DCAR_008790 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_008790

Identifier:

DCAR_008790.gene

Locus Tag:

DCAR_008790

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 3 relationships.
Relationships
The mRNA, DCAR_008790, is a part of gene, DCAR_008790.
The genetic_marker, MK004646 K2090, is located in gene, DCAR_008790.
The genetic_marker, MK017366 3_1336662, is located in gene, DCAR_008790.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_008790	DCAR_008790.mRNA	mRNA	DCARv2_Chr3:1336047..1345185

Sequence:

ATGTATGCGGTAGGGAGGTTAGGGAGCTATATCTCACGGGGTGTGAACAC
GGTTTCTGCACCGTTTCATCCGTTTGGTGGTGCTGTCGATATTGTTGTGG
TTGAGCAGCAAGATGGTACCTTTAAATCATCACCTTGGTATGTGCGTTTT
GGGAAATTTCAAGGAGTTTTGAAGGCAAGGGAGAAGATTGTTGACATTAA
TGTTAATGGTGAGGATGCAAATTTTCATATGTTCTTGGATCATACAGGAG
GGGCTTATTTTGTTAGGGAGGTAGATGCAGAAGATGGGAAGTTATTATTA
TCATGTACGTCTTCATGTGAAGAAATGGTTGAACTGGAAAGGAGACCTGC
AAAGTGCAATAGTTGGAATGAAAGCATTGATTCATCAGGCGTAGTTACCC
GGCTTGAAGTAAGCAATGGTACAGTTGTTTCCAGGTCTGGCTTCATGGGA
CTTGTCTTTGGAAGGAATTCAGTGAAAGAGAATAGATCTGAGAAGGATGA
GGATGCTGCTGAAATTATTAGGGCAGAATCTTTAGAGCGTGCCGAGATTG
CTGCGGATCTGTTGGAGGTAAACTGGTCTACCAATCTTGCCTCCGTCAAG
AAAGACAAGGATAGCGATTCACGTGTATCTGTGCCAGACATGTTAGATGG
TGCAGCAAGTACAAATGTTCCGATAGATAAGGATTCTTGTTTGTTAGAAG
GTGGTGCAACCAATGTGGTTAATAAAACATTTCAACGCCAACCAACAGTA
TACTATGAAATAGATTCGTCGGATGTTGATTCAGATGGCAATGATGAAAA
AGACAATGATACGATTTGTGTAAAATCCGGTGGAGTCATCATGCAGGGAA
TAACTTCACCTGGCCCAGATACAAGTACTGAGGATACTTCAGAAGTAGAA
ACTTTACATGTTCTAGGTGATAGCACTTGCAGTGATGGGAAGATGCATGA
TGGAAGTAGTGAAACAAAATCACAGAACGGAGTAGTGAAAGAAATCTCTA
CTGAGCCACTTGCTTTTAATCAAATAGATGATTCAGCCAAAGAAATTGAC
TCGTGTAGCACACTCACCAATATTAGTAGCAGTGCCAATGACCCAATATC
TTCAGTTCAAGGTGATGGGAAGAGGCTCCAACCACTTGGTAAACGTTTCT
GTGTTTCTGAAGAAGTTGGTATTAAATTTGTTAAAACTGAGGAGATGAGT
AACTCAACGTCAGCAAGTTTAGATGAAGAACAGTTCCTTTTTAGTGATCT
CGACGACTCCAAAGTAAGACACATAGAATGCATGGAGGTAATTCCTATGA
ATCTGGAAGACAAAGAAAAAGATTTATCATTTACAGCAGAAGACAATGAA
TCCGTGAATGGATCTTCTCATTCAGAATTTGAGTCTCCAGTAAATTATAC
