Resource Type:
Polypeptide
Name:
DCAR_031172
Identifier:
DCAR_031172.mRNA-protein
Sequence:
MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYN
DVNVGDENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSN
NTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPS
HNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGE
LHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAA
CKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPM
NDNAGRGGGTNYPSGDSGRGYGRGGWGRGQGVGNRGGGHMRGMGGNMGPK
NMPNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMG
RGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMG
MMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGD
PGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYR
EEKDDYREHRQKDRDSYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDAD
YGKRRRLPSD*
Sequence Length:
611
Sequence Checksum:
22490d2519514cc65e685b4987a29c88
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_031172, derives from mRNA, DCAR_031172. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A194 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 437/655 (66.72%), Postives = 493/655 (75.27%), Query Frame = 0
Match: A0A5B7A194 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 437/655 (66.72%), Postives = 493/655 (75.27%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD----------------------------------ENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNH--SNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKS----QVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNM-PNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MD +AEEQLDYE+EEYG QK QY GGGAI ALA+DE IGEDDEYDDLYNDVNVG+ E + P+E +I GV +GKY N + FP+PKE L + P + + SQK P HDAQA N+ FRG P+ Q G++ DMSGKV N P N G P+GVSQ+P N NVN NMNR I N+N IR A +NG TMLFVGELHWWTTD+++E+V SQ+G VKEIKFFDE+ASGKSKGYCQVEFYD +AAACKEGMNG++FNGRACVVAFASPQTIKQMGASY+NK+ Q QPQSQ QGRRPMND GRGGG NY SGD+GR YGRGGWGRG GGG MRG GG MG K+M A GVG GGN G YGQG+ GPAFGG PGG MHPQGMMG GFDPTYMGRG+GYGGF GPAFPGM+P FP VN MG+AGV+PHVNPAFFGRGMA NGMGMMG AGMDGPH+GMW D++MGGW GEEHG+RTRESSYGGEDG SEYGYG+ +EK RSN SREK+RGSERDW+GNSEKRHRDER+ DRD+ DR++RYREEKD YREHRQK+RD Y+DD DRGQ+S RSRSRSR PEEDHRSR+RD DYGKRRRLPS+
Sbjct: 1 MDHMAEEQLDYEDEEYGGAQKTQYQGGGAIPALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSVGAGTEGIQAQKTSVPEPRAETVAPQELSIPGVATEGKYPNAVIHFPEPKEGLTADRGPETVTVDISQKGRIPEVTHDAQAGNLAFRGSTPMPQKIGVHSADMSGKVANASAPLLNSGIGGPRGVSQMPANQMSMNVNVNMNRPIDNENQIRSAVENGGTMLFVGELHWWTTDSDLENVLSQFGRVKEIKFFDERASGKSKGYCQVEFYDVVAAAACKEGMNGHVFNGRACVVAFASPQTIKQMGASYINKTQNQPQSQPQSQSQGRRPMNDGVGRGGGMNYSSGDAGRNYGRGGWGRGGQGILNRGPGGGPMRGRGGAMGTKSMVGAAAGVGTGGNGGAYGQGLVGPAFGGHPGGLMHPQGMMGAGFDPTYMGRGAGYGGFMGPAFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAPNGMGMMGTAGMDGPHAGMWTDASMGGWGGEEHGRRTRESSYGGEDGASEYGYGEASHEKGVRSNATSREKDRGSERDWTGNSEKRHRDEREIDRDKSDRDYRYREEKDGYREHRQKERDLGYEDDWDRGQSSLRSRSRSRAMPEEDHRSRTRDVDYGKRRRLPSE 655
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P3E3 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSR84805.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 420/653 (64.32%), Postives = 484/653 (74.12%), Query Frame = 0
Match: A0A2R6P3E3 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSR84805.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 420/653 (64.32%), Postives = 484/653 (74.12%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD--------ENILP--------------------------KEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA-QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGG-GTNYPSGDSGRGYGRGGWGRGQGVGNRGGGH--MRGMGGNMGPKNMP-NAPGVGAGGNAGG-YGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS---YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP A+EQLDY +EEY QKMQY GGGAISAL +DE IGEDDEYDDLYNDVNVG+ E +P ++ ++HGV +GKY+N G FP+ KE L + +G+ + +QK G +DAQA N+GF+G V G++ ++S + E P N G P+GV Q P N ++N N++R +AN+N +RPA +NG TMLFVGELHWWTTDAE+ESV SQYG VKEIKFFDE+ASGKSKGYCQVEFYDS SAAACKEGMNGY+FNGRACVV FAS QTI+QM SY NK+QVQP SQ QGRRPMND GRGG G N P GD+GR YGRGGWGRGQG+ NRG G MRG GG MG KNM NA GVG+G AGG YGQGM GP FGGP GG MHPQGMMG GFDPTY+GRG+GYGGF GP FPGM+P FP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMD H+GMW+D +MGG GEEHG+RTRESSYGGEDG SEYGYG+ EK RSN S EKERGSERDWSGNSEKRHRDER+ +RDR DR+ YREEKD YR++RQ++R+ Y+DD DRGQ+SSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPTADEQLDYGDEEYVGAQKMQYRGGGAISALVDDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPAPGLSNGGFQAQKTSLHESRPEAAGSQQPSVHGVGTEGKYSNAGTHFPEQKEGLAVDR-GQMGTTDIAQKGRLQGMPYDAQAGNLGFQGSNHVVPHKIGVDSTEISARAATESAPPLNSGTGGPRGVPQKPANQMSMNINVHRPMANENQVRPALENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVSAAACKEGMNGYVFNGRACVVTFASAQTIRQMATSYANKNQVQPPSQSQGRRPMNDGVGRGGNGMNQPGGDAGRNYGRGGWGRGQGILNRGSGAGPMRGRGGAMGAKNMVGNASGVGSGAIAGGAYGQGMVGPTFGGPLGGLMHPQGMMGAGFDPTYIGRGAGYGGFSGPPFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGPTGMDVHHAGMWSDMSMGGGGGEEHGRRTRESSYGGEDGNSEYGYGEANYEKGARSNVGSWEKERGSERDWSGNSEKRHRDEREMERDRPDRDCMYREEKDGYRDNRQRERERDLGYEDDWDRGQSSSRSRSRSKAMPEEDHR-RSRDADYGKRRRLPSE 651
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HEP5 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ21194.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 420/653 (64.32%), Postives = 484/653 (74.12%), Query Frame = 0
Match: A0A7J0HEP5 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ21194.1}))
HSP 1 Score: 704.901 bits (1818), Expect = 0.000e+0
Identity = 420/653 (64.32%), Postives = 484/653 (74.12%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD--------ENILP--------------------------KEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA-QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGG-GTNYPSGDSGRGYGRGGWGRGQGVGNRGGGH--MRGMGGNMGPKNMP-NAPGVGAGGNAGG-YGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS---YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP A+EQLDY +EEY QKMQY GGGAISAL +DE IGEDDEYDDLYNDVNVG+ E +P ++ ++HGV +GKY+N G FP+ KE L + +G+ + +QK G +DAQA N+GF+G V G++ ++S + E P N G P+GV Q P N ++N N++R +AN+N +RPA +NG TMLFVGELHWWTTDAE+ESV SQYG VKEIKFFDE+ASGKSKGYCQVEFYDS SAAACKEGMNGY FNGRACVV FAS QTI+QM SY NK+QVQP SQ QGRRPMND GRGG G N P GD GR YGRGGWGRGQG+ NRG G MRG GG MG KNM NA GVG+G AGG YGQGM GP FGGP GG MHPQGMMG GFDPTY+GRG+GYGGF GP FPGM+P FP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMD H+GMW+D++MGG GEEHG+RTRESSYGGEDG SEYGYG+ EK RSN S EKERGSERDWSGNSEKRHRDER+ +RDR DR+ YRE+KD YR++RQ++R+ Y+DD DRGQ+SSRSRSRS+V PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPTADEQLDYGDEEYVGAQKMQYRGGGAISALVDDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPAPGLSNGGFQAQKTSLHESRPEVAGSQQPSVHGVGTEGKYSNAGTHFPEQKEGLAVDR-GQMGTTDIAQKGRLQGMPYDAQAGNLGFQGSNHVVPHKIGIDSTEISARAATESAPPLNSGTGGPKGVPQKPANQMSMNINVHRPMANENQVRPALENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVSAAACKEGMNGYAFNGRACVVTFASAQTIRQMATSYANKNQVQPPSQSQGRRPMNDGVGRGGNGMNQPGGDVGRNYGRGGWGRGQGILNRGSGAGPMRGRGGAMGAKNMVGNASGVGSGAIAGGAYGQGMVGPTFGGPLGGLMHPQGMMGAGFDPTYIGRGAGYGGFSGPPFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGPTGMDVHHAGMWSDTSMGGGGGEEHGRRTRESSYGGEDGTSEYGYGEANYEKGARSNAGSWEKERGSERDWSGNSEKRHRDEREMERDRPDRDCMYREDKDGYRDNRQRERERDLGYEDDWDRGQSSSRSRSRSKVMPEEDHR-RSRDADYGKRRRLPSE 651
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EYH9 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY91492.1}))
HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 409/655 (62.44%), Postives = 478/655 (72.98%), Query Frame = 0
Match: A0A7J0EYH9 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFY91492.1}))
HSP 1 Score: 689.108 bits (1777), Expect = 0.000e+0
Identity = 409/655 (62.44%), Postives = 478/655 (72.98%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD-------------------------ENILPK--------EANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGG-----TNYPSGDSGRGYGRGGWGRGQG-VGNRGGGHMRGMGGN--MGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP+AEEQLDY +EEY QKMQY GAISALA+DE IGEDDEYDDLYNDVNVG+ + LP+ + +HGVP +GKY+N+G FP PKE L + + + + +QK G HDAQ N+G +G + TG++ ++MS KV NE P N G P Q+P N + NVN N+NR +A +N RPA +N TML+VGELHWWTTDA++ESV SQYG VKEIKFFDE+ASGKSKGYC VEFYD+A+AA CKEGMNG+ FNGRAC+V FAS QT+KQM +SYMNK+QVQPQSQ QGRRPMND GR G N P GD+G +GRGGWGRG + NRG G G MG +NM NA G+G+G G YGQG+ GPAF GPPGG MHPQGMMG GFDPTYM RG+GYGGF GP FPGM+P FP VNAMG AGV+PHVNPAFFGRGMAANGMGMMG+ GMDG H+GMW+D++MGGW GEEH +RTRESSYGGEDG SEYGYG+ +EK RSN ASREKERGSERDWSG+SEKRHR ER+ +RDR DR+HRYREEKD Y++HRQ++ D Y+DD DRGQASSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYGDEEYVGAQKMQYQAAGAISALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSAGVGNGGFQAQKTSLPEPRSGAAGSQQALHGVPIEGKYSNSGTHFPKPKEELALDK-GQVVTTDIAQKVRVHGMTHDAQGGNLGIQGSILMPLKTGVDSIEMSVKVVNESSPLVNSGTGGPTNAPQMPANQTGMNVNVNVNRPMAYENQFRPALENSETMLYVGELHWWTTDADLESVLSQYGRVKEIKFFDERASGKSKGYCHVEFYDAAAAAVCKEGMNGHAFNGRACIVTFASQQTVKQMPSSYMNKNQVQPQSQSQGRRPMNDGLGRDGVGRGGGMNQPGGDAGENFGRGGWGRGGQGILNRGSGGGPTRGRGGPMGARNMVGNASGIGSGVGGGAYGQGLAGPAFVGPPGGLMHPQGMMGAGFDPTYMSRGAGYGGFSGPPFPGMLPSFPAVNAMGFAGVAPHVNPAFFGRGMAANGMGMMGSTGMDGHHAGMWSDTSMGGWGGEEHSRRTRESSYGGEDGASEYGYGEASHEKGVRSNAASREKERGSERDWSGSSEKRHRGEREMERDRSDRDHRYREEKDGYQDHRQREHDMGYEDDWDRGQASSRSRSRSKAMPEEDHR-RSRDADYGKRRRLPSE 653
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZWA4 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 428/651 (65.75%), Postives = 483/651 (74.19%), Query Frame = 0
Match: A0A5B6ZWA4 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 428/651 (65.75%), Postives = 483/651 (74.19%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD----------------------------------ENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNH--SNVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNM-PNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP+AEEQLDY +EEYG QKMQY GGGAISALA+DE IGEDDEYDDLYNDVNVG+ + + P+E +I GV +GKY N + FP+ KE L + P +G+ + SQK P DAQA N+ FRG P+ G++P DMSGK+ NEP P N G P+GV Q+P N NVN NMNR I N+N IRPA +NG TMLFVGELHWWTTDA++E+V SQYG VKEIKFFDE+ASGKSKGYCQVEFYD +AAACKEGMNG++FNGRACVVAFAS Q QPQSQ QGRRPMND GRGGG NYPSGD+GR YGRGGWGRG GGG MRG GG MG K+M A GVG GGN G YGQG+ GPAFGG PGG MHPQGMMG GFDPTYMGRG+GYGGF GPAF GMMP FP VN MG+AGV+PHVNPAFFGRGMA+NGMGMMG AGMDGPH+GMW D++MGGW GEEHG+RTRESSYGGEDG SEYGYG+ +EK RSN SREK+RGSERDW+GNSEKRHRDER+ DRD+ DR++RYREEKD YREHRQK+RD Y+DD DRGQ+S RSRSRSR PEEDHRSR+RD DYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYGDEEYGGTQKMQYQGGGAISALADDEMIGEDDEYDDLYNDVNVGEGLLQLQRSEAPVPSVGAGTGGLQVQKTNGSEPRADAVAPQELSIPGVATEGKYPNAVIRFPELKEGLTADRGPEMGTVDVSQKGRVPEMTDDAQAGNLAFRGSTPMPHKIGVDPADMSGKLANEPAPLLNSGAGGPRGVLQMPTNQMGMNVNVNMNRPIVNENQIRPALENGGTMLFVGELHWWTTDADLENVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDVVAAAACKEGMNGHVFNGRACVVAFAS-------------XPQSQPQSQSQGRRPMNDGMGRGGGMNYPSGDAGRNYGRGGWGRGGQGILNRGPGGGPMRGRGGAMGTKSMVGAAAGVGTGGNGGAYGQGLVGPAFGGHPGGLMHPQGMMGAGFDPTYMGRGAGYGGFSGPAFHGMMPSFPAVNTMGLAGVAPHVNPAFFGRGMASNGMGMMGTAGMDGPHAGMWTDASMGGWGGEEHGRRTRESSYGGEDGASEYGYGEASHEKGVRSNATSREKDRGSERDWTGNSEKRHRDEREIDRDKSDRDYRYREEKDGYREHRQKERDLGYEDDWDRGQSSLRSRSRSRAMPEEDHRSRTRDVDYGKRRRLPSE 638
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V1F7 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027096899.1}))
HSP 1 Score: 685.641 bits (1768), Expect = 0.000e+0
Identity = 412/658 (62.61%), Postives = 478/658 (72.64%), Query Frame = 0
Match: A0A6P6V1F7 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027096899.1}))
HSP 1 Score: 685.641 bits (1768), Expect = 0.000e+0
Identity = 412/658 (62.61%), Postives = 478/658 (72.64%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD-------------------------------------ENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKS--QVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGY--GRGGWGRGQGVGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+ E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P NP G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTD E+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+AAACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+ Q Q QSQ QGRRPMND AGRG GTNYPSGD+GR + G GQG+ N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++M GW GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLNPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDTELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAAAACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDTSM-GWGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UYA0 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 685.641 bits (1768), Expect = 0.000e+0
Identity = 412/658 (62.61%), Postives = 478/658 (72.64%), Query Frame = 0
Match: A0A068UYA0 (RRM domain-containing protein {ECO:0000259|PROSITE:PS50102})
HSP 1 Score: 685.641 bits (1768), Expect = 0.000e+0
Identity = 412/658 (62.61%), Postives = 478/658 (72.64%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD-------------------------------------ENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKS--QVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGY--GRGGWGRGQGVGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+ E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P NP G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTD E+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+AAACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+ Q Q QSQ QGRRPMND AGRG GTNYPSGD+GR + G GQG+ N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++M GW GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLNPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDTELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAAAACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDTSM-GWGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6REC5 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSS26919.1}))
HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 415/656 (63.26%), Postives = 483/656 (73.63%), Query Frame = 0
Match: A0A2R6REC5 ((Cleavage and polyadenylation specificity factor subunit like {ECO:0000313|EMBL:PSS26919.1}))
HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 415/656 (63.26%), Postives = 483/656 (73.63%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD-------------------------ENILP---------KEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHS--NVNANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGG-----TNYPSGDSGRGYGRGGWGRGQGV---GNRGGGHMRGMGGNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP+AEEQLDYE+EEY QKMQY GAISALA+DE IGEDDEYDDLYNDVNVG+ + LP ++A++HGVP +GKY+N+G FP PKE L + + + + +QK G HDAQ N+G +G + G++ +MS KV NE P N P Q+P N + NVN N+NR +A +N RPA +NG TML+VGELHWWTTDA++ESV SQYG VKEIKFFDE+ASGKSKGYC VEFYD+A+AA CKEGMNG+ FNGRAC+V FAS QT+KQM +SYMNK+QVQPQSQ QGRRPMND GR G N P GD+GR +GRGGWGRG GGG MRG GG MG +NM NA G+G+G G YGQG+ GPAF GPPGG MHPQGMMG GFDPTYMGRG+GYGGF GP FPGM+P FP VNAMG AGV+PHVNPAFFGRGMAANGMGMMG+ GMDG H+GMW+D +MGGW GEEH +RTRESSYGGEDG SEYGYG+ +EK RSN AS+EKERGSERDWSGNSEKRHR ER+ +RDR DR+HRYREEKD Y++HRQ++ D+ Y+DD DRGQASSRSRSRS+ PEEDHR RSRDADYGKRRRLPS+
Sbjct: 1 MDPMAEEQLDYEDEEYVGAQKMQYQAAGAISALADDEMIGEDDEYDDLYNDVNVGEGFLQLQRSEAPVPSAGVGNGGFQVQKTSLPEPRSGAAGSQQASVHGVPIEGKYSNSGTHFPKPKEELALDK-GQVVTTDIAQKVRVHGMTHDAQGGNLGIQGSYLMPLKIGVDSTEMSVKVVNESAPLVNSGTDGPTNAPQMPANQAGMNVNVNVNRPMAYENQFRPALENGETMLYVGELHWWTTDADLESVLSQYGRVKEIKFFDERASGKSKGYCHVEFYDAAAAAVCKEGMNGHAFNGRACIVTFASQQTVKQMPSSYMNKNQVQPQSQSQGRRPMNDGLGRDGVGRGGGMNQPGGDAGRNFGRGGWGRGGQGILNRGSGGGPMRGRGGPMGARNMVGNASGIGSGVGGGAYGQGLAGPAFVGPPGGLMHPQGMMGAGFDPTYMGRGAGYGGFSGPPFPGMLPSFPAVNAMGFAGVAPHVNPAFFGRGMAANGMGMMGSTGMDGHHAGMWSDMSMGGWGGEEHSRRTRESSYGGEDGASEYGYGETSHEKGVRSNAASQEKERGSERDWSGNSEKRHRGEREMERDRSDRDHRYREEKDGYQDHRQREHDTGYEDDWDRGQASSRSRSRSKAIPEEDHR-RSRDADYGKRRRLPSE 654
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VCP3 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027099742.1, ECO:0000313|RefSeq:XP_027099743.1}))
HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 411/658 (62.46%), Postives = 477/658 (72.49%), Query Frame = 0
Match: A0A6P6VCP3 ((cleavage and polyadenylation specificity factor subunit 6-like {ECO:0000313|RefSeq:XP_027099742.1, ECO:0000313|RefSeq:XP_027099743.1}))
HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 411/658 (62.46%), Postives = 477/658 (72.49%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD-------------------------------------ENILPKEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKSVAPGTIHDAQASNMGFRGPAPVA--QNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNVNANMN--RQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKS--QVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGY--GRGGWGRGQGVGNRGGGHMRGMG-GNMGPKNMP-NAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRD-SYKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP +EQLD+ +EEYG QKMQYH GGAI ALAEDE I EDDEYDDLYNDVNVG+ E ++ + NI +GKYTN+GV FPD K L ++ V + + SQK AP IH++QA N+G++G VA Q G+ +DMSGKV EP P P G P+ + QVP NH + ++N+N R + +N +RPA +NG TMLFVGELHWWTTDAE+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF D A+A ACKEGMNG++FNGRACVVA A+PQTIKQM ASYMNK+ Q Q QSQ QGRRPMND AGRG GTNYPSGD+GR + G GQG+ N+ + G G G +G KNM NAPG G G G YGQG+ GPAFGGPP G MHPQ MMG GFDPTYMGRG+GYGGF GPAFPGM+PPFP VN MG+AGV+PHVNPAFFGRGMAANGMGMMG GMDGPH+GMW D++M GW GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ ASREKERGSERDWSG+S++RHRDER+ DRDRYDR+HRYREEKD YRE+R K+RD Y+DD DRGQ S V PEE HRSRSRDADYGKRRRLPS+
Sbjct: 1 MDPGGDEQLDFGDEEYGGSQKMQYHRGGAIPALAEDEMINEDDEYDDLYNDVNVGEGFLQMQQQQRSETPRAPLGVGNGGFPAPRASVQDPRAETVVTQGVNIPRSATEGKYTNSGVRFPDQKSGLASD-VGALPGTDASQKGRAPEIIHNSQAGNLGYQGSMAVAMSQKVGVESLDMSGKVTGEPGPLLKPVAGAPRVIPQVPANHMSSSSNVNSIRPVVTENQVRPAVENGNTMLFVGELHWWTTDAELESVLTQYGKVKEIKFFDERASGKSKGYCQVEFSDPAAATACKEGMNGHVFNGRACVVALATPQTIKQMAASYMNKTQVQSQSQSQPQGRRPMNDGAGRGNGTNYPSGDAGRNFGRGGWAGRGGQGMPNKAPVGVPGRGRGTVGAKNMMGNAPGGGNGVTGGAYGQGLAGPAFGGPPTGLMHPQAMMGPGFDPTYMGRGAGYGGFSGPAFPGMIPPFPAVNHMGLAGVAPHVNPAFFGRGMAANGMGMMGTGGMDGPHAGMWTDASM-GWGGEEHGRRTRESSYGGEDNASEYGYGEASHDKGVRSSAASREKERGSERDWSGSSDRRHRDEREHDRDRYDRDHRYREEKDSYREYRHKERDPGYEDDYDRGQPSRSRSRSRAV-PEEHHRSRSRDADYGKRRRLPSE 655
BLAST of DCAR_031172 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IT71 ((Putative cleavage and polyadenylation specificity factor subunit-like {ECO:0000313|EMBL:JAP35174.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 397/651 (60.98%), Postives = 464/651 (71.27%), Query Frame = 0
Match: A0A0V0IT71 ((Putative cleavage and polyadenylation specificity factor subunit-like {ECO:0000313|EMBL:JAP35174.1}))
HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 397/651 (60.98%), Postives = 464/651 (71.27%), Query Frame = 0
Query: 1 MDPLAEEQLDYEEEEYGAPQKMQYHGGGAISALAEDENIGEDDEYDDLYNDVNVGD--------ENILP--------------------------KEANIHGVPNDGKYTNTGVPFPDPKERLPTEMVPNIGSNNTSQKS--VAPGTIHDAQASNMGFRGPAPVAQNTGLNPVDMSGKVGNEPVPSHNPNRGVPQGVSQVPPNHSNV--NANMNRQIANDNPIRPAGDNGATMLFVGELHWWTTDAEIESVSSQYGPVKEIKFFDEKASGKSKGYCQVEFYDSASAAACKEGMNGYIFNGRACVVAFASPQTIKQMGASYMNKSQVQPQSQQQGRRPMNDNAGRGGGTNYPSGDSGRGYGRGGWGRG-QGVGNRGGGHMRGMGGN-MGPKNMPNAPGVGAGGNAGGYGQGMGGPAFGGPPGGFMHPQGMMGGGFDPTYMGRGSGYGGFPGPAFPGMMPPFPNVNAMGIAGVSPHVNPAFFGRGMAANGMGMMGNAGMDGPHSGMWNDSNMGGWAGEEHGQRTRESSYGGEDGGSEYGYGDPGNEKSTRSNPASREKERGSERDWSGNSEKRHRDERDQDRDRYDREHRYREEKDDYREHRQKDRDS-YKDDGDRGQASSRSRSRSRVAPEEDHRSRSRDADYGKRRRLPSD 610
MDP A+EQLDY +EEYG KMQYHG G I ALAEDE +GEDDEYDDLYNDVN+G+ E +P +EA I G+ +GKY T V FP K P +T+QK+ A ++QA N G++G P+ Q G +P+ M K +E P N P+ V +P N N N NMN + ++ P RP+ +NG TMLFVGELHWWTTDAE+ESV +QYG VKEIKFFDE+ASGKSKGYCQVEF+D ASAAACKEGMNGY FNGRACVVAFA+PQTIKQMG+SY NK+Q Q QSQ QGRRPMN+ GRGG NY GD+GR +GRG WGRG G+ NRG G G MG KNM PG G G GQG+ GPAFGGPP G MHPQGMMG GFDP++MGRG+GYGGF GPAFPGMMPPFP VN MG+ GV+PHVNPAFF RGMAANGMGMM GMDGPH GMW D++ GGW GEEHG+RTRESSYGGED SEYGYG+ ++K RS+ SREKERGSERDWSGNS++RHRDER+ DRDR+D+EHRYREE+D YR++RQK+R+S Y++D DRGQ+SSRSRS+SR A EEDHRSRSRD +YGKRRR PS+
Sbjct: 1 MDPTADEQLDYGDEEYGGSHKMQYHGSGTIPALAEDEMMGEDDEYDDLYNDVNIGEGFLQLQRSEVPVPSVDTGNGNFQAQKDSFPASRAGGLGSEEAKIPGIATEGKYAGTEVQFPQQKGG-PVVERETERPADTAQKARPSAITMTLNSQAGNSGYQGSMPMPQKIGADPMAMPEKNASEATPLMNSVVAGPRVVPHMPTNQLNSSGNVNMNNPVISETPFRPSLENGNTMLFVGELHWWTTDAELESVLTQYGNVKEIKFFDERASGKSKGYCQVEFFDPASAAACKEGMNGYNFNGRACVVAFATPQTIKQMGSSYANKTQNQVQSQPQGRRPMNEGVGRGG-PNYTPGDAGRNFGRGSWGRGGPGMPNRGPGGGPVRGRGAMGSKNMMVNPGAGNGAGGAF-GQGLAGPAFGGPPAGLMHPQGMMGPGFDPSFMGRGAGYGGFSGPAFPGMMPPFPAVNPMGLPGVAPHVNPAFFARGMAANGMGMMSATGMDGPHPGMWTDTSGGGWGGEEHGRRTRESSYGGEDNASEYGYGEVSHDKGARSSAVSREKERGSERDWSGNSDRRHRDEREHDRDRHDKEHRYREERDGYRDYRQKERESEYEEDYDRGQSSSRSRSKSRAAQEEDHRSRSRDTNYGKRRRAPSE 648
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A194 | E-Value: 0.000e+0, PID: 66.72 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2R6P3E3 | E-Value: 0.000e+0, PID: 64.32 | (Cleavage and polyadenylation specificity factor s... [more] |
| A0A7J0HEP5 | E-Value: 0.000e+0, PID: 64.32 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A7J0EYH9 | E-Value: 0.000e+0, PID: 62.44 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A5B6ZWA4 | E-Value: 0.000e+0, PID: 65.75 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A6P6V1F7 | E-Value: 0.000e+0, PID: 62.61 | (cleavage and polyadenylation specificity factor s... [more] |
| A0A068UYA0 | E-Value: 0.000e+0, PID: 62.61 | RRM domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2R6REC5 | E-Value: 0.000e+0, PID: 63.26 | (Cleavage and polyadenylation specificity factor s... [more] |
| A0A6P6VCP3 | E-Value: 0.000e+0, PID: 62.46 | (cleavage and polyadenylation specificity factor s... [more] |
| A0A0V0IT71 | E-Value: 0.000e+0, PID: 60.98 | (Putative cleavage and polyadenylation specificity... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |