DCAR_008789

Resource Type: 
Gene
Name: 
DCAR_008789
Identifier: 
DCAR_008789.gene
Locus Tag: 
DCAR_008789
Publication: 
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship: 
There are 3 relationships.
Relationships
The mRNA, DCAR_008789, is a part of gene, DCAR_008789.
The genetic_marker, MK017367 3_1329187, is located in gene, DCAR_008789.
The genetic_marker, MK004750 K2194, is located in gene, DCAR_008789.
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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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Transcripts: 
Transcript NameIdentifierTypeLocation
DCAR_008789DCAR_008789.mRNAmRNADCARv2_Chr3:1328375..1333536
Sequence: 
CGTCTTTTGGCGCGAGTTTCTGTATTGCGGTATTTTCGCGGCTTCGCACT
TCACTGGTGCCCTAACTCTCATCCCCTTTCTGAGTACTCAGGTAATGCGC
TACTTCATTCACAAATTCAAGTATTTAAAATTTGCTTAAATTTTTATTTT
ATTTAATTGCAAAAAATGCAAGTGTGTGGTTAGGTGCTAGGTGTTTGATG
AAAGTTCCCTGTGAGTTGTTTAGGCAATTACTCGTTATTTTCAAGGGGGC
TCATTTTGATTCGAAGTATGTACTGTGCTAAATGTCTGCCGTTATAAGAT
GTGAAGTGTCTCTTAAGAATCCTTGTTGCTCGAATCATGTTTAAGAACCT
ATCCCTTCTAACTTTTTTGTGTGATTAGTTTTATGTTTGTTTTTAATATT
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGAGGGGGAGGGGAG
GGAGAGAGAGAGGGGGAGGGGGAGAGAGGTCATGTTATATGACCATTGAC
CAGTTATGTGGTGTTGGGGATCAAGGTATTCGGAGAAGTCATAAAATAGA
TTATATAAGTTTGGCATAGTGTTTATTTATTAGTATAGATAGGTGACGCA
GACTAAGCACTTTGTGAGAACACGGTTAGAGGTAGTGCGGGTATTGAGAT
TCGGTGATGGTTGTCCAATCAATTGGAACTGTTTGAGGAATTTTAGTTGG
AGTGAATATACAGTAAAAAAAAAAGCTGCATTACTTGTTAATTGATGGGA
TTGGAGAGGAATTCAAAACGGCTAGAGGTTGACCCTATATCTATACTCGA
TTTTCGTGACACAGTTTGAACCCTAGGACTAGGAGTATATGTTGTTGTAG
ATGAAGCATCAAGCTTGTTAACTACTTAGTTTACATAGATCCTTTGGGTT
CATGTAGTAGGGAAATATACCCAAATTAGAGAATCTGATTTGCTTGACAG
AGTGTTTGAGTTCATCTGTTTGTTTTTCCAGGTATTGTGACACCCTTGAA
ATAATAGTTAACAGCTACAACTATGGAGAGTACTGATTTTGATGAAGGTG
ATTTTGAGTTTTCAAGAAACTACTTCCTAGCTAAAGAGTCAAGCACTTCT
GTGAAGAGATCTACTCATAAGCTTTCTGATATCGATATTGTTGATGAACA
GGTTCTGCTCCAGTTCTTAACTATTTCTCTTAGTGATAGTCACCAAATTT
GTGTGCATTTATGACACCATTGGATTTACATGATATACGCCCTAACAAAT
ATGCAGGAGCTTCGAGAAGCAGTTTCCAATATTGAGCCTAAACACGAGAA
AGAAATTGATTTACTGATTAAAAGTTACAAATGTTTGTACTCCAAATGGG
CTTTTGAGTTAAGGTGTGCAATCCCTTGAAAACTTGTTTATTCAATTGTT