TGAAGAAGAGTTACCAGTTGATGGTGAAGAGTCGAGAGAAGAGGCTACTG
AAATATCTAGCCACATTAAGATACCTAGAAATAATCAATGTTCAGGCCAG
GAAATAGAGGGAATGGCCGAGTCTCTTCCTAACATGCGGTCACAGTTTGA
TGAATTGGACAAAAATAATGCTCGTCATACTTTAGGCCATTCCCTTGATT
TAAATCCCAAATTATCAAAGTGGGCACTGTTAAGGAAAAATGTGGGAAGT
AGCATAAATTCAGACGTGGGGGGCGTAAATAGTTTATCAAATTTACAGCG
CATGACTAAGGATGCTCAAGTTTTGTCAGAACTGAAAGCTACAGACACCA
GCCCTGCAACTGGTAAAACTTCTCTTACAGATTAATCATTCATTAAAAGC
TTAGAACAATTATCTTTTCGTAGCATTGCCATTGTCTTATTTTATTTGGA
TAATCGAAATAAATTAATTTTCATTTCATAATATGTGATTGGTTTGGCTA
TCAGGTTTGTGTTCGGTTTTACAAAACATAAACTGTGGTTCTTAATTATT
AGTTCTATAACCTTTGGTCAGTGATATGTACGTTTATTATTTTCTTAAAT
GTTTAACAATACAACATTGTATACAAAATATAAATTCGAACAATAAATAC
CTTACATCTGAGAACAGTTCATCTCCTGTTGCTCCATTATAGTGTCGTTA
GTTTAGGGTGATTATATTATTTCAAATATTTATTCATTATTGAGTCGATA
TTATTAATACTGTGAGTCTGTAATGTTTTACACATTTAAGCATCAAGGCA
AATAAATTTACAAAATATTGAGTCCTACCTTGGCTTCTGAAATTTTCTCA
AAAACCAAAGTGTATGCTCTTTAACAAGCTTAGATGAGCTTTTGTTGCTT
CTTGCACTTTGTTCCTTTAGAAAGGTTGAATGATGATTTTCTCGTAAAAG
AATTAATAGGAAGGTGGACAAATTTTATATTAGGAGTCGTAGACTTGTAT
TAAGTTCAAGTACACTAGGCGGTCGGTTGTCACGGTTATGATACAATGCC
TGTTTCCTAATGTATTCTTGCATGTAGATGCAAACAACAGGTTAAATATA
ATGTAGCATCTACTGGTTGGACTGATTTAATTTTTACAGGGGATTCTTCT
AAAACTGTTGAACTCTCCTCGAGTGGAAACTGGGGTCAATGGCTCTTTAA
AAGATCCAGGAGCATGAGAGATAAACCATTATCTCTTGATCGCAGAAGAA
GCATTGATGCTGAAATGTCTTCAGCAAGCACTGGTAGCATTGATGGGGAG
AAAGAAGTGCTTGATAAAGAAGTGCCCAGTAAAGAAGTTCCAAAACCCAA
AGCAAATAAGAAGAGAATTAGGGTAGTCTCCCCAACAACTGAAGAGCTGG
CATCCTTAAATCTCAAGGAAGGAAGGAACACCGTAACCTTCACCTTTTCA
ACCTCCATGTTGGGGAAGCAGCAGGTATTTCATCCTTTTGTTGCATGGTT
CAATTAGGATTTTATGTCCATTGTTAAGATTTTATGATGTTGAAGTATAT
GCTTACTTGAAGTATGTGTTTCACAGGTTGATGCTAGAATATACTTGTGG
AGATGGGATGCTCGAATTGTTATCACAGATGTGGATGGGACAATAACCAA
GTAAGTCTAAAAGATCTGCAAGAGGTTTTATTATCTAATTAAGCATTGGA
GTCTATCTTAGTAAGATACTTTTTCCAAAGTTAATATTCAAACAACCTAA
TTGTGAATTAATTGTGAAGTACTGTAAATAATATCTGGAGAAAGTTTAGT
TGCTATACTCTCTATACTTATGTATAAATGCTAGGTCAGTCCACATCATT
CTATTGCTCTAGATTCCACTCTGTTACTTTTTAGCATTATATACTGAATA
TTGTTCTGTTAGTCTTATGATATACAATTTATATAATACTTCCAGCATAT
TTCAGAAGTCTCTGTATGTTATAGAAATCAATAGCCTCAATGCTTCCAAG
CACCCTCCTGACTCCTGTTCACTTCATGGACTGTTATAATTTCATACAAT
TGCTTGTTATTCGAACGTATACACGAAGATACATATATAATGCTGAACAA
AAATTAAATTAATCTTTGTTAACTATTACATAGTATTATTTAAATATACG
TATATTAAAATAAAATTTTGTATCATCTAATTAGGACTATTCTACATTTA
TCTAAATTGAATTTAGATATATGGTAATATACATCATAGGAATATTGATA
AATAATTGGATTAGTTTCTTATCTTCCGAGATAGGGTTCTAGTCTTGGAA
GTAATCATCCAAGGCACCTTTAGCAAACAAAAATATATGTTTGGCTTATT
ATAAAGTTTTAAAGCTATGTTTGTCTGGACAGATTACAATCGGATGATTA
TAATTCCTGCACGTAAACTTATTGTACTGAATGTACTGTAGTGTTAATTA
CAAACCTTAAATTAGTGAAGCTTCTGCCAAAACTGTCACTATCAGTCCTT
AGTCTCTAAAATATAATTATGATTAGTTGATGGCTATTTTGTTTTGCGCA
AGATTGTGTGCGAATTCTTTAGTGTTTAGGCTTTATATGTCTTTGCTAAT
GTGATAAAATATTAGGAAGAGACTGATGACAGTTACCTACTACCAACCAG
ATCTACTATTCTTTTATATATTTATAATAGAATTATTACCACCAGTTTAT
CAATACTCAGACCTTACTGGAGCACATCTTCTGTATTACAGATCTGATGT
ACTAGGTCAGTTCATGCCATTGGTTGGAAGAGATTGGTCACAGACAGGGG
TTGCACATCTCTTTTCAGCTATCAAGGTTGGCTGTGTTATATTTAAGTTC
ATTGCAAACTTTTTTTGCTAAAAAATTAAGTCTTATTTCATCAATTGTAG
TTATATTTATTGGCTCCACTTGACAATTGCTACTACTTTATAAAAGCATG
ATTACAACTAAGTTTTGGGTAGGAACTCTGTCCAGTCATGTGATACGACC
AGAATTGTCTAAAAGTGAATTAAGTTTGGTTTACTTTGCTGCAATTTTCG
AAGGTGATTTAAATTAATGATTTTTCTGTATGTTAATCATAGCAAGGTGC
AAAAACATTTAATTATATTTTTTTAATATCTTTGACAGTGTTAGAAATTT
CTGTATGATTGAGAATTTAGGGCTTATAAGAAGGCTGGCATTGATCAAAG
TTTATATTTAAATTGAAAGAAACCAGACTAGGCCAACATATGTTTGTTAT
CGTTGATGTTTTAGAACATGATAAGAGATACGTAAAATAGAAGTAAAACA
AAATAAAATAGAAGTAACATAAAAGTAAAGACAAAGTATTTTTCTAATCT
GTCGAAGTAAATAACATTTGTAGTGTTTATATGGATTGTGCGTGAACAAT
TCAAGCTAAAAAGAAGCTAACCCTGTCCCAGTAAAATCTCATCTAAACAA
ACCTATAATAACTCCTTGAAACTAGGATTTATTATAACTAAGACATAACT
AATTTATTTTGAATTGGAAGTAATAAGATTTTAAAAACAATTCAAATAAT
TTTGAATTATTTCCAGCACCCACTCTTAATTTAAAACTAATTTTAATTTG
TTGGACTTCTCATCATCACCATTTTTGTTAGAGCACTTCTCTCCACTAGC
TTTTTTAGCTGCACTTCTCACCATTTTCCATGTCTTGATGCACTTATAAT
CAATTACATACGTTAATGTTTCATAAAAAACAAGTGATAAGTAAAAGACG
AAAGTACAATAGAAGTGAACTAAAAATAAAAACAGAAGTGTTTTATTATT
TCAATTTGTAAGAATAAATTACATCCGTTATATAGACTGTGCGTGAACAA
