DCAR_029913

Resource Type: 
Gene
Name: 
DCAR_029913
Identifier: 
DCAR_029913.gene
Locus Tag: 
DCAR_029913
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 2 relationships.
Relationships
The mRNA, DCAR_029913, is a part of gene, DCAR_029913.
The genetic_marker, MK006208 K3652, is located in gene, DCAR_029913.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_029913DCAR_029913.mRNAmRNADCARv2_Chr9:17616011..17627596
Sequence: 
GCCGGGACACAGCAGCCCGTTGTTTTATTTTGACCGTTAGTGGTAAATTT
GGCGACATATTAATGAATTTCTTGGATTTACCCGTACAATGAATCCTCTT
GTTTGAAGCTGTGACCAGAATAATTAGTCTAGCGTATATAAAATTTGGAC
ACCGCCATCTCATAGTCACAGAAAACGAACCCCAAAAAAGACAGCAGGCA
GAGATGGACGAAAATCCCTCAGCGGCAGTGGGCGGAGTAGTAAAAACAAG
TAATAGTAGCTCGATGTGGTCGCGCAGGCCGCCAGTGCGTGTCACGTCTG
AGTTCGACAGTGAGAGCTGCTCCTACTTTCACAAGATTTCCTGCAAATTC
ATGGACAATTTGGCCAAATTGAAGCTCAGTTTTCAAAACAACTCCAAAGG
ACAAGTCAGTGATCCTCATCTCACCATTCTTTCTAAGCATCTCTCTCTTG
ATTATGATGTGGAAGAGCAGAATGCACTTGTTAAGGCCTTCTTTCCTCTT
TCTCCGACTTTGCATCTTCGAGCCACTCGTGATATTAAGGTCGCTCTCTA
ATCTGTTCGATTCTACTCTTTTGTTTCGCAACTTCACTTTCTTTCGATCT
ATTTGTCGTATTTAGTATGACTATATTTATATCTGCTTGCTTCTCTGCTC
GTTGTGATGTTTCTTTGAATTAATTTTCTTGTATTGATGCGTGTGTGTGT
ATTTGTATAGTAGAAAATTTCATTAATTTGAAACATTTCATCCTGCTCTC
GAGTTTCTATACCTGGAACGTCCTACGATTAACTAGTTTTATACTCCCCC
TCTGTCCCATTTAATTATATACGTTTTTTTCCCACTGCTCGACACGCATT
TCAATGTTCTTATAAAATATAGTTCTGTAACTTGTTTATTAAGATTTTCT
TTTTCTGAATAAAAATTTAGATGTTATTTTTTTATTCAGGAGAAAAATCT
TGATAATAAGTTAGAGAACTATACTTTACAGTTTACAAGAGCATTAAAGT
GCTTGACGCTTCCCCGTCCGCCACTGTATACTATCCAGAGGAATGGAGGG
GGTAAAATCATAATATGGGGTCCCTCCCGACATCAGAACTCAAATGAGTT
AATTAAATCAAGACATATGTAATTTAATCATCTACTTTAGGCGCACTTAA
TCTACTTCTTGATAACATATAAGCTTCAAGTCAACTCAACCACGGAATAT
TCCTTTCTGGAGTTCATCTTATAGTCTTGTTGGTCAGATAGGTGAGATAT
AGCGCATGTTTGTGCAATCATATGAGTCCCATATGTGGACTTTGCCTTAT
ATGGATTTTTAGAGTGTTCGGAATATCATTAATGTGGGATTTTATCTCAC
ATATGTGAGATAACCCGCAAGTTGAGAGAACTTAACTTCATTTTTCATTT
TCATCACGGAAAACCTAAAGCAGAGCGCAGGAGGTGCTTCTACGAGTTCC
CACTTCATCATTTTTTTTGTCTTTAAGTCATCCATCTACCAAACCAAGCA
AATAGCTGGATTTTCTTATTGAATCATAAAAAGTTTTGATTGAATCGAAT
TTCTTATCAAGCCCATCCAGTCGAGTTCGATACGGTTACTTTTCATGCTA
AGGGTATGTTTCAGTTTTGATATATGATGGACAATATGTCAACATATGTC
TTAAAATAGTTTCAAATATTAAGTAAAGGTATAGTGATTTTTAGTAGATC
ATTATGATATCAGTAGAACAGGAACACCTCATCGTACCAGTAGCAGCAAA
AGATAATGAGAGTGTTGTTGGCTAATGTCTAGTTTATGTCCACCTAGTTA
TGACTTATGAGTGATCTAGTGTCCCTTCTTTGCTTATATTTGTCTTTGTT
TCTTAAAAATTGATGTCATTTTGGCTTTTTAAAAATTGATGTCAATTTGG
CCAAAGCTTAGTATGCAGCTGGATTTATAATCTAATATCATGTCATCTCC
ACTCTTCTCCCTAGTAGGAAAGAAAGACTATATTATAAGATTTCAAGCCG
ATATTACAGATAAAGATGTATCGCTTTAGTGATATACATGCAATATTTGC
ACTTCAAGCTGTTTCTTCTACTAAATCTCATATATTTTAAATTAGGCACA
ACAAGGAGAATTGGCGGTGGTTGCAGATCTCACTAGTACAGGCTACAAGT
TTGAACTGTCATCTGCTCTTCCATCTGGTGGTCTGGTGAGGAGAGTCTAT
ACCGTTACTCAATATTAGTTGTTTTACACTATGCTTTTCTTTTTTACTAA
TTGAACACGCCCACAGTCACACACTTATTTTACCTTCGACGAGGCTTGAA
CCGCGACCTCGTGCAAAGGGAGTGAGGGTGATATTGCTAAATAAGAGATC
TTTGGTCGCTATTGTTATTTTATAAAAGTTTTTTTCACTTTTCAAGATGT
AATATACAAAACATAATCCCAAATAGACCCTTTCCTATTTACAAAGAACA
TCTCGTACAAAAGAATATTTTTTTTGAAACTAGTACATTGCGTCTCCATA
AGTGTAAAATGACATGTATTTGAAAAACATAGAGTAACAAATAAGATACT
AATATAGGGTCGCGCTCAAGAGAGAACGAATGCTTAAAATAGAACCATAG
AACCACTAAGGTTCTGCTGCAGAACCCTATTTTTTATATAGATTTTCAGG
ATCTAAATCTAAATACATGTTTTTTTGCATTGTTGTGTGTGCTCAAAAGT
AATTTCAAAATATAATACATAAATAAGACATTTTTTCATGTGCAGTTCTG
CTGCAGAACCCTAACTAATACTGTAAATAAACTAATGGTTCTATGGGTTC
TATGTGGAACATGACCCTACTAATATAGATTGACTATCAAGGTTTCTTTT
CAGTGTAAATATCCATTCACTTCTAATAGCTCGTTACAAGAAGGCAAATC
CACTCAATCCCAAGTGCCATTATCATATAAGGCATTCATTTCCTCCGCCA
GTTAGAATCATATAATTCTTCTTGGACAGATTTGGGGTTGGTTACACATT
AATGGTAGCTACAAAGTAACGAGAAAATTGTGACAAATGATCATATGATA
CAAAAGTAGAGTTGAGATAGTGCATTGACGTTTACCTTTGATTAAGCAAT
TGGAAGATTGTCAGTTGAAACTGAAGCAGCTGGGATCAAAATTAGTGTCA
GTTTCTAGTGTAGGTGTTGAATAATACATGAGTGAAGTATGTGATAAGGT
AGAAACTAACAATTGGTCAACCGAAGTTTAAAAGAATGAAGTGTGCCACT
GTGCTATAAAAAAGTGACATTTTGCGGATGAAGTATCCATGTAGAGTTTG
ACTTGGAATATCTTAATAAACTCATATCAATGACTCAAAGTCCAACTTAG
TTGCAGATGATGAAAGTTTCTTACAAATCAAACCAAAATCTGAGGTTCAA
TGGGATACAATGACTTGTTCAGGAATAAAATATGAAAAGGAGGTTCACCC
TGGAGAATCGATGGAGGCATACGATAAATTAAAAACCATGATGTATAAAC
