Resource Type:
Gene
Organism:
Name:
DCAR_009062
Identifier:
DCAR_009062.gene
Locus Tag:
DCAR_009062
Publication:
Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Relationship:
| Relationships |
|---|
| The mRNA, DCAR_009062, is a part of gene, DCAR_009062. |
| The genetic_marker, MK009982 3_4075544, is located in gene, DCAR_009062. |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
Transcripts:
| Transcript Name | Identifier | Type | Location |
|---|---|---|---|
| DCAR_009062 | DCAR_009062.mRNA | mRNA | DCARv2_Chr3:4074900..4088244 |
Sequence:
ATGTCTAGCTCGAGAAAAGCTTTGGAACCTGCATTTCAGGGTGCAGGGCA
GAAACCGTATCCTTAATTAATGTCTTAAAAGAATCTATGTTGGTAGCAAT
GTTGTTCTTGTTAGTTAGCGTATCTGCAAAATCGTCCTATGTCAACACGA
TATGAAAAATCCATTGATGTAAATTAATGTTCTTAACTTAATGTAATTTC
TTGATTCCTGATTTTCACGTTCTCTTTTACATTAGTTTGTACTTAACCCT
TACTAGAGGAACTGAGATATGGAGAATTGAGAATTTTGTGCCAGTAGCAT
TGCCCAAATCTGATTATGGCCGATTCTATTCAGGGGATTCGTATATAGTC
CTGCAGGTTATTATGGCTTTCATGCAGTCTTCTTATGTTTTCTCTTTTGT
TTCAAACAAAGTCAATAATTAAAATCATACTACTTGCTTCATATTGTTTA
TTTGCAGACAAGTCCAGGTAGGGGAGGTGCTTATTTGTTTGACATACACT
TCTGGCTAGGAAAAGATACAAGCCAGGTAAGTTATTATCTCTTTCTGTTG
GCATTTTAGTCCTTTACTACTAGCTGGAAGTTTGTTCTAACAAGATATAT
AAAACTCATCATAGGATGAAGCTGGAACAGCAGCTATAAAGACTGTAGAG
CTTGATGAAATGCTTGGTGGGCGTGCAGTGCAGCACAGGGAACTACAAGG
TCACGAGTCGGATAAATTTTTATCGTACTTCAAACCATGTATTATACCAC
TAGAAGGGGGTGTTGCATCAGGATTTAAGAAACCTGAAGAGGAAGAGTTT
GAGACAAGATTATACGTCTGTAAAGGAAAACGAGCTGTTAGATTGAAGCA
GGTGTGACTTCGGCAGCCCATGAGAAAAGTCTTGCGGATGTAACAAACTA
TGTTTGGAGTATAATACGATTTCTTTCCTTATCCAGGTCCCCTTTGCTCG
GACTTCGTTGAATCATGATGATGTCTTCATACTGGACACTGAAGATAAAA
TTTTTCAATTCAATGGCTCAAACTCCAATATTCAGGAAAGGGCCAAAGCA
TTAGAAGTGATTCAGGTTTTAAAAGAAAAGTATCATGAGGGAACGTGTAA
TGTCGCTATTGTTGGTATGAGGTTGATTTTAATGTTCCTTCTTTTCAATT
ATTAAGCATAGTCAGGTCATTTGATCTGGAACTTGTTTATCTCGGTTTCT
ATTTTATATCTTTTTAACTCATTCATTACTGTGGAGTTGTGGATCTGAAT
CAGCATTCGTTACTTATATGCGTGTGTTATACCTATGCACCAGATGACGG
AAAGCTAAAAACCGAGTCAGATTCTGGTGAATTCTGGGTCCTATTTGGTG
GCTTTGCTCCACTTGGTAAAAGAGTTACCAGTGAAGACGATGTTGTTCCT
GAGAGAAAGGCTCCTGAACTATACAGGTAATTCTGTTTCCTGGTTTCAAT
TAACATTTTCTTTTATGTTAAACACCTTTCTTAATAAGTCAAAGGACTGA
GGAGTTGGACATTAAAGTTTAATGGGTTAGATCATGTGATTTTTCTGTGT
CTCCTGCCTATCAAAAATTTCTTTCTACCATGCACTCATATATTTGTCCT
ATTCCCGAAATAATTGACAAATTGCTCCACAAGAGTTTATGAGAGGTTTC
TAATTTATGTAAAACAATTTGGTTTTTGTGTGGGTTTATAATGTATACAA
ATAAGGCTAGACCCTGAACCTGGTTTCTTAAATCTTGCCAAGGACTTAAT
CTCTGATAGAAGTTACTGGAGATGACGCACTAGGATAGTGGATATCTTCA
CAGAGTATCAAAAAAAGTACTCCAACACTATCCTACTGATTACCTAAATC
ACTAGCACAATCCAAAATTTTTTAGCCATTACCTATTTTTAGGTAACCTC
TAGTCATTACCTATTTAATATTTATGAATAAAATATTCATTTACCTCATT
TTGTCTTTATCTTTCCCCTCCTTTTCCCGTTCTTTCCCTCAAATTTATTA
TTAAAATAATAATAGGGAACAAAAATAGGGATTGCTACTGGAGTTGACAT
TAAAAGTAGATTCCCTAAATCACTAGGACTCAGTAGCACTCATTATTCTA
TATTATTAATTATTAATAGGTGAGATAGGTAACCTATTGGACTTGCTCTT
AATACTTTGCAGTCGCTCCTACTTCTTTGTACTATACTTGTTAGAATAGT
GTAATGGGTTTAACATTTTATCTGTTGTATTGTGATAATTCTGTGCAGTT
TCTAGTTTAATAGTTATTTAGATCTCTATAGTGTTGTAATTTTAAATAAT
ATTTGCATATTCTAGTAACTTTTAAGGAATTTTTTGCTTCATGAAAACAG
TCTCTCTGCTCGGAGTAGGGATAATGTCTACTTACATTTTACCTTGGGTA
TGCTTGGTTTGGGTTGATTTAGAAATAAGCTAAGTTCTGGTCAGTAGCTG
TATCTGATTGTGTATTACTCTCTTATCTGTAGAATTTTTTATTGTTGATG
TATGATCCGAGGCGTTGAAACCTTTATTGAATTTTGTTGCAGCATTGTTG
GTGGTCAAGTCAATGCTGTAGCTGGTGAACTGTCCAAATCTTCATTAGCA
AATAACAAATGTTTTCTGTTAGATTGTGGTGCTGAAGTATTCGTGTGGAT
TGGTCGGTTAACAAAATTAGAAGATAGAAAAGCTGCTGTAAAATCCGCTG
AGGTAGTTATATAATTCAGATCACCATGATAATGATGCTAGAATGATTCC
ACACCTTATCTATTTCATTCCCTTTCTAAATAAGCAACCTTGGGTGATTT
TTTTAAAGGATTTTATTGCTAGTCAAAATAGACCAAAGTCAACATATGTA
GCCCGTCTTATTCAAGGACACGAGACAACTGCATTCAAGGCCAAATTTGA
TTCATGGCCTTCAGGCTCGGCACCCTCTGCTCCCGAGGAAGGTAGAGGAA
GAGTTGCAGGTAGATACTAATTCATACACATCTTATCATANTATTCATTT
ACCTCATTTTGTCTTTATCTTTCCCCTCCTTTTCCCGTTCTTTCCCTCAA
ATTTATTATTAAAATAATAATAGGGAACAAAAATAGGGATTGCTACTGGA
GTTGACATTAAAAGTAGATTCCCTAAATCACTAGGACTCAGTAGCACTCA
TTATTCTATATTATTAATTATTAATAGGTGAGATAGGTAACCTATTGGAC
TTGCTCTTAATACTTTGCAGTCGCTCCTACTTCTTTGTACTATACTTGTT
AGAATAGTGTAATGGGTTTAACATTTTATCTGTTGTATTGTGATAATTCT
GTGCAGTTTCTAGTTTAATAGTTATTTAGATCTCTATAGTGTTGTAATTT
TAAATAATATTTGCATATTCTAGTAACTTTTAAGGAATTTTTTGCTTCAT
GAAAACAGTCTCTCTGCTCGGAGTAGGGATAATGTCTACTTACATTTTAC
CTTGGGTATGCTTGGTTTGGGTTGATTTAGAAATAAGCTAAGTTCTGGTC
AGTAGCTGTATCTGATTGTGTATTACTCTCTTATCTGTAGAATTTTTTAT
TGTTGATGTATGATCCGAGGCGTTGAAACCTTTATTGAATTTTGTTGCAG
CATTGTTGGTGGTCAAGTCAATGCTGTAGCTGGTGAACTGTCCAAATCTT
CATTAGCAAATAACAAATGTTTTCTGTTAGATTGTGGTGCTGAAGTATTC
GTGTGGATTGGTCGGTTAACAAAATTAGAAGATAGAAAAGCTGCTGTAAA
ATCCGCTGAGGTAGTTATATAATTCAGATCACCATGATAATGATGCTAGA
ATGATTCCACACCTTATCTATTTCATTCCCTTTCTAAATAAGCAACCTTG
GGTGATTTTTTTAAAGGATTTTATTGCTAGTCAAAATAGACCAAAGTCAA
CATATGTAGCCCGTCTTATTCAAGGACACGAGACAACTGCATTCAAGGCC
AAATTTGATTCATGGCCTTCAGGCTCGGCACCCTCTGCTCCCGAGGAAGG
TAGAGGAAGAGTTGCAGGTAGATACTAATTCATACACATCTTATCATAAA
AAACTGCAGATATTTGTGGAACCGTAAAAATCAATTTGACTAGGAAACTC
TTTGAATACTTGTAGCTTTTCTCAAGAAACAGGGTGTTGCCTTAAAAGGA
TCTTCAAAGAGCGCTTCTGTTAAGAGTGCCCCCGTTAACGAGGAAATCCC
