGTTGCAAGCACGTTTGGTTCA TTTGCATTGCTTATACTATTTGCACTTGGGGGCTTCGTGTTGTCACGAGT TAACGTAAAGCAATGGTGGGTATGGGGCTACTGGACATCGCCAATGATGT ATGGGATGAATGCCATTGCAGTGAATGAATTTCTTGGGCACCAGTGGAAT CATGTTCTTCCTAACACTACAGAGCCACTAGGAGTCTTGATCTTGAAATC ACGAGGGTTCTTCCCCTATGGATATTGGTACTGGATAGGAGTTGGGGCAT TGCTTGGATATATATTTCTTTTCAATTTCTCCTTCACCCTGGCTCTGAAT TTTCTTAACCCTCTTGGAAAGCCTCAAGCTATTATACCAGCAGAAAGCTA CAAAGGAAGAACTAAAGAGGGCGTTAATCAGCAGTCATTTAAAGATGGAA GTGATCATATGGCAAAAAATTCACCTCCATTTTTATCTGCTAGAACAGAA GATACTGCGGAGGCTCATAACAAGAGGAAAGGAATGGTTCTACCTTTTGA ACCACACTCAATTACGTTTAACGAAATCAAATATTCTGTAGACATGCCTC AGGAAATGAAAGAGCAAGGTATAAGTGAGGATAAGTTGATGCTCTTAAAA GGTGTGAGTGGTGCTTTCAGGCCCGGTGTTCTTACTGCTTTAATGGGTGT AAGTGGTGCTGGAAAAACAACACTGATGGATGTACTGGCGGGTAGAAAAA CAGGTGGATATATTGACGGTCATATTACAATATCTGGTTATCCAAAGAAA CAAGAAACCTTTGCTCGGATATCTGGATACTGTGAACAGAATGACATTCA CTCACCTCATGTTACTGTCTATGAATCTTTGCTCTACTCAGCGTGGTTGC GACTGCCTATAGAAGTTGATTCGAGGAGTAGAAAGATGTTTGTTGATGAG GTCATGGAACTTGTTGAACTAAACACTTTGAAGGATGCACTTGTTGGCTT GCCAGGTGTAAGCGGACTATCGACCGAGCAGCGCAAGAGACTAACTATTG CAGTTGAGCTGGTGGCAAACCCATCAATAATATTTATGGATGAGCCAACT TCAGGTCTGGATGCAAGAGCTGCTGCTATTGTTATGAGAACAGTGAGAAA CACAGTAGACACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGCA TAGACATTTTCGAAGCTTTCGATGAGTTATTACTGATGAAACAAGGAGGG CTGGAGCTGTATGTTGGACCAGTGGGACGGCATTCTTGCGAGCTAATTAA GTACTTTGAGGAAATAGAAGGAATAAGTAAAATCAGTGAGGGATATAATC CAGCCACCTGGATGTTGGAAATCACTAGTCCTAAGCAAGAAATGATTCTT GGGATTGATTTCACTGAAGTGTATAAGAATTCGGATCTGTACAGGAGAAA CAAAGCTTTAATTACTGAATTAAGTACCCCTCGTCCGGGGTCAAGGGATT TAACTTTCTCTACTCAGTATGCTCAATCATTCCTTAGCCAGTTTGTAGCT TGTCTGTGGAAACAGAGAGCATCATACTGGCGGAATCCTTCCTACACTGC AGTCAGATTTCTCTTCACAACCTTCATAGCATTGATGTTTGGGACGATGT TCTGGGATCTTGGTACCAAGGGGAAAACTAGGCAAGATCTCTTCAATGCA ATGGGATCTATGTATACTGCGGTTATCTTTATTGGAATCCAAAATGCTTC ATCGGTGCAGCCAGTAGTGGCTGTCGAACGGACAGTGTTTTACAGAGAGA GAGCTGCTGGAATGTACTCGTCTTTGGCATATGCATTAGCTCAGAGGATG CCAATATGGTGGAGATGGTATTACTGGGCCTGCCCTGTCTCGTGGACACT GTATGGAATGCTGGCTTCTCAGTTTGGAGACGTGCAGGATGTGCTGGTTG ATGCAAATATCAGTGTCGCAGAATTTCTGGAAACATTCTTTGGATTTCAC CACGACTTTGTTGGAGTTGTCGCAGCTGTCGTCTCTGGTTTTGCACTTCT