Resource Type:
Gene
Organism:
Name:
DCAR_029365
Identifier:
DCAR_029365.gene
Locus Tag:
DCAR_029365
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_029365, is a part of gene, DCAR_029365. |
| The genetic_marker, MK004979 K2423, is located in gene, DCAR_029365. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_029365 | DCAR_029365.mRNA | mRNA | DCARv2_Chr9:5424139..5428893 |
Sequence:
CGAACATACTCAAAGTTGTATGTATAATCATCAGTCCAAAACCCTGGCTA
TACCTCTTTCAGCACCCAGGCCATCTTATTTCTATCTCATATACATATCA
TTTGTGCTTCTATATATCTATATATCTCTTCCTCTTCTTCTTCTTCAAGG
TACAGTCTTTACTCTTATATTAAACTTTTCAATTTGTTCTCGCAAGTGGT
TTTTTTCCTGATTGAATTGTTTATCAGTCTTGTAATTGTTTGTCATTTTA
TGGGTTTTGTGTTAATTTTGTTATGTTGGGTTGTATGATATTTGATGATT
TAATATAAGAATGATGTTTTTCTAATAAAGATTGTACCTTTCTTGTTAAT
TATGGTGGCCCTTTTGATTGTTTGGATTGTATACGAGATTTTTGTGGGTG
TGGAAGCTATTGGTTTTGAGGTGTGGTTGATTAGTTTGTTTGTATTGAAA
TTTCGAGGCAAACCATTTTCAAGGGGGTGGACATATTGATTATTTGTTGA
AGTGATATAGGGTTGTATTTCTGGGTTTTGGGCCGTCAATTTTGTATCAT
TTTAAATCTCGTGCGTTGATTCTGCACCACAATATAAGCTTAATTGGGTA
TTAGACGGGTCCGATTAATACTTCTGCGTTGGAATATAAAAACTTCAAGT
TCATAATTTATTAGTTCATATGCTAAAGATTCATGATCGTAATAGCTATA
CTGTCACAACTGTGCTACATTGAACTGGTCTAGGACTTGAATTGACCATA
GTATGCGGCAACTGCATATCCGTCCGAAGTTGGAGTTATTTTTGGCAAAA
GTGATCGTGATAATATTACCCAGCTCTAATATCTCCGGATATATTACTAG
TACATTTTTATGTATGTATCACATATCTGTAAAGTTGAAATGGCCAGAAT
TTGTGCAAGGCATTACTTTTCTCTATCTAAGGCACTGGGATCAAATGTTG
CTAACTTGCTATAAACATGTATTTTGCACGCTTATGTTGTAGAGTATACT
GGGAGTATTTCCTCTCTCTACTGTCTGTATGCACTATTCAAGTTCTTATA
TTTGCTTTGGAACACCTGGGATTTCCTTAGTAATTAACACATGGAATGCT
AGAAATCCCTTGTAAGCCTGATCAGAGTTTGTGTAACACTTTAACTTCTG
TATGTAGATGGCCAGATGGGATGAAATCATGTCCCTTCCCGTGCAGAACC
CTCCTATCTTGGAGTTTTCCTCTTCTGATCTTGTGTGGTCGAAGGTGGAG
GGTTGGCGTGACAACATAGATAGAGTAGCTCGAATTCCCTTTGCCAGAGT
AGACAATTTTCTGACCGGTGAAGCCTCTAGAAAAGATTGCCCGACAAAAT
TTCACCGCGAGGCAAGGAGGGTGCGCCCACCTGAGACGGCCTACAAGCCC
AAAGTTGACGGAGTTCTTGAATACATTCTGTAAGTGTTGGATCTAGAATT
ACTCTTTTTTTTATTATACATCTGTACTTCTACTATATCTCTGATTTTCA
ATTGATTTTTAAATTATGTAGCTATTGGTGCTCTTTTGGACCTGATGACC
ATCGAAAAGGTGGCATTGTTAGACCTAGTAGAAAATCGTATGTCACCAAA
AAGAAATCTGCTGGGCGTCCGAACACTAAGAGAGGCTGTACATGTCATTT
CATTGTGAAGCGTTTAATGGCTGAACCATCAGTAGCACTCATTATATATA
ACCAAGACAAGCACATTGATAAGAAAGGTTCACCATGCCATGGCCCACAG
GACAAAAAAGCTGCTGGAACTCGTGCAATGTATGCTCCTTGCATCTCGGA
AGACCTTCGGCTTCGTGTCTTGTCCCTTCTACATGTTGGGGTCTCAGTAG
AAACAATAATGCAGCGACACAATGAATGTGTGGAGAAACAAGGAGGTCCA
AGTAATCGTGATGATCTTTTAAATCACAGGTTTGTTCGCAGGCAAGAGAG
GAGTATAAGACGTTCAACATACGAACTTGATGTGGATGACGCAGTGAGCA
TGAGCTTGTGGGTCGAAAGCCATCAGAACCAAGTTTTCTTTTATGAAGAT
TTCTCTGTTTCTAGTCCATTCACTTTAGGTATTCAGACAGAGTGGCAGTT
GCAACAAATGATTCGATTTGGTAATTGCCGGCTTCTTGCTTCTGATTCTA
GGTTTGGAACACACAAGTTAAAGGTATGCTCTGCTCTTTATATCTTGTAG
CTGTTTTTTGTTGTCAATGATGACAGAATGAATACCTTCTTTAATTAATG
TGTTAATTTCTGCAACTTTAACCAGTACCCAGTCCATAGTCTGGTTGTAT
TCAACTCAGACAACAAGGCAATACCAGTTGCCTGGATAATAGCACCAAAA
TTTGCAAGCACAGATGCACACAGATGGATGAGGGCTCTTTACAACAGGGT
TTGCACGAAAGACCCTACATGGAGACTTGCTGGTTTCATTGTGGATGATC
CTTTGATTGACGTCTCTGCGATCAGGTAGACTTTTGAGCCCTTTATCCCT
GAATAGCTTTTAATTCAACATTCAATATTCCCTTTCTCCGTTTTTTTTTT
CTAGTAATTTTGTATACAAATTTATGATGCCCATGTGCTAACAATTTGAC
ATTCCAAAAACTTTAAATGAGAAGGCTATCACAGGAAGCAGTTACCACTT
ATTTTATAACTTTACTATTTTTCATTACATTTTTTGTTAATATTGCTGCA
TTATAATTACTACAATCTACTTGCAGGGAAGTGTTCCAGTGCTCTGTTTT
GATTTGCTTATGGAGGGTACGTCATGCATGGCATAAAAACTTGATGAAGA
AATGTCCAGAAATCGAGATGCGTGCTGAAATATCAAGACTGCTGAGTCAG
TCGGTGCAAAAAATCTGCAGAGGATCCGGAACTGTGGGGTTGTTTGAAGA
TGTCATGGAAGATTTTGTTGATGCCTCAGAATTTGTAGATTACTTCAAGG
CAGTTTGGTACCCCAGGATAGGTTAGTTGCACCCAACTTTTAAAAGAAGA
ATTAATCTGTTATTTTTCTATAATAATCATTATATTTAGTTTATCCAGAA
CAATAAGTAAAAATGATCTGATTGGTATGTCGGACTATATGGTATCACTC
AGCGACCAGTGTGATTATAAAGCAGGTTAGCCACTTGATTGGTGCTTTAC
TACAACCACCCATGTTATAGTGAAAAATAGAAGAATTTTAATATGTTCTG
AAGGATTTACAAAGTTAACATAACTATGGTCTCATTTGTTTAGTTCTTAA
TAGAACATTTTACAACAATTATACTAGTTCCGATCAAATGACTTTAGTTT
TATGTCTTCCCAATTATTCCCTAATAGCTGAAGCTTTAAGATTAAGAAAT
GAAGCCTAACGATTCAGAAAATGGAAGGACAATTTATGTTATGTTGATTA
CTTGATTCTGATGTAACCATGTACGGGTTTATATAATTCTTATTAATACT
TTACTTTAGTTATTGATTTTATATTATTTATTATTATTATTATCATCTAT
ATTCAATTCCAACACCAAAAAATAGTTTTTTTTCTTTCAATAATAAATAT
TAAGTTAACTTTCGTAGTTGTGAGGGATCGAACGTTAGTCATTTACTTAG
TTCCAACACGGAACATGGCTATTTTACCCTTGACAACCTTTGACCAACCA
CATTAACTCTCAGGCTAATTATATATAGGATATAATAATATTTATAATTT
TTATTAAAGATATTAAATATCATGAGAAATACTAAAATTATGATAGTAAT
GATTATTTTTGAGTTTTAAATATATACAGAAAAACTAAAAGTTTCGATTA
TTATTAAATCTTCTTTTTCAATGCTATGGTAACAATCTTCTTTTTTGATG
CCATAATTATTTTAAAATCTTGACATAAATATTATGTATTTGAATTTAAA
ATTTGTTTTGTGAAATTCAAAGAGAAATTTTTTAAATATACTAATTATAA
ACTTCATATCAAATTTAAAAAACAATTATCATCCCCAATTATATTGTTTG
TATGTACAATTTTTATATTTCCAACATAAGTTATTTTTATATTTTTGGAT
AAGCAACATAAGTTATTTAACTATTATATTTTTTGTATTATTACGCGAAA
ACATATTATTATGTCATTCACATGTTTGAAAATGTTATTAATCAAATATT
ATTATTATTCATAATCACTCAGAAATTTTAGTTATTCGGATTTGTTCATA
GAACAGCTTTGATTTCAATGTTTTTGTTCATCTGGATTATCGGTTATTTA
TTTAATACATTGAAGAGATGTGGGTGGTTGCTGTGGGCTTGGTGATATGG
TGTAGGGGATATTGATTTGTGCTCCAACATTGTTATCCTGCGTGAATACT
CTTTCTTATGCACATATTGTGAAAAGTAGTGTATCGTGATGGAATCATAT
GATGTTGAAGTTACGTCTACACGTAATTTATTAACACTTTTATCTTGGGT
CCAGGGCTGTGGACAACTTTGCTTAAAACTCTTCCACTTGCAAGCCACGA
AAGCTGTGCAGCAATGGAGTTCTACCACAACCAACTGAAGCTAAGATTAT
ATAATGAGAAAGAGCCTAATGTGTATTCCCGAGCTGACTGGTTGATCGAT
AAGCTAAATACTAAAGTGCATTCCTACTTCTGGCTTGACGAGTATTCAGA
GAAGGATGACTTTGCACGTTACAGGAAGGATGAGTGGTTGAGTGGTCTCA
CAGCTTGGCGCAAATCCTTAAATATTCCGGACTCGTGTGTTCTTTTAGAT
GGTAAAATTGCAAAGGTTTTTGATCAAGAAGATCGAGATAAGTTTCATAC
TGTATGGAACCCGGGCTCTGAGTTTGGAATCTGTGATTGCCAATTGGCAG
ATTTGGGCAACCTGTGTGAACATGTACTGAAAGTTATCAGAGTACTTTAT
GATAGAGGGCATACTATGTCATCAGCTAGCATGTCGAAGTACAGTGAGGC
ATTGCTTAACCTGCTACGCTGCCCTCATGATTCATTGATCCGTGATCATG
CTGTTTCTTTAGCAGTCTGGGTGCAGAAGCAGTTGGCTGCACAAATAGAT
CCAGAAAACAACCAGATTATGCTGGATCTGCAAGCAGCTGCTGGTGATGT
GGCACATAATACATTTGAGATTAATCATGCACATGAGAACATAGTATCTA
ATATGGAAACTGACCTTATTGGATCTGATGTGTCAAACAGTATTATCAAT
GATTCAGGTGGAGACTTGAATGGTCAAGTAGCTGATGGAAGTGTTGCTAT
TGATCCTTTTGCTGCCGATCCTGACAGATATAGAATAATTGGAAAGAAGC
TTGCCAATGAGAACATATTACCTAACAATGAAAATGGATTGTCAGATTGT
ATTGCTGATGAGTTTAGTGAAGATCTGATGAGAATGGCAGATGACATTGA
CATTTGTGATCCAGAATCCGGCAGAGTAATATCTCATGCAGAGATGGAAG
TTGATCCGACATCCAACTGTTCTTCTGCATCTGGATTAATTACCAGTAAT
GGGATTGCATCTGAGGATATCTTTATAAATGAAGGAAATAGAGCTGTGGG
TGACAAAGGACCTGACGTAACAAAAAATTTTCCTTCAGCAGATGTTATAT
TGGAAAACCTAATGGCTTATGAAAAGGATTTATTGGATAAATATCAAGAA
GGTGTCATGAATGTGGTTTCACAATGTAACATAATCTCCCCCACAGAACT
CGAATCACCAGCTCGAGGCGCAGCTGGTCATCAGACTGGTTTTTGCAATG
ATCAGGCTGAGCCATCAGTCATTCATCAAATAGGAAATGAGAAGCCTGAA
GCAAATTTGACAGAAAAATCTCATGGAAGTATTATGGATGTGGATTCACG
ATTCAACACCAATTCTGGCGCAGCACTCAACTCCTCGTATCAACACAAGG
TACTGCATTAGAATGGTTTGTGCCCATCCCTCAGTACATGAAAAAGGAAA
TGAAGTGACAGAAGTGCCATCCAGTTGACTTGCATCTTGTTGATGGTATC
AAAGCTTCAGATCCAATGAGAGGCTTTCAAGTGAGAACTATTCAGCGTTT
TATAGCAAGGCTAGATTCTCAAATGGGGAGGGAATGCAAGTTCTATATGA
TCCTAACCCTCCCTCTCCCCCTACCGTCTTTTAACAATTTGGTGCAGTCT
TTTGCAAATGAATTTGAAGAATGGTGAACTGTGAGCTCTGGTCAGAGCCT
CAGAGGTTATGGTGTTTAGCAGTCTCAGCAGACAAAAGCCCGTCGCTGAG
CTGAAATTCATGGAAACTGGTACCTCCGGAAATACTATGTTCACTTGTCT
TTATCATTAAATTGAATTCGAAAGGGTCACACAGACATATTCAAAACTTA
AGATGTCAGAATCACACAAGTTGACGTGAGGGGGTTGGCAGAAATGTTAC
CAGTTCTGTTTTGTCTCGTTTCTTGGAAAATTGATATATATGTTTGATGA
ATGTGTACATCCGATTCATGTTTTAAATATAGCCATGAACATACCACATA
CCAAGTGATTTCATTGTGTCCTAAATATATATGTAGTGTACCCTTTGGCT
GAGTTATTGTGCAATAATGTACCTTACAATTCAACTCCGGGCACCCGCTG
CACCTGGTGGATGCAGGGTAGAGATTTGAATGCCCGAGTATATATTGACA
ACATGATGCAGGTACAAAAAAATTTTGCAAAGCATTTCAAAGTTCTTAGG
GATAATTGTATATTGATATTACATTGATTGTAACACAACCTTCGCCAGAT
CAATCATGCATGCATGCATGCATGCATGAAGAACTCGAACTTGACCATCG
TCTCCGGGCACCTTTTCAATCTCTCTAAAAACCGTAGGCAAACTTGTGAC
ATTTGTCGTTTATCCAACGAACCCCTCTCCTCCAACACGTCTTAACTTTC
CCTTCCATGTCGTAAAATTTGTACTTGATGACCCGCTTTCTTCTCTTCAT
GTCGCAAGGTTCCAGCCATGAATATTTGGTTTTCTTAGATTTTGCAGGTT
TTTTCTTGGTGTTATGCATAATGTTATGGAGTGCTGGTGTTGGCATCGAA
CGATCTGGAAAAGGGTTGGATCGTACAACGAAAACATTGCTCCCATTGTA
AGGCTTTCCATCATTGATGTAAATGCTCTTCTCAGCAGTGGTTTTATATG
CCCGATGAACCATATTGTTATCTTCGCTTACTCTCATCTGTGCCGCGGGG
TTGACGGACAAGGGGAGGAGAAGGGCTTGAAGGAGAAACGGAAGAGAAGA
AGCTTGATGTTTAGTTCTGGTGGTTATGGCTATTTGTATCATGAATGTGG
AGGCACTGGACGGCAAGTAATTTTAGAAGGGAGGCTGAGAATGTTATGCC
ATATTGGCAATGCTGGTTATTTTGTAGATTTAAGAAAAAAAAATTAAATT
AACACACCCGTCTGCCAAATCACATGAATTATTATGACATGACCTTAAGG
TGGTGATTTTTATTTTCCAAAGTAGAAAATAATTTTCAGAAAATACTGTG
ATTCGGTCCCTTTTCAAAAAATAATTAACTAAAAATTAAATATTTAGAAA
CGAAAAATAGAAAAATGAAAATACAAATAGAGTATATTGTCAAAAACTAG
CTATTGATATATTAGAATTTTGTATATTAATGTACAAAATATAACTTCAT
TTTTTTAAAATATAGGAAAATACAAATATTCCTTTCATCTTCAACTCACC
ACATTTACCCTGAACATTCCAAGAAACACACTTGTTGTCTCCAGATGTTT
ACTCCTATGAAGGAAAAAAGAACACAATCCAACCTCACTTTCCCAGAATG
CAGGATGGACAATGACAGTACCTTCGGATACTGCCCCTTCGATCGTGGCA
AAACCCGCACGGATTTATTTTTCAAAATACAATAAATGGATATGTAATTA
TGTACATACAAATATGCATGCACACATGCATTCATGACTTTGCTGTGAAA
TTCAGCTTCATGGGGTCTTCTCACTGAACCCCTCCACGCGCTTGTGTTCT
TCCACTGTGTTGTTTGCACCTTCCATCTACCTTCCTGTCAAGGTCCCTTT
CTTCTTCTTTATGCTCCATTTTGTTTCATTAAATTGCATTATCAATTTTC
TAACTGCTTATCCATATATTTTATGCATAGATTCTGTGTGTACTCGTTGG
GTACCTTGATTTCCATCATTACGCGCTTATTTAAATTATTATACCTGATT
TATTTAATGGTGTTTGTACTTGTTAAATTTTTGTTTATGATGCAATCTAT
GCACTTTTCAACATTTTTGTTGATTCCAAATAGTGAGATATTGTTAAACT
ATAAAAGGGTTGTACTTAATTTTGATAATGATGCTGAAAATTCTCGCGAC
TTTCTTCATTTTGGGAATTTGTGTGTAAAGTAACTGGAAGCTCCTATGTG
CTTTCCTCAATTGGGGGTTTTGTCATTTCATAGCTGTTTCTGTTTTTGGT
TGGACATTCTTAGTGAGCTTTATAAGTGAGGGGTTTGGTTGTTTTGGGTT
ACTTGTTATCGTTAGTTTTTGATCAACTGATATTTCTTGAGCTTGTTAAT
TATAGTTGGTTTGTTGTTGTTTTGTGATGGTTCCACCGAAACGACCTTCT
GATGTGCAGGGTGATGACGAGTCTGATGTTCCTCGACATGATCCTAGACA
ACGGGTACCAATGGCAAGGTAGGCTGTCGGTTTTGAATATTTGGTTTATC
GTTTTTTATGTTTGTTCCTTTTCAGTTAAGTATGAGGGCATGTTTTATGT
GCAGTATATTGGGAGATGTTATGAGGGGAGTATCACAGCATGAAATGGAG
ACAACTCTGGAACCTTTTATTCGTAGAGTGGTAAGATTTGTATATGCTTT
CGAAGTTGAGGCTTATATTTCTGTTCTAGCAACATCGTTTTGGTCTCTAT
CATTCATAGTTTGCGAACTTTTCATTTAGACGGGTTTTAAGTTTATGCTT
TCTGTACCTCACTTCTTCCGAATAATGTTCATGTTTGGATCTCATAAAAT
TTTTTGAAGTCTTTAATGGAACAGTGTTTTAGTTGTCTGAGAAGCGACCA
AAGAGCTACGCTTCCTGACTCTTTGAACATTCTTAACCGCTTATGAATGC
CAAAATAAATACCTCATAGTGGCACGACCGCATGAGTGCCTATATCTGCC
TATTTATGCTCAACTCTCTCAGTCCCCTCCCCCCGCCATCTCCGCTTCCA
CATATATTTGTATGCGTATATGTTATTCAGAATTTGGACTTTTTGAAAGT
ACAATGATACCCGAAGTTCACTAATTATNAAAGTACAATGATACCCGAAG
TTCACTAATTATAAAAAAAAAAAAAAAAGTTTCCTGTGCGTACTAGTTTA
AATTCTTTTTATCATGATGCCTCGGTTCACTTTCTGAACTAAAAAATACA
GTTGTATTGTCGTATACATTCACCTTTTCATACCCTTTGATATTGTTACT
TTACTATATTGAGCACTTCATTAACTTGAGGCTGGAATTTGGAAGTGGTG
ACTTTTTGTGGATGATTATATCCGATTTTATGCATATACTCCATAAAGAA
GAAACCAAAGACATATAAAACATGCCTTTTCTACTCAAAATGTCGTAATG
ATTTCATTGTTTGTTTCTAGGTGCGGGATGAGGTACAACTCGCAATTCAA
CACTTTTATCACTCATCTACAAGGTTTGGGTTAACTCTCTGATGATCTTT
TGAATATTAGGTCGTCTCAATATGTAGAATCAAACTATATATGATTATGA
TCTTTATGAGATTGGTCAATGTGATGATTGTCTCTTGGCTTGAAACGTAG
CTAATCGTAAATGCCTAAAGGTTTATAAGTTTTAATCATAATTTTCTTTA
TGAAAAATTGGTTGGATTATATTTCTATAGTCTTATCCTATCTCACTTGA
GGAAGACCCAACTCTTGACTTTGAATTGGCCCTCTTCATCCCATCAACAT
CTCCTTTCTATATTTCATATATTAATTTCTTTTGTCAATTGAATACCCTT
AAGAAGATTTGAATAGTTTTCAAAACCATAGCAGGTTATTTATTTACTTA
TGCGACTTTGCAGTTAGCAATTTTTAGATGCACAGGACAACTATAAATCT
GAGCTTTTAAGAAGAAGAAAATAATAATAAATAGTGAAGAAATTAAATAC
AAATTATGAAGAAAATTAAAACAATACGAATAAGTTTTACAGTTTTGGCT
TCCATGTCACTGCAGATCAAGGGTTTGGCAATTGGACTTTCAGCATATGT
TTCCCAATAAATTTTTTACTTGCACCAAGGTTGTTTCGGTGGATGGTGAA
CCTATCAAAGTAGTTCTAGTGGACCCCAGCTCCAGAAAGACAATTACTTC
GGGACCTTTATCTTCAAGGAAGATTGAAATTGTCGTTCTTAATGGTGAAT
TTGTTGCTGATGAAAGAGAGAACTGGAGTGAGGAGGATTTTAATCGCAGT
ATCATAACAGAAAGAAAAGGAAAAAGACCGTTGGTGACAGGGGATCTTAT
AATAACCTTAAAGGATGGAGTTGCTGATCTGGACAACATCTGCTTTACTG
ATAATTCATGTTGGATGAGATGCAGGAAGTTTAGGTTAGGGGCAAGATTG
CAAGGGGGTTCCGCTGAAGTCAGAGAAGCAAGAAGCGAAGCCTTTGTTGT
TAAGGATCATCGTGGGGAAGGTAATTTCTTTTTTTTTGCTAGAATGTTTT
ATTATGTTATTCAGACTTGATTTCCAGTTTATCTTTTGTTCTGATGTCTT
AACTTCAGTTTAAAGCATATTGTGGTTTCTTGTTCCCGTTTTATGACAAA
ATTGGAGGATGTGTTTATGCGATAACATTTCTGTGCTTGCACTATATTGG
CCAACTAGTATTATAAATTAAGGGTAAAGGAAACCCAATGATTATTTTTG
AAACTAACTGGTTTTTCATCCAGCATACAAGAAGCACCACCCTCCATTAT
TAGATGATGAAGTGTGGCGTATGGAAAAAATAGCAAAAGATGGTGAGTAC
CATAAGCGATTAGTGGCGCTTGCTGGAATATCCACAGTGAAAGAATTTCT
TCAAATGTATGTCACTGATCCTTCCTCGCTGCGCAAAGTAAGATTTCTGT
TGTACTATCACATTTCAGATTCTATGATTGACATTTAATTTAACTTCTAA
TAAGTATTAGTGTCCTTGTACCATAAACTATATAGGTAATTGGTGGTGAC
AGTGGCATTTCAAACAAAATCTGGGACAAAATCATCGAGCACGCTACAAC
TTGTGTTCTAGATGATAAGATGTACCTGTATACCGGAGCTGCACATAGGG
TTATGCTCGTGTTCAATTCCATCTGGAAGGTTATAGGAGCAACCTTTGAC
GGGCAAAATTACCAAAATCTGGAAACTCTAAGCTTTGCTCAAATGGTGCG
TGCTTTAATCTTGATAACATGAACTAGAAACTTACATGTGTGCCTTCCTA
TTAGCAAGTCCTTACTCTAAATCAACTCCTTGTAAACTGCATATTCAAAG
CGTCTTTTTTTTTTTGTGTGCTTTATCTAGTAAACAAGCAACACTCCCCT
TTGTCATTTAGGCTTTTTAATTTATCTCATTTGCTTCTATTAGTGAATCT
AGTGTCCAGTTGCTTCAAAAAAATGAATGGGTGAGTAATATAAGACCTCT
GAAGTTTGAACCTCTTTTTTTATATTATTATTGTTATTGTTATTATTGTT
ATTATTATTTTGTCCTGATGAACAAATCGCTCTGATGGAAATTTGACAGC
GGTTGGTAGAAGAAGTGAAACAGCAGGCCTACGAAAATTTAGATGATTTG
GTGCCATTAAGTGAACAGCCTTTTATCGACCCTGTAACACTACTGCCAGG
CCTTCATGAACCTTTTTACAGTTGTAGCTCTATACTAGATGCGAACAACC
CAGTTGCAGATCAAGGTATAGGAATTGGAAACTATCAAGGCTTACCTTTT
CAGTTCTGATCTCATTTACTATTTTATGCTGAAACAAGTTTAATTGTTTA
TTCAAGTAGTCAATTATTTGTAGTTTTTCTCTTCTCTATACCCAAAATTT
ACGAACAATTTCTTTACCAAGGCCATGTTCATGTGACAACTTCGACACAA
TATGCTTTTGAACCGGGTAATGGAGGTTCCTTGGAAGTTTCCCGGACAAA
TAACTGTCATCAGGTGCAGGCATTATGTCCTACTTTAGTAAACAGTTTCG
AGATGAAAGATATTGGCTACGGAC
Sequence Length:
12224
Sequence Checksum:
9b7c73e4e5ace8fa9c219b4301af8e0f
View location in JBrowse:
Cds:
>DCAR_029365cds ATGGCCAGATGGGATGAAATCATGTCCCTTCCCGTGCAGAACCCTCCTAT CTTGGAGTTTTCCTCTTCTGATCTTGTGTGGTCGAAGGTGGAGGGTTGGC GTGACAACATAGATAGAGTAGCTCGAATTCCCTTTGCCAGAGTAGACAAT TTTCTGACCGGTGAAGCCTCTAGAAAAGATTGCCCGACAAAATTTCACCG CGAGGCAAGGAGGGTGCGCCCACCTGAGACGGCCTACAAGCCCAAAGTTG ACGGAGTTCTTGAATACATTCTCTATTGGTGCTCTTTTGGACCTGATGAC CATCGAAAAGGTGGCATTGTTAGACCTAGTAGAAAATCGTATGTCACCAA AAAGAAATCTGCTGGGCGTCCGAACACTAAGAGAGGCTGTACATGTCATT TCATTGTGAAGCGTTTAATGGCTGAACCATCAGTAGCACTCATTATATAT AACCAAGACAAGCACATTGATAAGAAAGGTTCACCATGCCATGGCCCACA GGACAAAAAAGCTGCTGGAACTCGTGCAATGTATGCTCCTTGCATCTCGG AAGACCTTCGGCTTCGTGTCTTGTCCCTTCTACATGTTGGGGTCTCAGTA GAAACAATAATGCAGCGACACAATGAATGTGTGGAGAAACAAGGAGGTCC AAGTAATCGTGATGATCTTTTAAATCACAGGTTTGTTCGCAGGCAAGAGA GGAGTATAAGACGTTCAACATACGAACTTGATGTGGATGACGCAGTGAGC ATGAGCTTGTGGGTCGAAAGCCATCAGAACCAAGTTTTCTTTTATGAAGA TTTCTCTGTTTCTAGTCCATTCACTTTAGGTATTCAGACAGAGTGGCAGT TGCAACAAATGATTCGATTTGGTAATTGCCGGCTTCTTGCTTCTGATTCT AGGTTTGGAACACACAAGTTAAAGTACCCAGTCCATAGTCTGGTTGTATT CAACTCAGACAACAAGGCAATACCAGTTGCCTGGATAATAGCACCAAAAT TTGCAAGCACAGATGCACACAGATGGATGAGGGCTCTTTACAACAGGGTT TGCACGAAAGACCCTACATGGAGACTTGCTGGTTTCATTGTGGATGATCC TTTGATTGACGTCTCTGCGATCAGGGAAGTGTTCCAGTGCTCTGTTTTGA TTTGCTTATGGAGGGTACGTCATGCATGGCATAAAAACTTGATGAAGAAA TGTCCAGAAATCGAGATGCGTGCTGAAATATCAAGACTGCTGAGTCAGTC GGTGCAAAAAATCTGCAGAGGATCCGGAACTGTGGGGTTGTTTGAAGATG TCATGGAAGATTTTGTTGATGCCTCAGAATTTGTAGATTACTTCAAGGCA GTTTGGTACCCCAGGATAGGGCTGTGGACAACTTTGCTTAAAACTCTTCC ACTTGCAAGCCACGAAAGCTGTGCAGCAATGGAGTTCTACCACAACCAAC TGAAGCTAAGATTATATAATGAGAAAGAGCCTAATGTGTATTCCCGAGCT GACTGGTTGATCGATAAGCTAAATACTAAAGTGCATTCCTACTTCTGGCT TGACGAGTATTCAGAGAAGGATGACTTTGCACGTTACAGGAAGGATGAGT GGTTGAGTGGTCTCACAGCTTGGCGCAAATCCTTAAATATTCCGGACTCG TGTGTTCTTTTAGATGGTAAAATTGCAAAGGTTTTTGATCAAGAAGATCG AGATAAGTTTCATACTGTATGGAACCCGGGCTCTGAGTTTGGAATCTGTG ATTGCCAATTGGCAGATTTGGGCAACCTGTGTGAACATGTACTGAAAGTT ATCAGAGTACTTTATGATAGAGGGCATACTATGTCATCAGCTAGCATGTC GAAGTACAGTGAGGCATTGCTTAACCTGCTACGCTGCCCTCATGATTCAT TGATCCGTGATCATGCTGTTTCTTTAGCAGTCTGGGTGCAGAAGCAGTTG GCTGCACAAATAGATCCAGAAAACAACCAGATTATGCTGGATCTGCAAGC AGCTGCTGGTGATGTGGCACATAATACATTTGAGATTAATCATGCACATG AGAACATAGTATCTAATATGGAAACTGACCTTATTGGATCTGATGTGTCA AACAGTATTATCAATGATTCAGGTGGAGACTTGAATGGTCAAGTAGCTGA TGGAAGTGTTGCTATTGATCCTTTTGCTGCCGATCCTGACAGATATAGAA TAATTGGAAAGAAGCTTGCCAATGAGAACATATTACCTAACAATGAAAAT GGATTGTCAGATTGTATTGCTGATGAGTTTAGTGAAGATCTGATGAGAAT GGCAGATGACATTGACATTTGTGATCCAGAATCCGGCAGAGTAATATCTC ATGCAGAGATGGAAGTTGATCCGACATCCAACTGTTCTTCTGCATCTGGA TTAATTACCAGTAATGGGATTGCATCTGAGGATATCTTTATAAATGAAGG AAATAGAGCTGTGGGTGACAAAGGACCTGACGTAACAAAAAATTTTCCTT CAGCAGATGTTATATTGGAAAACCTAATGGCTTATGAAAAGGATTTATTG GATAAATATCAAGAAGGTGTCATGAATGTGGTTTCACAATGTAACATAAT CTCCCCCACAGAACTCGAATCACCAGCTCGAGGCGCAGCTGGTCATCAGA CTGGTTTTTGCAATGATCAGGCTGAGCCATCAGTCATTCATCAAATAGGA AATGAGAAGCCTGAAGCAAATTTGACAGAAAAATCTCATGGAAGTATTAT GGATGTGGATTCACGATTCAACACCAATTCTGGCGCAGCACTCAACTCCT CGTATCAACACAAGGTACTGCATTAG
Pep:
>DCAR_029365pep MARWDEIMSLPVQNPPILEFSSSDLVWSKVEGWRDNIDRVARIPFARVDN FLTGEASRKDCPTKFHREARRVRPPETAYKPKVDGVLEYILYWCSFGPDD HRKGGIVRPSRKSYVTKKKSAGRPNTKRGCTCHFIVKRLMAEPSVALIIY NQDKHIDKKGSPCHGPQDKKAAGTRAMYAPCISEDLRLRVLSLLHVGVSV ETIMQRHNECVEKQGGPSNRDDLLNHRFVRRQERSIRRSTYELDVDDAVS MSLWVESHQNQVFFYEDFSVSSPFTLGIQTEWQLQQMIRFGNCRLLASDS RFGTHKLKYPVHSLVVFNSDNKAIPVAWIIAPKFASTDAHRWMRALYNRV CTKDPTWRLAGFIVDDPLIDVSAIREVFQCSVLICLWRVRHAWHKNLMKK CPEIEMRAEISRLLSQSVQKICRGSGTVGLFEDVMEDFVDASEFVDYFKA VWYPRIGLWTTLLKTLPLASHESCAAMEFYHNQLKLRLYNEKEPNVYSRA DWLIDKLNTKVHSYFWLDEYSEKDDFARYRKDEWLSGLTAWRKSLNIPDS CVLLDGKIAKVFDQEDRDKFHTVWNPGSEFGICDCQLADLGNLCEHVLKV IRVLYDRGHTMSSASMSKYSEALLNLLRCPHDSLIRDHAVSLAVWVQKQL AAQIDPENNQIMLDLQAAAGDVAHNTFEINHAHENIVSNMETDLIGSDVS NSIINDSGGDLNGQVADGSVAIDPFAADPDRYRIIGKKLANENILPNNEN GLSDCIADEFSEDLMRMADDIDICDPESGRVISHAEMEVDPTSNCSSASG LITSNGIASEDIFINEGNRAVGDKGPDVTKNFPSADVILENLMAYEKDLL DKYQEGVMNVVSQCNIISPTELESPARGAAGHQTGFCNDQAEPSVIHQIG NEKPEANLTEKSHGSIMDVDSRFNTNSGAALNSSYQHKVLH*