ATCAAGCTTAAAAGTAGATTATTTCCAGCATTTATTCTGCTTAAAGTGCA
GAAAGTAAGATAATCATGTTTTACTGAATTTTCAAAAGCATAGAGTCTTT
AAGAGTTTTAGTAAGGTTAATCAGATAATAGAAACCTGGAGATTTGGGAC
TGGATTCATGTGGGGTTTAGTCCTTTTTTATCACATGTTATTGCCTACTA
AATGGAAGACAAAACTGTGTCATTACCTGTATTAAGGCTGAAAAAAATAA
AAATAGTAGTACCTTGTTGTCACACCTTAGAGCTGATTAGTCCTACATAT
GAGTTTCTATATATTCCTTTATTGGCAAGTCAAGACAAAATAGAATGCAA
GATATCTGATAAAAAAAAGCTATAAAACCATTTATAGTTCATGTCAGTAA
TTTGTCACAAATAATTCATTAATACTATTAGGCACATTTTTGCGAGAGAA
GTGTGAAAGAGGCCTTTATGAGTTAATTTCACATGAAGGCAAAGTGCTTG
TTTGATAATTTAAAGGATGAAAGTTGCAATTCACTTGAATTCCACATGAA
ACTTAAATTAGAATAAGCAATACAAAATTATATTACGAACAGATATTTCC
TAGGTTACAAGTTGCAGGCCTTGTAAATTTACCTGCCTTAAATTCTAATT
ATGAACCCTGTTTACTGAATATGTTCAAGTTAGGTACTATGTCAATAAAT
AATAAGTATCTGTTGTTTAAACTTTGTTCACCTGAATGTAACAAGTAATG
GGACCATATGCTTACTAAGTTTTCCATTTTCCTTTGCCTTGAATTATGTA
CTTCTATTTTTCTGTTTTTTTCTGATGTGAATAGCTTCAGATGAGTTCAT
ATTCTTATACCTTGACAAGAGATTAGACTTTCTTTTCTTTTTTGCCTTTT
CAGGAAAACGGTTATCAATTGCTGTTTTTAAGTGCAAGAGCGATTTCTCA
AGCTGGCCTCACCAGACAATTTTTATTTAATCTTAAGCAGGTACCTTTAT
ATTGTCTTACATTTCTCTTGCATGAAAACAAAGTTGTGGTGTTAAAAGTT
CGCATTGGAATGTATTCTAGAGTCCATTGTGTTCTTTGTATATTCGTTAT
CAGTCCTCAGACACAAGTTCTGTGCAGGATGGAAAGGGATTACCAGATGG
GCCTGTTGTTATTTCCCCTGATGGGCTTTTTCCTTCTTTGTTTAGAGAAG
GTGGGTGTTTGTTCTGAAATTGTTAGTCACTACATGTATTCTGTTTGTTG
TTGCATTATTTACCTGCACATTAATTTGTGACGATTACAAGTGAATGATA
TTTTGTTGTTAGCTTGTACCAACCTGTTTGGTATACGTGAAAAATATATG
ATCTGTGATTCCAGTCTCAGCCTCTCTTTTAATGTACTTCTGTAGGTAAC
TGCTTCATCAGTAACTTGTGTTGTACATTCGCACATAAAGTTTTTGCTTG
CAGTTACATCTTGGACACAATCAAGTATTTTTTGAATAATTATTTCATCT
TATTGTTGTCTCACTAATGTTGCTCTCTTCCAACCCTTCATTGCTAAAAC
TATTCTACCATATTATTCCTCTTATTTTATATACAAGCTTATTAATCTTC
TAGATCTCATCTTCATCACCACCTGTGATCTGTCCTCTACTAATCCTTCA
CAAGTTCCATCCTACTTATATGATAAAAAAAGGTGCGGACTCTACTACAA
AGAACTAGTCAAAGTTAAAACTGTAAAATTATAGTGAAAATTAATTATTT
TTTTTAAATTTAACTTTGATGGATATGAAGGATGGATAAGGCTCTGTTAA
AGAGTTGTACCAACAACCAAAGAAAAAGAGATAGAGCGCTAGTAGTTTTG
GCGAAAATGTGCAGGGGTTGCTTTTAATTACCAAATATTGGTGTACACAA
ACCTTACCTAGTACTAGTAGAGGTCGTTTCTGTGAGAGACCTCTGGATTG
AGCATCACAAAATCTTGATTTGAACTCGGTGGTTATTGTCGATTTCTTTT
ACGTAAGTAAGAGCATTATAATTTTGTGTGCTTTTGCTTTCTGAATAACT
AAAGTGAGGAAGTGGAAGAAAACCACTTTCTGACTCATGCAGCTTAAATT
ATCTGTTACCCTAATAGGAATTGCATTTGTTGCCAGAACTATAATAAAAG
TTCAAGTCATCTAAACAAGAGAGAAATTAGTGATGAATATAATACTAATT
TGAGGTCATATGTTTTTTATCTTAATGGTTGTGGATGTGTAGTGTGTGCA
CATCCCTTGCAAGAAGAATCCAATGAATATATTTGTTGTATTTTTGGACA
AATTAGTTGGTGCAACAGGGACAATATTCAACTAAAAACGAAAAGAGCCT
GTATATATGCCACAAGCATACTAGTATTGCATTTGTGCATTTAATATACA
AGTGTTTTGTCCTGAGTCATATGTTATTCTTCCAATTGAATTGAGACAGA
TTATACTTATCTCTGTATCGTCTGACTGTCTTTTCCTATGCAGTTATAAG
AAGAGCTCCTCATGAATTCAAAATTGCTTGCTTGGAGGTAGTTCCATGTT
ACTCCTACATATGCAAAACTTTTGCTGATTTTAGAAGTGATTAATGTGAT
GACACAAGCTATTGGCAATGAGCATGTAAAAATCTGTTATCCGTTGTGAG
GACCTATTATGCTATATGGACTGCTGAAAGATTTAAATCATTTTACTAAG
TAGATTACGCGCCAAGTAATTATTTAGTTATGCCAACTAAGTATAGCATA
TCTTGAAAGCTGTGGGGCCGTTTTGCTTAGCTTAAAATAAATTACTTATT
GCTTATCAGTAAGAAGTTACTAATAAGTGAAAAGTAACTTTTAATTTATT
TGTTTGGATAGATTTATTGATATTTAAACTTATTAGGTACAAAACTAGTA
ATAAAAATTAAAAAACAACTACAAATTAACTTTTTAAGTGATTATATATA
TACACTTTTATGAAGTCAAATTACAAATATTAAGATAAGTTGGAAAATAA
AGTTACGATTTTCAACTTCTCCAATTTCAACTTGTAAGTCAGAAGTTAAC
TTATTAGTTAGAAGCCCCAGCCAAATGCCCACTATAATAGAGAAAAAATG
TATATGAAATAAAATTTGGTAGTGTGTGTCAGTAGTGAATTACCATGATG
CATAAGGCTTATTTAACATTGTTTAAGAAAAATTTATTATCTTATTAATT
CACTTGAATACATGGTAGCGTTCAACTATATGCTTGCTTCCCTAAACAAA
CAAAGAACACATATTCTATATGCAATTGAGAAACCAATTGCATTATGCAG
GATTGTTTTTTAGAAAAGGTTACAGAAAAAAATATTTTTCACAGGGAGCA
CGTGGTGCATTCCTGTGGCATTTTTAAGACTAAATTACTGTATGCATTTG
AGCCTGATGTGGTAATTCGCAGGATATAAGGGCGTGCTTTCCATCTGACA
GAAAACCATTCTATGCTGGCTTTGGAAATAGAGACACAGATGAGTTTAGC
TACCTCAAAGTGGGAATTCCCATAGGAAAAATCTTCATAATAAATCCCAA
GGTACTGATAACATATCAAAAATATATAATGTGAAAATTGGGGTGCAACC
TTCTATCAAATTATGTACTTAGTTATTGTTATTTATCTTGAATTTATTAG
GGTGAGGTGGTTGTGAATCGATGTGATAACAAATCATATACTTCCCTACA
TGATCTCGTAAATGGCATGTTTCCTCCCAGGCTCTCGTCTGAACAGGTTT
GTGACTCTAGACTTTTATGTTTTGCTACCATTATTCTTTAGGAAACTACT
CGCTCATGGGAACATGTTTAACTTCACTTAGACACATCACACATCAGCTG
AAGATTGTTTTGTAGTGTAGGATGCTTGCACAATGTAG

Sequence Length:

9138

Sequence Checksum:

3d2acf32c8acff6e4255452278f96f58

View location in JBrowse:

DCARv2_Chr3:1336048..1345185+

Cds:

>DCAR_008790cds ATGTATGCGGTAGGGAGGTTAGGGAGCTATATCTCACGGGGTGTGAACAC GGTTTCTGCACCGTTTCATCCGTTTGGTGGTGCTGTCGATATTGTTGTGG TTGAGCAGCAAGATGGTACCTTTAAATCATCACCTTGGTATGTGCGTTTT GGGAAATTTCAAGGAGTTTTGAAGGCAAGGGAGAAGATTGTTGACATTAA TGTTAATGGTGAGGATGCAAATTTTCATATGTTCTTGGATCATACAGGAG GGGCTTATTTTGTTAGGGAGGTAGATGCAGAAGATGGGAAGTTATTATTA TCATGTACGTCTTCATGTGAAGAAATGGTTGAACTGGAAAGGAGACCTGC AAAGTGCAATAGTTGGAATGAAAGCATTGATTCATCAGGCGTAGTTACCC GGCTTGAAGTAAGCAATGGTACAGTTGTTTCCAGGTCTGGCTTCATGGGA CTTGTCTTTGGAAGGAATTCAGTGAAAGAGAATAGATCTGAGAAGGATGA GGATGCTGCTGAAATTATTAGGGCAGAATCTTTAGAGCGTGCCGAGATTG CTGCGGATCTGTTGGAGGTAAACTGGTCTACCAATCTTGCCTCCGTCAAG AAAGACAAGGATAGCGATTCACGTGTATCTGTGCCAGACATGTTAGATGG TGCAGCAAGTACAAATGTTCCGATAGATAAGGATTCTTGTTTGTTAGAAG GTGGTGCAACCAATGTGGTTAATAAAACATTTCAACGCCAACCAACAGTA TACTATGAAATAGATTCGTCGGATGTTGATTCAGATGGCAATGATGAAAA AGACAATGATACGATTTGTGTAAAATCCGGTGGAGTCATCATGCAGGGAA TAACTTCACCTGGCCCAGATACAAGTACTGAGGATACTTCAGAAGTAGAA ACTTTACATGTTCTAGGTGATAGCACTTGCAGTGATGGGAAGATGCATGA TGGAAGTAGTGAAACAAAATCACAGAACGGAGTAGTGAAAGAAATCTCTA CTGAGCCACTTGCTTTTAATCAAATAGATGATTCAGCCAAAGAAATTGAC TCGTGTAGCACACTCACCAATATTAGTAGCAGTGCCAATGACCCAATATC TTCAGTTCAAGGTGATGGGAAGAGGCTCCAACCACTTGGTAAACGTTTCT GTGTTTCTGAAGAAGTTGGTATTAAATTTGTTAAAACTGAGGAGATGAGT AACTCAACGTCAGCAAGTTTAGATGAAGAACAGTTCCTTTTTAGTGATCT CGACGACTCCAAAGTAAGACACATAGAATGCATGGAGGTAATTCCTATGA ATCTGGAAGACAAAGAAAAAGATTTATCATTTACAGCAGAAGACAATGAA TCCGTGAATGGATCTTCTCATTCAGAATTTGAGTCTCCAGTAAATTATAC TGAAGAAGAGTTACCAGTTGATGGTGAAGAGTCGAGAGAAGAGGCTACTG AAATATCTAGCCACATTAAGATACCTAGAAATAATCAATGTTCAGGCCAG GAAATAGAGGGAATGGCCGAGTCTCTTCCTAACATGCGGTCACAGTTTGA TGAATTGGACAAAAATAATGCTCGTCATACTTTAGGCCATTCCCTTGATT TAAATCCCAAATTATCAAAGTGGGCACTGTTAAGGAAAAATGTGGGAAGT AGCATAAATTCAGACGTGGGGGGCGTAAATAGTTTATCAAATTTACAGCG CATGACTAAGGATGCTCAAGTTTTGTCAGAACTGAAAGCTACAGACACCA GCCCTGCAACTGGGGATTCTTCTAAAACTGTTGAACTCTCCTCGAGTGGA AACTGGGGTCAATGGCTCTTTAAAAGATCCAGGAGCATGAGAGATAAACC ATTATCTCTTGATCGCAGAAGAAGCATTGATGCTGAAATGTCTTCAGCAA GCACTGGTAGCATTGATGGGGAGAAAGAAGTGCTTGATAAAGAAGTGCCC AGTAAAGAAGTTCCAAAACCCAAAGCAAATAAGAAGAGAATTAGGGTAGT CTCCCCAACAACTGAAGAGCTGGCATCCTTAAATCTCAAGGAAGGAAGGA ACACCGTAACCTTCACCTTTTCAACCTCCATGTTGGGGAAGCAGCAGGTT GATGCTAGAATATACTTGTGGAGATGGGATGCTCGAATTGTTATCACAGA TGTGGATGGGACAATAACCAAATCTGATGTACTAGGTCAGTTCATGCCAT TGGTTGGAAGAGATTGGTCACAGACAGGGGTTGCACATCTCTTTTCAGCT ATCAAGGAAAACGGTTATCAATTGCTGTTTTTAAGTGCAAGAGCGATTTC TCAAGCTGGCCTCACCAGACAATTTTTATTTAATCTTAAGCAGTCCTCAG ACACAAGTTCTGTGCAGGATGGAAAGGGATTACCAGATGGGCCTGTTGTT ATTTCCCCTGATGGGCTTTTTCCTTCTTTGTTTAGAGAAGATCTCATCTT CATCACCACCTGTGATCTGTCCTCTACTAATCCTTCACAAGTTCCATCCT ACTTATATGATAAAAAAAGAAAACCATTCTATGCTGGCTTTGGAAATAGA GACACAGATGAGTTTAGCTACCTCAAAGTGGGAATTCCCATAGGAAAAAT CTTCATAATAAATCCCAAGGGTGAGGTGGTTGTGAATCGATGTGATAACA AATCATATACTTCCCTACATGATCTCGTAAATGGCATGTTTCCTCCCAGG CTCTCGTCTGAACAGGATGCTTGCACAATGTAG

Pep:

>DCAR_008790pep MYAVGRLGSYISRGVNTVSAPFHPFGGAVDIVVVEQQDGTFKSSPWYVRF GKFQGVLKAREKIVDINVNGEDANFHMFLDHTGGAYFVREVDAEDGKLLL SCTSSCEEMVELERRPAKCNSWNESIDSSGVVTRLEVSNGTVVSRSGFMG LVFGRNSVKENRSEKDEDAAEIIRAESLERAEIAADLLEVNWSTNLASVK KDKDSDSRVSVPDMLDGAASTNVPIDKDSCLLEGGATNVVNKTFQRQPTV YYEIDSSDVDSDGNDEKDNDTICVKSGGVIMQGITSPGPDTSTEDTSEVE TLHVLGDSTCSDGKMHDGSSETKSQNGVVKEISTEPLAFNQIDDSAKEID SCSTLTNISSSANDPISSVQGDGKRLQPLGKRFCVSEEVGIKFVKTEEMS NSTSASLDEEQFLFSDLDDSKVRHIECMEVIPMNLEDKEKDLSFTAEDNE SVNGSSHSEFESPVNYTEEELPVDGEESREEATEISSHIKIPRNNQCSGQ EIEGMAESLPNMRSQFDELDKNNARHTLGHSLDLNPKLSKWALLRKNVGS SINSDVGGVNSLSNLQRMTKDAQVLSELKATDTSPATGDSSKTVELSSSG NWGQWLFKRSRSMRDKPLSLDRRRSIDAEMSSASTGSIDGEKEVLDKEVP SKEVPKPKANKKRIRVVSPTTEELASLNLKEGRNTVTFTFSTSMLGKQQV DARIYLWRWDARIVITDVDGTITKSDVLGQFMPLVGRDWSQTGVAHLFSA IKENGYQLLFLSARAISQAGLTRQFLFNLKQSSDTSSVQDGKGLPDGPVV ISPDGLFPSLFREDLIFITTCDLSSTNPSQVPSYLYDKKRKPFYAGFGNR DTDEFSYLKVGIPIGKIFIINPKGEVVVNRCDNKSYTSLHDLVNGMFPPR LSSEQDACTM*