TGTAATTTGGGAGGGATGCTTCTGGGGTTGCAATTCAATATTTAATGTTA
ATCTATGTTTCTGTACCAACCCAGGGCTGGGTTTGGTCTCCTATTGTACG
GTTTTGGATCTAAGAAAGCATTGATTGAAGATTTTGCTTCAACAACCTTG
ACTGGATATTCTGTTTTGGTGATCAATGGCTATCTTCAGTTAATTAATCT
TAAACAGGTAATGTAAGCCTCGTAAAGCTGAACAAGACCACTAACTTTAT
TTGGTAGTTTTACTTCTTTCTCCATGTTTGTCTTCATTTCATCTTCTAAA
TGAAGTTCTCCATCTGCATAATATGGTGGATTAGTTTTAAATAGCTGTTG
TGTATAGTTTACTCTATTTTAGACATAATGCATATGTGCATGTACAAAAT
TTTATAAACAAATAAAAGAAAAACGATTGTTAAATAAAAGGAACTTTTCT
GGGAGTTTAAAGGTGCCAGGTGATTGCTCTGTGGGGTTATTATATTCTGA
AAAGAGGGTGGAATGTAAAATTATACTTGTGCTATAATAGACTCAGTCCT
CCTGCTAGTGTGTAGTATATATGAGTTCGGAACTTGGTATATACTTCAGG
AACTCTAGAATCCACTGTAGCATATATTAGTTGACACAAATAAAACTAAA
AGATCAATGGTTTAGGTAGAATCAGCATGATGCTCAAGTTTGTCATACCG
AGAAGGTACAATTATGAATCAAATGCCCTTTCTACCTTCCTGTGCCAAGG
TTTGTACTCTCAGGTTGTGGGTTACAACATATGCCAGATGGTTCTTCAAC
AGTGTCTTACCTGTTTTTCTGTGTGTAGCCTAGGTTGTCTATGCAGAAGT
GTTTCTCGATGTTTATCAGGTAGCAGCGTAGCTTTATTTATCACTCCCGG
TCTTCGTATTTTATAAGTTGGTACAGAAATTAAATTCACAGGAATAAGGA
AACACAGAAACATACCACTTAACAGGATTTAGTTCTCAACCTATTTTTAA
TTTGGTAGTGAGACAAGAGGAGCCAATAAGATAAATCCTGTGTTGTTACT
TCTATTTTTGTGTTCTGTTTATCAATTATTCAGCAAATGCTTTGATGACT
TACTTGGTCCCTTCCTAATTTCTCATAAAATTTTATGTTTCATAATGCTT
CCCAACTGAATACTCATGTTCTTGGTATTGTCATACTTACTTTATGTGTG
TGTTGTATTTTAGGTTTTAATTACATTATGTGAACTGCTTGGAGACCAGT
TAAAGGCACAGCGAAAGACTCCTTCAGGGAGCCAACGTTCATATAATGCC
TTGTCCATTGATGATCTTATCGCTTTTCTAGATGGACCTCACGTGGATGG
GAATGAATGTTCCATTTGTGTTGTCATTCACAATATTGATGGGCCTGGAT
TACGTGACTCTGACAGTCAACAGTATCTTGCAAGAATTGCTGCTTGTTCT
CATGTTCGTATGGTGGCTTCCATTGATAACGTAAATGCACCGCTTTGTAA
GTATAGTCCGATTACTGCAATTTCCATATGCGCGTAGTAATGTTGTCTAG
CCTATTTTATTAGTACTGTAAGTTAGTTCTCTGAACATTTAGCAACTATG
GCAGGAGGTAGTACAAGTGTCTTTCTGAATTTACACACTTTAATAAATAT
GTATATTATGATGGATACTAGATAAAGAATACAGAACTTCCTTCTCACCC
TTCTCTCCTGCAATATATCCTATCTCGAGTGACACAAGTCTTAGAAAGGT
ATGCATTATGAATCTCTCAGTCCCTGGAGTATCAGCCATTAGATTAGGGG
CTGGCTCAGACCACGATATATGTTCCTCTTATATATGCTCATACTATTTG
GACCTGTATATGATGTATATAATTATAAATTTTATCTCCATCTCCTGATC
CAAAAATTATATATGTATGTCATACTAAGTTCAAACTTAACGGCACTTTT
ACTTTATGCAAGTGTGGGACAAGAAGATGGTTCATACACAATTCAACTGG
TGTTGGCATCATGTTCCTACTTTTTCACCATACAAAGTTGAAGGAACCTT
TTATCCATTGATTCTTGCTCATGGAGGAACCACCCAAACTGTCAAGACTG
CTACGATAGTTTTGCAGAGTTTGACGCCTAATGCCCAGAGTGTATTTAAA
GTTCTTGCAGAACATCAACTTGCCCATCCTGATGACGAAGGTATATGGAC
TCCAGAGCTTAATTTTTTCTCTTTTTTGTTGTCAGGTCTTTTTACTCCTT
TTTTTATTGCTAAATTAACAAAAAATTATATCAACGATAAAGCACCAGTA
CAAGACTAAGGGCATACCTTGCAAGAGGTACTACCCATTACTTGAAACAT
CAACTAAGCTGCCTAAACAGAAAAGCCTATTAGCTAGGATACAAACATAT
CAAAGCATCAGAACTAACGTTTAATACAAAAGTAACTGTAAAGATACATT
TCTGATAGAAGCCAGCACAAGTAAAAAGTTTTCCCAGAAATTCCACTCCG
ACCAAGTTGCATGAAACACCTGTGCAACATATAGATAAGCTATCTTCCTT
TGAATGGAATCCAAGTTAGAATCCACAATCTCTCCATCATTTTAGTCAAC
CCAACTCAATCTTATTTGAATAGGACAGCAATCCCACACTTTATGAATGA
AATTGCAATTACAGAACAAATGCTCATGAGTTTCTGCGGGGGTATGACAC
ATGGTACAGGTGGGAGAGACATTCATCAGAAATTTATCATTCTATCTCGC
ATCAGCAGCTTCTCTTTTATGACCAGCCATAAGAGAACAGAATATTTTGG
TACAGAAAGATTATGCCAAACCATAAGAAGCCATCCCAGCCCAACCGCCC
ACCTTCTAAAAGAGTGCCAAATAGAGGTAATGGTAACAGACCTATTACCA
TCCCAATCAATTTTACAGCCAGAGTGTATTGAAATTGTTGAACAAAGGAG
TCGAAGTTCATAGCATCTATGTGATTAGTGTGACAGAAACACCAAGCATT
ATTTGTACACACAGAAATCACTTTTGCCAGCTTGAAAGATTTCATGATAG
AGATGATACGAGCTCCCAAATGTTCAGCTAGTGACCTACCTTTCCCTCCA
TCTATTATACCAGGTTGCTAATATATATTTTTTTTTTTTGTAGGTTTTCC
TGTCAATAATCTTTACTCAACCTGTCGAGAGCGGTTTTTGGTGAGTAGCC
AGGTTACACTGAATTCTCACTTGACGGAATTCAAAGATCATGAGCTGGTG
AAATTCAGAAAAAATTCTGATGGTCAGGACTGCCTGTACATTCCTCTAAC
AACAGAAGCACTTGAAAAGGTTATCGAGGAGATCAGTCAATAGAGGATAT
AAGCCGTGTAAGTGATATCGCTTATGATGGTAATTACCTACATACTGGTT
ATCTCTACTTATCAGTTTCTTTCATAGAGATCTGCAAGTAGTAATGCAGA
AACGATCTGATACATTAATATTTAGCTTTTGCTTAAAGTGTAGGGCAAAA
TATCTTTAGCAACATCAGTGTTCATTCCTGTCATCTATGTTAGAAAGTTT
TTTCATGGAAATGTCGAAATACTGTATTAAGCAATATTTCAAAAACTGAT
GTGTTTTAGATTGCATATTTTAAGTTGCACGATGTCAAAATATAGAAAAG
CAGCTGGGGCTTTTACATTTTATTTAGGTATTTATCTGCCATTTAACAAA
AAAGAACCAAATTTTCAAAAATCAGCAACTAAAACCATAAAAATTTGCAT
CCGTTTCCAGTTAGTAGGACATTAGAACTATTTTCTGATTGGAATGACCA
ATTTTTAATTGGAAAATTAAACTCCTTCATCTATAATTTATAAAAACTGA
AAAATATATTTTAAAATAAATTATAAACAAATCATTAAAATGATATATGA
TAGATAAAGATTGACTGAGTTGTATCTAAATGTTATTGGGTATTAAAAAA
GGGGCATATATAATCTTAAAAATATCATTGAGAAAGACATAAAAATTATT
ATTTGCACGTCTTTGCTAAATTTGGTTCTATTCTGTTCAACAGAAAGAAA
ATGCAACCACATGCGCAAGTTGGTTAAACGATTAAAAATAAAACTTCATA
AATTTGAGAACTGTGCACATGTAAACTGACGTCAGTAACCATTGCTATTT
GTGCTAATAATTTGTGTACCACGCGAATCAAATATGACATAATATTTGTA
AAAAGTATTACCAATTCAATTTGCTTTTCAATAAAATTTGAAAAGTATAA
ACATATTTCTCACATAAAATCCATATTAATTTATTTTGAGCTCATGGTTG
GACTTTAAATTAATTTTTTTAGAATAAATATGAAACCCGATTGAATCGAA
TCATATGATCGGGAACTCTTTTCAACAAAATAAAAATATGTATTTAACCT
GATGAAAATTTAAAAATTGTAAAAATTGTGTAAAATACAATCAATTAGTC
TCTTTCTGAAACTAATTAACAGAAAAGTTATGAAAAATTAAGAAATTTAT
CTAATTTATGTGACGCTGAACTCGAATATTTTTTATTAATAGAATTCAAT
TCGGACGAGTGAGCTGCGGCGAACAGCAAAACGCAGCGTTTTGCAGAGAG
TACAGATCACATCCACCAGATGACAGCCAAAACAGCAATATCAAATTTGA
CCCAAATTTATCATTTAAAAAATATAATAACAATAATTCAACATATATAA
AAAAGGAAATTTAGCTCTATTTCTTTTTCTTTCCCTCTCTCTCTAAAAAT
TATGCAGTGAAACCGCCTCGATCTTCACGCGATTTCATGTAATCTCTCTC
TCTCTCTCTCGCTCAATCTCGCTCGATTTCATATACAAGTGTGTGCAGTT
TACGTTTATGTATGCTTGATTTTATTAATTTGTAACTTGTTATGCTTGCA
TATATGTATAGATTATATATGGTTGAATTATTCACAGTTTGGATTTGTGA
ATTTCTTAATTGTTAGCTAGAGCTTATTTGATTCATGTTAATTGTGATTA
TTCAGTTTATATCTCGAAAGTTAGTTGTAATCGACTTTGATTCGAATAGG
ATTCTGTTGCGATGTTTTCTGGGATTTAGGTTTTGTGTGTGTAATGTGTG
TGTGATTTTTGGTGTAGGTTTAGGATTTGATCGGATTGGAAATGGAAATA
TAAGGGGAGGCACATTCGTGATTCGTTGATAGTGTATGATTTCGAAGAAT
GTCCGCTAGGAGTGATCATCATCAGACTGTTCCCCTTTCGGTATTGTTGA
AACGAGAATTGGCAAGTGAGAAGGTTGAGAAACCGGAGATTTCGCATGGT
CAGGCTAATCAGAGCAAGAAGGGTGAGGATTTTACATTGGTTAAGACGGA
ATGTCAGCGTGTGCTAGGTGATGATGTTACCACGTATCATGTTTTCGGGG
TTAGTTTATCCTCTGCTTCCTTTTGTTTGCTGCTTGCTTGATTGTTTTAG
GCATTTGAGTGTTGTGTCAGGATCCTTTCATCAAGATAAGAAGTATTCTA
CTACTACACTACTTGTTGATGGTTAATATGGAATTTGGTGTTAATTTTGG
TGGTTCGTGTTAGATTATATTTGTATTGAAAATATGGCATGGAACTATTG
GACAAAATTTGTATGCTACATCGTGTAGTGTGGTTGGTAGCTCAGGTGTA
ATGTGAATTGGGATGCAATAATTCTTCTGAGTTACCTGGTCTCATTTTAA
GTGATTGTGTGTGACCTTGTATTATTATTTGCGCGTGTATAGGATGGAGT
TTTAGGAGCTACATGGCTATATTGTCTGCTTTCTTACTTTCTCTCTTTTA
CTCAATTTCCGAGTTTTGTACACCAGTGTTATCTTCTCGTTCCTTTATAT
GGTAGAATCAATTTCCCTTGGTTTGTTCCTCTACTTTTGACAAGCCCTAC
TTCATTTGATAGAATTTGGTCTCGTTTGAAAATTTTAGGTTTGCTCTTTC
TTAAAAATCACTTATTTGCAGCTTTTCGATGGGCACAATGGGTCTGCAGC
TGCTATATACAGCAAGGAGAATCTTTTGGCTAATGTCCTGGGTGCTATTC
CACCAGATCTTAATAGGGATGAATGGATTGCAGCATTGCCGAGGGCCTTG
GTTGCAGGGTTTGTGAAAACAGATAAGGATTTGCAAGAAAGAGGTATTAA
CAAATCCATGCGCATATCTATAGTTTTACAGTACAATAAGCCAGTACAAG