TGCATCAGCCTACAACCTAAAAAGATTTAGGCACAACCATTTAAGATAGT
AATGATTTTCCAGTCTCAAGTGTCTATATTGCATTCTGCTACCCAGTTTT
GAGATGGTGTATCGACAAATAAAGTTTGTTTGATACTACCATTTTTAGCC
ATGTAGATTTTGGCAAGTATTCTTTTGTATTATCACTCTCTAAAGTCTGT
ACACATAGAGGCAGTAAAATGAGTTGTAATTTCAGCATAAAAGAGACAAA
AGGTAAAGATCAACTCAAATCGATTTTTCATTAAAAACAACTGTCATTCA
GAAGTAATCATCAACAAATGTTATAAAATATTTAAAATCTGACTTTGATA
ATACAGCACAAGGACCCCAAACATTCAAGTGAACTAAATCTAGGACTAGA
ACTAACATGCTGATGTTTAGCAAAGTGATATGACTCGCACTCTAAAATTG
AGATGTTTGAGTTCCCAGGGCAAAGTTTCTCGAGGTGAAGAAGAGATGAG
TGACCCAGTTGACAATGTGTTTTATGTGTTTTGAGTGAGGAAGTAGAACT
AGAACAGGTAATGGATTGGTGTAGTGAGTATTCAAGAAAATGATGAGACA
TGACAATTAGGCATGTATATGGGTTACCTGAATTGGGTAGACTAGCGTAA
GGAGTTGATGAAAGCTTGAAAGGGTCCTGATATTGTGAAGACTTGATGAA
ATTATCTGCAGAGTTTAGAACTGTTTGGACAGAAGTATCTTGCATTGGCA
ACATGGCCATTGGGAGTCCTCTCTGGGTGTTTCCGGTTTTCATTTAGAAG
CTTTTCTACAATCATGCATCACATCCCCTGGTTTATTACCATTATGGCAT
ACAATGCCCCTAGAATTCGATGATCGAGCGGCAGTACTGTATCTTTGAGT
AAAGTGTCCAGAGACTCACTACTATGCCTACTAATCAGAGCACTTGTATG
TTGAGATGGTGACACTTTGTGTGAATTATTTTGCTAAATTCATCATGCAG
AGACCTGCAAGGAAACTTATAACTGTCAGTTTATGTTATTTTTCTTGTTC
TACTTTCACATGAGGACTATATGGAGCATAATATTCAATTCCTCGTATAT
CTTTTTGAAATCCATAAAATATGTCATGAGAGAGTTATCATGTTTCTCAG
CATGATTAAAGTGTTATTGCATGGATAAATTCAAGATGCATTCCCTTTTC
CAGGATACAAAAACTCCAGATAATCAATTAATTCTTTGACGAAGTCATAG
TGATTGATAAAGCTTATTACTGTGTTATCAATGGAGTGACGGATTGGCAA
AATAATCGAGTATCATCTTTTATCCTTTCCTGTCTCGAATCATCTTTGGA
GGATCTTCTGTTAAATGACCATCTTTCCTTGTACCACGTAAATACAAGCA
TATAGTTGTTCCAGTTAGAAAAATTAGATATATCAATCCATTTGTGATTA
GTTATATTTGAAATAATAGGGACAACCTCATCAGTATTTATGGAAGTAAC
TGAGGCAATGTCAGCAGTGGCTGCTGAAAATTTTTGATCACCCATACTAT
GCCCAAAATATAATTGAGTCTCTGCGAAGATCACAACCTGAAACTTGTTG
CAGAATCAGTGTCCGATGCCTGCAAGGGCTTCATTTTTTAAGCTTTTCAT
TCCATCTGTTCCTGAATAGCTTCTTTCAAAAGGGCTAGGCGGGGTAGGAT
AATTGATAAAGGGATTTGGATAGCAAAACCCAAAAGAACACAGTTTCCGA
ACAAACTCAATATCTCACTCTGATCCTGATTCACTGATGCTCTTATACCA
TGACAGAAAGTAATTAGGTATCGTGAAGAGTAAACAAGTTTTGCGAAATA
TTTATGCAGGTTCAAGGAAACCAGAATATGATAACATAAAGAAGTGACTC
AATCTAATTTCTATAATTATTTTAACTCCTGAAATCATGATAATATTCAG
CTGTTAATTAACAGCATAAACAACTATTTTTTAACAGCATATGCATATGT
TAACACAACCCTTTGCATCTTTTCGTCAAAAACTTGCGGATTATGATGAC
ACCATGTAAGCTGGTGCATTGGACTCCTGGTTGCAGCTTATACTCTTAAT
TTCTGCCTTGACCAAACAACCATAGTTAGCTATTAAAATCCTATAACGAA
ACCTATCACGAGTTGCTCTTAAATGTTTAAAATATTGCACCAGTCATAAA
TATATTATGTATCTTCTAAAATTGCCTCTATTATTTGATGTTAATAGTTT
TCTTCATGCTGCAAGCAATGCGAACATTTACGGTGCAAAGATACATAACC
AAGGTTGCATTTGCATGCACTGCTTTTATGCATGGGTGCTTCTACCCCAA
CAATTGTATTTCTTGTAATTCCCCTATATCCTCTTCCTTTACTTCTGCAG
CCAAGAGCAAGCTTAAGATTTCCCCTTGGTGAAGTTTCATTGGAAGAAAA
GGAAGAAGACAAAGATCATGTGAAGAAAATGTTATCGATAAATGGAATTC
TCAAGGGTCAACTTTTGAAAGGAGTTTGCACGGCTATATACAGGGATGAG
AAATTGAACATGAGATACTCATATAAGGTTTATCTGGAAATTATTTATTA
ATTAAATTTCCTGATTTTAATGTGTTAAAACTTTTATCTTTTACTTGGAG
CCATTGAGTTGCTCAACTGCATCATAAGAATCTGGGTCTCCGTCTCTCAG
TTGGTATCTGTTTCTTTTGTTGCACATGTAGTTTAATTTTTTTTTTTTTT
TTTTCAGGATGAACAAATGTCTTTCATTCCAAGCATTTCTCTTCCTTCAA
ATACGCTTTCACTTGCATTCAAACGCCAATATAGTCCTTCAGACAAGTTG
AGGTGTGCTCTCTTTTCTCCCCCTTGCACAATATTTAATCAACATGCTCC
TTCCAATAAGAATGCAATTTTCAAAATTTTGATATTGCATCTCTAAGCAA
CCCCCAGAAGTTTGGTGAACTCTTCTCTAATGCTGTTACTATGATGGCAT
TTACATTTGAAGAAAAGTTATCTTAATCAGCATGCTCCTTCCTATAGCAA
TGCAAAATTGAAATTTTTATTTTGCACGTCAAAGCATTCTGCAGTTTAAC
GAACTCTTTTGGATGGTACCTAAATCGAGTAGTTGATTTGAATTTGCTCT
TATATACAACTTTATCATTTAGTCAGCAGCTAAGCTGCAACAAGGAGATA
CAGGGTCAATGTCCATAAAGTCAAAAGGTGGTAAAAGGTGAACAAAGCAA
ACATCTACTAAGGTATGAAGATTTTAAAAAATGAAGGTACGGAGAACCCT
TCTTTAAGGTGGGAGTTGTTTAACTATTAATCAATTAAACAACACTGAAT
AGAGATTCACACCAAAATAAGATGAAATACAAGAGTTCGAGCAACATTTA
GCTGACAATTCTTTCATTTAGCCACACTGTTCAGTTGTGGTGTTAAAGGT
GGAAAACATTGTTGTACGAAGCAAAAAATTGAAATTCATGAAACGCGTAT
TTACCACCTGAATTACATTGCAAACTTTTGATTTGTGCATAAAATTGTTT
TTCAATTATAACAAGAACAGTATTAAACACATGAGAAACCTTACTTTTAG
ATCCAGGAAACCCAAGCAAGTCGAGTGAAATAATCAATTAACGTAACAAC
CATATGTTGTTGATGAGAATTACATCATTACCGTTAAACCTTTATAAAGT
AATAACGTTGGGACCAAGACAAAAATATTATACACCATCTACATAATGTT
GGGGCTAGAAAAAAATATCACTCTAGTGAGCTTATTATTTTATCGATTAT
TACTTATTCGAGGTTCAACTGTATGTACGAGTTAATAATCTTTAGTAATA
GATAATATCATCATTAGAATATTTACGTCATATGTTTTATACATTATTTT
TGAACATATGCTTTATTTTATATTTTATACGACGTCTTTAAACATATGTT
GTTCTGTGATATGATTATTACGTTCAATATCATATTTTTTTGCAACCACA
CTCAATTGTTTCCCAATCATCACTATTCACTAATATGCACATATTAACAC
CCAATGGGGAAACATGAGGCTAAGTTCCCCGAATTATTCTGGTTAACAAT
TGCTTCCAAAATCTTAGCATAGGGTGTGCATTGTAGATACCTTGGTGTAT
ATGAAAATGATGTGAATTATATGTTCTTCATAATACCCTCTTGAAGTTTA
GAAAACAAAATGCACGTATATCATAATTTTTTGCAACCACACTCAATTGT
TTCCCAATCATCACTAATATGTACATATCAACACCCAATGGGGAAAGTTC
CCCGAGTTCTTCTGGTTAATAACTACTTCCAAAATCTTAGCATAGTGTGT
GTATTGCAAATATATTGGTGTATAAAAATGATATGGATTTTATGTCCTTC
ATAATACCCTCTTGAAGTTTAGAAAACAAAATGCACAAATATTTGAGAGG
AATGCGAACAATCCAGAAATGTAATTTTTGAATCTCAAACTAGATCAAAG
CGGAAACGAGGTAATTTGAATCTAACCCTCAAATGAATTTATTAATTGAA
CTTTAGAAGGGAAAAACTAATCATATTATATTCTTAAAACAAAATCGTAT
ATCATAACTCATTAATTATCCAAACGGATTATAAGATATGAATATGTATA
ACATACCATACCATACGTACTCAGTATATCCCGCTTAGAGCAGGGTCTGA
GGAGGGTAAAATGTACGCAGCCCTGCCCCTACCCTTAAAGTAGAGAGACT
GTTTCCGTGAAGACCTCCGGCTTAGTGCACCATAAATTAAAATAGTGTGT
GATATCATATGATTATAATACCTTAGGTCATGGCCTTATTCACGTGAGAC
TTACCTAAACATTCTCGTGAAGTCATTCTCGCGAAGTCCGATGGAGGAAA
CAAATGGAGGAGAAGAAAGATTGGTGCAAACCAAACTGGAGCATAAAACC
TTGAAAACTTACAACAATCACATACGGAAATTATCTATCTTTGACGTTTT
GACGTGCTTCGTGTTGAACAGATTAGCACTGGTTGGGAGGAGTGCAACTA
TCCATGATACAACCAGAACCCATGATTTAAACCGCCAGAACCCAAACAGT
ACTTATACGTCACATCGTATACACAGAACCCGGATAATTACATAACAAAT
GAACTTGGAGCGATGTTACTTCGTCTTAGGATTGCCTTCTATGAAAGGGA
TGATCAAGTGCAAATTCCGATCCGATCCATATGTTTTTCTTAATTCTCAA
CAAACCAAAAGTATTCTGTTTTGGACTCGAAAGTATGAATGCAAGATCCG
TTGAGGAAGACGGATGACGCCACATGCTCCAAAACCTAAACCTCATATGA
ATCTAAAAGAAATTCGAAACCACCAAGGAGTTGGCTAATATTTGATCCAA
TGTAGGAAACCATTACTTAGAAAGCTTAATCCAACTAGATAATACATAAA
ACCAAATCCAAATCCAAATAGAAAAATAAAAATCTAATGTTGTGTTTGGT
TGGGGAGAATGGAATGGAATATAATAGAATGAGTAGAACTTAATGAAAAT
AATGGAGGTGGGAGCCTAGGAGGGAAGATTTAAAAAAAAATTGAATAAGT
GCAATTCTTATAATGAGATTTAAGAAGAAAATTGGTTTATTCCTTCTCAG
ATTGTGGGGCTTGGTCTCTAGGTTAGGGTGCTATAAATGGAATTGAGGAA
GGAATGCAATATTTGAATATTTGTCCATAATATAGTTGAATTATTATTCT
GTTCCTTCCAAATTGATTAACCTCAACCAAACACAACGTAAGTACTTACA
AACATGAAAAATCTTTCATCCGAAAGGTAAAAATTTTTGCAGACTAGATA
TCTACTTAAAAAGTATAATTATTATATAATAATCATCCCGGGACAATAAA
TCAGCATACAGGACCTCTTGCCCACGAGATGTCTTTTATTTTTACACAAG
ACATCTTGCCACTCGTATCCTTTTCTTCTCACATTTTGTGACTTGTGAGC
TTGTCTTCTTCTAAGACCCAGATTCATCCCTTTTGAGTATGAATATTCGA
AGACACATCCCTTAGATTGACTGCTGTACTACTTCCCTACTCCCCAATTA
ATATAAAATAAAATATGCACCAGTTAATATATTGAATCCTTGAGAAAACC
CTAAACTCTTCTCATCCTCGAGGAAATATGCTTTTTCTTGACAGAGCCTC
CTTCTGAAATCTAAATTCTAGCATGGTAATACTTGATTGGGTAGAACAAA
TACATGGAATTAGGTTTTTGAAGAAATGATTTGGATGCAGCAATCAGTTG
GTTAAGGATTTGTAGGGAATTATATGGGTGCACAATCAAAGAGGTACATC
TATTGAACAGATTAATTTTTTTCTTTAAAAAAAAAGCTTTAGTTCTTAGT
TGATAATAGCAGAAGGTGCTCCATTCAAGGTTTGCAATTTTTTTTCATTC
CATGTATGTTATGCTTCTTCTTGCTTCTGTGACACCTTCATGGCTAGCCA
TGATCAAGGAAAGTGGGGGTGGGACAAAAGAAAGGACAGAGAGGTAACAG
ATCTGAGGAAGGAACAAGGTCATGAACAGCCGTACAAGGATTCGGAACTG
ATGAAGGTGGAAATAGGCGGAAATTGGAGCTGAAACAAAAAAGTCTGCTG
CCTGCAGTGTTACTTCTGACAGAATTTGTCTGAAGCACTTGAATTGCTTA
AAACAATAATGAGACAGGCCATGAAAGTGTCAGATTTAAAATAAAGCAAC
TATCTTCCTAAAAGATAATACGACTTGTTATTGGAATTGATATTGCTTCT
TGTTTATTATTGGACTGGACAATGAGATTACCAGTCTAGATGATCTAATT
TATTATAACATTTGATTCACAGTTATTTCTACAACTTCAATTCAAACTTC
TGGAGTGTTGTATATAAGCACAAAGTGGGGAAGGACTACAAATTTAAAGC
TGGTTACGATTCGGAGGTTCAACTTGGTTGGGCATCCTTTTGGGTAATAT
TCTTTATGTTTGATTTTTAGTTAAGTTTGAGTATTTCACTAGTTTATAAA
TCTACTTATTGATATAAATGTAGTGTAATATTTATATATCACAGTTCATT
CCAGATTTAAAATATTTTCATAATGACTTGATCATAATCTGAAAAAAAAA
GAATTCCTTGTTTGTCTCTATTTAATAATATCATTTTGAATTGTGATTTG
TAGATGTTTCATCTCTTTTGTGTGTTTGTATGTTAGCGTGTTTTGGTTTT
GGATTAAGTCGCTACTTATATGTTTTACATGTGTTTGTTTGTTTGGAGAA
ACGGACTAATATGTCGCTTTTTAATTGTGAATGGCCCTCAATGTCAAAAC
TCAGTGAGATGGCCCTTATTGTCCCCAACAAATGAAAAGTTATATTGCGT
TGACATGTCAATACAGTTTTTGCATCACATGACAATGGACGACCCTCCAG
TAAAAGGAGTATTCATTTGGAGGCCCACCCTGTCCTCTCTCCTCAAGCAA
ATCTCCTTTGGCAACATCGACGACCTTTTCTTTGGTACCGTCTCTTTCAA
CCCAGACCCAAATCCCACCCCAAACCCCACTTTTGCAGCTCTGCTTATTC
TTTTTGTTTTTTTCAAACTCCCACCGTCAGTGCTGCCTTCAAACTCGACT
GACAGGTGTTCTAGTCATAAACATATCTTTACCATGCTCTTTTTAACCAT
AAAATATGCAACTCATGGACTTGCGTTTTCTTTTCCAACAAGGTATATAA
ATATGCGTCTCTGGACATGAACATAACTTTTAATTTTTTTGCCTAAAGTT
CAGTAACGAATATACACCACCAACATGGTTTTGTCTGAACATGAGGGAGA
GGACGCCTCTTTATTTTGCATTTCTGCAGCAAACATTTCTAGAAATGGGA
CACGCCTATGCATTTATCATTCTGATACACGTAGGATCATGTTGCGTTTA
AAGTTGACAAAGAGGGCCATTTGTCCTAGTTATGACATTTTGGACATTTT
AGCTTTAAATAGTGACTTGAGGGCCAACACTGGTTTGTTTGTTTGTGTAT
ATCCGCGTGTATTCTAGTTCTGGTTAAAGTCAGTGCAGTAATCTTTTATC
AACCAACTCTTTTGCATATTTGTAAAATAAATTGAGGTTTAATATCATGG
TTGTAGGTTGGAGATGAAGCTGGTAAAGCGAAGGCAGCCCCAAAGAAGAT
GAAATTTCAGGTCATGCTACAAGTGCCTCGAGATGATATTAAAACATCAA
CCTTAATGTTACGCTTAAAAAAGAGATGGGACTTTTGAGGAGGTTTGTAG
TGCGATTAATCTTGTTGTTCAACTTTAATCATATTTTATGTGTTTATAGA
ATAGTTCAATAGCACGTTTAATGCTTGGAATGTTTTTAAATTCTAAAATC
TTTTGCATACCAT
Sequence Length: 
11913
Sequence Checksum: 
b992614e0aec6e3256ffd2c2f2aba6d7
View location in JBrowse: 
Cds: 
>DCAR_029913cds ATGGACGAAAATCCCTCAGCGGCAGTGGGCGGAGTAGTAAAAACAAGTAA TAGTAGCTCGATGTGGTCGCGCAGGCCGCCAGTGCGTGTCACGTCTGAGT TCGACAGTGAGAGCTGCTCCTACTTTCACAAGATTTCCTGCAAATTCATG GACAATTTGGCCAAATTGAAGCTCAGTTTTCAAAACAACTCCAAAGGACA AGTCAGTGATCCTCATCTCACCATTCTTTCTAAGCATCTCTCTCTTGATT ATGATGTGGAAGAGCAGAATGCACTTGTTAAGGCCTTCTTTCCTCTTTCT CCGACTTTGCATCTTCGAGCCACTCGTGATATTAAGGCACAACAAGGAGA ATTGGCGGTGGTTGCAGATCTCACTAGTACAGGCTACAAGTTTGAACTGT CATCTGCTCTTCCATCTGGTGGTCTGCCAAGAGCAAGCTTAAGATTTCCC CTTGGTGAAGTTTCATTGGAAGAAAAGGAAGAAGACAAAGATCATGTGAA GAAAATGTTATCGATAAATGGAATTCTCAAGGGTCAACTTTTGAAAGGAG TTTGCACGGCTATATACAGGGATGAGAAATTGAACATGAGATACTCATAT AAGGATGAACAAATGTCTTTCATTCCAAGCATTTCTCTTCCTTCAAATAC GCTTTCACTTGCATTCAAACGCCAATATAGTCCTTCAGACAAGTTGAGTT ATTTCTACAACTTCAATTCAAACTTCTGGAGTGTTGTATATAAGCACAAA GTGGGGAAGGACTACAAATTTAAAGCTGGTTACGATTCGGAGGTTCAACT TGGTTGGGCATCCTTTTGGGTTGGAGATGAAGCTGGTAAAGCGAAGGCAG CCCCAAAGAAGATGAAATTTCAGGTCATGCTACAAGTGCCTCGAGATGAT ATTAAAACATCAACCTTAATGTTACGCTTAAAAAAGAGATGGGACTTTTG A
Pep: 
>DCAR_029913pep MDENPSAAVGGVVKTSNSSSMWSRRPPVRVTSEFDSESCSYFHKISCKFM DNLAKLKLSFQNNSKGQVSDPHLTILSKHLSLDYDVEEQNALVKAFFPLS PTLHLRATRDIKAQQGELAVVADLTSTGYKFELSSALPSGGLPRASLRFP LGEVSLEEKEEDKDHVKKMLSINGILKGQLLKGVCTAIYRDEKLNMRYSY KDEQMSFIPSISLPSNTLSLAFKRQYSPSDKLSYFYNFNSNFWSVVYKHK VGKDYKFKAGYDSEVQLGWASFWVGDEAGKAKAAPKKMKFQVMLQVPRDD IKTSTLMLRLKKRWDF*