Resource Type:
mRNA
Name:
XM_017362726.1
Identifier:
XM_017362726.1
Organism:
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
Transcript Id:
XM_017362726.1
Product:
uncharacterized LOC108195777, transcript variant X1
Sequence:
CTGACAAGTACATCGTATTGTTGCAGTCCTCCTGACACGAACAACATATA
CTTACACACATACTTACAAAACAACCACCTCAACCGGACTTGCGAAAATG
AACTGGGATCAGCTCTTTTCCTAGTTTTCTTAAGGATTGAATCCAGCTTT
CTGTCATCATGTTCGAAGCGCACGTTTTGCATCTGCTTCGAAGATATTTG
GGTGAATATGTTCATGGTCTTTCAGCAGAGGCTTTGAGGATTAGTGTATG
GAAAGGCGATGTGGTTCTTAAAGACTTAAAATTGAAAGCCGAGGCCCTTA
ATTCACTGCAACTTCCTCTTACCGTCAAAGCTGGATTTATTGGCACAATA
ACGCTCAAGGTTCCTTGGAAAAGTCTCGGAAAGGAACCTGTAATTGTGCT
CATTGATCGTGTGTTTGTTCTTGCTCGTCCTGCACCTGATGCGAGGTCTG
TAAAGGAGGAGGATCGAGAAAAACTTTTTGAAGCAAAGCTTCAACAGATT
GAGGAAGCTGAATCAGCGACACTTGAAGCGATTTCAAGATCAAAAGTTGG
AAGTCAGTCACCAGCAGGAAATTCATGGCTGGGTTCGTTGATTGCTACAA
TAATTGGGAATCTGAAGATAACCATTAGCAACGTACATGTCAGATACGAG
GACTCTACAAGCAATCCTGGACATTCATTTGCTTGTGGTGTTACTTTGGC
AAAGCTTGCTGCGGTTACGATGGATGAGCAAGGAAATGAAACGTTTGATA
CCAGTGGCGCTCTAGATAAGTTGCGAAAGTCTGTGCAATTGGGAAGGCTT
GCTATGTACCACGATTCCAACCAGCTCCCATGGAGCTTGGATAAGAAATG
GGAAGATCTTACTCCTAGAGATTGGACTGAGATTTTTGAAGATGGTATTA
ATGAATCTGGCGAAGGTGGGGAAACAGTGTCTAAATGGGCGCAGGATCGC
AATTATCTAGTTTCACCTATCAACGGAGACCTCAAGTATCACCGATTAGG
CAATCAAGAGAAGAGTAATCTTGATGAGCCATCAGAGAAGGTTTCTCTGA
TCCTTAGTGATGTGTCCCTAACAATCACCGAGGCTCAGTATCATGATTGG
ATTAGACTCTTTGAGGTTTTCTCAAGATACAAGGCATATCTCGAGGTTTC
TCATATCAGACCAGTGGTGCCAGTTTTAGAAAACCCCAAGGCTTGGTGGC
GTTATGCTGCTCAAGCTAGTCTGCAGCAGAAGAGAATTTGCTACAGATTC
TCTTGGGACCAGGTTCAATCTCTGTGTCATTTGCGTCGACGGTACATTCA
GTTGTATGCTAGTTCTCTGCAGAAGATGTCAAATGTTGATAACAAAGAAA
TTAGAGACATAGAGAAGGATCTTGATCCCAAAGTAATTCTTTTGTGGAGG
TTTCTTGCTCATGCCAAAGCTGAATCTGTAAGATCTAAGGAAGAAGCTGA
GCGGAGGTTGTCAAAAATGAAAAGCTGGTTTTCATTTAATTGGCGTGCGC
CTTCTGAAGACACCCTTGTAGAGGAGACTTCTGATGCACAAATGATAGAG
GAGAGATTAACTAAAGAAGAATGGCAGGCAATTAATAATTTACTAAGCTA
CCAGCCTGATGAGGAATTGAATTTTGGTTCGGGGAAGGATATGCAAAATA
CAACACACTATTTGATTAACGTATCAGTTAGTCGTGCTGCTGCCAAGATT
GTGAATATTAGTCAGATAGAGATTGTTTATGGTAGATTCGAGCAACTTCA
TGTGTCCACGAAATTAAAGCATCGAAGTACTCATTGTGATTTGACACTGA
AATATTATGGCGTGTCTGCACCAGAAGGTTCACTTGCCCAGAGTGGTTAT
GATGAGCAGAATTTGAATGCATTAGCTGCTACCTTTGTGTACTTACCGAT
TGGGGAAAATGTTGATTGGCGGCTTTCAGCAACAATTACCCCTTGCCATG
CCACAGTTTACATGGAAAGTTATGATCGTTTTTTTGAATTTTTGAAAAGA
AGTAAAGCCATTAGCCCGACAATTGCATTGGAAACTGCCGCTGCTCTGCA
GAATAAGATTGAGGAGGTGACTCGTAGGGCTCAGGAGCAGATTCAAATGG
TGCTAGAGGAGCAGAGCAGGTTTGCCCTTGATATCGATCTTCATGCTCCG
AAAGTTAGGATCCCTATCAGAACCGGCGCCTCTTCCACATACGATAGCCA
ATTTCTTCTGGATTTTGGTCATTTTACGTTGCACACTAAGGAGACGAATC
CTGTTGATGAGGGCCAGAGTCTGTATTCTCGTTTTTACATATCTGGAAGG
GATATAGCTGCTAGTTTTACAGATTGCGGCTCTGACAGTCAGAGCAATAT
TCTGTCATCATCAAGTTCTGATAGCCAACTCTCTTTGTTTCCAGATGCTG
TTAACTTCTACTCTATCATTGATAGATGTGGAATGTCTGTAATTGTTGAT
CAGATTAAAGTACCTCATCCAGATTACCCGTCAACTCGTGTTTCCGTACA
AGTACCTATCCTTGGCATTCACTTTTCACCAGTCAGATATTCCCGACTTA
TGAAGCTGTTGAACATAATCAATGGAACAATTCAAAATGCTTCTCAGCCT
GTTGGTGGAGATTTCCAAGCTGACCTGGCACCGTGGAATCCCCCAGATCT
TTCAGCTGAGGCTCAAATTCTTGTCTGGAAGGGAATTGGCTATTCTGTTG
CCTCTTGGCAGCCCTGTTTCCTTGTGCTGTCTGGATTTCATCTGTACGTA
TTGGAGTCTGAAAGATCCCAGAGTTACTCTAGGTGCTCAAGCATGGCTAG
TAAACATGTATTTGAAGTTCCTCCAACCAACGTTGGCGGTTTAGCATCTT
GTATTGGTGTTTGTGCTAGAGGCATCGATAGCCAGAAGGCTCTGGAGTCT
TTCAGTACGCTAATAATAAAATTTCGGGACGAGGAGAAGGCTTCCTGGTT
AAGGGGTCTCATACGTGCAACATATCGAGCTTCTGCAACTCCTTCTGTTG
ACGTACTTGGACAACATGATGACACAGTGTTCCCCGGAAGTCGACCGATT
AACATGAAAACAGCCGACCTTGTTGTTAATGGAACATTAATAGAAACAAA
GCTATCAGTTTATGGAAAGGCTGGAGATGAGGCCCCTGTAAAGTTTAAAG
AGACAATAATTCTGGAGGTTCTTGCCGGAGGAGGAAAGGTACATGTTGTT
CGTTGTGAAGGTGACCTAACTGTGAAGGTGAAGCTGCATTCTTTAAAAAT
AAAAGATGAACTACAAGCTACATCAAATTTATCTCCACAATATTTAGCTT
GCTCTGTCCAGAAGGATGACAATTCCCTTAATTCCCCAAGTAGCATAGAG
CCTCAAGGGAATGAGCTATTGCCAACTGAGGATGACGACATTTTTAAGGA
TGCCTTGCCTGATTTTCTATCTCTCTCTGATTCCGCTGAGGCGATAATAA
GTGAAAAGGATACTACAGTAGGCAGAACTAATTCTGCCGATGTATTTTAC
GAGGCTGAGGATGTTGAAGATTCTCATTTTGTTTCACTTATATTTTTGAC
CAGGAGTACTAGTTCTCCTGATTATGACGGTGTTGATTCACAGATGATTG
TTAGTATGTCAAAACTGGAGTTCTACTTTAACAGACCCACACTTGTTGCT
TTGATTGGTTTTGGCCTTGATCTGAGTGCTGCAAATAGTGAATCAACTGT
AACAGATGAAGATAAGAATGTGAATAAAGAATTATCAGAGAACAAACTGA
AGACAGAAGAAAGTGACAACGCGTCTGTTAAAGGGTTACTGGGATATGGG
AAAGGTCGTGCTGTATTTTATTTGATTATGAATGTTGACAGTGTTACTGT
TTATCTTAATAAGGAGGACGGTTCTCAGTTGGCCATGTTTGTCCAAGAAA
GTTTTGTTTTGGACCTCAAGGTTCACCCCAGTTCCATATCCATTGAAGGC
ACATTAGGAAATTTAAGATTGTGCGATCTTTCGCTGGGCAGTGATCACTA
TTGGGCTTGGCTTTGTGATATACGCAATCAAGGGGCTGAATCACTTATCC
AGTTTAAATTTCATTCTTATAGTGCTGAGGATGATGATTATGAAGGATAT
GATTATAGTTTGCAGTGCCGTCTTTCTGCAGTTCGAATTGTTATACTTTA
TAGGTTCGTCCAAGAGATAAGTGCCTATTTTATGGGACTTGCAACTCCAC
ATACAGAAGAAGTTGTTAAATATGTGGATAAGGTTGGTGGGTTTGAGTGG
TTGATTGAAAAGAATGAGATTGATGGAGGCTCTGCTTTGAAGCTGGACCT
TTCACTGGACACTCCTATAATTATTGTACCAAGGAATTCTATGAGCAAAG
ATTTCATACAACTTGATCTAGGCAACCTGAAGGTCAGGAATGAATTTAGC
TGGCATGGCTACCCTGAGAATGATCCTTCAGCTGTCCATCTTGACATCCT
TGACGCTGAGATAATAGGAATCAATATGGCTGTGGGAATCGATGGTTGCT
TAGGTAAACCCATGATACGAGACGGCCAGGATATTCATATTTATGTGAGG
CGCAGTCTAAGGGATGTCTTTCGGAAGGTTCCAACTCTCGCTTTGGAAGT
AAAGGTGGGTTTATTACATTGTGTAATGTCTGATAAAGAATACACCATCA
TTCTCGATTGTTTCTCAAAGAATATGAATGAAGAACCAAATCTACCTCCA
AGTTTTCGTGACAACATTACTAGCTCAAAAGAGACCATACGGTTGCTGGC
CGATAAGGTCAACGCAAATAGTCAAAGTATTTTGTCACGTACTGTTACCA
TAATGGCCGTGGAAGTAGAATATGCATTGCTTGAATTATGTAACGGCATC
CATGAGGAGTCCCCTTTGGCCCAAATAATTTTAGAAGGACTTTGGGTATC
ATACAGAATGACTTCATTGTCTGAAGCAGATCTTTATGTAACCATACCTA
GATTTTCTATTCTGGATATACGTCCAGATACAAAACCGGAAATGCGGCTG
ATGCTTGGATCGTGTAATGATGTTTCAAAACAGTCTTCAGTGGGAAGTTT
GCCATTCTCCATCGGCTTTAAAAGATTTGACTCCAAAACTTCAGTCAGCT
TGAATATACCCAACTCAACCATGTTCGTGATGGATTATAGATGGCGATTA
TCTTCCCAGTTGTTTGTTATTCGTGTTCAGCAGCCTCGAGTCCTTGTTGT
TCCAGATTTCCTTATTGCTGTTGGTGAGTTTTTAGTTCCGGGTCTGGGAG
CTATAACTGGCAGGGAGGAATTGATGGATCCTAAGAACGATCCCATTGGT
AAAAAAAATGGTATAGTATTGTTGGATCCACTTTACAAACAGAAAGAGGA
TGTAGTACAACTTTCTGCAAATTCACGGCTTATTGCCGATGCATCAGCGG
TTGATGACTATACATATGATGGTTGTGGGAAAATTATACGTTTAGTTGAA
GAAGCTGAAACCAAGGAACTCCCCTCAAATGGTTTTTGGCCTATTATTAT
TATAGGACGGGGGAAGAGTTTGCGTTTTGTAAATGTGAAAATTGAGAATG
GTTTCTTATTGAGGAAGTATACATATTTGAGTAATGAAAGCAGCTACTCT
GTCTCCACTGAAGATGGTGTTGAAATTTCATTTCTTGAAAATAATTTGTC
CGATGATATTAAAAGGAGTACAGACAACATGAAAGAATTGTTGCTTACCT
CTAATACTTCTGACAATATCAAAAGTGACTCGAGCAACATCCAGAGTTTC
AGTTTCGAGGCCCAGGTGGTTTCTCCAGAGTTCACATTCTATGACAGCAG
AAAGTCTTCTTTGGATGATTCCACACATGGAGAAAAGCTTCTGCGAGCAA
AACTTGACTTCAGCTTCATGTTTGCATCGAAGGAAAATGATATTTGGATT
AGAGCCCTTTTTAAAGATCTAACTATGGAGGCTGGTTCTGGTCTTATTAT
TCTAGATCCAGTGGACATTTCTGGAGGATATACATCTGTAAAAGATAAAA
CAAATATATCTGTGATATCTACTGACATATATATCCATCTTTCTTTAAGT
GTTATGTCCCTTGTTCTTAACCTTCAAAGTCAAGCAGCTGGAGCATTTCA
ATATGGAAATTCTGATCTTTTGTCGCCATGTACTCACTTTGATCGACTGT
GGGTGTCGCAAAAAGAAAATGGACGCCTTAATAATCTTACCTTTTGGAGG
CCTCGAGCTCCCTTAAACTATGTTGTATTGGGTGATTGTGTGACATCGAG
GCCAATTCCTCCTTCGTATACAGTAATGGCTGTGAGCAGTACATATGGAC
GTGTAAGAAAACCTCTGAGGTTTGAGCTCATAGGATTATTCTCTGCCATC
CAAGGATATGAAGACTTGGAGGGAAATTCCACTACTAGGGACTGCTCAAT
CTGGAAACCGATCCCACCACAAGGATATACGGCGTTAGGATGTGTTGCAC
ATGTAGGAAGCCAACCACCACCTACTCACATTGTCCACTGTGTCCGTTCT
GATCTTGTAACATCAACTAGGTATTCCGAGTGTATATTCTATACATCAGA
AAATCAGTCCTTCTCGTCTGGATTTAGCATCTGGCTTTTGGACAATGTTG
CTGGATCCTTCTATGCTCATCCTTCAACTAGTTGCCCTCCCATCAAAATT
TGTCTTGACCTAAATCATCTGGTTCTAATTAATTCAAGTCGATCACATTT
TGCTTTCGAGAGTCCCAGCTCCAGTTTGGATTCTAGACGTGAAAATGAAT
ATGGGGAACCAAATTCTCAGAGTGCTAATTTATCTGGATGGGATGTAGTC
AGATCAATTTCAAAAGCTACTAATTATTATATTTCAACTCCCAACTTTGA
GAGGATCTGGTGGGACAAGGGTGGTGATATTCGCCGACCAGTTTCTATCT
GGCGACCTGTGCCACGTCCCGGTTATGCCATTCTTGGTGACTGCATAATT
GAAGGTTTAGAACCACCTGCTCTGGGTATAATTTGCAAGGCTGACAACCC
TGAGATATCTGCAAAGCCGGTTCAATTCACTCAAGTAGCTCATATTGCAA
GGAAAGGTGTGGATGATGCTTTTTTCTGGTACCCTATTGCTCCCCCTGGC
TATGCTTCGCTCGGATGCATCGTCTCACGAACAGATGAAGCACCCGCTCT
GGAATCATTTTGTTGTCCGAGAATGGATCTTGTTAGCCAAGCCAACATCC
TTGAGGGCCCTCTATCACGATCTTCAAGTTCAAGAGGATCTCAGTGCTGG
AGTTTATGGAAAGTGGATAATCAGGCTTACACTTTCCTTGCACGCTCTGA
CTTGAAAAGGCCTGCAACCCGGCTAGCTTTCACTTTTGGTGATTCTGTTA
AACCTAAGACACGAGACAACATAACTGCTGAGATGAAATTGAGATGTTTG
TCTGTGACAATTTTAGACAGCTTATGTGGAACGATGACACCACTCTTTGA
TGTTACAATTTCTAATCTGAAGCTTGCAACTCATGGCCGACTAGAGGCAT
TGAATGCTGTACTGATTTCGTCAGCTGCCGCATCAACATTTAACACGCAT
TTAGAAGCATGGGAGCCACTAGTGGAGCCGTTCGATGGAATATTCAAGTT
TGAAACATATGATGCAGACGCACATCCAACATCAAAATTTGGTAAAAGAG
CGCGTGTTGCCGCAACCAGTACATTGAATATAAATCTCAGTACAGCAAAT
CTCAATATGTTTTTGGAATCCGTGATTTCATGGAGAAGACAACGAGAATT
TGAACAAAAAGCAATTCAACTAAATGAGGAACATCATGGCCATGCAGATG
ATTCAAATTTCTCCGCATTAGATGAGGAAGATCTCCAAACTGTTACAATA
GAAAATAAACTTGGTTGTGATATTTATTTGAAGAAAGCTGAGCAGGATTC
AAATGCAGTAGGACTACTGCATCATAATGACCATTCTTCTTTGTGGATTC
CACCTCCAAGGTACACTGACAGGTTAAATGTTGCAGAAACAAGGGAATCA
CACCGTTATGTCGCTGTGCAAATAATTAAAGCGAAGGCTTTACCTATTGT
TGATGATGGAAACAGTCACAAATTTTTCTGTGCATTGCGCCTAGTTGTTG
ATAGTCAAGAGACATATCAGCAAAAACTATTTCCTCAGAGTGCAAGGACA
AGATGTGTTAGGCCCCTAGTCTCGGTAAGCAATGGTGTAGATGAGGGCAC
TGCCTGCTGGAATGAACTCTTTATATTTGAAGTTCCTAGGAAGGGTGGCG
CTAAGTTAGAAGTGGAGGTGACAAACCTAGCTGCAAAAGCAGGAAAAGGT
GAAGTTGTGGGTGCATCCTCGTTTTCTGTTGGACATGGTGCAAACCCTCT
AAAGAAGGTGGCTTCAGTTAAAATGTTGCATCAAGCATCCGAAGTCCAAA
ATATTGCAGCTTATCCGCTGAGAAGAACTGTTTTATCTGGCAGTGATGAT
AACCATTCTCAGAGTAGCCTTGTGGTTTCGACCTCTTATTTTGAAAGAAA
ATTAGTTGCTAATGTTCTTAGTGAGGTGGAAGAAGGAAACGATGTTGATA
GAGATATTGGTTTCTGGGTAGGCCTTTCCCCTAAAGGTTCATGGGAGAGT
TTCCGATCGTTCCTTCCATTATCTGTAATTACTAAAACTTTGAACGGTGA
TTATATTGCTGTTGATGTGATTATGAAAAATGGCAAGAAACATGCAGTTT
TAAGGGGTCTGGTAACAGTTATTAATGATTCTGATGTGAAATTGGAAGTG
ACCACTTGTCATGCATCAGTGATTCATACTAGCAATCTGTCAGCAGAAAA
TGTTGTGGATGCTCTGAATCCTGGTTCTTCTTGTATCTTGCCCTGGAAAA
GTGCTTTAAGAGGTTCTGATTCCTGTTTACTTGTTCGTCCATGCACTGAT
GATGCTCACCCGCCCTATTCGTGGGGACATCTTGTTAATATTGGGCATTC
CGGGGGGAAAGAACAGTCCATTGATCAAGGTTCTTTTTCCCGACAAAATA
CCTTGAAGCATAGGAATCATATGCCTACTTCATTCAAGCTCAGCCAACTT
GAGAAGACTGATGTTTTCTTCTGTTCGAGTAGCCCTGATAGAGATCAGTT
TTGGCTTAGTGTCTGCACAGATGCATCAGCGCTTCATACAGAGCTTAATG
CCCCCGTATATGATTGGAGAATCTCTATCAACTCTCCTTTGAAGTTGGAA
AACCGACTTCCTTGTCCAGCAAGATTCATTGTCTGGGAAAAATTAAAAAA
CGGGAACAATATTGAACGACAACGAGGCTTTATGTCATCTCGTGAAACTG
TAAACATACATTCGGCTGATGTTCAAAATCTGATATATGTTACATTGTTT
ATACAGGGAGGGTGGTGTTTGGAAAAGGACCCTGTTCTTATATTGGACCT
CTCATCTAATAATCATGTCTCATCATTTTGGATGGTTCGCCAGCAAAGCA
GGAGACTGCGTGTGAGCATAGAGCGTGACACTGGAGGAACTATAGCTGCT
CCAAAAACTGTAAGATTTTTTGTCCCATACTGGATTAGTAATGAGTCTTC
TCTGCCTTTAGCATATCAAGTGGTGGAAATAGAACCTTTGGAGGCTTCAG
ATGCGAATTCCCTTCAGAGATCGAAAACAGGTAGATTTGGAACAACCTCA
ATGAGAATTCCTAGTATCTCTGCGGACAGGAATTATTTTGGCTCGAGGAA
AAACCTGCAAGTTCTAGAAGTGATTGAAGACACTAGTCCAACAGCTAGTA
TGCTCTCTCCACAAGATTATGTGGGCCGTGGTGGTGTTATGCTGTTTTCA
TCTCGTAATGATGGTTATTTATCTCCTCGAGTGGGAATCGCTGTTTCCAT
ACGAGATTCTGAAAATTATAGTCCTGGAATATCTCTTCTTGATCTGGAGA
AAAAGCAAAGAGTTGATGTCAAGGCTTTTAACTCAGATGGATCGTACTAC
AATCTTTCAGCTGTGTTACAAATGTCGTCAGATAGAACAAAGGTTATTCA
TTTTCAGCAACAAACCTTGTTCGTTAATAGGGTTGGGTGCAGTCTCTGTC
TTCAGCAGTGTGATACTCAGTCATTGGAATGGATACATCCGACTGATCCT
CCACTACAGTTGCGATGGCAGTCCCTTGGAAGAGCTGAGATGTTGAGATT
GCGAATGGATGGACATAGCTGGAGTACGCCTTTTAGTGTTGGAACTGAAG
GTGTTATCTGTATTTCTTTGACCAGAAATCCTGCAAGTGCTCCAACGCAA
TTAAGAGTAGAAGTTAGAAGTGGTACAATGAGCTCACGCTGTGAAGTTAT
TTTTCGTCCCAATTCATTTTCAAGTCCTTACAGGATTGAGAATCATTCTT
TATTTTTGCCGATTCGTTTCCAGCAAGTGGATGGTGCCAGCAATTCATGG
CAGTCCCTACTTCCCAATGCATCTGCTTCTTTTTCGTGGGAAGATCTAGG
CAGACCTCGACAATTGGAACTCTTGGTAGATGGTGATGACCGTTCAAAAT
CACTAAAGTACAGTATTGATGAGGTAGCTGATCATCAGCCTGTATTTGTG
AATGATGAACCTACAAGAGTTCTACGTATTAACATTCTGAGAGAGGATAA
AGTTAATGTTATAAAGATCAGTGACTGGAAGCCGGAGAATGAACTTCAAC
CAGATATAAGTAGAAGCAGCTCTTTTTCTTCAATCCCAGTTTCTGAAAAT
GATGTTACACTTCAACAATCAACTTCAAATAGTGAATTTCATGTTATTTT
CGAGATTTCTGAGCTCGGGCTATCCATTATTGATCATACACCTGAGGAGA
TATTATATCTTTCCCTGCAGAGTCTTCTGTTGTCATATTCAACTGGCTTA
GGTTCTGGGATCACAAGGTTGAAATTAAGAATGCGGGGAATTCAGGTGGA
TAATCAGTTGCCTTTAACTCCAACGCCTGTTCTGTTTAGACCACAGAGAG
TCGGGGATGAGACTGATTACATCCTCAAATTTTCGATTACGCAGCAATCC
AATGGATCACTTGATTTATGTGTGTATCCATATATTGGCTTTCAAGGACC
CGAGAATTCTGCATTTTTGATTAACGTCCATGAACCAATAATTTGGCGCA
TTCATGGGATGATTCAGCAGATCAACTTAAGCAGATTGTCGGAAACTGAA
AGCACTGCGGTTTCAGTTGATCCCATCTTTCAAATCGGTGTTTTCAATGT
CTCCGAAGTTCGCTTCAAAGTCTCCATGGCTATGTCACCAACTCAGCGAC
CAGTTGGTGTTCTTGGGTTTTGGGCATCCTTGATGACTGCACTTGGAAAC
ACTGAGAATATGCCAATTCGATTAAATCAAAGGTTCCAGGAGAATATACG
CACAAGGCAAAGCGTACTCATGAGTAACGCTATTGCGAATATCAAGAAAG
ATATTCTTGGTCAGCCTCTTCAACTGCTCTCAGGTGTTGACATACTGGGC
AATGCCAGTAGTGCACTTGGGCATATGAGCAAAGGTGTTGCAGCTCTATC
AATGGATAAGAAATTTATTCAAAGTCGGCAGAGACAAGATAGCAAAGGTG
TGGAGGACTTTGGCGATGTTATAAGAGATGGGGGTGGAGCTCTAGCAAAG
GGATTTTTCCGAGGATTTACCGGAATTGTTACTAAACCTCTTGAAGGAGC
CAAAGCATCTGGAGTAGAGGGCTTTGTTCAAGGTGTTGGAAAAGGTATAA
TAGGTGCCGCTGCGCAACCTGTCAGTGGAGTTCTGGATCTTTTGTCAAAA
ACCACTGAAGGTGCAAATGCTATGAGAATCAAAATTGCGTCTGCTATTGC
GTCAGAAGATCAACTCCTTCGCAGGAGGCTTCCCCGAGTAATTGGTGGCG
ATAATTTGCTAAGACCATATGATTTGTACAAAGCTCAGGGACAGGTGATA
CTGCAACTAGCAGAATCTGTATCGTTCTTCCGGCAAGTTGACTTGTTCAA
AGTGCGTGGGAAGTTTGCCTTGTCGGATGCATATGAAGATCATTTTTTGC
TCCCTAAAGCAAAATATCTTCTTGTCACTCATAGAAGGATTATACTTTTG
CAACAAGCATCCAGCATTATCGGGCATAAGAAGTTTAACCCAGTCAGAGA
TCCATGCTCTGTTTTGTGGGATGTATTGTGGGATGACCTGATGACAATGG
AATTAACTCATGGAAAGAAAGATCGGCCAGATTCAATACCTTCACGGATT
ATTCTTTACTTACAAGCTCGATCTGTAGATACTAAGGATCAAGTTCGCAT
TATAAAGTGCAACCGTGATTCTAATCAAGCCTTTGAAGTTTATACTTCGA
TTGAGGAAGCTATGAATACTTATGGGCCAAACCAGGCAAAGGACTTGCTG
AGAAGGACTGCTGCCAAACCATACTCAGCCATTGTTGATTCTGCTAAGGC
CGAAGCTATCCCCAGAGATAACTTTTACTTCTCATCTCCCCAGCAGATGC
CTTCACCTATTTCTCACAGCTCAACTTTTGGCACTAATGCAAATTAGTTG
TGAAAGAAATATTATGGCGTGATCTTAGATAAAGTTTGAGTTGTATTTGT
CAAGATGGCTATCAGTACAAATGATTGAGAAATTTTGCATGACAAGTGAG
CAGTCGCTAAGCTGCTGACCCTTTGGAGACAAACTACATTCCATGTGTTT
CTGGAGAGCAGTTTTGAGCACTAACCCGAAAGACAAGGGAAAGGGTGCGA
CAGAGCACCGCGATCAAGTCCGATGACATCGAGTAGTTGTACATACCTGC
ATACATATATAGAATTGTATATATATATTTTAATTAATAGAACTTCAGCA
GTAGTTCAGGGAAAATGTATATATGACATGTAGCATATATTTTCACTGGC
AGGTCCTTTTCCAAGTTTTAAAAGAGGCCAGTATAAGTAGCTAATATATT
ATAGATGTAGAAGCAGCTGGACTACTTTGAGGTGAAGAGGGCTCCTGCAT
ATTGTTGGGACTCAATAGTCCTCGTAGACCAACACATTTTATACAGCTCA
ATATATTCATGATGATGTATTACACTATTATTAAGATGAAAAATAAATAA
GCTTTGGTGATTTATGGGGTATCTCGGTTTTGGACC
Sequence Length:
13086
Sequence Checksum:
14a04b562d3441afe1e3f430eab95cc9
View location in JBrowse:
Protein Sequence:
MFEAHVLHLLRRYLGEYVHGLSAEALRISVWKGDVVLKDLKLKAEALNSL
QLPLTVKAGFIGTITLKVPWKSLGKEPVIVLIDRVFVLARPAPDARSVKE
EDREKLFEAKLQQIEEAESATLEAISRSKVGSQSPAGNSWLGSLIATIIG
NLKITISNVHVRYEDSTSNPGHSFACGVTLAKLAAVTMDEQGNETFDTSG
ALDKLRKSVQLGRLAMYHDSNQLPWSLDKKWEDLTPRDWTEIFEDGINES
GEGGETVSKWAQDRNYLVSPINGDLKYHRLGNQEKSNLDEPSEKVSLILS
DVSLTITEAQYHDWIRLFEVFSRYKAYLEVSHIRPVVPVLENPKAWWRYA
AQASLQQKRICYRFSWDQVQSLCHLRRRYIQLYASSLQKMSNVDNKEIRD
IEKDLDPKVILLWRFLAHAKAESVRSKEEAERRLSKMKSWFSFNWRAPSE
DTLVEETSDAQMIEERLTKEEWQAINNLLSYQPDEELNFGSGKDMQNTTH
YLINVSVSRAAAKIVNISQIEIVYGRFEQLHVSTKLKHRSTHCDLTLKYY
GVSAPEGSLAQSGYDEQNLNALAATFVYLPIGENVDWRLSATITPCHATV
YMESYDRFFEFLKRSKAISPTIALETAAALQNKIEEVTRRAQEQIQMVLE
EQSRFALDIDLHAPKVRIPIRTGASSTYDSQFLLDFGHFTLHTKETNPVD
EGQSLYSRFYISGRDIAASFTDCGSDSQSNILSSSSSDSQLSLFPDAVNF
YSIIDRCGMSVIVDQIKVPHPDYPSTRVSVQVPILGIHFSPVRYSRLMKL
LNIINGTIQNASQPVGGDFQADLAPWNPPDLSAEAQILVWKGIGYSVASW
QPCFLVLSGFHLYVLESERSQSYSRCSSMASKHVFEVPPTNVGGLASCIG
VCARGIDSQKALESFSTLIIKFRDEEKASWLRGLIRATYRASATPSVDVL
GQHDDTVFPGSRPINMKTADLVVNGTLIETKLSVYGKAGDEAPVKFKETI
ILEVLAGGGKVHVVRCEGDLTVKVKLHSLKIKDELQATSNLSPQYLACSV
QKDDNSLNSPSSIEPQGNELLPTEDDDIFKDALPDFLSLSDSAEAIISEK
DTTVGRTNSADVFYEAEDVEDSHFVSLIFLTRSTSSPDYDGVDSQMIVSM
SKLEFYFNRPTLVALIGFGLDLSAANSESTVTDEDKNVNKELSENKLKTE
ESDNASVKGLLGYGKGRAVFYLIMNVDSVTVYLNKEDGSQLAMFVQESFV
LDLKVHPSSISIEGTLGNLRLCDLSLGSDHYWAWLCDIRNQGAESLIQFK
FHSYSAEDDDYEGYDYSLQCRLSAVRIVILYRFVQEISAYFMGLATPHTE
EVVKYVDKVGGFEWLIEKNEIDGGSALKLDLSLDTPIIIVPRNSMSKDFI
QLDLGNLKVRNEFSWHGYPENDPSAVHLDILDAEIIGINMAVGIDGCLGK
PMIRDGQDIHIYVRRSLRDVFRKVPTLALEVKVGLLHCVMSDKEYTIILD
CFSKNMNEEPNLPPSFRDNITSSKETIRLLADKVNANSQSILSRTVTIMA
VEVEYALLELCNGIHEESPLAQIILEGLWVSYRMTSLSEADLYVTIPRFS
ILDIRPDTKPEMRLMLGSCNDVSKQSSVGSLPFSIGFKRFDSKTSVSLNI
PNSTMFVMDYRWRLSSQLFVIRVQQPRVLVVPDFLIAVGEFLVPGLGAIT
GREELMDPKNDPIGKKNGIVLLDPLYKQKEDVVQLSANSRLIADASAVDD
YTYDGCGKIIRLVEEAETKELPSNGFWPIIIIGRGKSLRFVNVKIENGFL
LRKYTYLSNESSYSVSTEDGVEISFLENNLSDDIKRSTDNMKELLLTSNT
SDNIKSDSSNIQSFSFEAQVVSPEFTFYDSRKSSLDDSTHGEKLLRAKLD
FSFMFASKENDIWIRALFKDLTMEAGSGLIILDPVDISGGYTSVKDKTNI
SVISTDIYIHLSLSVMSLVLNLQSQAAGAFQYGNSDLLSPCTHFDRLWVS
QKENGRLNNLTFWRPRAPLNYVVLGDCVTSRPIPPSYTVMAVSSTYGRVR
KPLRFELIGLFSAIQGYEDLEGNSTTRDCSIWKPIPPQGYTALGCVAHVG
SQPPPTHIVHCVRSDLVTSTRYSECIFYTSENQSFSSGFSIWLLDNVAGS
FYAHPSTSCPPIKICLDLNHLVLINSSRSHFAFESPSSSLDSRRENEYGE
PNSQSANLSGWDVVRSISKATNYYISTPNFERIWWDKGGDIRRPVSIWRP
VPRPGYAILGDCIIEGLEPPALGIICKADNPEISAKPVQFTQVAHIARKG
VDDAFFWYPIAPPGYASLGCIVSRTDEAPALESFCCPRMDLVSQANILEG
PLSRSSSSRGSQCWSLWKVDNQAYTFLARSDLKRPATRLAFTFGDSVKPK
TRDNITAEMKLRCLSVTILDSLCGTMTPLFDVTISNLKLATHGRLEALNA
VLISSAAASTFNTHLEAWEPLVEPFDGIFKFETYDADAHPTSKFGKRARV
AATSTLNINLSTANLNMFLESVISWRRQREFEQKAIQLNEEHHGHADDSN
FSALDEEDLQTVTIENKLGCDIYLKKAEQDSNAVGLLHHNDHSSLWIPPP
RYTDRLNVAETRESHRYVAVQIIKAKALPIVDDGNSHKFFCALRLVVDSQ
ETYQQKLFPQSARTRCVRPLVSVSNGVDEGTACWNELFIFEVPRKGGAKL
EVEVTNLAAKAGKGEVVGASSFSVGHGANPLKKVASVKMLHQASEVQNIA
AYPLRRTVLSGSDDNHSQSSLVVSTSYFERKLVANVLSEVEEGNDVDRDI
GFWVGLSPKGSWESFRSFLPLSVITKTLNGDYIAVDVIMKNGKKHAVLRG
LVTVINDSDVKLEVTTCHASVIHTSNLSAENVVDALNPGSSCILPWKSAL
RGSDSCLLVRPCTDDAHPPYSWGHLVNIGHSGGKEQSIDQGSFSRQNTLK
HRNHMPTSFKLSQLEKTDVFFCSSSPDRDQFWLSVCTDASALHTELNAPV
YDWRISINSPLKLENRLPCPARFIVWEKLKNGNNIERQRGFMSSRETVNI
HSADVQNLIYVTLFIQGGWCLEKDPVLILDLSSNNHVSSFWMVRQQSRRL
RVSIERDTGGTIAAPKTVRFFVPYWISNESSLPLAYQVVEIEPLEASDAN
SLQRSKTGRFGTTSMRIPSISADRNYFGSRKNLQVLEVIEDTSPTASMLS
PQDYVGRGGVMLFSSRNDGYLSPRVGIAVSIRDSENYSPGISLLDLEKKQ
RVDVKAFNSDGSYYNLSAVLQMSSDRTKVIHFQQQTLFVNRVGCSLCLQQ
CDTQSLEWIHPTDPPLQLRWQSLGRAEMLRLRMDGHSWSTPFSVGTEGVI
CISLTRNPASAPTQLRVEVRSGTMSSRCEVIFRPNSFSSPYRIENHSLFL
PIRFQQVDGASNSWQSLLPNASASFSWEDLGRPRQLELLVDGDDRSKSLK
YSIDEVADHQPVFVNDEPTRVLRINILREDKVNVIKISDWKPENELQPDI
SRSSSFSSIPVSENDVTLQQSTSNSEFHVIFEISELGLSIIDHTPEEILY
LSLQSLLLSYSTGLGSGITRLKLRMRGIQVDNQLPLTPTPVLFRPQRVGD
ETDYILKFSITQQSNGSLDLCVYPYIGFQGPENSAFLINVHEPIIWRIHG
MIQQINLSRLSETESTAVSVDPIFQIGVFNVSEVRFKVSMAMSPTQRPVG
VLGFWASLMTALGNTENMPIRLNQRFQENIRTRQSVLMSNAIANIKKDIL
GQPLQLLSGVDILGNASSALGHMSKGVAALSMDKKFIQSRQRQDSKGVED
FGDVIRDGGGALAKGFFRGFTGIVTKPLEGAKASGVEGFVQGVGKGIIGA
AAQPVSGVLDLLSKTTEGANAMRIKIASAIASEDQLLRRRLPRVIGGDNL
LRPYDLYKAQGQVILQLAESVSFFRQVDLFKVRGKFALSDAYEDHFLLPK
AKYLLVTHRRIILLQQASSIIGHKKFNPVRDPCSVLWDVLWDDLMTMELT
HGKKDRPDSIPSRIILYLQARSVDTKDQVRIIKCNRDSNQAFEVYTSIEE
AMNTYGPNQAKDLLRRTAAKPYSAIVDSAKAEAIPRDNFYFSSPQQMPSP
ISHSSTFGTNAN
Relationship:
| Relationships |
|---|
| The mRNA, XM_017362726.1, is a part of gene, LOC108195777. |
| The polypeptide, XM_017362726.1, derives from mRNA, XM_017362726.1. |
Cross Reference:
| NCBI Gene | |
|---|---|
| NCBI Nuccore | |
Gene:
LOC108195777
Model Evidence:
Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Gbkey:
mRNA