TTTTGCTTTCATTTTCGCGTATTCCATCAGAGTGACATCAAAGAAAGATC AGAGACAGTACTGGGTACACAGGAATGAGCCTTACAGATTTATCACAGCT AGAGAATTCTCCGAGGCATTCCAGTCATTCCACGTTGGACAACGACTTGG AACTGATCTAGCAACAACATTTGACAAAACCAAAAGCCATCCAGCTGCTT TGACAACCGATAAGTATGGTGTCAACAAGACAGAACTCTTGAAAGCACTG ACTGCAAGAGAACTTCTGCTAATAAAGAGAAACTCATTCATCTACATATT TAAGATTGTCCAACTTGTGATTATGTCCTCCATAGTTATGACATTGTTCT TAAGAACCGAGTTGAACCAAGACACGACGACTGAAGGAGGGGTGTACATG GGTGCTTTGTTCTTTTCTGTGCTTATGCTAATCTTTAATGGTTTATCAGA GCTTGCCATGACAATAGCAAAGCTTCCGGTCTTCTATAAGCACCGAGACC TTCTCTTTTTTCCCACATGGTCATATATTCTCCCAACATGGATCGTCAAG ATACCTCTTTCTTTTGTTGAGGTTGCCATTTGGGTAGGCCTCAATTATTT TGTCATCGGATATGATCCAAATGCTGCAAGATTTTTCAAGCAATACCTGA TACTCATACTAGTGAACCAAATGGCAGGAGCATTGTTTCGTATGATTGCT GGACTAGGCAGGATAATGACTCTCGCGATGTCCTTTGGAGGATTTGCAAT GCTTATCCTTTTCACTTTGGGTGGCTTTGTCCTAGCTAGAGGGGATGTGC CAGATTGGTGGATATGGGGCTACTATTGCTCCCCAATCATGTATGGAATG AATGCCATTACTGTGAATGAATTTCTCGGTCATCAGTGGAGCAAATTGAA TAAAAATACAACTGAGACCGTAGGGGTTGCACTTCTGAAGTCGCGAGGTT TCTACCCATATTCATACTGGTATTGGATAGGGGCAGGCGCATTAGTTGGA TTCGTTTGCTTATTCAACTACGGCTACATGTTGGCACTTATTTATCTTGA TCCTCTGGGGAAGCCGCAGGCTATTATACCAAAGGACGGTGATGCAACCG AGCTGGCAGAATCGGCTGCTGAGGATACTCATGAGAAGAAGAAAGGAATG GTTCTTCCTTTTGAGCCACATTCCATCACATTTGATGACATCAAGTACTC TGTTGACATGCCACAGGAAATGAAAGAACAAGGTATTACTGAGGATAAGC TATTGCTTCTGAAGGGTGTGAGTGGAGCTTTCAGGCCTGGCGTTCTTACT GCTCTAATGGGCGTCAGTGGTGCTGGTAAAACAACTCTGATGGATGTGCT GGCTGGTCGAAAGACGGGTGGATATATTGAGGGCAACATTACTATATCAG GGTATCCGAAGAAGCAGGAGACTTTTGCGAGGATAGCAGGGTACTGTGAA CAGAATGACATCCATTCGCCTCATGTTACTGTCTACGAGTCCTTGCTCTA CTCAGCCTGGTTGCGCTTGCCTTCAGAAGTTGATACTGAAAAACGAAAGA TGTTTGTGGATGAAGTCATGGAACTTGTTGAACTGGACAACCTAAAGGAT GCGCTGGTAGGTTTGCCAGGCGTAAATGGCCTTTCAACTGAGCAGCGAAA GAGATTAACCATTGCTGTTGAATTGGTTTCAAACCCCTCAATTATATTCA TGGATGAGCCTACTTCGGGGCTGGATGCACGAGCTGCTGCAATTGTGATG AGAACAGTCAGAAACACTGTGGACACTGGAAGAACCGTGGTTTGCACTAT CCATCAACCAAGCATTGACATTTTCGAAGCTTTTGATGAGCTCTTCCTGA TGAAGCGAGGAGGAATGGAATTATACGTCGGGCCAGTTGGTCGTGACTCT TGCGAGTTGATCAAGTACTTTGAGGACATCGACGGAGTAAGTAAAATCCA AGACGGATACAATCCAGCCACCTGGATGCTCGAAGTCACTGCATCATCTC AAGAAATGATCCTAGGGGTTGATTTCACTGAAATCTACCAGAATTCAGAT TTGTACAGGAGAAACAAAGCCCTTATCAAAGAACTTAGTTCACCACGCCC CGGTTCATCAGACATCAGCTTCCCTACTCAGTACTCGCAATCTTTCTTCG TCCAATGCTGGGCTTGTCTATGGAAACAACGATCCTCATATTGGCGAAAC ACGTCTTACACTGCAAGCATGCCTGTCTGGTGGAGATGGTTTTCATGGAT ATGTCCACTGGCTTACACGTTGTACGGTCTGATCGCGTCTCAATTCGGGG ACATGAACGACACGTACCTGGAAGATGCGGAGCAAAATGTGCAGCAATTC GTCGAGGATTATTTCGGGTTCGACAAGGATTATGTGTGGGCAATCGGACT AGCCGTCGTCGGATTTACGTTCACTTTCGGGTTCGTGTTCGCGTATTCAA TCAGGTCGATCAATTTCCAGAGACGGTAG
Pep:
>DCAR_026296pep MAELSMTIAKLPVFYKQRDLLFFPPWAYALPSWIIKIPISFIEAFIWVLL TYYVIGLDPNAGRLFKQYLLLVLINQMASALFRTIAAAGRSLIVASTFGS FALLILFALGGFVLSRVNVKQWWVWGYWTSPMMYGMNAIAVNEFLGHQWN HVLPNTTEPLGVLILKSRGFFPYGYWYWIGVGALLGYIFLFNFSFTLALN FLNPLGKPQAIIPAESYKGRTKEGVNQQSFKDGSDHMAKNSPPFLSARTE DTAEAHNKRKGMVLPFEPHSITFNEIKYSVDMPQEMKEQGISEDKLMLLK GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGHITISGYPKK QETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPIEVDSRSRKMFVDE VMELVELNTLKDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKQGG LELYVGPVGRHSCELIKYFEEIEGISKISEGYNPATWMLEITSPKQEMIL GIDFTEVYKNSDLYRRNKALITELSTPRPGSRDLTFSTQYAQSFLSQFVA CLWKQRASYWRNPSYTAVRFLFTTFIALMFGTMFWDLGTKGKTRQDLFNA MGSMYTAVIFIGIQNASSVQPVVAVERTVFYRERAAGMYSSLAYALAQRM PIWWRWYYWACPVSWTLYGMLASQFGDVQDVLVDANISVAEFLETFFGFH HDFVGVVAAVVSGFALLFAFIFAYSIRVTSKKDQRQYWVHRNEPYRFITA REFSEAFQSFHVGQRLGTDLATTFDKTKSHPAALTTDKYGVNKTELLKAL TARELLLIKRNSFIYIFKIVQLVIMSSIVMTLFLRTELNQDTTTEGGVYM GALFFSVLMLIFNGLSELAMTIAKLPVFYKHRDLLFFPTWSYILPTWIVK IPLSFVEVAIWVGLNYFVIGYDPNAARFFKQYLILILVNQMAGALFRMIA GLGRIMTLAMSFGGFAMLILFTLGGFVLARGDVPDWWIWGYYCSPIMYGM NAITVNEFLGHQWSKLNKNTTETVGVALLKSRGFYPYSYWYWIGAGALVG FVCLFNYGYMLALIYLDPLGKPQAIIPKDGDATELAESAAEDTHEKKKGM VLPFEPHSITFDDIKYSVDMPQEMKEQGITEDKLLLLKGVSGAFRPGVLT ALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCE QNDIHSPHVTVYESLLYSAWLRLPSEVDTEKRKMFVDEVMELVELDNLKD ALVGLPGVNGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVM RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGMELYVGPVGRDS CELIKYFEDIDGVSKIQDGYNPATWMLEVTASSQEMILGVDFTEIYQNSD LYRRNKALIKELSSPRPGSSDISFPTQYSQSFFVQCWACLWKQRSSYWRN TSYTASMPVWWRWFSWICPLAYTLYGLIASQFGDMNDTYLEDAEQNVQQF VEDYFGFDKDYVWAIGLAVVGFTFTFGFVFAYSIRSINFQRR*