ACCTTTGCTTGAAGGAGATGGAAAAACTGAGGTTGGCTTTTTAGACATTA
TGGTGCAGTTAGCACCTAGAGGGTTTATTTTATATAATGAACAATGAGAT
ACCCAAAAATGGTTTGTATACAAGTTAAGTTAAGATTACGGTTAAATAAG
CCTAATTGATAACTTAACATGTTGAGCTATCTAAATGGTAATAATAAGAT
AAAATAAAATTGATCAAGCTCAAGCCGATCAGTGCTCCGAAGGAGTTCCC
TATGTTAATTAAATAAACAACTGTAGTTGAGCTTGGTTCCTTTGTTTACA
CCTACAGTTTGAGCAATCGGGCATGAGTATTTATGGTAATAGAACAAATC
CAGTTTCAAAAGTGCTAAGCATGGCTTGACTTTAGAAACTATGTTCATTA
ACAGACCTACTTAGTAACTTACCTACCCATTAAGGTTATGTAGATAAGCA
AAGTTCGTTCTTCGAAGTAAATAATTCAGATCCTATAAATGTTAATAACA
CACACAGAACTACATGGAAATATGAATCTAAATAAGTCAAGTTATTTTAA
CCACTTCATAGATATAAAAACAAGTATCTTCCATGTACAAACAAAGCCAT
AGAACTGAGAAAAGTATCTTCACTTAATTAAAAGTATATGATTTTTATAG
ATTAATATCAATGAACTACAGGCACATCTACACCTTTGTGGTTTGCAATC
TTATTTTATTATGGATTGACTTAAATACACACACACACAAATTTGATTAA
TATATTTACAGAGATCAGCAATTTTAACTACCTTGTCGGTACTTGTGTGG
TTAATACACACACACATATGTATGATTCTCATGTCAAATAGCATGTTCCA
GGAGTGAATAATTGAATTTTCAGGTGTGGCACATTGAAGGAAGTGATAAA
ACTCCAGTGCCAAAAGAAGACATAGGTAAATTTTATGGTGGAGATTGCTA
CATTGTTCTCTACACTTATAATCATCAGCAACATCAACATGACAAGAAAG
AAGATTACTACTTATGCTACTGGATTGGGAAGGATAGTGTCGAGGTAATT
TATTTCCCATTGTCATCATCTGCAACAGAAATATTTGAAAGCCAAGACAC
GTGAATGCATATCTACTGAAAAATAATAAAAGACAATTTATAGGTGGGTG
TACGGAAGTGTGTAATGTAAGGAATCAAAGACCTTATGTTGTATTCTCAT
CACACACTTCTTGGTCAATATTGATCAATAACATAAATGGTGAACTACGA
GATGTCATAGTTGATGTGCTCTTGCATCACAAAATACCAGCACAAACTGG
TTATAACTAGCAATTATCCTATCATTTTTTTCCTTAGATTAGCAGTTTGA
TTTTTATTGTTAGCAACCTTTGCAGCTTCCGATTGTCTAACTACACTACA
TACTACATAGCAAGTATATGTGAAGTAATTTAGCACTTGGCATTTTGCTT
GTGGCAGAACTTTTACCATACTAGTGTCATTTCTTGCATGTTTCTGCAAC
GTGTTCAACTTTATCCTCTATAAGGATTAGGTTTTACATGAATATTTAAT
GATAGACATAAATATTTTGCATGTTTAGGAAGACCAAAAGAATGCAGCTC
AATTAACTGGCACCATGTCTAGATCACTGAAGGGACGACCTGTGCAGGTA
CCTTCATCATCCACCACTATGATGAACATAATTAAAAGAAAGTATGTAAT
AATTAATGCTTTCTCAGGGTCGTATTTATCAAGGGAAAGAACCACCACAG
TTTCTTGCCATCTTTCAGCAGATGGTTGTCCTTAAGGTATATTGATAAGA
TCTTGTTATTGCTAAATTAAACTTCTATGTGGTGATGCTTATGCCCATTC
TCGGACCTCCCCCCCCCCCAATCTTTGCCCACGCGGGTGAGCGTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTC
CCTCCCTCTCTCTCACACACACGCACACAATATGGCTTTATTTATGCAAT
TTCATTTTTTCTTAGGGAGGAATAAGTTCTGGCTACAAAAATTATATTGC
CGAGAAAGGGTTGAAAGATGAAACTTACAGTGGTGACTGTGTTGCACTGA
TTCAAATATTGGGGACCGCTGTGCATCAGAAAAAAGCTGTGCAAGTTGAC
GCGGTATGTTCTATAAGTGGTTTTGTTTTGTCTCTTAGTTTATATATGTG
GGCACTGTACTTTAAACTTTGTAGTTATGTGTACTCTGTCATTTAGGATC
CTCAAGCGTTTTTGGTATATGTGTTTCTTTAAAACTCAGGTGGCCACCTC
CATGAACACTAATCATTGTTTTATTCTGCAATCTGGCTCGACTATGACCA
TCTGGAAAGGAAGTAAGAGCACACCAGAGCAACAACAGCTAGCCATCAAA
GTTGCAAGCTTCTTGAAGGTATGCCCATGGCGATGATTATAACCTGGGCA
GACCATGTACCTTTATACTCATGAATATGATATCTTTGAAGTAAAGTTCT
AGTCATATTTTACAGTATATTCGTCGTATTTTACATGTAGTTAGACTTAC
AATACCATGGAACCGGAAAAGAATTCGAAATAAGGTGATAGCTCAGATTA
ATCAAATGACTTGCATGTTTTCTGGGATAAGTATAAGATTTTTGAAAACT
TAACCAATTATGTGGGTTATAACTAGATTCCAACCTTGTAAGTAGTAAGA
ATATATAAACTCCATGGGGGACCGCTTAACATTGATTTGTGCAGCATAGC
TTAGCCATCTTTTAACCTTTGTCATTTGGCTATTAAATTTTGCTGACTGA
CACTTGAGAATTTTTGCAACTGAAAAAAGAGAAATATTAGATTTCCCTGT
TTATAATAAACATTGTATTGGAAGGCCAAATAGAATTAACTTTAATCGTT
TTTATATTTGTACATTTAGCCTGGTGCAGATAAGAAAAATTCTAAAGAAG
GAACTGAACACTCATCATTCTGGTCTGCTCTTGGAGGACGAAAGAGTTAC
ACCAGCGAAAAAGAGTCTTCGGACTTCACTCGAGATCCCCACTTGTTCAC
ATTCTCAATTGATGAAGGTGGTGTATCTTTAAAAATAAATTGTTTAAAAA
ATAACTCACACTCATTTACTGCATTAAGTTTTAAGACAACTGTTATAACT
TTATCTACATATCTGAAAGTATAAGTTTTTTTATACAAGCTGGTATCCCT
CTTATTTACTTTTTAACTGACAACTCCTGCTGCACTGTGGACCTCCCCAG
GAAAATTAGAGGTAAGAGTTATTTGTCTGATTATGCTCCATGATATCTAA
CTTAGACTCTTAACTCTTATTAGCTTTATAGTTTTATGTTCTATAATCGA
CAGTTCAAGGAAGTCTACAATTTTTCTCAAGATGACTTGTTGACTGAGGA
TGTAATGATACTCGATTCACATGCTGAGGTGTTTGTCTGGGTTGGTCAGC
GCGCAGATTCCAAAGAAAAGCAAAATTCGCTTGAAAACGGTCAGGTACTG
CTAGATTAATCTGAGCTTTGCAGAGATGATGCGTTTCAATCTGTACTTGT
ATCAACCATTAAAGATCATTGCAGATATACATTGATATGGCTGTATCTTT
GGATGAGTTGTCCCCACATGTTCCATTTTACAAAGTTACGGAAGGAAATG
AACCATGCTTCTTCACGTCATTCTTTTCATGGGATCCTTCTAAAGCCAAT
GTATGTCTTGCATATTCAACACTTATCTTTTTCATATTAATAAATTGATT
GCTTCTACATAGTTAAATTTATATTTTCAGCAGTGATGATGAGGTTAAAA
ATGATATGAGGTAAACAATGGTCACTTGATTGAAAGCACGCAGACAAAAA
ATGAAAAGAAAAAGAAGACTGAATCAAAGTTATAGAACTGGGTTTAGGGT
TTATGGAGATTATTAGCAAACCAAGAGGTTTGCCTTTCTATTCGCACTAC
AAAAATAAACACAAGGCTACTATATAAGCACTAATATAGAAGTTAAAGGG
ACACAGAGTGGAATTTGAACAATAAAAAGTTGCTTAAGCAATTATCAATG
ATGTTTCACTAGTATTCTTTTTTTAAATTTTCATCGGTGTATTCCTCCGA
AATATCCTCTCCAAAAATAATCATTTGAATTGGAATTGATCATCCTGCCC
CATGTTAAGTCAGTTAAGAAAGGTTCTTTGCATACAGGGAATGTACTTTT
AAATTTTAAAATTCCTTCTGATATATGAGCCCCTTGTTACTGTTGTGATT
TTATATGTTACCATATTATGCTAGATGCGTATCTCTTTTTATAGTGATTC
TTTTTTTTTTTTCTATATTTTTTTGACTTCCTTTCTCCCCTGGATGCAAA
ACAAGGCTCATGGAAATTCATTTCAAAGGAAAGCTATGCTACTCTTTGGG
ACTGGTCCTGATGCAGAGGTAAACCCTTCAATTACTCCTTATTTTGAACT
CTTCAAATATTACTCTTTACTAAAAGTAGAAACACAGTTTTGTTGGTACC
TCGTGTAATACTAAATTTTGGCTTTTCTTAAAACATTTCTCTAGTAAAGC
AAGTTTGTATATAGGTAGGGTATAATGTTCTTTGTCATGCCTTCAACTTT
GCATTTAGTTGATAGTTTGGGACTAGTCATGCTAGTGAAGTACACACTAA
ACTATGCCTCTTTGCATTTAGTTCATATTTTGGGACTAGTCATGCTAGCG
AGGTACACACTAAACTAAACATCCATGTAATGCACATAATATATTTCAAA
CAATTAATTTAAATAATTTCAGAAGCAACAGTTAATTGTCATTTTCTTAT
ATGCTTTCTCCTCTTCTGCCACGTTCTTGATCAAGCATAATAATATTATT
TTAAATTCGCACTTGTCACAGTTGGAATTGAACAAGTACAATTATTTATG
AAAGAAATGTGATCCAAATCTATGCAAGGTCATATAATTGATATCATTAA
TGTTTTATTATTAATCGAATATATAAAGAATAATCGAAACTAGGATACAA
CCATAAAAAAATGCATTCAGTTGTTTATATCTTTAAATTTTTATATATAG
GTTCGGTATAATGTTTTATATTTGCCTTGGTGCTTATGATCTTGCAAGAA
GTAACATATAACAAGATATCTAATACTCATATTATTTCGAAATTAGACAA
ATGACGGGGTACATACTCAACGAGCTGCAGCTTTGGCTGCTTTGAACTCG
GCATTTAATTCAACTTCTGAGACTAGTCAGGCTACCGAGGTAAACGCTAA
ACTAAACCTCCATTAAATGCACATATATATCAAACAATTAATTATAGAAT
TTCAGAAGCAATAGATAATTCTCGTTTTGTTATATGCTCCTTATTCTTCT
GTTCTTTTGTCGGTTTCTGATCAAGCATGGTTGTATCATTTTAAATTCGC
ATACTTTACAGTTGGAAATGAACAAGTGCAATTTATTTAAGAAAAAAATG
TGATCCAACTCTATGTCAGGCTCATAATTGATATCATTAAAATTTTAATA
TTAATCCAATGTTTAGAAAATAATGAAAACAAGGATACAACCAAAGGAAT
GTGCATTTAGTTCTTTATATATCTTAATACTTTTTCCTAGGAAAGACTAA
AAAAGAATGTTGTACATTGATAGCATATAATGTTTATTATCTTATAATGA
AAACAAGGATACAATCAAAGGAATATCCATTTAGTTGTTAATATCTTAAT
ACTTTTTCCTAGGAAAGACTAAAAAAGAATGTTGTACATTGATAGCATAT
AATGTTTATTATCTTATAATGAAAACAAGGATACAATCAAAGGAATATCC
ATTTAGTTGTTAATATCTTAATACTTTTTCCTAGGAAAGACTAAAAAAGA
ATGTTGTACATTGATAGCATATAATGTTTATTATCTTATAATGAAAACAA
GGATACAATCAAAGGAATATCCATTTAGTTGTTAATATCTTAATACTTTT
TCCTAGGAAAGACTAAAAAAGAATGTTGTACATTGATAGCATATAATGTT
TATTATCTTATAATGAAAACAAGGATACAATCAAAGGAATATCCATTTAG
TTGTTAATATCTTAATACTTTTTCCTAGGAAAGACTAAAAAAGAATGTTG
TACATTGATAGCATATAATGTTTATTATCTTATAATGAAAACAAGGATAC
AATCAAAGGAATATGCATTTAGTTGTTTATATCTTAATACTTTTTCCTAG
TAAAGAAGAATGTTGTACATTGATAGCATATAATGTTTTATGTTTACCTT
GGTGTTTATTACTTATCTTGCAAGAAGTAACGATAAAACAAGATATTTAA
TTACTCGTATTATTTCAAAATTAGACAAGTGAAGGAGGACATAGTGAAGG
AGGACATACTCAAAGAGCTGCTGCTTTGGCTGCTTTGAACTCGGCATTTA
GTTCTTCTTCTGAGACTAGTCATGCTACTGAGGTAAACACTAAACTCCAT
GAATTGCACATAATATAAACAGTTAATTTGAGCAATTCAGAAGCATCATA
TAGTATTCATTTTGTCATATGCTCCATCTTTAGTCAAACTCTGACCAAGT
ATAGTTGTATCATTTAAGTTAGCATGCTTTACGGTTGGAACTGAACAAGT
GCAGTCAATTTTAGAAATATATATGATCCAACTTTGTGTCATGGTCATAA
TTAAAATCATTTAATATTTTAATATTTATCAAATATGTTGAAAATAATTG
AAACAAAGATACAACCATGGAGAATATGTATATACTTGTTTATGTCTTTA
AACCTTCCTATAGTATAAGGTTGTATAAGGTAGGGTATGATGTTTTATTT
GTGCCTTCATGTTTATGATCTTGCAAGAAGTAATGAGATAACGAGATCTT
TAATTACTTGTATTATTTCTAATTTAGAACAAATCAAATGAGACAAATCA
AGGAGGACATACTCAAAGAGCTGCGGCTTTGGCGGCACTGAATGCTGCAT
TTAGTTCATCTTCTGGGACTAGTCAGGTAAACACTAAACTAAAGCTGCAT
ATAATGCACATAATATATTTTAAACAGTTGACTTAGAGAATTTAAGAGTA
GGAGATAATTACTGTACCATTTCTTTACATGCTTCCTCTTTTGTCAGGTT
TCTAATATAAGTATAGTTGTATCAATCTAAATTTGCATACTATATGGTTG
GAACTAAACAAGTGTAATTAATTTAGGGTGCTGATATATGCACACCCTAT
ATTTATTTCAGATCAAATTTTCCCTATTTTTTTGCCAAATAAGTAGTGTT
GATGATATATGCATAAATGAAATTAGAGATAATTTGGTCCAAAAATAAAG
TTAGAATGTGCATAAATAAATTTAGAGTGTGCATATATCAGTACCCTTGA
TTTAAGAAAGAAATGTGATCCAACTTTGTGCTAGAAACGTCATAGACTCA
TAATTGCTATCATTAAAATTTTAATATTAGGGTTGCGCTCAGGAGAGAAC
TCATCTTTAAAATATAACTTTAGAACCACTGGGTTCTGCTGTAGAACCCT
AAATTTTAAACAGATTTTCAGGATCTAAATCTAAATACGTGTTTTTTGCA
TCGTTGTGTGTGTTCAAAAATAATTTTAATATATGATACATAAACACGAC
ACTTTTTACATGTGCAGTTCTTCTGCAGAACTCTTATTAATACTAGAAGG
TTCTAACGGTTCTTAGGCTAAGGGTTCTAAGAGGAACATGGCCCTTCAAT
ATTAATCAAATATATTGGAAATAATGGAAACAAGGATACAACAATGGGGA
TTATGCATTTACTTGTTTATATTTTAAAACTTTTTCCCAGTAAAGGAGAA
AGTATTATGTTGGTAAACATTGTTGTTTTTATGCTAACCTTGTTGTTTAT
GATCTTTTAAGGAGTAATTACATAAATTGATATTTGGTTAATCAAATTAT
TGCAAAATTAGGATAAATCAAAAGTGACGAGTGGAGGAGGACATACTCAA
AGAGCCGCGGCTTTGGCTGCTTTGAACTCTGCATTTAGTTCATCATCTGA
GCCTAAACGGGCTCCTTCTCCAAAGCCAGCAGGAGCCAGTTCGGGATCAC
AAAGAGCGGCTGCAGTAGCTGCCTTGTCTTTTGTTTTTAGGGCCAAGAAT
AAGGTTTCACCTCCAATATCTCCGCGTCAATCCAGTAGAAATACACCCAC
AGAACCAGTGATCTCTGGTATGAAACTTTATTTTATCTGTACTGACTAAA
CAAGTAAATGGGAGATAAATTTTGTAAGGCACTATACATATAATAGAAAG
CTTTGTAGCAATGACTAATCTAGAGGACAAAACATTCGCATGCAGTTTGG
TTCCACCATAATGGTTTATTACATTAAAGTACCAAAATTCATTGAAAACA
ATTACAGGAAACAGTAGAACTTTTAATTATGATAGGTCTTGAATTCCCTA
CTTATCATCTTATGTACCTGTCTTGTAAATGAACTATTGCATAAAATCAT
TTATGGCTAATATACAAATGAGGCTATCCAAACCTTTTATTTTTTATTAA
TGTTCTTTATTGTGTTATTTGCGTACTGTAGGAAGTAGTGAGAACTTACC
CGAAGTTGAGGATCCTACAGAAACTCATACTCCTACTGAAACTCAAGTTG
AGGAGGCTGAGACTGTTGAGCCTGTGAAAGAGAGTAATGAGGAGTCAGAA
CCAAAACCAGAGCCCGTGTCAGAGAGTAACGAAGAGACAGAATCAAAACC
AGAGCCTGTCTCAGAGAGTACTGAGGAGTCAGAACCAAAACCAGAACCCG
TCTTAGAGAGTACTGAGGAGTCGGAACCAAAACCAGAAGCAGAGCAAGAT
GAGGAGAATGGTAGTGAGAGTGAAAATACATATAGTTATGACCGGTTGAA
ATCTAATTCTGATAATCCAGTCACTGGAATTGATTTAAAACGAAGAGAGG
TTGGTTGGTTATGCAGTTCTAACTCGAGCTTATATGTATCCCTTTTTTTT
CCCTTTCTAATTCTTTCTTTCTACTTTCAGGCTTATCTTTCTGACGAGGA
ATTCGAAACCATATTTGGGATGTCGAAAGAAGCATTCTCTAAGTTTCCTA
GGTGGAAACAAGACATGTTAAAGAAAAAACATGATCTCTTCTAG
Sequence Length:
13344
Sequence Checksum:
2eafa70a2203247ae60a5c66251145f1
View location in JBrowse:
Cds:
>DCAR_009062cds ATGTCTAGCTCGAGAAAAGCTTTGGAACCTGCATTTCAGGGTGCAGGGCA GAAACCTTTGTACTTAACCCTTACTAGAGGAACTGAGATATGGAGAATTG AGAATTTTGTGCCAGTAGCATTGCCCAAATCTGATTATGGCCGATTCTAT TCAGGGGATTCGTATATAGTCCTGCAGACAAGTCCAGGTAGGGGAGGTGC TTATTTGTTTGACATACACTTCTGGCTAGGAAAAGATACAAGCCAGGATG AAGCTGGAACAGCAGCTATAAAGACTGTAGAGCTTGATGAAATGCTTGGT GGGCGTGCAGTGCAGCACAGGGAACTACAAGGTCACGAGTCGGATAAATT TTTATCGTACTTCAAACCATGTATTATACCACTAGAAGGGGGTGTTGCAT CAGGATTTAAGAAACCTGAAGAGGAAGAGTTTGAGACAAGATTATACGTC TGTAAAGGAAAACGAGCTGTTAGATTGAAGCAGGTCCCCTTTGCTCGGAC TTCGTTGAATCATGATGATGTCTTCATACTGGACACTGAAGATAAAATTT TTCAATTCAATGGCTCAAACTCCAATATTCAGGAAAGGGCCAAAGCATTA GAAGTGATTCAGGTTTTAAAAGAAAAGTATCATGAGGGAACGTGTAATGT CGCTATTGTTGATGACGGAAAGCTAAAAACCGAGTCAGATTCTGGTGAAT TCTGGGTCCTATTTGGTGGCTTTGCTCCACTTGGTAAAAGAGTTACCAGT GAAGACGATGTTGTTCCTGAGAGAAAGGCTCCTGAACTATACAGCATTGT TGGTGGTCAAGTCAATGCTGTAGCTGGTGAACTGTCCAAATCTTCATTAG CAAATAACAAATGTTTTCTGTTAGATTGTGGTGCTGAAGTATTCGTGTGG ATTGGTCGGTTAACAAAATTAGAAGATAGAAAAGCTGCTGTAAAATCCGC TGAGGATTTTATTGCTAGTCAAAATAGACCAAAGTCAACATATGTAGCCC GTCTTATTCAAGGACACGAGACAACTGCATTCAAGGCCAAATTTGATTCA TGGCCTTCAGGCTCGGCACCCTCTGCTCCCGAGGAAGGTAGAGGAAGAGT TGCAGGCGTTGAAACCTTTATTGAATTTTGTTGCAGCATTGTTGGTGGTC AAGTCAATGCTGTAGCTGGTGAACTGTCCAAATCTTCATTAGCAAATAAC AAATGTTTTCTGTTAGATTGTGGTGCTGAAGTATTCGTGTGGATTGGTCG GTTAACAAAATTAGAAGATAGAAAAGCTGCTGTAAAATCCGCTGAGGATT TTATTGCTAGTCAAAATAGACCAAAGTCAACATATGTAGCCCGTCTTATT CAAGGACACGAGACAACTGCATTCAAGGCCAAATTTGATTCATGGCCTTC AGGCTCGGCACCCTCTGCTCCCGAGGAAGGTAGAGGAAGAGTTGCAGCTT TTCTCAAGAAACAGGGTGTTGCCTTAAAAGGATCTTCAAAGAGCGCTTCT GTTAAGAGTGCCCCCGTTAACGAGGAAATCCCACCTTTGCTTGAAGGAGA TGGAAAAACTGAGGTGTGGCACATTGAAGGAAGTGATAAAACTCCAGTGC CAAAAGAAGACATAGGTAAATTTTATGGTGGAGATTGCTACATTGTTCTC TACACTTATAATCATCAGCAACATCAACATGACAAGAAAGAAGATTACTA CTTATGCTACTGGATTGGGAAGGATAGTGTCGAGGAAGACCAAAAGAATG CAGCTCAATTAACTGGCACCATGTCTAGATCACTGAAGGGACGACCTGTG CAGGGTCGTATTTATCAAGGGAAAGAACCACCACAGTTTCTTGCCATCTT TCAGCAGATGGTTGTCCTTAAGGGAGGAATAAGTTCTGGCTACAAAAATT ATATTGCCGAGAAAGGGTTGAAAGATGAAACTTACAGTGGTGACTGTGTT GCACTGATTCAAATATTGGGGACCGCTGTGCATCAGAAAAAAGCTGTGCA AGTTGACGCGGTGGCCACCTCCATGAACACTAATCATTGTTTTATTCTGC AATCTGGCTCGACTATGACCATCTGGAAAGGAAGTAAGAGCACACCAGAG CAACAACAGCTAGCCATCAAAGTTGCAAGCTTCTTGAAGCCTGGTGCAGA TAAGAAAAATTCTAAAGAAGGAACTGAACACTCATCATTCTGGTCTGCTC TTGGAGGACGAAAGAGTTACACCAGCGAAAAAGAGTCTTCGGACTTCACT CGAGATCCCCACTTGTTCACATTCTCAATTGATGAAGGAAAATTAGAGTT CAAGGAAGTCTACAATTTTTCTCAAGATGACTTGTTGACTGAGGATGTAA TGATACTCGATTCACATGCTGAGGTGTTTGTCTGGGTTGGTCAGCGCGCA GATTCCAAAGAAAAGCAAAATTCGCTTGAAAACGGTCAGATATACATTGA TATGGCTGTATCTTTGGATGAGTTGTCCCCACATGTTCCATTTTACAAAG TTACGGAAGGAAATGAACCATGCTTCTTCACGTCATTCTTTTCATGGGAT CCTTCTAAAGCCAATGCTCATGGAAATTCATTTCAAAGGAAAGCTATGCT ACTCTTTGGGACTGGTCCTGATGCAGAGACAAATGACGGGGTACATACTC AACGAGCTGCAGCTTTGGCTGCTTTGAACTCGGCATTTAATTCAACTTCT GAGACTAGTCAGGCTACCGAGACAAGTGAAGGAGGACATAGTGAAGGAGG ACATACTCAAAGAGCTGCTGCTTTGGCTGCTTTGAACTCGGCATTTAGTT CTTCTTCTGAGACTAGTCATGCTACTGAGAACAAATCAAATGAGACAAAT CAAGGAGGACATACTCAAAGAGCTGCGGCTTTGGCGGCACTGAATGCTGC ATTTAGTTCATCTTCTGGGACTAGTCAGGATAAATCAAAAGTGACGAGTG GAGGAGGACATACTCAAAGAGCCGCGGCTTTGGCTGCTTTGAACTCTGCA TTTAGTTCATCATCTGAGCCTAAACGGGCTCCTTCTCCAAAGCCAGCAGG AGCCAGTTCGGGATCACAAAGAGCGGCTGCAGTAGCTGCCTTGTCTTTTG TTTTTAGGGCCAAGAATAAGGTTTCACCTCCAATATCTCCGCGTCAATCC AGTAGAAATACACCCACAGAACCAGTGATCTCTGGAAGTAGTGAGAACTT ACCCGAAGTTGAGGATCCTACAGAAACTCATACTCCTACTGAAACTCAAG TTGAGGAGGCTGAGACTGTTGAGCCTGTGAAAGAGAGTAATGAGGAGTCA GAACCAAAACCAGAGCCCGTGTCAGAGAGTAACGAAGAGACAGAATCAAA ACCAGAGCCTGTCTCAGAGAGTACTGAGGAGTCAGAACCAAAACCAGAAC CCGTCTTAGAGAGTACTGAGGAGTCGGAACCAAAACCAGAAGCAGAGCAA GATGAGGAGAATGGTAGTGAGAGTGAAAATACATATAGTTATGACCGGTT GAAATCTAATTCTGATAATCCAGTCACTGGAATTGATTTAAAACGAAGAG AGGCTTATCTTTCTGACGAGGAATTCGAAACCATATTTGGGATGTCGAAA GAAGCATTCTCTAAGTTTCCTAGGTGGAAACAAGACATGTTAAAGAAAAA ACATGATCTCTTCTAG
Pep:
>DCAR_009062pep MSSSRKALEPAFQGAGQKPLYLTLTRGTEIWRIENFVPVALPKSDYGRFY SGDSYIVLQTSPGRGGAYLFDIHFWLGKDTSQDEAGTAAIKTVELDEMLG GRAVQHRELQGHESDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETRLYV CKGKRAVRLKQVPFARTSLNHDDVFILDTEDKIFQFNGSNSNIQERAKAL EVIQVLKEKYHEGTCNVAIVDDGKLKTESDSGEFWVLFGGFAPLGKRVTS EDDVVPERKAPELYSIVGGQVNAVAGELSKSSLANNKCFLLDCGAEVFVW IGRLTKLEDRKAAVKSAEDFIASQNRPKSTYVARLIQGHETTAFKAKFDS WPSGSAPSAPEEGRGRVAGVETFIEFCCSIVGGQVNAVAGELSKSSLANN KCFLLDCGAEVFVWIGRLTKLEDRKAAVKSAEDFIASQNRPKSTYVARLI QGHETTAFKAKFDSWPSGSAPSAPEEGRGRVAAFLKKQGVALKGSSKSAS VKSAPVNEEIPPLLEGDGKTEVWHIEGSDKTPVPKEDIGKFYGGDCYIVL YTYNHQQHQHDKKEDYYLCYWIGKDSVEEDQKNAAQLTGTMSRSLKGRPV QGRIYQGKEPPQFLAIFQQMVVLKGGISSGYKNYIAEKGLKDETYSGDCV ALIQILGTAVHQKKAVQVDAVATSMNTNHCFILQSGSTMTIWKGSKSTPE QQQLAIKVASFLKPGADKKNSKEGTEHSSFWSALGGRKSYTSEKESSDFT RDPHLFTFSIDEGKLEFKEVYNFSQDDLLTEDVMILDSHAEVFVWVGQRA DSKEKQNSLENGQIYIDMAVSLDELSPHVPFYKVTEGNEPCFFTSFFSWD PSKANAHGNSFQRKAMLLFGTGPDAETNDGVHTQRAAALAALNSAFNSTS ETSQATETSEGGHSEGGHTQRAAALAALNSAFSSSSETSHATENKSNETN QGGHTQRAAALAALNAAFSSSSGTSQDKSKVTSGGGHTQRAAALAALNSA FSSSSEPKRAPSPKPAGASSGSQRAAAVAALSFVFRAKNKVSPPISPRQS SRNTPTEPVISGSSENLPEVEDPTETHTPTETQVEEAETVEPVKESNEES EPKPEPVSESNEETESKPEPVSESTEESEPKPEPVLESTEESEPKPEAEQ DEENGSESENTYSYDRLKSNSDNPVTGIDLKRREAYLSDEEFETIFGMSK EAFSKFPRWKQDMLKKKHDLF*