MSICSNKVVQDRRSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYE
AQGLRDAYIISLNANYFIDATKKGSVASQPNCETRKWTVFGETRVGIFAK
QDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVW
EDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVD
GFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQ
DISQPRLSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQ
AQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWI
EATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDHLVKQLIM*
| Relationships |
|---|
| The polypeptide, DCAR_001155, derives from mRNA, DCAR_001155. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B6YSA9 ((Putative histone-lysine N-methyltransferase ASHH1-like isoform X2 {ECO:0000313|EMBL:MPA34744.1}) (2.1.1.43 {ECO:0000313|EMBL:MPA34744.1}))
HSP 1 Score: 458.759 bits (1179), Expect = 8.638e-157
Identity = 232/395 (58.73%), Postives = 283/395 (71.65%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQ-----PRLSYNS-------GSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDH 389
R W + G F+IEYCGE+ISSEEA++RSQ YE QGL+DAYIISLNAN FIDATKKGS A QPNCETRKWTV GE RVGIFAKQDI+VGTELAYDYNFEWYGGAN+RCLCGA NCS FLGAKS GF EHNHVWEDGDDRYTV+ PLYDSAEDEP +K ++S + + GN D + +D ++ H +E + +I E S VEG + ++ VK+EV +E L+ + QQ R+ NS GSGS PK RSQH+P +SK RKQV+ K+VA+LFASK+A+EEVI+ EE++ EAT KL+ LY+EIRP+IEEH +DSQD+VPT+VAEKWIEA+C+KWKAE DL+FSI+KN +C P T GD+
Sbjct: 93 RGWGLLADENIKAGQFIIEYCGEVISSEEAQRRSQTYEDQGLKDAYIISLNANNFIDATKKGSFARFINHSCQPNCETRKWTVLGEIRVGIFAKQDISVGTELAYDYNFEWYGGANIRCLCGADNCSKFLGAKSPGFLEHNHVWEDGDDRYTVEEIPLYDSAEDEPSSKLPKTSSSFRSEFITSGNSDYSVLLDASVQSVHQLESSGLIVETLYSVPVEG-VSMSTVKTEVSEEMKLYSQDAQQAFPHKNAMISRIQSNSACRNYHIGSGSVPKKRSQHIPNRKSKHLGRKQVDAKHVAQLFASKEAREEVIKYEEIKNEATSKLDSLYNEIRPAIEEHERDSQDSVPTSVAEKWIEASCSKWKAEFDLYFSIVKNALC-TPQRESGETKPSGDN 485
Match: A0A5J5BWW5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546590.1}))
HSP 1 Score: 450.284 bits (1157), Expect = 6.435e-154
Identity = 231/395 (58.48%), Postives = 287/395 (72.66%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQ-----DISQPRLSYNS-------GSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDH 389
R W + G F+IEYCGE+ISSEEA++RSQ YE+QGL+DAYIISLNANYFIDATKKGS A QPNCETRKWTV GE RVGIFAKQDI+VGTELAYDYNFEWYGGANVRCLCGA NCS FLGAKS GF EHNHVWEDGDDRYTV+ PLYDSAEDEP K S+S + + A GN D + +D ++ +E T ++ EP S VEG + + VK++ +ET+++ + QQ D R+ NS GSGS PK RSQH+P ++K RKQV+GK+VA+LFASK+AQEEV++ EE++ +AT KL+ +Y+EIRP+IEEH +DSQD+VPT+VAEKWIEA C+K KAE DL+FSI+KN +C + +T + GD+
Sbjct: 93 RGWGLLADENIKAGQFIIEYCGEVISSEEAQRRSQTYESQGLKDAYIISLNANYFIDATKKGSCARFINHSCQPNCETRKWTVLGEIRVGIFAKQDISVGTELAYDYNFEWYGGANVRCLCGADNCSKFLGAKSSGFLEHNHVWEDGDDRYTVEKIPLYDSAEDEPSLKLPKSSSSFKSEFIASGNGDYSVIMDASVQSEPQLESTALVIEPLYSVPVEG-VSTSTVKTDASEETNVYSQDAQQAFPHKDAMISRIQSNSACRNFHIGSGSVPKKRSQHIPNRKAKHPGRKQVDGKHVAQLFASKEAQEEVMKYEEIKNQATTKLDSIYNEIRPAIEEHERDSQDSVPTSVAEKWIEANCSKMKAEFDLYFSIVKNALCTPQRQSGETKPSGGDN 486
Match: A0A1S3X7D8 ((histone-lysine N-methyltransferase ASHH1-like {ECO:0000313|RefSeq:XP_016435930.1}))
HSP 1 Score: 437.573 bits (1124), Expect = 7.114e-150
Identity = 221/384 (57.55%), Postives = 268/384 (69.79%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPR-----------LSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHAN 379
R W + G F+IEY GE+ISSEEAK+RSQAYEA GL+DAYIISLNANYFIDAT+KGS A PNCETRKWTV GETRVGIFAKQDI+VGTELAY+YNFEWYGGA VRCLCGA NCSIFLGAKS GFQE+NHVWEDGD RY+V+ PLYDSAEDEPF S + +T C +EL + EP SA G + + A +EV ++ L+P QQ Q +YN GSGSTPK +SQH+PK + K ++RKQVN + A++FASK+AQEEV + E ++ EA KLN +YDEIRP+IEEH +D+QD+VPT+VAEKWIEA+C+K+KA+ D +FS+IKNV+CPRP N
Sbjct: 42 RGWGLLADENIKAGQFIIEYSGEVISSEEAKKRSQAYEAHGLKDAYIISLNANYFIDATRKGSFARFINHSCHPNCETRKWTVLGETRVGIFAKQDISVGTELAYNYNFEWYGGATVRCLCGAANCSIFLGAKSQGFQEYNHVWEDGDVRYSVEEVPLYDSAEDEPFPVISGSGTSGGNEHTTCK-----------------LELNAV--EPHYSAP-PGSIEVKATTTEVNEQGQLYPIDIQQQFQQANPISRIRSNSTSRNYNIGSGSTPKKKSQHIPKRKVKSSNRKQVNDADFAEMFASKEAQEEVTKYEGIKNEAASKLNSIYDEIRPAIEEHGRDNQDSVPTSVAEKWIEASCSKYKADFDFYFSVIKNVMCPRPATN 405
Match: A0A7J7HR08 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955283.1}))
HSP 1 Score: 431.795 bits (1109), Expect = 1.078e-146
Identity = 217/376 (57.71%), Postives = 261/376 (69.41%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVASQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI--SQPRLS----------YNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRP 376
R W + G F+IEYCGE+ISS+EAKQRSQAYEAQGL+DAYIISLNAN +IDATKKGS+AS PNCETRKWTV GE RVGIFAKQDI V TELAYDYNFEWYGGANVRCLCGAPNCS FLGAKS F EHNHVWE+GD+RY V+ PLYDSAEDEP K + S + A G D +G + +E + ++ EPF S EG + +N VK+EV ++ LF + T P +S Y GSGS K ++ H+ +SK KQV+GK VA+LF SK AQEE+I+CEE++ +AT KL+ LY EIRP+IEEH +DSQDNV AVA +WI+ +C + KAE D HFSI+KNVVC P
Sbjct: 100 RGWGLLADENIKAGQFIIEYCGEVISSKEAKQRSQAYEAQGLKDAYIISLNANNYIDATKKGSLASHPNCETRKWTVLGEIRVGIFAKQDITVETELAYDYNFEWYGGANVRCLCGAPNCSKFLGAKSPAFLEHNHVWEEGDERYEVEKIPLYDSAEDEPSLKLPTNKSSFGPEFIASGKNDFSAVTEGSVGSEPHLESSAVVVEPFYSVPTEG-VVMNRVKTEVSEQKKLFSQDTLHVFPPKNPMISRIRSNSTCRNYQVGSGSASKKKAPHIGNKKSKHGGGKQVDGKRVAQLFLSKVAQEEIIKCEEIKNQATAKLDSLYSEIRPAIEEHERDSQDNVDIAVANQWIDVSCARLKAEFDFHFSIVKNVVCLPP 474
Match: A0A118K2L2 ((AWS-like protein {ECO:0000313|EMBL:KVI04548.1}))
HSP 1 Score: 428.328 bits (1100), Expect = 2.757e-144
Identity = 223/393 (56.74%), Postives = 267/393 (67.94%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEP---FTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQPRL-------SYNSGSGSTPKSR-SQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGD 388
R W + G F+IEYCGE+ISS+EAK+RSQ YEAQGLRDAYIISLNA+YFIDATKKGS+A QPNCETRKWTV GETRVGIFA QDI++GTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K DSA + T T + G + + S G AV K E D E Q + L +N+GSG+ R ++ P + K +SRKQ+NGK VA+LFASK+ Q+E+I+CEE+R+EAT KL+ +YDEIRP+IEE +DS D++PT+VAEKWIEA+C+K +A+LDL+F+++KNVVCP P E S GD
Sbjct: 182 RGWGLLADQNIKAGQFIIEYCGEVISSDEAKERSQTYEAQGLRDAYIISLNASYFIDATKKGSLARFINHSCQPNCETRKWTVLGETRVGIFATQDISIGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDEFPLYDSAEDEPSDKLNKVTDSA-IQETSITV------KTEYAGLNNDSFGYKYKTCFSGMVGGGAV----------GNFKCEADGEKEGGQHPVVASGLRSNNAFGDFNNGSGTGSTKRPAKRSPNRKQKLSSRKQINGKRVAQLFASKKVQDELIKCEEVRSEATAKLDSVYDEIRPAIEERERDSLDSLPTSVAEKWIEASCSKLRADLDLYFTVVKNVVCPPPITTEPNPSGPGD 557
Match: A0A5N6PRC0 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6795737.1}))
HSP 1 Score: 415.231 bits (1066), Expect = 6.903e-141
Identity = 212/373 (56.84%), Postives = 263/373 (70.51%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSV------ASQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI--SQPRLS--YNSGSGS-TPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCP 374
R W + G+F+IEYCGEIISS+EAK+RSQ YEAQGLRDAYIISLNANY+IDAT+KGS+ + QPNCETRKWTV GETRVGIFA +DI+VGTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K + S + + + +GF + E + + G + + KSEVK E Q I S P+ + +N+G G+ + K ++ +P + K + RKQVNGK VA+LFASK+ Q+E+I+CEE R+ AT KL +YDEIRP I + +DS D++PT+VAEKWIEA+C+K KA+ DL+F+++KNVVCP
Sbjct: 87 RGWGLLADENIKAGNFIIEYCGEIISSDEAKRRSQTYEAQGLRDAYIISLNANYYIDATRKGSLGRFINHSCQPNCETRKWTVLGETRVGIFATEDISVGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDEFPLYDSAEDEPLDKVKATGSTNQETLITVKTEISGLNNNGFGY--KYKEFSGSV----------GAGTVGSAKSEVK-------EGGQNAIIVSGPKTNDDFNNGLGTGSAKRATKRIPNRKQKLSGRKQVNGKRVAQLFASKKVQDELIKCEEERSLATSKLESVYDEIRPVIAQRERDSLDSLPTSVAEKWIEASCSKLKADFDLYFAVVKNVVCP 440
Match: A0A022RAF5 ((Uncharacterized protein {ECO:0000313|EMBL:EYU36723.1}))
HSP 1 Score: 414.461 bits (1064), Expect = 5.880e-140
Identity = 219/396 (55.30%), Postives = 266/396 (67.17%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDISQ-----PRLSYNS-----GSGSTP---KSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRP-HANEQTTSAEGD 388
R W + G F+IEYCGE+ISSE+A+QRSQ YE QGL+DAYII L+ANYFIDATKKGSVA QPNCETRKWTV GETRVGIFAK DIAVGTELAYDYNFEWYGGA VRCLCG+ NCS+FLGAKSHGFQE+NHVWEDGD RYTV+ PLYDSAED+ F + S + N M+ + +E +E +++ S L V +E KE + PE ++Q Q PR+ N+ G+G +P K R QH + K ++K V+ K VA+LFASK+ QEE+ + EE++ + T +LN LYDEIRP+IEEH +DSQDNV TAVAEKWIEATC+KWKAE D HFSIIKNV+CP P A ++ GD
Sbjct: 82 RGWGLLADQNMKAGRFIIEYCGEVISSEKARQRSQTYETQGLKDAYIICLDANYFIDATKKGSVARFINHSCQPNCETRKWTVLGETRVGIFAKNDIAVGTELAYDYNFEWYGGATVRCLCGSTNCSLFLGAKSHGFQEYNHVWEDGDARYTVENVPLYDSAEDDSFPA--PACSTIPVKHEPVSNYSALMENNSGSEIK--LETASVMESSNYSVVSLQDLAGKPVATERNKEAEHGPENSRQVFPQTNPMIPRIRSNTACRNYGTGPSPSSSKKRPQHTTNQKKKPPAKKYVSSKPVAELFASKRVQEEIKKYEEVKNQVTSELNSLYDEIRPAIEEHERDSQDNVSTAVAEKWIEATCSKWKAEFDFHFSIIKNVMCPTPGTAGDEAKPPSGD 473
Match: A0A251U5V6 ((Putative SET domain group 26 {ECO:0000313|EMBL:OTG18715.1}))
HSP 1 Score: 412.535 bits (1059), Expect = 1.177e-139
Identity = 219/379 (57.78%), Postives = 265/379 (69.92%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSV------ASQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTK-HFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDLFPEKTQQDI----SQPRLSYNSGSGS-TPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHAN 379
R W + G F+IEYCGE+ISS+EAK R+Q YE QGLRDAYIISLNANY+IDAT+KGS+ + QPNCETRKWTV GETRVGIFA QDIAVGTELAYDYNFEWYGG NVRCLCGAPNCSIFLGAKS GFQEHNHVWEDGDDRYTVD FPLYDSAEDEP K ++L T+ T +K + F N N F S G + N +KSEVK E Q I ++ ++++G G+ + K ++ V + K + RKQVNGK VA+LFASK+ Q+E+I+CEE R AT KL+ +YDEIRP+IE+ +DS D++PT VAEKWIEA+C+K KA+ DL+FS++KNVVCP PH N
Sbjct: 101 RGWGLLADENIKAGMFIIEYCGEVISSDEAKLRAQTYETQGLRDAYIISLNANYYIDATRKGSLGRFINHSCQPNCETRKWTVLGETRVGIFATQDIAVGTELAYDYNFEWYGGVNVRCLCGAPNCSIFLGAKSQGFQEHNHVWEDGDDRYTVDEFPLYDSAEDEPLDKVKVTDSTLPETLLT--------VKTESFGLNN------NGFGYKFKS--FSGSVSGN-IKSEVK-------ESGQNAIIVSGAKANDAFSNGLGTGSAKRAAKRVQNRKQKLSGRKQVNGKRVAQLFASKKVQDELIKCEEERNLATAKLDAVYDEIRPAIEQRERDSLDSLPTNVAEKWIEASCSKLKADFDLYFSVVKNVVCP-PHTN 454
Match: A0A830DSU6 ((Histone-lysine n-methyltransferase ashh1 {ECO:0000313|EMBL:GFQ08742.1}))
HSP 1 Score: 409.068 bits (1050), Expect = 5.338e-139
Identity = 214/385 (55.58%), Postives = 263/385 (68.31%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVAS------QPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETD----LFPEKTQQDISQPR-----LSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQT 382
R W ++ G F+IEYCGE+ISSE+AKQRS +YEAQGL DAYIISLNAN FIDATKKGS+A QPNCETRKWTV GETRVGIFAK+DIA+G EL YDYNFEWYGGA VRCLCGA NCS+FLGAKSHGFQE+NHVWEDGDDRYTV+ PLYDSAEDEPF D + + ++ P ++ ++N+ + + V G L + +E + + LF + T IS+ R +YN G + K RSQ K ++K RK+V K V +LFASK+A+EEV R EEL+ +AT LN LYDEIRP IEEH +DSQD+V T+VAEKWI+ATC+KW+AE + HFSI+KNV+CP A E+T
Sbjct: 21 RGWGLLADQQIKAGQFIIEYCGEVISSEKAKQRSHSYEAQGLIDAYIISLNANLFIDATKKGSLARFINHSCQPNCETRKWTVLGETRVGIFAKEDIAIGIELGYDYNFEWYGGATVRCLCGAANCSLFLGAKSHGFQEYNHVWEDGDDRYTVENIPLYDSAEDEPFPGP-DCTMIPGKHESM---ENYPPVIENNIDSNYSVSTRD----------VSGKLVVTEKNTETESSLEDRRQLFSQ-TNAMISRIRSNSACRNYNIGPSTKSKKRSQQNMKQKTKTFGRKKVGSKPVVELFASKKAREEVTRYEELKNKATSVLNSLYDEIRPEIEEHERDSQDSVSTSVAEKWIQATCSKWRAEFNFHFSIVKNVMCPSKAAGEET 390
Match: A0A5A7P0L5 (tRNA-uridine aminocarboxypropyltransferase {ECO:0000256|ARBA:ARBA00012386} (2.5.1.25 {ECO:0000256|ARBA:ARBA00012386}) (Fragment))
HSP 1 Score: 424.476 bits (1090), Expect = 1.315e-138
Identity = 226/401 (56.36%), Postives = 275/401 (68.58%), Query Frame = 0
Query: 13 RSWMGSVGWRVYKGDFVIEYCGEIISSEEAKQRSQAYEAQGLRDAYIISLNANYFIDATKKGSVA------SQPNCETRKWTVFGETRVGIFAKQDIAVGTELAYDYNFEWYGGANVRCLCGAPNCSIFLGAKSHGFQEHNHVWEDGDDRYTVDMFPLYDSAEDEPFTKHFDSASLANTMYTACGNKDNPMKVDGFAETNHFIELTNIISEPFGSAAVEGPLPINAVKSEVKKETDL-------FPEKTQQDISQPR-----LSYNSGSGSTPKSRSQHVPKSRSKQASRKQVNGKNVAKLFASKQAQEEVIRCEELRTEATKKLNDLYDEIRPSIEEHAKDSQDNVPTAVAEKWIEATCTKWKAELDLHFSIIKNVVCPRPHANEQTTSAEGDHLVKQLI 395
R W ++ G F+IEYCGE+ISSEEAKQRSQ YEAQGL+DAYIISLNAN+FIDATKKGS+A QPNCETRKWTV GETRVGIFAK+DI GTELAYDYNFEWYGG VRCLCGA NCS+FLGAKSHGFQE+ HVWEDGDDRYTV+ PLYDSAEDEPF + ++ + + N + M+ G + E ++ + +V P+ + +E K TDL +T IS+ R +YN G ++ K RSQ K R+K RKQV+ K V +LFASK+A+EE+IR EEL+ EAT LN LYDEIRP+IEEH +DSQD+V T+VAEKWI+ATC+KWKAE D HFSI+KNV+CP + E S G+HLV+ I
Sbjct: 511 RGWGLVANQKIKAGQFIIEYCGEVISSEEAKQRSQTYEAQGLKDAYIISLNANHFIDATKKGSLARFINHSCQPNCETRKWTVLGETRVGIFAKEDIVDGTELAYDYNFEWYGGLTVRCLCGAANCSLFLGAKSHGFQEYYHVWEDGDDRYTVENIPLYDSAEDEPFPR--PDFTMIAVKHESTVNDPSLMENGGGSIVK--FEAASVTQSNY---SVSPPMSAKPMAAERNKATDLSVGDKGQVFSQTNSMISRIRSNSACRNYNIGPNTSSKKRSQQKLKPRTKTFGRKQVSYKPVVELFASKKAREEIIRYEELKKEATSVLNSLYDEIRPAIEEHERDSQDSVSTSVAEKWIQATCSKWKAEFDFHFSIVKNVLCPP--SEEANPSGCGEHLVQNEI 902
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YSA9 | E-Value: 8.638e-157, PID: 58.73 | (Putative histone-lysine N-methyltransferase ASHH1... [more] |
| A0A5J5BWW5 | E-Value: 6.435e-154, PID: 58.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A1S3X7D8 | E-Value: 7.114e-150, PID: 57.55 | (histone-lysine N-methyltransferase ASHH1-like {EC... [more] |
| A0A7J7HR08 | E-Value: 1.078e-146, PID: 57.71 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5955... [more] |
| A0A118K2L2 | E-Value: 2.757e-144, PID: 56.74 | (AWS-like protein {ECO:0000313|EMBL:KVI04548.1})[more] |
| A0A5N6PRC0 | E-Value: 6.903e-141, PID: 56.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6795... [more] |
| A0A022RAF5 | E-Value: 5.880e-140, PID: 55.30 | (Uncharacterized protein {ECO:0000313|EMBL:EYU3672... [more] |
| A0A251U5V6 | E-Value: 1.177e-139, PID: 57.78 | (Putative SET domain group 26 {ECO:0000313|EMBL:OT... [more] |
| A0A830DSU6 | E-Value: 5.338e-139, PID: 55.58 | (Histone-lysine n-methyltransferase ashh1 {ECO:000... [more] |
| A0A5A7P0L5 | E-Value: 1.315e-138, PID: 56.36 | tRNA-uridine aminocarboxypropyltransferase {ECO:00... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |