Resource Type:
Gene
Organism:
Name:
DCAR_026454
Identifier:
DCAR_026454.gene
Locus Tag:
DCAR_026454
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_026454, is a part of gene, DCAR_026454. |
| The genetic_marker, MK004389 K1833, is located in gene, DCAR_026454. |
| The genetic_marker, MK010989 8_31536078, is located in gene, DCAR_026454. |
| The genetic_marker, MK011454 8_31541176, is located in gene, DCAR_026454. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_026454 | DCAR_026454.mRNA | mRNA | DCARv2_Chr8:31531960..31546744 |
Sequence:
ATGACGAGTGAAGACTGCATGACTGGTGAATATGCAAATAGGAAAGAGAC
TTGCATTTGCGGTAAGTGTTGCAAAATTTTCTATTAACTTTTATGTAAAT
ATATAAAACAATAACGAGGGGTAAATTTTAAAAAATTGCATTGTTACATT
CTCTTCTACATCCGCAATTACTAATATTTTGAAACTGATTGTTTACGAGA
AAGACAAATTCATTTATAGTATGATTCAAGTTGAATTGAATTACTCAAAA
GTTTAGCTGGGATTTGTTTAAAAATATCAGAATCAACTCAAGTCTGCAAA
TGAGTCAAAGTCACACATAATTTTGTTAGAATCTGAACAGTAATATCAAA
CCCAACAACAAAACTTTATTAGAAAAAACTTCTCCATGCTTGGAATTGCG
TTGTGCTCATCATTACGACAAATTATACTCCTCATTCCATTTTAAATATC
CCGTTTGACTTTGAATGGTTAAATTGACTAATTTTTGATTGAGATTTACA
CATATAATTTAAATTTTAAAAGAAAAAAAATTATGTGATTATAAAGTACA
AACAATGTACTATAAAATGTAAATTTTAGTTTTTTAAAACAATAACAAAT
TTATTTTTTATACTTGATCAAAAATTAGTCAATTTGAACGTTGAAAGTCA
AAACAGTACAATTAAAATGGGATGGAGGGAGTGATTATACTCGGAAAAAA
CATTACTCAAAATCTTATAATAAATTTATCAATTTACAAACATCAATAAA
TAATAATATTGTAAAATATAGTCTTATATCGTTATTATGTTGGCCTAATG
CAATTAATAAAGCAAAAAAAAAAAAAATTAAAATATCATGTTTGGATAAA
TTTTTATTCGAATATGACTATTTTAGGTCATTATTAAATATGATATTTTA
TAATTAGTTTCAGTTAAATTTCCGGCTCATATAATTATTAAAGCGAATCA
TTTTCTTATGTTACATTATAATTTAACTATATATTGAATAAGATTTATGT
TGGTTAAATTAAATTTGTGTTATGTAACTAGAATATAAATCCAAATCCCA
ATTTCACGTATTTTGTTCTAGTTAAAATTTATTATAAATATATTAATAAT
GATATTAGACACTATCTGAAATACATATATAAATTTACAATCTAATACTC
CCTCTTTGACTTTTTAACATGTATATTGAGGTGTTAAAAAATAATATCTA
CACCTAATGAAAAAGTTCAATTCTTATATCAAATAAAAGTTTAGGATGCA
AACTTTTATTTGATATAAATTATATAAAAATTAATTATGTTTTGATGTGA
TTTTTTTAACGTGTAAAAAAATAAAAACAGCTAAAATGAGACGGAGGAAA
TATAACAAGAATAATAAATTTGAAATTAACCTAAAAGTAACCGATTAACT
TGAGAGTGATGACATGGTAAAATGAAGTGACTAATAAGTAAAAAATAAAA
TAAAATACAAAGTCGCGGACCCGAAGCGCCCAACAGCAGGGGATGTGTGG
GGCGCGTTACACATTTGTTTTGGCCGTTTCCTTCCTGGTAATAACACAAC
AGCGTCTTCTCAAGCTCAACTCAACATAAACAAATAATAATAGCCCAATT
ATAATTGAATTTATGATGATCATCTCTAACTCAACTTATAATTACCCTCA
ACTCCTCCCCTTGTTCTGATCTCTCCCCTTCTGAGTAGACTGAGTGTCTT
TTCACTACAACAACTAGCATCATGATGATGCAACACTCAGGTTTGGGCTT
ATCCTCTCTTTCCTGATTATTGTTCTTCATTTTCCTACTTGTTTGCTAAT
TGGGTTTTGCTTAATTACATGTGTAATTAATTTGAGTTGGAGAGTGGATT
GTGTTTACTAGTATTGATCAGCTGTGTGATACCCTTCAAGATTTTTGGCT
GAATTTGAATTGTTGGTGTTAAAGATTTTATATTTACACCAACAGCTTGC
TTTCTGTGATTGGTTATGCGCTTCAATTACTCCAAAATGATATGAACATG
TGCCTTTGCAAATTTTATCATTTTGTCTCCAGAATTCGGCCTTTTTGGTT
TGTTTTAGCGATAATTATCGGGATCATGTATATTCAATGCTGAGTTTCAG
GTTACAACCTTAGTGATTTGGTCCAAGAAGCCCAACACCGGTGGTTAAAG
CCCCCGGAAGTTCTTTTTATTTTGAAGAATTATGAGGATAGCCAGCTCAC
TGATAAGCCCCTTCAAAAGCCACCTGGTACTGTCCTCTTTTTATAATTCT
TTGTCTTTGACTGAAAACATTTTATTAGTTTCTTCAGCTAAAATTTATGG
ATGTTGCTTTTTATGTCTCCAGGTGGATCGCTCTTTCTCTTTAACAAAAG
GGTTCTTCGATATTTTCGTAAAGACGGTCATAGCTGGCGCAGGAAGAAGG
ATGGAAGAACAGTTGGAGAAGCACATGAACGCTTAAAGGTTCACTGCGCT
GCTTCATGTTTATTACTATTAGCAGCTATCATACGGTTTTAACAAGCCTA
AACAATATTACATAGCTTTAGTGTTTATCAAGAGAACCTATCAATAATGT
TAAACAGATGTCTTAAATTATTCTCATTGTACCCTCTAATATGGATTAAT
ATGATCGCAGATCAGGAATGTGAACTTTACATGTGTATTACACTGTAAGT
AGTGAACTGTGTGAGCCATGTTGATTTGACTTGAAAATCAAATTTCATAT
TGTGTGATTATATTGTATTTAGGGAGGGAGAGAGGTATAAGAATAATCTT
GTGCAACATTAAGAACCCAGCACTCTAATTGTGTGTGTAGTATGAGCATT
TGTAAGGATTCTACTTTGCTTAAAAAAATCAAGTGGTGGCTCTTTTATTC
TCTGCTACTGGATTACGTTGATGTATTTGAATTCTGTACATAGTCAGTGG
TCTATTTTTTATGTCTATTATCCCAGGAAATAGGGACACACATTTTACCT
GTCCTCTTCTGTTTTGTCCAGGTTGGAAATGCTGAAGCTTTAAATTGTTA
TTATGCACATGGAGAGCTAAATCCTAATTTTCAAAGGCGTAGTTACTGGA
TGCTAGAACCGTGAGTTGCTCATTTTGCTACAACTTTTAAGATTGTTATT
TTGGAGTGAAATTATAACCATTTTCAAATTTTTAATATTGTAATTATCTG
AATAACTCGAACCATTGTCAAATTGTTATTCTTTATAATCATTTGGTACA
GGTCTTTTTCCTTATTTTTCTTATTGATTTGTGCAGGGCATATGAGCACA
TTGTTCTTGTTCATTACAGGGATATAACGGAGGTATAAAGTCATCATGAA
AACTTTACTTATTATTTTTCTTCAGTCCTTATCTTGATTTTGTAATATTT
GTGAAATTTGTGCTATTATTGAAGTTTTATATAAAATTCAATGGAATGCA
CTATTTTCCATATGCTTTGAGGAATATTTATGATCCTAAAAGGTCTTGTA
TGTAAATGCATATTGATGCATGCCAAGGTTAAGAGGGTTGAAAATAGGGA
TAGAACATATCTCCACAGAATAAGTAGATAATAAGTAGGGGTGATCAAAT
AAACCGCATAAACCGCTCGCACCGCAAAATACGGTTTTTAATTTTTGTGG
CGCGGTGCAGTATGAGTTGCGGTTTGACATTTTACTCGTGTCGTTCAAAC
TGCACTTCACCACAATATAATAACATATATAAATATATTAGTAATTGTTA
AATAAAATTATATGATATACATATGTATATTATTTATAATTATGTTATGT
ATGTATTTGTTAAAGCTCTTCAAATAATAGTTAATTATTATTCTATTAAT
CTAGCATTACTTTTATACCAAATTTCATAAAACAATTATATTATTATTAT
ATGTCTCTTACTGCTCTTTAGTATTTTATTTACATTGTTTATATTTTTTA
GTAGTTGTTATAGCTTTGAAATGATAAATATCATATAGATTTATTATAAT
TTTTTTAATTATCATATATTTAAATTTATTCATAATTTCAACTAAAAATA
TTTATTCTTAAATATGCAAACCGCACTGTACCGCATTTTTGTGGTGTGGT
TTACGCGTTTTTTATGCTAGCGCAGTGCGGTTGCGGTTTGAATATTCACC
CAAACCGCATATGCGGTCTGGTTTGTTGTTTTAGAGAAAAACCTCACCGC
CCGCATCGCGATCACTCCTAATAATATTACTTAGTTAATAGTAATATTAT
TTATGTATGATGATTACATGTCCTTGTATAATAATTCCATCCCCAAGTTT
AAAAGTGAATAATGTCAAATTAACAAGACCCCATACAAAAGATATGCATG
AGAGGCAGAGCAACCTCAAATAATTGACGGAATGAATTTGTGGAAGGCAA
TGATAAATGATATCCAGAGACTTGTCTTTATTGAAGCTTTCTGGACTAAC
AAAGTCAATGTGGACTTTTAGGGAAAGTCCTGTTGAAGTCGTCAGGGCGA
GACTTGGCGTCATTCACACTCTCTTGCACGTTCACCTTATTGGCAGCTTG
TACTTATTCATGGTCATGTGTCAGAAGAATTAGAACATTATTTGGCGGAG
ATACAGACCCCACTTGAACATCCGAATTCGTTTTAAGACTGTTCTTACTT
TGAAGTTCATATAAAATTCAGAGATTATAGTCTCAATGCTTCCCCTTTTT
TGATCTTGCATCTTAGTTTCTTGCATCATGAACTTGTCACATTTGGAAGA
CACTTCAATTTTATTCTTTAATTCCTGGTGCCTATAAGTTGCGGTCAAAT
TATCATAATCATACAATTAAGTTTGTTTTATTGTAACCCAAATAAGATTG
TTTGTATACTCCGACTACAAATAGGATTTCAGTTTGATAACTACCAATAT
ATTAAGTTTCTAATGAATAACTACTACCAGATATCTGAATTCAAGAATAT
ATCTAACATAAGATAATTTATACTTATATCTGTATACTAATATACTAGTA
ATATGAAAATAAAATAAAATTATCATGTTTATGTTTTTCCTGCTCAACAT
CACATACCCTTATCAGATATTACTATTTCTTTGTAGTGTATTAGTATAGA
GTCGTAAACAACAAACCCGTATGCGGGCACTTGCTTCTAAAGTATTAATC
TAGTATTTAAGCTGGCTGTGAATTGTGCATTTTTCAGATTGATATATTAG
ATTAATAGATGCTTCTTTCACCAGTTATCTTACTAATATGGGATGGCAAG
CAATATAAGAGCTTCATTTTGAATAATGCATGTATACATTTTCAGGTAAG
ACATTCTGGAGGATCCATTTTACAGTCCTCTCCTGGATCTTATTCTACTT
TAAATCAGAGCCCCAGCTCATATACCACTCAGGTTCCTGGCACTACAAGT
TTTGCTCCAGAGTTTCAAGAACAAATTCAGATTTTATCAAACCCTGGTTC
TGTAAACGGTAGTTTTCAGTCAGACATCAAGAATGATATGATAAATATTT
CTGATGTAATAGAAAGAAATGAAGAGATATATAGTTCACCGAAGGTTGAC
ATTAATCAAGCACTGAAAAGGCTCACACAGCAGCTAAGCTTAGAAGATAA
TTGCTCCGGAGATAATGAATCATTCTATGATGATAATGGTGTCTCGCATG
ATACAGAATATAATGTACATGGTCAAAGTTCTATTTTTCCCAATCAGCTG
CAAGATGATTCAGATCATCGTATTGCACAGCTATTTCCAGGTTTGTGCCT
TCCGCACGTCTCATTGTATTATGCAAACTTTAAGTGTTTGCCTTTCTTTT
ATTGAAGTAAGTTTAGCATAAATGTAGCAGTTATTTGATTTTTAGAATTA
GTAATGCAACAAATGTGTTTGCTTAGCTATATCTATATGCTTCTTTCGCT
AACATCTTTAGTAGTTTTCAATTGTATATAAAGAGCTTTTGTCACATAGG
CATTAGGATTGGCTAGTTGTTCGACAATAAGCTTTGTAAAGTTTTTTGTT
GAGTGGTAGATTTGTTAAAATACATATTAAGCTGCTAACTTTATGGCTTA
TGTCCAAATCTGAACCTTCTAGTAAGCTGAAATGTTTTTCAATCATTAAA
CTATTTTTCAGTTTGCAATTGCTCAAGTTAGAATCCTGTAAATAAGTGTA
TCATCTGACACTGCATGTAACTTCTATTTATCTTAGAGCTAGTCAGAAAA
GAAACTATAAGATGCGAACATGTGAGCAGTGGTGGATTCTATGGTAGAAA
CTCATTCAGTCTAATAAACATTCACTTGAGATTTAAAATTTATTTATATT
AACTAATGTTTGTTCTAATTAATTATTATATATTCATTTAGGTTTAAAAT
TTTAGGAGCTTTCATATTTTTCCATCGTCAGATTTTCATAAATAATAGTT
TTATTTGTAATGATGTCAAATTTGTTCAATGTAGAATTTATAGTATGTTT
TATTTTCTAGGTGATGGTTATGAAATTAATAGCATGAATGGCTATTAGTA
TCAGTGACATTACATTGTTGATTGTTCTAAAAAGGAGCATTCAACTTCAG
ACTCTGTATAAATACTTAATATTGTTAAGAAACTGTATTTATAATTTTTT
TCATTATTTTTTTTGCCCAATTTATTTCTATTATACTACAGTTCAGTTCT
CTTGGTAGCAGAGCAAGCATTGGAATCTAGCACCTGGATTACAGTAAAAA
AATAAAACTTGTATCTACATAATATGTTCATAAGAGAATTGATGGATTCC
ACAGCTCCCTTGCAAATCCACCCCTGCGTGGGAGTATGTGGAACAAAGCC
TAATATACTCAAGCTTTCCCATATGAAAAGTCGTTTAAATGCTGCCCATA
TAGTGGTCATATAACTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCT
CTATACACACACACACACACACACACACACACACACATATATGAGTAAAG
TTCCTTGGAGACCTATTTTTCTTGGAGTATTGGAGACCACCATCCAAACC
GTCCAACAATCTATAATCTAACGGCCTACAAAAACATTATTTTAATAAAC
ATTTAACTAAATACAAAAACATGTGTGTACGTACGTGATAACATACGATG
ACAGGCAGTTGAAATACTGTATCATCATTTTGTTCTGCAACTTTTTTATT
CCTCCCATTTGCGTAAGAACAGCACTGCTAATCAAGCATTCCCCTTTTTC
AGATTGTGATAATTTACATTCATCTGTCCACTTGTCCTGCATTTTGTCTC
GTCCTGCATTTTGTCTCTTGTCTCGTAATTTAAATTCATATTGTTCCATA
GTCGTCCTATTATATTTTCTCTTCCGCTATATTATTTTTTATAGATTTGT
ATTGTTCAGTAACCATCAACTGTGTTGACGGAAGTGCGGGATTTTTGATT
ATACGCAATATATGTCTCTAACTGATTATAAATACATGTATTGAATGCAT
CAATGTAATAATTAATACAAAAACAAATTAATGTCTTTAATCGTGTCCAT
TAAATAGATATAAAAATCAATGGTGGGAGATGGGGTTTCCAGGTCTCCAA
TAAAATTGGGTCTCCACAGAACCCAACTCATATATATAATATAGATTCAA
GTTCTATGGAGTACAAAAGATATTGGAGTATTGGAGTACAAGATTGATAC
AATATAATCTAGTCATTTAAATCTTAATTTTTTTGTTCTACAATATTTGT
AAACATCCGACAACCTGCAGATTATGTTCTACAACATAAACATTGTAATC
AAAAGATAGAACAATTACCTTTATAAATCGTAGGACATTATGTTCTGCAA
TATAACTTTTAAGCAGAACAATAATCTTAATGCTCTTTAAAGTTGAAAGA
TAATAATGATTATTTGATTATTATGTTTAATACTACTTATAAATGATAAG
TTATATATAAATTTGGATAATCAGAGATATTATTTATGATTAAACTAAAA
AATTATGATTTTGTACTCCAATACTCCAATGTTTTTATGTACTCCATAGA
ACTTAACTGAATATCACTAAATTCTCAAACAACCCCACTTTCTCCTTCTT
CTTCTCCAACCCTCCACCCCACTTCTGGCAGCTTCACCCTACCACCCCGC
CAAGTCTCTGCTACTCTCTCCACCTCCATGCCGCCCGACCCTCCATAGCC
ACCACCTCCATGTCGGCCTCCATTATTTATATCACCACCAAATCCAACCC
CCCTCCGGCCTCCACCGCCCCTTCCATTCCACCCCCATCTCCACCTCCAC
CTGCACCTTCGTCATCACCTCCACCTCGGTCTTCCTCACCTACAGTACCC
TATATCTAGCTTAATGCCGATTTAAATTCCAGATCTTTGCCAAAAATCTG
CCGGACAAAGCTAAAGGCTCCTTCCATGTCCACCACCTCCATCTCCACCT
CCATTATCTCCACCACCGCAACCACCACCTGAATCGGCAACTAGAACAGA
TTCAGAAATTCTGGGCAGTTTCCGCAAGTTTTCACTAATTCGTGCAACAC
ATATCACTAAATCGTAAAGAGAATATCACTAAATTGTACTGAGGATATCA
CTAACTTGTATTGGTTTCTAGTTTTTATTTTAAAAGTGGTTTCTATTTGA
TCATGAGCCTATATATATATAGGCTCATGATCAAATACAAACCACCTTTA
AAATAAAAACTAAAAACCAATACAAGTTAGTGATATTCTCAATATAATTT
AGTGATATTCTCTTTAGAATTTAGTGATTTGTGTTGCAAAAATTGGTGAA
AATCTCCAGCAGTCAGTGAAACCTCCAGATCTATGCTTAGATTTGTGCTT
GTTATCGATTCTGGGAGCAATAACGACGATGGAGATAGCGGTGGAGGTGG
ACATGGAAGGGCGGGAGCATGGAGGGGATGGGTCGAGGCAAAAGCAGGGC
GGCAGAGGAGGCGGGGGGCCGAGGAGACGGCTGAGATGGCGGAGGAAGGA
GACAACGGATGAAGCTGTAGTTTCAGGTGGCGTAGCTTCGCCGGAGCTGT
GGAAAACAACTGGGGTTGCCATTAAAAGGCGACAATGGAGGTGAAGGAGG
TGGAGAAGAGGAGGCAACAACGGTGGAGGTGAAGGAGGCGGTGGAGGAGG
AGGCAGCAGCAGAGGTGGAGGAGGCGGAGATGGAGATTGAGGTGAAGATG
GAGATGGCGGGGAAGATGGAGAAGGAGGTGTAGATATTAGTGATATGTTC
TTTAGAATTTAGTGATATTTGAGGTGGGTTTTTAGTTTGTAGAATAAGGA
GGTTTGTATTAGAGTAAGTCTCTCTCTCTCTCTCTATATATATATATATA
TAGGGTCACGCTCTATAGAGAACAGTTTTGAGCATGAGAACACTTAGAAC
ACTATTGTGCTGCTGCAGAACAATACAACATTCAAAAAGTGAAAAATCTC
CAAAATCTTTGTTCTGCACTTTTTAAAAGGTGCAGAACAACTGATCTCAT
TATTCTTAGAAATAATATGTTCTCACTTGAATCACTGCCTATATCACACA
CACACACACACACACACACACACACACACACACACACATATATATCCTTT
GTAAGAATTTCTTGGTTTAGTAGATTCAGAAACTTTTGTTCAGTGAGGCA
TCTGTAAGCTAGCACCAATTCATCATTCCCCACTTGTCCGACCGTTGCTG
AGCAATTTTTGGATATCAAACGGACCTCATGGCCACATAGTCTTCTAATC
AAATAAAAAAAAAAAAAATCCCATGATAAATGATGATCTAGCTTCCACTT
AGTTAAATTCTAAAGTATGGATATTGACTTTACATTTGAGACATATTCTA
GGTTTTGGTATATTGGAGATGGTACCTTCATGTGCAGAGATAACCATGCT
GTTAAAACTTATTCATCTGTGTAACCTTTCCCCCCCTAAAGTGAGGACTT
AATAAGATTTTGTGCTTGATTTTTATATGATTATCTGTTTGCACTGCTAC
TCTGTTGATCAATATGAATATGATAATGAAGCAAAAGATCTGATGGGTAC
TCTACTGAAGGTGATGGCAAAGGACACTATTGGCAACCGTTTGAGGATGA
CTTTTCATGTAATGAAGAAAATGCGATTCTGAATGAATTGCTAGGCTCCT
ATAATAATGCAGCACCTGCTGGGTCACAAGAGACACATCTGCACATACCA
AATGAGAATGTATGACACCTGTTACTTTATCTGTTATTGTCGGCATACAT
ATATTAATTTACTGAAAGTTGTAATCTTATGATTATGTACTACCTTTTTG
TTCTGTTCAGTTTTCTTTATAAGATGGATTGCTGCTATAGAGATTAAATT
TAATTTGCAAGTGAAAATATATTTGCACATGCCTTTGTCTTCTCAGTATC
CTGATTCCTGTCCTCAATATTTTCTAGTTTCCTATAATCATACCTGTAGA
AGGGAATGCTTTGACCAACCCTATCATGCTCGATTCCCTTGGTTATGTTA
ACATATTCGTTCTCTGAACAGGAAGCATTCCTTTCTCCGTCAAGTAAAAA
GCCAGTTGAAGAGGAAGAAAGCTTTGAATGGGCAGATTTAGCTGTAAACG
ATACTTTTAGCTGTACTGATTCTCAAATCCTGATGATTTATCTGAGTATA
CTGAATTTTGGAATTCTAAATCTCTAAAACTTTATTACAGGTCCAACTTC
AGTGCTGCTGCCGGAAGAAGCTGAATACTTCAAAATTGCTACATATTCCC
CTTCGATGAATGTCTACGGGATTAACTCTGATCATTATTCAACAGTATTT
GAACAAGTTCCAACAGAAAGGCCTCTTGAAGAAAATCCAAGTTTGACTGT
CTCTCAAAAGCAGCTATTTACAATTCATGAAATATCACCTGAATGGGGTT
ATGCTCATGAGGCTACTAAGGTATCTCTTTTCTTCTTTTTTTAATCCCAT
TATAGCTATGTGCTCAATCCTTTAATTTTAATGTTAATGATATACAATAG
CATAGCAAAATGGTAGGTGTTACTATTAGCCTCCTGGTTGCTTAATGATT
GAATGTGAGGGTGACATGGTGTTCATGAAATATTGCCTGAATGGGATTAT
GCCCATGACCATGAGCCATGAGGCTATTAAGGTATCTAGCCCTTTTATAT
TATGTGGTGAATCCTATTTATCTCTAATCCTATGTATTTAGTATTAATGA
TGCAGAGCAGCATAAAAAAATTTGTGATATTAGATTATTAGTCATTATTA
AAGTGCAGGTCTTAAACTGTTAATATTAGTCACCTGATCGCAATTCTGAT
AAAAAAAAATTTATGATAAAGGCAAATGCAACACCACTAATAATATAATT
ATTATCCCATAAAACCATCAGGTTATGTAATCAAAAAATCCTATTCTGAA
AGATATTATATTCAATTGGAAGTATTGAGCACAGGGTAGGGTTTGGTTTC
TGTCTGTTTTCTTTTTCATTTCTGGGCTAATTTACCAATCATGTCCTCAG
GTGCTGCTCAAATGTACTTAATCAATTAAAATGTAGCATCTTATAATTTC
TCTTAGTAAAAACTTAGTACTTTAGTATGTCATTTTCCACTTAAAAGATT
TGTTTTATTCTTTAGTTAAGGCATCTAGTGTCAATTAGTTGCTTTGTGAA
AGTTCAAATCTTATTTAAAGCCAAGTTCCTATTTGCAGGTTATTGTTATT
GGATCATTTCTCTGTGATCCATCAGATCATGTCTGGACCTGTATGTTTGG
TGAAATTGAAGTTCCTGTTCAGATTATTCACGATGGTGTTATTCGTTGTC
AAGCCCCTCCTAGCTTGCCTGGAAAAGTTACGCTATGTCTTACCTCTAGC
AATCGAGAATCTTGTAGTGAAGTCAGGGAGTTTGAGTACCGTGAATGTCC
GAGTAGTTTGCCTCACAGTAAATTGCTTGAAGCAGAAGCAAGCAAGGATT
CTGAAGAACTTCTGTTTCTTGTCAGATTCGTGCAAATGCTTCTTTCTGAT
CCGTTAATATCTAAAAGGGAAATCTCTGGATCAGGAATTGAGTTGCTAGG
GAACGTTGAAGGTAATGAAGAATTGTGGAGCGGGGTTATAGAGTCTCTTT
TAGCTGGTAACTGCACTTCTTCTGGCATAGCAAATTGGCTTCTTCAAGAA
CTTCTGAAAGACAAGTTGCAACAATGGCTTTCTTCAAGACTGCAGCAAGT
AAATGACCTGCAAGGAGGTTCCTTTTCCAAGAAAGAGCAAGGTATAATCC
ACATGGTTGCAGGAATGGGCTATGAATGGGCTTTGAAACCAATACTGAAT
TCTGGAGTCAATGTCAATTATCGTGACACTAATGGTTTTACCGCTCTCCA
TTGGGCTGCACGTTTTGGGAGGTATCTGTTGCTTTCCTTCTGGCATGTGG
TTTATGTTTATTTTAATTCTGCTACTCTTTTTCATGGTATTGAGAACTGT
GTGGGAAAATAAAACTATTCACCATTGTCTTTGAACTAGGAACCTATTGG
TAATTAGGGCCAAAGGAAAATTCGCTAAAGGGCTGGGCTAACTGACATGG
GTGTGAACGAAATATACTTGATAGCATTAGGCCGATTATAGTGTAAGTCA
ATGAATTAAATAAAAGTAATATGATCTAATCCATCAATTATACGCTACTT
TTAGCTACTAGGTTATAATAAATAGATAAACAAAATTACAATTATGTATC
TAATTGATAAATTAATAGTTTAACTACAGAATTAGAAAAGAAAAAAAAAG
GTGCTTGATCATCAGCTTGTCCCACTTGATTATTTTTAGAACAATGTATA
AGACATGTTAAGTAGATACTGCTAAATTAGAAGGAACTTGTAATTACTTA
AAAGATTCACTCTAGACTTCATATTGTAAATCAAAGTGCACATCTAGTCT
GCTATGCTTCAGTCACCCCATCGCCCACAGACACCTTTCTTCCCGTTCTT
TGATAGTAGGGTCCAGTTAACACTGGTTAAGAAATTTGGTGAATTTTGCT
GCAAATGGACGCATCAAGTTGATGCTAGTTTTATGTAATCCATCTGAAAT
GTTGTTTCTGTATTAGAGAGGAAATGGTAGCTGCTCTCATAGCATCTGGT
GCCTCAGCTGAGGCTGTTACTGATCCTACCAAAGAAGCTCCAACTGGTAA
AACACCGGCATCCATTGCTGCGGAATATGGATACTTGGGTCTTGCAGGTT
ATCTTTCTGAGGTGTCACTAACAAGCCATCTTTCATCCCTCACTATAGCA
GAAAGTGAATTGTCTAAAAACTCCGCTAGTTTAGAAGCAGAAAGAACTAT
AAATAGCATCTCTGACATAAGTACAATAACATCTGAGGATCAGCAGTCTT
TTAGGGACTCCTTAGCTGCAGTACGAAATACAGCTGAGGCTGCTGCACGT
ATTCAAGCTGCTTTCCGTGCCCATTCTTTCAGGAAGAGAAAATTAAAAGA
AGCTGCTGCTGCAGCTTTTATGGCTAATGTTGATAGTCAAGATCAGTACA
GTCTCCTCTCAAATGATGCACAGAGTCTTTCAGCTGCATCAAAACTGTTT
TTCCGTAACACTCGTGATTACAATAATGCTGCTTTATCTATACAGAAGAA
ATATCGTGGATGGAAAAGTCGTAGGGATTTCCTTGCATTTCGCCAAAAAG
TTGTGAAGATACAGGTAAGCTACATATTTTTTGAACATTTAATGTTCTAT
ACGTATTACGGTATTAGTCACAAACATGCTTTAAATCAGAATTTCAAAAT
TGTAAGATGAAATTAATGATTCAGTCACCTGTTATCGGGCTCTAAACTCT
GTATGTAAATCAAGAATCAGGAAATTTGCCATATTGGAACCTTTCTACAG
AAAAATTGACAAATTAGAGACTATTTCAAAAATTAATTATACTCTGATCG
GCGAAAACATTTACATCCAGCCTTTATCCAGGAAGTATTCCTCCCGAAGT
TGCACAATTTTGTGAAATTTCCTTCAACTCGAGCGACATTGGGAAGTTAA
ATACATTGCTTTGTTTCAGGCGAACATTCTGTAGATACTTATTGTAAAAC
GCTTTCTTAAACCACATACTATATGGATTGGAAGTTATATACTGTGTTGT
CATTAAGGTTACTTTTGGTTTGTGATGTCCACATCGAACCGGACTCAATA
ATCACTTTAACTTTTTTTATCCTTTTTTTTTTTGCATTTTCTTGTATTTA
ACCAACATATTGATTTGCACATTGTGTTCTGCATATATTTCCCTTATACG
AGATTCTTTTTGGCAGGCTCATGTCAGAGGGCATCAGGTTCGGAAATATT
ATAAGGTAATCTGCTGGGCTGTTGGTATTCTGGAAAAGGTTGTTTTAAGG
TGGAGACGAGGAGGAGTTGGTCTCCGAGGATTTCGGAATGAATCAGAATC
AATTGATGGAATTGAAGATAAAGATGAAGACATTGTGACAGTGTTTCGTA
AACAAAAAATACTGAGTATTGATGAAGCTGTGGCAAGGGTACTATCGATG
GTCACATCCTCAGAGGCACGACAACAATATCGCCGCATGCTTGACAAATA
TCGCCAAGCTAAGGTTATCCATGGCTTGCATCTTTCTAGTCATATGAGTT
GCTATACATCTGATCTAGGAGTACAAAACTATATCTTTTAATCTCATTGC
ATGTCTTAGTGGACAAATTTTTTTAGTATTATCATTCTCATTATAGTGAA
TTTTCTGAACCAACAAAATATCCAGTAAGTTTATATAGCTATACTATAAG
ATGGTCTATACTATACTGACTTGATAAATATAACACAGGCTGAACTTGGA
GGGCCGGCAAATGCTGCGGCAGCAGGAGAAGCAGCATCGACTTCTCTTGA
TATGTCCAACATGGAAAGTGATGGCACATACTAG
Sequence Length:
14784
Sequence Checksum:
fc2be54297ade7562dec567416bf9e7a
View location in JBrowse:
Cds:
>DCAR_026454cds ATGACGAGTGAAGACTGCATGACTGGTGAATATGCAAATAGGAAAGAGAC TTGCATTTGCGGTTACAACCTTAGTGATTTGGTCCAAGAAGCCCAACACC GGTGGTTAAAGCCCCCGGAAGTTCTTTTTATTTTGAAGAATTATGAGGAT AGCCAGCTCACTGATAAGCCCCTTCAAAAGCCACCTGGTGGATCGCTCTT TCTCTTTAACAAAAGGGTTCTTCGATATTTTCGTAAAGACGGTCATAGCT GGCGCAGGAAGAAGGATGGAAGAACAGTTGGAGAAGCACATGAACGCTTA AAGGTTGGAAATGCTGAAGCTTTAAATTGTTATTATGCACATGGAGAGCT AAATCCTAATTTTCAAAGGCGTAGTTACTGGATGCTAGAACCGGCATATG AGCACATTGTTCTTGTTCATTACAGGGATATAACGGAGGTAAGACATTCT GGAGGATCCATTTTACAGTCCTCTCCTGGATCTTATTCTACTTTAAATCA GAGCCCCAGCTCATATACCACTCAGGTTCCTGGCACTACAAGTTTTGCTC CAGAGTTTCAAGAACAAATTCAGATTTTATCAAACCCTGGTTCTGTAAAC GGTAGTTTTCAGTCAGACATCAAGAATGATATGATAAATATTTCTGATGT AATAGAAAGAAATGAAGAGATATATAGTTCACCGAAGGTTGACATTAATC AAGCACTGAAAAGGCTCACACAGCAGCTAAGCTTAGAAGATAATTGCTCC GGAGATAATGAATCATTCTATGATGATAATGGTGTCTCGCATGATACAGA ATATAATGTACATGGTCAAAGTTCTATTTTTCCCAATCAGCTGCAAGATG ATTCAGATCATCGTATTGCACAGCTATTTCCAGATCTATGCTTAGATTTG TGCTTGTTATCGATTCTGGGAGCAATAACGACGATGGAGATAGCGGTGGA GGTGGACATGGAAGGGCGGGAGCATGGAGGGGATGGGTCGAGGCAAAAGC AGGGCGGCAGAGGAGGCGGGGGGCCGAGGAGACGGCTGAGATGGCGGAGG AAGGAGACAACGGATGAAGCTGTAGTTTCAGGTGGCGTAGCTTCGCCGGA GCTGTGGAAAACAACTGGGGTTGCCATTAAAAGGCGACAATGGAGCAAAA GATCTGATGGGTACTCTACTGAAGGTGATGGCAAAGGACACTATTGGCAA CCGTTTGAGGATGACTTTTCATGTAATGAAGAAAATGCGATTCTGAATGA ATTGCTAGGCTCCTATAATAATGCAGCACCTGCTGGGTCACAAGAGACAC ATCTGCACATACCAAATGAGAATGAAGCATTCCTTTCTCCGTCAAGTAAA AAGCCAGTTGAAGAGGAAGAAAGCTTTGAATGGGCAGATTTAGCTGTAAA CGATACTTTTAGCTGTCCAACTTCAGTGCTGCTGCCGGAAGAAGCTGAAT ACTTCAAAATTGCTACATATTCCCCTTCGATGAATGTCTACGGGATTAAC TCTGATCATTATTCAACAGTATTTGAACAAGTTCCAACAGAAAGGCCTCT TGAAGAAAATCCAAGTTTGACTGTCTCTCAAAAGCAGCTATTTACAATTC ATGAAATATCACCTGAATGGGGTTATGCTCATGAGGCTACTAAGCCTCCT GGTTGCTTAATGATTGAATGTGAGGGTGACATGGTGTTCATGAAATATTG CCTGAATGGGATTATGCCCATGACCATGAGCCATGAGGCTATTAAGGTTA TTGTTATTGGATCATTTCTCTGTGATCCATCAGATCATGTCTGGACCTGT ATGTTTGGTGAAATTGAAGTTCCTGTTCAGATTATTCACGATGGTGTTAT TCGTTGTCAAGCCCCTCCTAGCTTGCCTGGAAAAGTTACGCTATGTCTTA CCTCTAGCAATCGAGAATCTTGTAGTGAAGTCAGGGAGTTTGAGTACCGT GAATGTCCGAGTAGTTTGCCTCACAGTAAATTGCTTGAAGCAGAAGCAAG CAAGGATTCTGAAGAACTTCTGTTTCTTGTCAGATTCGTGCAAATGCTTC TTTCTGATCCGTTAATATCTAAAAGGGAAATCTCTGGATCAGGAATTGAG TTGCTAGGGAACGTTGAAGGTAATGAAGAATTGTGGAGCGGGGTTATAGA GTCTCTTTTAGCTGGTAACTGCACTTCTTCTGGCATAGCAAATTGGCTTC TTCAAGAACTTCTGAAAGACAAGTTGCAACAATGGCTTTCTTCAAGACTG CAGCAAGTAAATGACCTGCAAGGAGGTTCCTTTTCCAAGAAAGAGCAAGG TATAATCCACATGGTTGCAGGAATGGGCTATGAATGGGCTTTGAAACCAA TACTGAATTCTGGAGTCAATGTCAATTATCGTGACACTAATGGTTTTACC GCTCTCCATTGGGCTGCACGTTTTGGGAGAGAGGAAATGGTAGCTGCTCT CATAGCATCTGGTGCCTCAGCTGAGGCTGTTACTGATCCTACCAAAGAAG CTCCAACTGGTAAAACACCGGCATCCATTGCTGCGGAATATGGATACTTG GGTCTTGCAGGTTATCTTTCTGAGGTGTCACTAACAAGCCATCTTTCATC CCTCACTATAGCAGAAAGTGAATTGTCTAAAAACTCCGCTAGTTTAGAAG CAGAAAGAACTATAAATAGCATCTCTGACATAAGTACAATAACATCTGAG GATCAGCAGTCTTTTAGGGACTCCTTAGCTGCAGTACGAAATACAGCTGA GGCTGCTGCACGTATTCAAGCTGCTTTCCGTGCCCATTCTTTCAGGAAGA GAAAATTAAAAGAAGCTGCTGCTGCAGCTTTTATGGCTAATGTTGATAGT CAAGATCAGTACAGTCTCCTCTCAAATGATGCACAGAGTCTTTCAGCTGC ATCAAAACTGTTTTTCCGTAACACTCGTGATTACAATAATGCTGCTTTAT CTATACAGAAGAAATATCGTGGATGGAAAAGTCGTAGGGATTTCCTTGCA TTTCGCCAAAAAGTTGTGAAGATACAGGCTCATGTCAGAGGGCATCAGGT TCGGAAATATTATAAGGTAATCTGCTGGGCTGTTGGTATTCTGGAAAAGG TTGTTTTAAGGTGGAGACGAGGAGGAGTTGGTCTCCGAGGATTTCGGAAT GAATCAGAATCAATTGATGGAATTGAAGATAAAGATGAAGACATTGTGAC AGTGTTTCGTAAACAAAAAATACTGAGTATTGATGAAGCTGTGGCAAGGG TACTATCGATGGTCACATCCTCAGAGGCACGACAACAATATCGCCGCATG CTTGACAAATATCGCCAAGCTAAGGCTGAACTTGGAGGGCCGGCAAATGC TGCGGCAGCAGGAGAAGCAGCATCGACTTCTCTTGATATGTCCAACATGG AAAGTGATGGCACATACTAG
Pep:
>DCAR_026454pep MTSEDCMTGEYANRKETCICGYNLSDLVQEAQHRWLKPPEVLFILKNYED SQLTDKPLQKPPGGSLFLFNKRVLRYFRKDGHSWRRKKDGRTVGEAHERL KVGNAEALNCYYAHGELNPNFQRRSYWMLEPAYEHIVLVHYRDITEVRHS GGSILQSSPGSYSTLNQSPSSYTTQVPGTTSFAPEFQEQIQILSNPGSVN GSFQSDIKNDMINISDVIERNEEIYSSPKVDINQALKRLTQQLSLEDNCS GDNESFYDDNGVSHDTEYNVHGQSSIFPNQLQDDSDHRIAQLFPDLCLDL CLLSILGAITTMEIAVEVDMEGREHGGDGSRQKQGGRGGGGPRRRLRWRR KETTDEAVVSGGVASPELWKTTGVAIKRRQWSKRSDGYSTEGDGKGHYWQ PFEDDFSCNEENAILNELLGSYNNAAPAGSQETHLHIPNENEAFLSPSSK KPVEEEESFEWADLAVNDTFSCPTSVLLPEEAEYFKIATYSPSMNVYGIN SDHYSTVFEQVPTERPLEENPSLTVSQKQLFTIHEISPEWGYAHEATKPP GCLMIECEGDMVFMKYCLNGIMPMTMSHEAIKVIVIGSFLCDPSDHVWTC MFGEIEVPVQIIHDGVIRCQAPPSLPGKVTLCLTSSNRESCSEVREFEYR ECPSSLPHSKLLEAEASKDSEELLFLVRFVQMLLSDPLISKREISGSGIE LLGNVEGNEELWSGVIESLLAGNCTSSGIANWLLQELLKDKLQQWLSSRL QQVNDLQGGSFSKKEQGIIHMVAGMGYEWALKPILNSGVNVNYRDTNGFT ALHWAARFGREEMVAALIASGASAEAVTDPTKEAPTGKTPASIAAEYGYL GLAGYLSEVSLTSHLSSLTIAESELSKNSASLEAERTINSISDISTITSE DQQSFRDSLAAVRNTAEAAARIQAAFRAHSFRKRKLKEAAAAAFMANVDS QDQYSLLSNDAQSLSAASKLFFRNTRDYNNAALSIQKKYRGWKSRRDFLA FRQKVVKIQAHVRGHQVRKYYKVICWAVGILEKVVLRWRRGGVGLRGFRN ESESIDGIEDKDEDIVTVFRKQKILSIDEAVARVLSMVTSSEARQQYRRM LDKYRQAKAELGGPANAAAAGEAASTSLDMSNMESDGTY*