ATCTGTTAGATGATGGAAACATTTATGAAAAGCGAGCTTCTGTGGAAGAC
GATATTAAACTTTTAGAAGGGAATATTAATATTTATGTGCATGCCATGTA
AAACATATATAATCACACCCTTGATGCTATGATAGCGATTAGGGTATGGC
AATTTGAATACAAACTGACTTGCTTACGGAGTGATCATCCTTGCATGATC
TTGAATTACTAATTATGCTGTTATTAGAAAAGCTGTACTGAAATGCTGGT
TTAATGGTTTTGACTAGAAAATTATTGCGTATTTGTATCTTCTTCCAATA
TGCATCACATATTCTTGTAGTGATCATACGCGTAAAATTTAAAAATATTT
ATTATTTTAACCGTGGTTAAGAGTTGTAAGAAAATGTAATGGTCTTTCCT
TTACACCAGAACCGTCCTAAATAGATAGTATATAATTATACATCACTTTG
CCAGTTTGTTTATTCCTGAACATGTTGTTCAAATAAAATTTGGGGTATAT
TTAATATATTATCCTAGTCAATTCCTTGCAAGATGTTACAGTTTCAGTGA
TTTTATTTTCCTGTAGAAGATATGGCCATAACGACTTCCACTAGTTCAAG
TCTCTAACATCACATAAAGGTGCAACAAGATAAATTCATATGGTTATACT
TATAATTCTTTTTGCATCTGTATATATTCAGGATCCTTACATAAACCTCT
TATTTCTTTTCGAAACACACTTTATAATTGTTCTTGCAAACACTCGCAGT
TAATTAGATAATCATAAACCATGCACTTAACACTTCCTTTTGGGAGAACT
TTGAGAATCTTTAAAACATTGTCAGTCTGGTATTTAGAGTTTAGACACCT
ATTAATGTTTATAGGTGAGTAGGGGTAGCATAGTAGCACCAAATCCCTAT
ACAAGACAGACCTGGTGGATTCTTAGGAATTTCCTTTTTACTTTAAAATG
CCTCTCCAGGTTTAACATGTTACATTTAGAATGTAAATTTTACGCTTTAG
TAATGGTTTATTATAATTTCCTGTCAATTTGTGCGTATTTGTTTTAAGTA
TTATATAATTATATAATATGATAATACTTAATTATTCTTCTGTTGGATAT
CAGCGCGAACTTCAGGAACAACTGTTACCTTTGTGTTAATCGAAGGACTC
TTTGTAACTGTAGCATCAGTTGGTGATTCCCGTTGCATCCTTGAATCTTC
AGAAGGAGAAATCTATTATCTATCTGCAGATCATAGACTTGAAACAAATG
AAGAAGAGTAAGCTGACATACTTTCAGTTTGTATGATTATATCTTATTTT
TTTGGCCAAGTAGGTCATTTTATCGTCTAGTGGCTTTATTTGTAATTTTT
TTTTATCTGGTATGAAAATAAACCAGGAGGAAGCGTATCATTGCAAGTGG
TGGCGAGGTTGGTCGACTTAACACTGGTGGTGGTACGCAGGTGCAGTTTT
TCACTATTATTGTTTTAGTTTCATCTTGATAAAGTTTCAACGATCTCTGT
CTACTTTTTTTAAATAAACTGAAGTACCTGGTACTCGGGGGTGGGCCCCG
AGTGGTTACTTTCATCTAGGGAGTGGGTGATGTCATATAGGGCTAGTTTC
TCTTGGTTTGTATTTAAGGTTTCCATTTAGTGGTTTTTATTTGATCATTA
GCCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGATGTATAGTT
GTTGCAAGTTATTTCGGGGTAACGTTCTGAACTGGTCATGCAAATTTAAT
TTATATGCACATTTTTCAATTTAGCGAGGGGTGGGTCCAAAGCAATATTA
TCTGCATATCTCATTTCACACTATTCAAACCACCACACACAACATGGTAT
TGGTTAATTAAATATTTTTATCGCAGATCGGTCCTTTGAGATGCTGGCCA
GGTGGGTTGTGCCTATCACGATCTATTGGAGATATGGACGTTGGCGAGTA
CATTGTCCCTGTTCCTCACGTGAAACAAGTGAAGGTTGGTTACCTTTTCA
TGTTGCTTCCGTAGATCTTATGCAAATGTCTCTTTTAACGGCTTTAAGTG
TAAACTAGTTGGTATTGTACTAATTTCAGTTTTTGGACAATCCATATCTA
TTTTTATCCGTCCTACATAATTGCTCCCTCTTGTTATTTACTTGACTTGC
AACCCATTTCTTTCACAATGATAATAAACTAAAAAGCTGGATGAATTTGA
TACAAGTATTTGTCACAATTATTGTACAGAGTTAGAAATGAACAGCAGTC
CAAAGAGAAGAAGATCAATTCTATCCAGCTGTGCTGAAAATTAATGAATT
GGGAAATTTTTAGTGTGTGTATGTGTGCGCCTGTGTGTGTGTATTTGACT
GACTACAGTTTCTTTACATTTGATATTAGGATACTTGTAATTTGTAATGA
GGCTTACTAGAAGTGTAAGACAAGTTTATTTGAAACTTTATTATATGTTT
ACATGTGACACATGAAGTTTTCCAATTGTTAAACAATTACTCCCTCCGTT
TCAAATTACATGTCCACTTAAAAAAAGTCACATAGTTTAAGAAAAATGGA
TTGTGAGAAAAAAGAGGTGTATTAAGTCATTAATTGAACATAATGTGTGG
TGTATGGTTTATCTTGGAAATATAAATTTGTAATATGTGAAGGAGAGTTG
ATTTTGGAAATATAAATTGACATTGAAAGTTGAAGTGGACAAGTATTTTG
AAACAAACTTTTTTTGATAAAATGGACATGTATTTTGAAACGGAGGGAGT
ATATTTAAACCTTCGATTTCTGTTAATTGAACGAATTGAACCCTAACTGG
AACCATGGATGAGTCTATGAGATAAGTTTTTAAGAGTAGCTATTTGGATA
TTGGGATCCCATTTGTTAATACGTGTTAACCCCTGGGTTCTAACTTTTTT
CCATGGAGTAATTAGTACGAGACTTTCATCTTTAGTAACCAGGCTAGGTC
TATCTTCCTATAATTTTCTATTAGGAGCAATTTTTCACGTTAATAATAGA
AAAGTTGTTTAGTGTGATTGTTATGTTAAGTCTTTTGACTGAGTATTGTA
CTGGTTCTGGCATGAGACTTAAGTGTTCCTTTTAAGCAAATTACAAGTTA
ATGTTACAGTGTTGTGTAATTTTAATGGATTTTGTGAATTTTTTTTTTCT
AATGTAACATTGTCAATGTTTTCTTGTGTAGCTCTCCTCGAGTGGTGGCA
GACTTGTTATATCAAGTGACGGTGTCTGGGATGCTTTAAGTGCCGAAACA
GCGTTTGAGTGTTGTCGTGGAATGCCACCAGATGCCGCAGCTTCACAAAT
AGTAAAAGTATATGCTTGCAAATGCTTTCTCGAATCAGCAACTTTGTTAT
TCTTTTTTTCAATTAATTAGACATCTATTTACATTCATTACTCCTATAAA
CAGGAAGCTGTAGGGTTTAAAGGACTTCGAGATGACACAACCTGCATTGT
GATAGATTTACAACCCCCAGAGAAGCCAAGTCCTCCTTTGCCGGCACCAC
CTAGAAAGCAGGGAATGAAAGTTTTTAAGTCTATGTTTAAAAAGAAGAGT
TCTGAGCCATCTTCAGTTTCTGAGAAGGAGTACAGTGAACCAGATGCGGT
TGAGGAATTAGTAGAAGAAGAATCTGCAAATCTTTCTGAAAGGTTTGCAA
CTTCTTCCGTTGATATTTCATTACAAACAGCTTACAGCTTTCTATCTCGG
TTTCTGGGATTAGGTTATTTTAATGCTCTATTAATTGGCCGTGTTACATG
GGAAACATAAACTGTATGATATATGATTACCTGTGCTTGAGGATGATAAA
TTTTACTAGCCAGGTCTTTGTTGTCTGATGTGGTTCTGTGACTTGCAGGC
TGGACACAAAGTACCCAATCTGCAACATGTTTAAATTGTTTATATGCGCC
ATTTGTCAAGTGGAGATGAAACCTGGAGAGGGAGTTTCAATACACTCAGG
AACTGAAAATACAAAAAAAATACGGCCCTGGGATGGTCCTTTTCTTTGCT
CAAGTTGCCAAGAGAAGAAAGAAGCTATGGAAGGGAGAAGAACTTTTGGA
GGTATTTTCTAATGATATTTCCTAAAAGTTACATTCCACCGATGTGTACC
TGACACAGTGCCATGTCATTTTTTTTCCAGATTCTACATACAGTAGTGGA
AGTGAATAGCCAAGCTTGACTACATGTGCATTACACAAAAAACTAACCAT
TGTTTGCAATTAAATCGTAAATGGTAAGGCGTATTAGAAAAATGAATCCC
AACTAGGTTTCTTGCAAGGATTTCAATCTGAGTTCATTTATCGAAAC
Sequence Length: 
11897
Sequence Checksum: 
e19f2500e223e909545488de60eb0050
View location in JBrowse: 
Cds: 
>DCAR_008789cds ATGTCCGCTAGGAGTGATCATCATCAGACTGTTCCCCTTTCGGTATTGTT GAAACGAGAATTGGCAAGTGAGAAGGTTGAGAAACCGGAGATTTCGCATG GTCAGGCTAATCAGAGCAAGAAGGGTGAGGATTTTACATTGGTTAAGACG GAATGTCAGCGTGTGCTAGGTGATGATGTTACCACGTATCATGTTTTCGG GCTTTTCGATGGGCACAATGGGTCTGCAGCTGCTATATACAGCAAGGAGA ATCTTTTGGCTAATGTCCTGGGTGCTATTCCACCAGATCTTAATAGGGAT GAATGGATTGCAGCATTGCCGAGGGCCTTGGTTGCAGGGTTTGTGAAAAC AGATAAGGATTTGCAAGAAAGAGCGCGAACTTCAGGAACAACTGTTACCT TTGTGTTAATCGAAGGACTCTTTGTAACTGTAGCATCAGTTGGTGATTCC CGTTGCATCCTTGAATCTTCAGAAGGAGAAATCTATTATCTATCTGCAGA TCATAGACTTGAAACAAATGAAGAAGAGAGGAAGCGTATCATTGCAAGTG GTGGCGAGGTTGGTCGACTTAACACTGGTGGTGGTACGCAGATCGGTCCT TTGAGATGCTGGCCAGGTGGGTTGTGCCTATCACGATCTATTGGAGATAT GGACGTTGGCGAGTACATTGTCCCTGTTCCTCACGTGAAACAAGTGAAGC TCTCCTCGAGTGGTGGCAGACTTGTTATATCAAGTGACGGTGTCTGGGAT GCTTTAAGTGCCGAAACAGCGTTTGAGTGTTGTCGTGGAATGCCACCAGA TGCCGCAGCTTCACAAATAGTAAAAGAAGCTGTAGGGTTTAAAGGACTTC GAGATGACACAACCTGCATTGTGATAGATTTACAACCCCCAGAGAAGCCA AGTCCTCCTTTGCCGGCACCACCTAGAAAGCAGGGAATGAAAGTTTTTAA GTCTATGTTTAAAAAGAAGAGTTCTGAGCCATCTTCAGTTTCTGAGAAGG AGTACAGTGAACCAGATGCGGTTGAGGAATTAGTAGAAGAAGAATCTGCA AATCTTTCTGAAAGGCTGGACACAAAGTACCCAATCTGCAACATGTTTAA ATTGTTTATATGCGCCATTTGTCAAGTGGAGATGAAACCTGGAGAGGGAG TTTCAATACACTCAGGAACTGAAAATACAAAAAAAATACGGCCCTGGGAT GGTCCTTTTCTTTGCTCAAGTTGCCAAGAGAAGAAAGAAGCTATGGAAGG GAGAAGAACTTTTGGAGATTCTACATACAGTAGTGGAAGTGAATAG
Pep: 
>DCAR_008789pep MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKT ECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRD EWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDS RCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGP LRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWD ALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKP SPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESA NLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWD GPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE*