Resource Type:
Gene
Organism:
Name:
DCAR_028357
Identifier:
DCAR_028357.gene
Locus Tag:
DCAR_028357
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_028357, is a part of gene, DCAR_028357. |
| The genetic_marker, MK009812 8_12861957, is located in gene, DCAR_028357. |
| The genetic_marker, MK009810 8_12862116, is located in gene, DCAR_028357. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_028357 | DCAR_028357.mRNA | mRNA | DCARv2_Chr8:12847521..12862175 |
Sequence:
ATGCTGCTAGCACCCCTCCATATCCACCACCCAACTCAATTTCATCATCA
TCCTCGCCGGCGTTCAATCCCCACCGTCCATCCATCCCGTTCATTTGTAG
TGTTTAGAACTTTTCAGAATTTCCGAGTGTTCAAATGTACAACCACTGAT
GATGCTGCTACTAGTAGTAGTAGTAGTGAGGTGAAAAGGGCCTATCCGTT
TGATGAAATAGAAGCCAAGTGGCAGCTTTTCTGGGAGGAGAATCGTACTT
TCAGAACCCCTGATGGGGATGACTTGGATACTTCTAAGCCCAAGTTCTAT
GTTCTTGATATGTTTCCTTATCCCAGGTCAATTCTTTCATTTTTATCAAT
TTTCAACACTATTGTACTATCATAACCGCCTTTTATATGCTATATTATCT
GTTAGAATCTCTCTCCCTCCCTCCCTCCCAATCTCTCTCTCTCCCCCTCC
CTCCCTCTATCTCTTTCTCTTTGAAGACGCCCCCCCCCCCCCCCCCCCCC
TCTAGAATGGCTTTCCAGTGTTGCTGTTATAACTTTTTTTTTTTTGAAAA
TGAAGTGTTGCTGTTATAACTTGGAAGTCTATAAGTATCTCAAAACTGGG
ACTTGGTTATGCTTGTTTCATGGCCATGAATAGTTCCTAATCTAATTACT
CATATTTATTTATATATTGTTGAATTAATGATACATTGGGAGAGGATGGT
ATTGCTAGACACCAGTCTTTTAAAATGAACTTGTAAGTTTTCTAAATAGC
CCTTATAGACAGGAGAGTTTACTCTATATTTTGTTCTTCTTTCATTTTCT
TATTTTTTTTGGCTCTTTCAACTGGCCCAAGTGGTTAGTCATAGATCATA
ATATTCTTATAATCAATATGCAGTTGTTAACAGGATAAAATTTGTTCACC
CGACGAGCTCTTACTCTTTTTCATTCCTTGGGCTTGGATTGGCTCACACT
CTCTAGAAGTTGGTGTTTCTTAGCATTCACGAGTCACATTGTCAATTTTT
TTAATCTCAGTAAAAGTGTAAATAAGTATTTTTTTTTGATTATGTTTTTT
GATAATTTATTTCAACATAAGAATGGAGAATAACTGTGTTAGGCTTCATG
GATCACTAGTGTCATCCGGCTACACATACTTCTCTTTTTAATTTATATGA
CTAATGTGACATAATCTGATGGTGAGTCCGATTGATCATTGGTGCAGTGG
GTCTGGACTACATGTTGGTCATCCTCTTGGATACACTGCTACAGATATTC
TTGCTAGATATAAAAGAATGCAGGGTTTCAATGTCTTACACCCTATGGGA
TGGGATGCATTTGGGTTGCCTGCAGAACAATATGCAATCGAGGTTTTTTT
CTCAGCTCTGACAAACTATGGTTAAAATTCCGACTGAACATATACTGGTC
GGTGATGCAATATTTTTTTCCTTCTTAGACAGGAACCCACCCAAAACTTA
CCACATTAAAGAACATTGACCGCTTTCGATTACAGGTAATACCCTGTCCT
TTCCTTCCTCTCCAGACTCCAATGATCTTGTGCTTTTACATATAATCTAG
TGCTTAAAACTTCACTGGTCATATTATATTTCGAGAAACATTTTACATAA
CTATTTGGCCTTTTATGTTCTGATTGTAGGAATTTCTTTTGGTTTACAGC
TTAAATCATTAGGCTTCTCATATGACTGGGATCGTGAAATATCCACTACT
GAACCAGCGTATTATAAATGGACTCAGTGGATTTTCCTCCAGCTTCTAAA
GAAAGGACTGGCATATCAGGTCCAAAATATACTTCTCTCTCTCTCTCTCT
CTCCCCCTCACACACACACACACACATATTTACCCAATGTCCAATATGTA
CCCTTATATATTAATACTTATATATGGTTATAAATATAAATTTAGGCTGA
GGTACCAGTCAATTGGTGCCCTGCACTTGGCACTGTCTTGGCTAATGAAG
AAGTAGTGGATGGTTTGAGTGAGCGTGGGGGTCATCCAGTAATAAGGAAG
GTATGCAGACTATTGCATTATTGTCTGTGCTAGGGTCACGGCATTTTAGT
GATGAATGATTGTGTAATTTGACAGCTTATTATTTTTTGCCAAACAGCCA
ATGAGACAATGGATGCTCAGAATTACAGCATATGCTGAACGTCTTCTTGA
AGATTTAGATGATCTTGAATGGCCTGAAAGTATAAAGGAGATGCAAAGAA
ATTGGATAGGGAAATCAGAAGGCGCAGAGGTGGAGTTCCATGTTCTTGAT
CCTAATGGTCTAGAAAGTGGCAATAAAGTTACTGTCTATACCACTCGGCC
TGATACGATTTTTGGAGTAACGTATTCATTCATTTCATTGTTTCTCTCAT
GCCTTAACTTTTATAGCAATTGTTTATGTTGTAATAGGTGCTATACTCTG
TGCAGATATCTTGTTCTGGCACCTGAACACGACCTGTTGTCATCGATTGT
TCCAGAGTCCCATAGCAAAAATGTATGGTATATTCTTTTATTTGTAGCAT
AGTCTCAGGATTTATACCAAACGGCCTATTAAAAGTGTTATGATCAATAA
CCCAGGTAAAAGAATACAGAGACCTTGCCTCTCGAAAAAGTGACCTGGAG
AGAACCGAGCTTCAGAAAGAAAAAGAAGGAGTATTTACTGGTTGTTATGC
AGTAAATCCATCTAACAAGGAAGCTATCCCGATATGGGTTGCTGACTATG
TTTTGGCTAGGTGTGTTGAGAACTATTTCTCTTTCAAACTCTATGACTTG
GATATAAAATAATAATAATTTTGTGGCAATTATGTACATGACATGACAGT
ATAGGCTAAGAATCAAATTATTACATTTTAAATTAATATCCTATTCAAGA
TTGTTTGGAGATTAGACTACTTCCATGAACATGATTATTAATTGACGATT
GTGTCATGTAGCTATGGTACAGGAGCAATAATGGCAGTTCCTGCACATGA
TACTCGTGATCATGAGTTTGCCTTAAAGTATGATATTCCATTATGTTGGG
TAGTAAAGCCAAATGAAGAAACTAGCACAGATTCTGGAAAACCATATTCA
GGTCATGGTACTTGTGTGAATTCATCAAGCTCAGATTCAGGGCTAGACAT
AAATGGCTTGAATAGCAGAAATGCTGCTAGCAAAGTCATTGATTGGATAG
AGAAAACTGGAAATGGGAACCGAAAGGTAAGCTTGGTAAATTAATATTAT
ATCAGGCTAGTATTTATGTTTTTTCCCTTTTATTTATTTGTTCATGTTCT
TTATAATAATTGGTTTATTATTTGATCATCAAGAAGAATTGTTTCTTGAC
TCCTACCATTTAATGAAAAAAAAGATGTTTGGATAGGTAAATTACAAGTT
GAGAGATTGGCTTTTTGCCCGACAACGTTATTGGGGAGAGCCTATCCCAG
TTGTTTTACTGGATGACACTGGGGAGACTGTTCCCATCCCAGAAACTGAG
CTTCCCCTTACCCTTCCTGAATTGGATGATTTCACTCCTACTGGGACTGG
GGAGCCCCCACTAGCCAAAGCGCTTGCATGGGTATGTTTCTCTCTGTTCA
TATTTTCTATTCTTTCAAGTTCTTCAGTTTCATGTGTAAATTGTTTCCAT
GCCAGGACATCACTATAAGCTATATATATATATATATATACTGATTATTA
TTTCTATTTTGTTGATTTTATCAAACTCACATTACTCCAGGAGGATTTAG
ATTATGGAAGAATGCATTCTTTGATTGACTTATATATTTCCTCATAGCTC
TAGTTCATAACCATTTCCATGTGGAAGTAAACTCATTAGTGATAGGATTA
TAATTTATTAACTCATTCTTATGTATGCTTTTTGATGGATATGTAGGTTA
AAACCAAAGATCCCTTGTCCGGGAAGCCTGCAAAACGTGAAACTAATACC
ATGCCACAGTGGGCTGGCTCTTGCTGGTAAATTTCTTTCATGGATTTATT
TCATTTATTATATATATAGTTTTAAGGGGTTAATAGGCAAAAAGATCACT
GAACTCATGGCCAACTTGCAGTTGGGTCATTGAACTCAAAAAGTTTGCAA
ACGAATCACAGAACTAAATTTAAGTTGCAGTCAACTCACTGAACTAATAA
AAACTTGCATTTAGGTCACTGTGCCGTTAAGAATGAGTTGACTTTAACGG
AATCCGTTAAAGATAATAATAAAAAATATAAAAAATTTGAAAAAAATATA
AAAATTCAATTTTCTCAAAAAATTCTGAAAACTTAAAAAAAATCTGAAAA
TTTTGAAGAAACTTTAAAAAATATGGAATGTTTTTAAAAAATATGAAAAA
TGTAAAAACTTCGAAAAAAATCTAAAAATTTTGAAAAAAATTCAAAAATT
CAAAAAAATCTGGAAATTCAAAAAATATACCTAAATTTCTGAAGTTAAAA
AAAATTCAGACTTTTTCCAAATTTCCAGATTTTTTCGAAGTTTTAAATTT
TCAAAATCGAGTTTTTAAAAAAGCGAATTTTTATATTTTTTCAATTTTTA
TTAACGGATTCCGTTAAAATCAACTGATACTTAACGGCACAGTGACCTAA
ATGCAAATTTTTATTAGTTCAGTGAGTTGACTGCAAGTTAAATCCAGTTC
TGTGATCCGTTTGCAAACGTTTTGAGTTCAGTGACCCAATTGCAACTTGA
TCATGAGTTCGGTGATTTTTTTGCCTATTAACCCGTTTTATATATTTGTG
GCTGATGTATATCTAATCATTCACTTAAGCATATCCGTATCAATTATTTA
ATTATCTTTAAGAGCAATAAGTGAAGAATGAATCTAAGATACCGTATATC
GATAGTGCAGCAATCAGTTGGTTGTTAATTCTAGATACAAGAACAGTTGT
ACGTAACGTACTGTATAATCCAATTAAGCTCCCCTCCGGAAACTTGCACT
TTCATACAAAACTTTAACTCCCACTCTTTGGGTAAAATCTAAAATATCCA
TCAAGCCTACAAAAAGAAATTATAACTATACGATCTATATATATATAAAC
AGAACAATGAACATGTGTCATGCATCTCAAAGACTTTTAAAGTTTATACC
TTTATTTCCTTATAAATTGATCCCTACAAAAGTGGTACTGAATACTTATA
CTTTTAAGTTGTGCCAGTAAAACAATCCAGTTTCTGAATTTAAAATGAAC
CACTGGTTTATACATATATAGTTTAGCCTAATGTTGCATGTTAATAAATT
TTTTGTAATAATAATAAAAACTTGTCCTTTTTATAATTCTTAAATTATGT
TGCATTTGAAAGGTTGTTTATCATACCTCATATATTGGTAATTGTTGGGA
GCACAAACAGCCCTAAAGAAATTAACCAGCTCATGACAAGTAGTTTTTTA
ACGTCAGATTCAAGTCGGGAACCAGGGTTTTTATAGCTTTCGATATGAGT
GTGGTTTCCAAACTGTGAAAACAAATAATTTGGTTCAGTTCGGTTTGACC
CTCCAAAACCAACCCATGCTCATCGCCGCACTCTTGGATGGGTACTAAAA
GAAGGAAGGATACTCAGACTTTTAAATTGTTTGGCTCACAACAGATTCGA
CGACTCTTGATATCTTCGCTTCCTGGATACATTCTATTGAATGGAGTCTA
CAACTTTCAGATAGCTGGAGGAAATTGTTATAGATTGAGAGAAATGTTGA
CGATCTTCGATCAATTACCTACAATGGAGGAGAGTATTATAGGAGGGCAG
TTCGCGGGCTTCAACACGGGAAAAATGTTGTGTTTTTTAGGCTAATAAAA
AAAACCATGTTCGTGAGACTAAGTAGAACCTTAATGTATCATCTATATGG
GGTAAGTGCTGGAAGCATGGCAGGGGCTATCTATAGATATGTTAAGGCTA
AGCATTTTTTATTGATTTTGTTGTTGTTTGATCTTTACTGAAAGAAGTTT
AATGTACAGAAAGTCAACAACTGACCTACTGATAGCTCTTGACACCCTCT
GACCCAATCACAATGAAGGATCACCTGTTGACAGTTGTCACAGTTCTTAT
GGAATATCGATGAGAATTCTGACTCATTAAGTTTTAATGAGGTTGCACAT
AATGCATCTAATTTACACTCAATTTTTGCCGATGTTCTGGATGCTTGTGA
TGAGTATGAGAGTGGAGCTTTATGGAGGCAATGCACTGTTTTGAAATAGA
ACAGTATATCTACCACTACTTTTGCCCCAAAATACAAGGAATAAAATAGG
GGGATTGGGGCTTCTTTATGATGGATATAATAATTTTGTTCATATGATGA
GGATGAAGAACATCGGTGCTGGTTTATCGTACTATGGAATCCCCAAGGCA
AACCTCAATCCAGTGCAGCATGAATCGAATGCAATGATGCTTGTGTGATA
TTTAAAATGAACAGTAAATGTTTTAAAAAGTCACTGTACGAAGTTGGCAT
GATGATACAAAAGGTGGGTGATCTTAGAGGTGTTGTGCTGCTGGATGATG
ATGATTTTTTAAGATTTGGTTTTGATATTGAGGACCGAGGATCTAAAAGA
GGAGCTAGGAAACTGATATTGAACATTATATGAAGTTGAATTTTGTAGAT
TGACTTTTGGCTAATAGAGTAGAAAGTTTTGAGTTCATAGGATCTGATGT
ACAAGAAAATGTGACTAGGTCTTTTGCCGGAAAAGGTAAAGTCTCTTCTA
GGAAGAAGGTGGATGGAAGATTGACAAGATCCATGAATTTATCAACTTTT
AGGTGAGTTATTAATATGTGAACTTTGTTAATAAGCCCGGTACGTACATG
ATGAAGAAGAGTTTGCTGTATGGAAGCCCAATCACTTTAAAGGTTCTAAT
GGAATTTAAATAAGAATATACAGCTTCAATGATTTTGCAAAGTGTAGTAG
TTTGAGTAGATTAATAAGTTTATTTACTAATTTCAGTAGATGAGTGGAAT
AATTGATGCAATAATGCATACTTTATGAAACTGGACATTAGTATAGTTGA
TCCTGAAGGGTTTTGTACAGAAAAACACAGCGGAGAATGTGAAAATATAT
CGAAAAACCACAGAAACCATCTGCAGGATCCATCCGAGACATGATATTTA
ATTCGTGGCATAGTGTTTTACCTTTTACGAAACTTTAACAGTCGAGAATA
AGGGAGAGTAAAGAGGTCTGGCTATGCTCGATCACCACATATCCCGCAGC
ATGCGATCTATGCTCTAATTTCTTGTTCACAAGAAATTCCTGAAATTCCT
AATTGTTATCTAATTAAGTCTCACTTGATCATCCAACAACTGAATTTCTG
GTTTTCTATTTTGTAATTTTGAGCTTCTTTTTTTTAATTAATTAGGTCAC
ACTTGATTGATTAATTAATAATTCGTTTATACTCCCTCATTCTAAGGTTC
ACTGTTTGCACGCATTTTGAGGCTCCTATAAAGTATAGTTCCTTAACATT
TAAAAAAAAAATGAATAGAAGTTAAAACGTCAAACTTTTATTCAAGGGAA
AAAATTTTAAAAAAATATTATGGAACTAGACTTTATAGGAGCCTCCAAAT
GCATGCCAAAAAGTAACATAAAGAACCTGCTGGGACAGAGGGAGTAACAT
TTTAAGGTTTTAGGAGAGGTTACTTAATAAGAGGCAGCCTTGTTTATCTT
TTGTAGATTAGAAGTGGGAAATGCTCAGGTGTAGCAAGGACAAGAGGGAG
AGTGTTGAACGAAGATTATTCCATGGATCTATATACATAATTTTTAGCAT
GCGTTTACTTTATTATGTTGCTTGGAAAGCTTGGTCACTGTCTATTGCAG
CTCCTTCCAAGTGTAGTGGAAATTGTTTTAAACAGCCTCGCAGCTAGGAG
GGCACACATATAACCCTAAAAGCTAGTGTGTACAATATAAAATGTTGCTT
AACTAATGAAGTTTGATGGCTATACAAAATGTAAATTGTTACTCCCTTTG
TCCCATTTAATTTTATACATTTCTTTTCAACTGCTAGACACGCATTTCAA
TGCTCTTATAAAATATAGTTCTGTAGCTTATTTTTAAGATTATTTTTTTT
GAATAAAAATTTAACATCCAAACTTTAATTCAGAAAAAGAAAATCTTAAA
AATAAATTACACAACTACACTTTAGAGGGCATTAAATGCGTGCCGCGTCC
CCGTGCCCCAATGTATACTATCCAGGGGGACGGAGGGAGTATATATTCAC
TTGTTTAAAGGCACATGACAGATCAAACTGATTGTATATGCCAAGTCCGT
ATATGGAAATAATGCAAACTATTTCGTACAGGTAGTATTTGAAATTTATC
GAACTTAATATATGGTAATAATTCAGCTGTTTTGTACAGGTACTATTTGA
GATTTATGGACCCTAATAATACTAAAGCATTGGTTGACAAGACAAAGGAA
ATGTGAGATTTTCTTTGCTACACAATCTTCTACATTGTTGTTGATCCCTT
TTTGGTAGCGGTACTGTAGTAATATTTGCAGCCAGTTCTCCATGAAAATG
GTATAAAAGTATAAAACAGCTGTAATTTTGTAAAAGTGTTTGGACCAACA
GATTTTTGCCATTTGCACCATTTAACACAGGTATTGGAGTCCAGTTGATG
TGTATGTTGGTGGCGCTGAACATGCCGTTCTTCACTTACTCTATTCTCGG
TTCTGGCACAAGGTTTGTACTTCAAAATTGACATGAAATTTTGTGGATTA
CAGTAGCTATAATTATGAGCATTGTCAATCTTGATCACTTGAAAGTCTGT
AGAACTGTTTGGTACATCATCCTACTGAGATGTATTAGGATAGTAGCAAA
GCATGACATCATCACTTATGTCAAGCACCCTGAAATCATGGGGTTGTCAA
CTTGTCGCTATTACTGTAGCTGGAAAGGGACCAAGTTTTAGTTTCTACAT
AAGAGACGGTGCCTCCTTGTATTAGTTGGACGCAAGTGGTATACATATAG
ACATGTTTACCCACCCTCTCTTGATCTCATTTTTTGCTGATACTACCTCA
TATAGTCTATAAATGAGTTATGAGGCAGCATGAATAAGGTATGAGAGAGT
TAGTTCCAGTATATGAGACAAAGTTCTCAAGGGAACATCTGCTTATGTCC
TTATTTTCATCCATTAGGCCTCTCAAAGGAAATCCAATCAGTTCAAATTA
CACAGGTGTAGGACATCTAAAATCCATTAAGCGGAAAAAATTGGGATGAC
AGAAGCCTATCCTGGTGTGTAACCTATCCTAGTATCCTTCCACTGTTTTC
AGGCCAAGTTCCTTCAAGCACTTGCGGTTGTCTCTTACCGCCAATTCCAT
CCATGGCTTCGCCCTTTAATTCAATTAGAGTTGATTTTTTGAGCCCGTGG
CAATGAAATCAGCTTACAGTTCCCATTAGGGTATATATCAATATACCGCG
ATTTTGAGATTTTGACCCAAGATATGAGGGCTGCATTGCTGCCGTTTTTT
GTGGAAGGCGAAGTTAAAAGTTGATACTCATGTAGACGAGTTCATCCATA
TTGCTCCTGTTTAGTTCCTGTGGATAGTTGAAGGCATCATGGCTGCATAT
GCAAATGGCTTGCACGATTTTTCTCTTGTTAGATTAACTAAGTTGGCCAT
CAATACTAGTATATTGTGTGGTTGCGAGTTTGAGCCCAGTATTTCTAGAA
TTTCATTATTTAATTGGAATAAATTCTATCCTAACCAAGGTTATGCTCAT
GGGCTCTGGGGATCCACTGTCCTAATCCAACATAGCTAATGGGAAGGCAT
GGAAAGAGATGCTGTAGATTATGGAATGAGGACTAGTAGACATAAATTGT
TGTTAAAAACACGTAAAATGTGCAATTAAATGATTTTATACTTAAGTGCT
GTCTAACTGGTGATTTTTATTTGTTTTGGATTCTTCATAAACTCATTGTA
GTAAAATTGATGAACTCAAGCCATCGGTCCCCCTATCTAAATTATAAACA
CACGTATCTAAAAAAATTGGGAGTTAATAATTATAACATAAAGTTGTATC
CTTATGCCCTATGATAAATTAATAATAACCTTCTCTCTCTCTTTTTTTTT
CTTTTGTGACTTTGTCTATTTATACGTCTTTTTGAATCAGGTTCTTTATG
ACATTGGTGCTGTATCAACTAAAGAACCTTTTAAATGTGTAATAAATCAG
GGGATAATCCTGGGGGAAGTAAGTTTACTTCTCAGTAATCTCCATTACTC
CATATTAGGTTTATCCGTTCAAGTGTTTAATGTTGTGAGTGGCAGGGNCC
ATATTAGGTTTATCCGTTCAAGTGTTTAATGTTGTGAGTGGCAGGTTCAA
TATATGGCATGCAGAGACTCAGATGGGAATTTAGTTTCTGCAGACTCTGT
TGACGTGTTGAAAGACTATAGCCAAGAGAAAGTACCTGAGGATAATGTAT
GCTTTCTAGTTGCATGCTTTACGTAATCACATGCTATCTTCATATTTAAC
TAATGTCCTACACTTTTCTGTCCTTTGGTCTTCTCTAACAAATAGTATAT
AACAATGTAGGTCACCAAGTCAGGGGTTCATTTTGTACTAAAAGACAATA
GAAATATTCGCTTGATTGCCCGGGCACACAAAATGAGTAAAAGTAGAGGA
AATGTTGTAAACCCTGACGATGTTGTTGCTGAATATGGTGCTGATTCTCT
CAGGTTATATGAAATGTTCATGGGACCATTGAGGTAGATTAATCTTGATG
AACAGTACAAAATTTCTCTCTCATGCAAATTAGCTTTATCTTCTTCTTTT
GGTTATATTCACCTTTCTTACTACCTCTTGGCTATAATGTCTGTTCTCAT
TATTTTCACCTGTAGAGACTCCAAGACATGGAATACTAGTGGCATTGATG
GAGTTTATCGATTTTTAGGGAGATCCTGGAGGTTAATAGTTGGTTCAGCG
TTACCTAATGGTATGTTTGAAGATGGGACAATAGTAACTGATGATCAACC
TTCTCTGGAACAACTGCGACCGCTCCATAAATGTATTAATAAGGTAATGG
CAATTGATAGATTTATAAGCTCTTGTCGTATATTACATTATTGTCTGTGT
AAGAGTTTGATTTAGCATCGTAAATAATAAAATGCAGCCTTTTATTATTA
TGTTTATTGTTGTTATGAGATGCAATGTGATGTCTATGACTTATTTAGCA
AGTTGACTTGTTTCTTATGAATATCAAGAAGACATTTGTGTGGCTTTTCA
GCACTAACAGATTTAAAGCTTCATTACATGTATAATGCATCCGCTGCTAG
ACATTTCGAATTTATTATAATTTAAAGTATTTCGACATATATGTTTAGGT
GACTGAAGAAATTGAAGGAACGCGATTCAACACGGGAATATCTGCGATGA
TGGAGTTCCTTAATGTTGCGAATAAGGTCTCTATTTATTTGTATACACAC
ACAATCACATGTGCATGCATATCCCTTTCTTGATGGCCTTCTGCTGAAGT
TTCTCTAGTTTATTTTATTCATTTATTACATACAACAATTCTGTTCCATT
TATCTAATAACTGTCACAACTTACAAGTTAGTGGTGTCGTAATATTATGC
ATTTGCCACATTCACGCTTACTGTCACTATAACAGAAAAGAGAAGGCATG
TAAAGGCTAAATACACAAATACGCATGCATGCACTGCATCATAATTTTGC
TCAATTAGCTGATCCGATGGATTGTATAATTTTTGATGTGTTCAGATGTT
AATCGAGTAACAAGTTTCAGTTGCAGTATACAGTATGTTTATTATTCCAT
TAACTGTACAATTTTCTTTTTAATAGTGGGATAAACTTCCACGATCAATT
GCGGAAGATTTCGTTTTATTACTTGCACCATATGCACCACACATATCCGA
GGAGCTCTGGTGTCGTCTCGGGCACCCAGATTCATTGGGCTATGAGCCTT
TCCCTAAGGTATAGATCTTGTACTCCAGTGATAATCTTTTGTAACTCATC
AGACTTTCAAATGTCCCCGAACAACATAAATCCCTTCGCCAGTTTTATGA
ACGTACATGTTAAGTAATATGTTCCCGTGTGATGTCGTTCAATAATCAAT
GTTTAATGTGCTCCTCTAGGGTGCTTGGCTTTAAGTACAAGGGATCAAGT
GGACGTATAAATTTATTTAGACTTGCTAGCTTATAACCCGTGCCATGGCA
TGGATATGTTTTAAAAATATATGTTTATTTTAATTATTCGTATGATGTTC
GGATTTTTTATATTGATATATTTGTGGGGGTGTGTGTGTGTATAATATAA
ATAATATAATATGATATAGTATAATATAATATATTATTACTTAATTTAGT
TTATGAATTATCTTACTAATACTTTATACACTGATTTATACATGATTAAA
GTCAAGATTTTCACTTCAGTGAAATTTAAAAAATTTTAACGATAATTTAA
CAATTATATTTCAATTAGAACATAAAATTAAGAAGCAGAAAAGATATTTA
TGAATTATATAATAAGAATTGTATTCTATTTACAAAACCTCCTTTTATTT
GGTTTAGAACATGAAAAGAATAGAAGTCGAATTAATTACAAAACCCAATT
TTTTTTTATTTTTACAAAACCTGCTACTACTTTGTTTAGAACATAAAAAA
GTAGCGTACGTGTTCTACTTACAAAAACTACTTCTATTCAATTAGAACAT
CAAAAGTATAAATTATATTTATGCTCAAATATTACATGTAAATATTTTTT
ATTATTATGTGATTTAACCGTTTGATAATAAGATCTACATTAACACTTCG
TATTTATTCTGCAATACTATATCAAACAACCAAATTATTAATTTAGCAAT
TATATTTCAATTAGAACAGAAAATATGAAGTTGAAAAATTAGTTATAAAT
TTTATAATAAGAATCGTATTCTATTTACTAAACCTCCTTTCATTTGATTC
AGAACATAAAAAGAATACAAGTCGTATTCCAATGGCAAAACCCACTTATA
TTTGATTTTTACAAAACCTCCCTTATTTTAATTAGAATATAGAAAGGGTA
GGGGACATATTCAACTTACAAAATCTTGTTTTCTTTATTTAGAATATCGA
AAGTATAAATTGTACTTTATATTTAAATATTATATATGAATATCTTTAAT
AACCATGTAATCTTAACGGTTTATCAAGATCTAACGATTAGTATTTATTA
GATAGTACTATACCAAACAACTAAATTATCCTCCTTACACCTATTATATA
GAAGGATATAACTTAAGTGTTTGGTTGGGTGCAAGAGACCAGCCCATAAC
GTATATCAGGAGGCCCAGATCCAAGAGGAAGGATGAATAAAGCCCAATCA
GGGGAGGTGGAAATGAGGGTAGTATAGTAATTCACTAATTGAAGAAAAGT
ATAACAGCAGATAGATAAAAGAATTGAGAGAAGGGAGAGGATTTTTTAAG
AAAATATCTTGTAATCAAAGACTAGGGGTTGTGGGAGATCGTCGCTTCTC
GAATTGTGGCACTACCTTATATCTTGTTCTTATTACATTTTATCAGTCGA
AGTTTGAATCTCTTTGTGTGTTGGAATCCTATTGCAAAACCTAAATATGA
TATCTTAATTATGATATCGAAGTTTGATTCTCTATGCATATGAATGTAAA
GCCTAAATATGAAATCTTAAATACAGGGGTGGTCCAGGCCCCCCCAACAT
TTCAGGACAGGCACAAATTTGTGTATTACTTATGTTGAAAGTTGAACATT
GGTAGATATTATTAGCAACTGGCCAACCCCGAATAAGGTGATAAGTATGA
AAATATCAGGTATCATATAGGTTAAAGTTAATAATTCCTAAGTAATGACA
GAACATATTAGTCAATTAGAGAGAATAAGGCTTAAACCTAGGTAGTTGTA
TCTCCTTCGTAAAGGATTTCCCCATAATGGCCTACTTGTTATATTATACC
AAGTGCCTACTTGTTATATTATACCAAGTAATAGTATTTTGAAATTTGAA
CCATCTAATTCATCCTTAAACTTGACAAGCATTCATTTTCTTTATATAAG
TTAATAGTTCAGATTTGTAGGTTCTTATGTTTTAGAAATTTTCACGACAA
TACTAATAATATTCCTGAGAAAGAAGTATAATTGTTATTTCTTTTAGAAA
AACATATAGTTTCAATTTAAATATTGCATAAAATATTATAATATTTATCT
ACATGTGACCTTTTGGTCCCCCCTTTTGTGTATAAATTCTGCGTCTGCCC
CTGCTTAAATAGTTGATCTTTGTTATGTTACCCCAGTGTACCTGTATAAT
GTCTGCACAGTTGTGGAGTATTATTGTTATTGAATTTCATTTGTGTGGGG
TTTGTAGAGGAGAGCTATTATATGTACAATGTGGATTTGAGTTTATATTA
ATTATTATTAAAAGAGCTATTATAAGCTCCCCTCTATAGTCTATTCTGCA
CCGAGAAATATAATTTTTTTTTTCTGAGTATGGTGTCTACGTATTTGTGG
TCTAATAACAGGCGAATCCTGCATACCTGAAGGAAGCTACAATTACGCTC
CCAGTACAGATCAATGGGAAGACAAGAGGTACTATAGAGGTTGAAGAAGC
ATGTACAGAGGAGGATGCTTTAAAACTTGCTGCACTTAATCCAAAACTAT
CAAAGTATTTAGATGGAAAGATAATCAAAAAGATCATATACGTCCCTAGT
AGAATTCTGAATGTTATTTTAAACCGAGAAAATGTCAAAGTGGGAGTTCG
GTAG
Sequence Length:
14654
Sequence Checksum:
fc9df5ba7ef9917497cc95b561a1437d
View location in JBrowse:
Cds:
>DCAR_028357cds ATGCTGCTAGCACCCCTCCATATCCACCACCCAACTCAATTTCATCATCA TCCTCGCCGGCGTTCAATCCCCACCGTCCATCCATCCCGTTCATTTGTAG TGTTTAGAACTTTTCAGAATTTCCGAGTGTTCAAATGTACAACCACTGAT GATGCTGCTACTAGTAGTAGTAGTAGTGAGGTGAAAAGGGCCTATCCGTT TGATGAAATAGAAGCCAAGTGGCAGCTTTTCTGGGAGGAGAATCGTACTT TCAGAACCCCTGATGGGGATGACTTGGATACTTCTAAGCCCAAGTTCTAT GTTCTTGATATGTTTCCTTATCCCAGTGGGTCTGGACTACATGTTGGTCA TCCTCTTGGATACACTGCTACAGATATTCTTGCTAGATATAAAAGAATGC AGGGTTTCAATGTCTTACACCCTATGGGATGGGATGCATTTGGGTTGCCT GCAGAACAATATGCAATCGAGACAGGAACCCACCCAAAACTTACCACATT AAAGAACATTGACCGCTTTCGATTACAGCTTAAATCATTAGGCTTCTCAT ATGACTGGGATCGTGAAATATCCACTACTGAACCAGCGTATTATAAATGG ACTCAGTGGATTTTCCTCCAGCTTCTAAAGAAAGGACTGGCATATCAGGC TGAGGTACCAGTCAATTGGTGCCCTGCACTTGGCACTGTCTTGGCTAATG AAGAAGTAGTGGATGGTTTGAGTGAGCGTGGGGGTCATCCAGTAATAAGG AAGCCAATGAGACAATGGATGCTCAGAATTACAGCATATGCTGAACGTCT TCTTGAAGATTTAGATGATCTTGAATGGCCTGAAAGTATAAAGGAGATGC AAAGAAATTGGATAGGGAAATCAGAAGGCGCAGAGGTGGAGTTCCATGTT CTTGATCCTAATGGTCTAGAAAGTGGCAATAAAGTTACTGTCTATACCAC TCGGCCTGATACGATTTTTGGAGTAACATATCTTGTTCTGGCACCTGAAC ACGACCTGTTGTCATCGATTGTTCCAGAGTCCCATAGCAAAAATGTAAAA GAATACAGAGACCTTGCCTCTCGAAAAAGTGACCTGGAGAGAACCGAGCT TCAGAAAGAAAAAGAAGGAGTATTTACTGGTTGTTATGCAGTAAATCCAT CTAACAAGGAAGCTATCCCGATATGGGTTGCTGACTATGTTTTGGCTAGC TATGGTACAGGAGCAATAATGGCAGTTCCTGCACATGATACTCGTGATCA TGAGTTTGCCTTAAAGTATGATATTCCATTATGTTGGGTAGTAAAGCCAA ATGAAGAAACTAGCACAGATTCTGGAAAACCATATTCAGGTCATGGTACT TGTGTGAATTCATCAAGCTCAGATTCAGGGCTAGACATAAATGGCTTGAA TAGCAGAAATGCTGCTAGCAAAGTCATTGATTGGATAGAGAAAACTGGAA ATGGGAACCGAAAGGTAAATTACAAGTTGAGAGATTGGCTTTTTGCCCGA CAACGTTATTGGGGAGAGCCTATCCCAGTTGTTTTACTGGATGACACTGG GGAGACTGTTCCCATCCCAGAAACTGAGCTTCCCCTTACCCTTCCTGAAT TGGATGATTTCACTCCTACTGGGACTGGGGAGCCCCCACTAGCCAAAGCG CTTGCATGGGTTAAAACCAAAGATCCCTTGTCCGGGAAGCCTGCAAAACG TGAAACTAATACCATGCCACAGTGGGCTGGCTCTTGCTGGATGAAGAACA TCGGTGCTGGTTTATCGTACTATGGAATCCCCAAGGCAAACCTCAATCCA GTGCAGCATGAATCGAATGCAATGATGCTTGTAGTAGAAAGTTTTGAGTT CATAGGATCTGATGTACAAGAAAATGTGACTAGGTCTTTTGCCGGAAAAG GTAAAGTCTCTTCTAGGAAGAAGGTGGATGGAAGATTGACAAGATCCATG AATTTATCAACTTTTAGGTATTGGAGTCCAGTTGATGTGTATGTTGGTGG CGCTGAACATGCCGTTCTTCACTTACTCTATTCTCGGTTCTGGCACAAGG TTCTTTATGACATTGGTGCTGTATCAACTAAAGAACCTTTTAAATGTGTA ATAAATCAGGGGATAATCCTGGGGGAAGTTCAATATATGGCATGCAGAGA CTCAGATGGGAATTTAGTTTCTGCAGACTCTGTTGACGTGTTGAAAGACT ATAGCCAAGAGAAAGTACCTGAGGATAATGTCACCAAGTCAGGGGTTCAT TTTGTACTAAAAGACAATAGAAATATTCGCTTGATTGCCCGGGCACACAA AATGAGTAAAAGTAGAGGAAATGTTGTAAACCCTGACGATGTTGTTGCTG AATATGGTGCTGATTCTCTCAGGTTATATGAAATGTTCATGGGACCATTG AGAGACTCCAAGACATGGAATACTAGTGGCATTGATGGAGTTTATCGATT TTTAGGGAGATCCTGGAGGTTAATAGTTGGTTCAGCGTTACCTAATGGTA TGTTTGAAGATGGGACAATAGTAACTGATGATCAACCTTCTCTGGAACAA CTGCGACCGCTCCATAAATGTATTAATAAGGTGACTGAAGAAATTGAAGG AACGCGATTCAACACGGGAATATCTGCGATGATGGAGTTCCTTAATGTTG CGAATAAGTGGGATAAACTTCCACGATCAATTGCGGAAGATTTCGTTTTA TTACTTGCACCATATGCACCACACATATCCGAGGAGCTCTGGTGTCGTCT CGGGCACCCAGATTCATTGGGCTATGAGCCTTTCCCTAAGGCGAATCCTG CATACCTGAAGGAAGCTACAATTACGCTCCCAGTACAGATCAATGGGAAG ACAAGAGGTACTATAGAGGTTGAAGAAGCATGTACAGAGGAGGATGCTTT AAAACTTGCTGCACTTAATCCAAAACTATCAAAGTATTTAGATGGAAAGA TAATCAAAAAGATCATATACGTCCCTAGTAGAATTCTGAATGTTATTTTA AACCGAGAAAATGTCAAAGTGGGAGTTCGGTAG
Pep:
>DCAR_028357pep MLLAPLHIHHPTQFHHHPRRRSIPTVHPSRSFVVFRTFQNFRVFKCTTTD DAATSSSSSEVKRAYPFDEIEAKWQLFWEENRTFRTPDGDDLDTSKPKFY VLDMFPYPSGSGLHVGHPLGYTATDILARYKRMQGFNVLHPMGWDAFGLP AEQYAIETGTHPKLTTLKNIDRFRLQLKSLGFSYDWDREISTTEPAYYKW TQWIFLQLLKKGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIR KPMRQWMLRITAYAERLLEDLDDLEWPESIKEMQRNWIGKSEGAEVEFHV LDPNGLESGNKVTVYTTRPDTIFGVTYLVLAPEHDLLSSIVPESHSKNVK EYRDLASRKSDLERTELQKEKEGVFTGCYAVNPSNKEAIPIWVADYVLAS YGTGAIMAVPAHDTRDHEFALKYDIPLCWVVKPNEETSTDSGKPYSGHGT CVNSSSSDSGLDINGLNSRNAASKVIDWIEKTGNGNRKVNYKLRDWLFAR QRYWGEPIPVVLLDDTGETVPIPETELPLTLPELDDFTPTGTGEPPLAKA LAWVKTKDPLSGKPAKRETNTMPQWAGSCWMKNIGAGLSYYGIPKANLNP VQHESNAMMLVVESFEFIGSDVQENVTRSFAGKGKVSSRKKVDGRLTRSM NLSTFRYWSPVDVYVGGAEHAVLHLLYSRFWHKVLYDIGAVSTKEPFKCV INQGIILGEVQYMACRDSDGNLVSADSVDVLKDYSQEKVPEDNVTKSGVH FVLKDNRNIRLIARAHKMSKSRGNVVNPDDVVAEYGADSLRLYEMFMGPL RDSKTWNTSGIDGVYRFLGRSWRLIVGSALPNGMFEDGTIVTDDQPSLEQ LRPLHKCINKVTEEIEGTRFNTGISAMMEFLNVANKWDKLPRSIAEDFVL LLAPYAPHISEELWCRLGHPDSLGYEPFPKANPAYLKEATITLPVQINGK TRGTIEVEEACTEEDALKLAALNPKLSKYLDGKIIKKIIYVPSRILNVIL NRENVKVGVR*