Resource Type:
Polypeptide
Name:
DCAR_029974
Identifier:
DCAR_029974.mRNA-protein
Sequence:
MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLL
LTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILK
VWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAME
GEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKM
ACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHT
LLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPG
TDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERL
SESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKE
RHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGS
VVICWQDRPLFSVCAWRCKR*
Sequence Length:
471
Sequence Checksum:
0afc5d057a689316c52add3580835b17
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_029974, derives from mRNA, DCAR_029974. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UJK6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP08492.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 369/470 (78.51%), Postives = 416/470 (88.51%), Query Frame = 0
Match: A0A068UJK6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP08492.1}))
HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 369/470 (78.51%), Postives = 416/470 (88.51%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPGLGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+ DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E QWRAL+QDLSARPEGPPHLRITGVH KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVKTGEALAISS LQLH LL+ +E +++ + P +S+G L + QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALWGLSPKIMVV+EQDSNHNG+NLMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NIIACEG RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLQMFPMMSLSPGLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKTGEALAISSVLQLHALLATDEEMRKKSPMVPKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASAKLDSFLNALWGLSPKIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DZT2 ((Uncharacterized protein {ECO:0000313|EMBL:THG09018.1}))
HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 361/471 (76.65%), Postives = 408/471 (86.62%), Query Frame = 0
Match: A0A4S4DZT2 ((Uncharacterized protein {ECO:0000313|EMBL:THG09018.1}))
HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 361/471 (76.65%), Postives = 408/471 (86.62%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGT-DSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSS+TS+P Q P +SPG GS YPWLKELKSEDRGLYLIHLLL A HVATGSLENAN+ DQIS LASP+GDTMQRIA+YFTEALA RILK WPGLYKALHST ISL SE+I+ RK+FFE FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE QW ALI+DLSARPEGPPHLRITGVH KEVL++MA +LTEEA++LDIPFQFN +VSK+E+LDIEKLRVKTGEALAISS LQLHTLL+ DE +++ +TP N++GV L +T QM + TLG+ L+KD++NG+SP + DS SSSP S + ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL E+LYFYAALFDCLESTLP+TS ERLK+EK LFGEEI++II EG RK+RHEKLE+WIQRLE AGFG VPLSYY MLQARRLLQSYSCDGYRIKEENG VV+CWQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSITSTPLQAFPIMSLSPGFGSAYPWLKELKSEDRGLYLIHLLLASANHVATGSLENANITLDQISQLASPEGDTMQRIAAYFTEALAERILKGWPGLYKALHSTRISLVSEEILVRKLFFELFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWGALIKDLSARPEGPPHLRITGVHQQKEVLEQMAHILTEEADRLDIPFQFNQVVSKVEDLDIEKLRVKTGEALAISSVLQLHTLLANNDELRKKSAMTPNNANGVNLQRTLQMNQRTLGELLEKDLVNGYSPTSHDSASSSPLSLNTSARMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYFYAALFDCLESTLPKTSLERLKVEKMLFGEEIKDIITSEGAERKKRHEKLEKWIQRLELAGFGSVPLSYYAMLQARRLLQSYSCDGYRIKEENGCVVVCWQDRSLFSVSAWRCRR 471
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TMG8 ((scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027079709.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 367/470 (78.09%), Postives = 415/470 (88.30%), Query Frame = 0
Match: A0A6P6TMG8 ((scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027079709.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 367/470 (78.09%), Postives = 415/470 (88.30%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPGLGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+ DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E QWRAL+QDLSARPEGPPHLRITGVH KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVKTGEALAISS LQLH LL+ +E +++ + P +S+G L + QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALW LSPKIMVV+EQD+NHNG+NLMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NIIACEG RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLQMFPMMSLSPGLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKTGEALAISSVLQLHALLATDEEMRKKSPMVPKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASAKLDSFLNALWSLSPKIMVVAEQDANHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P829 ((Scarecrow-like protein {ECO:0000313|EMBL:PSR86801.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 367/471 (77.92%), Postives = 412/471 (87.47%), Query Frame = 0
Match: A0A2R6P829 ((Scarecrow-like protein {ECO:0000313|EMBL:PSR86801.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 367/471 (77.92%), Postives = 412/471 (87.47%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADE-PHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP + P +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA HVATGSLENAN+ DQIS LASPDGDTMQRIASYF EALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITGVH KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+ DE +++ VTP N++G+ L ++ QM +GTLG+ L+KD++NG+SP DS SSSP S A++++D FLNALWGLSPK+MVV EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG RK RHEKLE+WIQRL+ AGFG VPLSYY +LQARRLLQSYSCDGYRIKEENG V++ WQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLKAFPMMSVSPGFGSPYPWLRELKSEERGLYLIHLLLACANHVATGSLENANITLDQISQLASPDGDTMQRIASYFNEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHILTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLANDDELLRKKSLVTPKNANGLNLQRSLQMNQGTLGELLEKDLVNGYSPSHDSASSSPLSLNASLRMDSFLNALWGLSPKVMVVMEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSLERLKVEKMLFGEEIKNIISCEGSERKRRHEKLEKWIQRLDLAGFGSVPLSYYSVLQARRLLQSYSCDGYRIKEENGCVMVYWQDRALFSVSAWRCRR 471
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0HCI1 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFZ20722.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 369/471 (78.34%), Postives = 411/471 (87.26%), Query Frame = 0
Match: A0A7J0HCI1 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFZ20722.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 369/471 (78.34%), Postives = 411/471 (87.26%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADE-PHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA HVATGSLENAN+ DQIS LASPDGDTMQRIASYF EALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITGVH KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+ DE +++ VTP N++G+ L ++ QM +GTLG+ L+KD++NG+SP DS SSSP S A+ ++D FLNALWGLSPK+MVV EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG RK RHEKLE+WIQRL+ AGFG VPLSYY MLQARRLLQSYSCDGYRIKEENG V++ WQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLQAFPMMSVSPGFGSPYPWLRELKSEERGLYLIHLLLACANHVATGSLENANITLDQISQLASPDGDTMQRIASYFNEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHMLTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLANDDEFLRKKSLVTPKNANGLNLQRSLQMNQGTLGELLEKDLVNGYSPSHDSASSSPLSLNASPRMDSFLNALWGLSPKVMVVMEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSLERLKVEKMLFGEEIKNIISCEGSERKRRHEKLEKWIQRLDLAGFGSVPLSYYSMLQARRLLQSYSCDGYRIKEENGCVMVYWQDRALFSVSAWRCRR 471
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AI02 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55618.1}))
HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 370/471 (78.56%), Postives = 411/471 (87.26%), Query Frame = 0
Match: A0A5B7AI02 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55618.1}))
HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 370/471 (78.56%), Postives = 411/471 (87.26%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENA++ DQIS LASP+GDTMQRIA+YF+EALA RILK WPGLYKALHST ISL SE+++ARK+FFE FPFLKVAFV+TNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITGVH KEVL++MA +L EEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+ L+ DE +++ +TP NS+G L + Q +GTLG+ L+KD++NG+SP DS SSSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+N+IACEG RKERHEKLE+WIQRL+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct: 1 MFQDDGSSSVTSSPLQIFPMMSLSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENADIALDQISQLASPNGDTMQRIAAYFSEALAERILKTWPGLYKALHSTRISLVSEEVLARKLFFELFPFLKVAFVVTNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQQKEVLEQMAHILIEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSFLASDDEHLRKKSPLTPKNSNG--LQRVLQRNQGTLGELLEKDLVNGYSPSHDSTSSSPLSLTASGKMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNVIACEGFERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 469
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AFW5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55622.1}))
HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 371/471 (78.77%), Postives = 411/471 (87.26%), Query Frame = 0
Match: A0A5B7AFW5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55622.1}))
HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 371/471 (78.77%), Postives = 411/471 (87.26%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENA++ DQIS LASP+GDTMQRIA+YF+EALA RILK WPGLYKALHST ISL SE+++ARK+FFE FPFLKVAFV+TNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITGVH KEVL++MA +L EEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+ L+ DE +++ +TP NS+G L + Q +GTLG+ L+KD++NG+SP DS SSSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNGS LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+NIIACEG GRKERHEKLE+WIQ L+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct: 1 MFQDDGSSSVTSSPLQIFPMMSLSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENADIALDQISQLASPNGDTMQRIAAYFSEALAERILKTWPGLYKALHSTRISLVSEEVLARKLFFELFPFLKVAFVVTNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQQKEVLEQMAHILIEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSFLASDDEHLRKKSPLTPKNSNG--LQRVLQRNQGTLGELLEKDLVNGYSPSHDSTSSSPLSLTASGKMDSFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNIIACEGTGRKERHEKLEKWIQWLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 469
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DAG2 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFS30979.1}))
HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 365/471 (77.49%), Postives = 410/471 (87.05%), Query Frame = 0
Match: A0A7J0DAG2 ((Scarecrow-like 3 {ECO:0000313|EMBL:GFS30979.1}))
HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 365/471 (77.49%), Postives = 410/471 (87.05%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQR-THVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SPG GSPYPWL+ELKSE+RGLYLIHLLL CA +VATGSLENAN+ DQIS LASPDGDTMQRIASYFTEALA RILK WPG+YKALHST ISL SE+I+ RK+F+E FPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITGVH KEVL++MA +LTEEAEKLDIPFQFN IVSKLE++DIEKLRVKTGEALAISS LQLHTLL+ DE ++ + VTP N++G+ L ++ QM +GTLG+ L KD++NG+SP DS SSSP A++++D FLNALWGLSPK+M+V+EQDSNHNGS LMERLSESLYFYAALFDCLESTLPRTS ERLK+EK LFGEEI+NII+CEG RK RHEKLE+W+QRL+ AGFG VPLSYY LQARRLLQSYSCDGYRI EENG V+I WQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLQAFPMMSLSPGFGSPYPWLRELKSEERGLYLIHLLLACANYVATGSLENANITLDQISQLASPDGDTMQRIASYFTEALAERILKNWPGIYKALHSTRISLVSEEILVRKLFYESFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGVHQKKEVLEQMAHILTEEAEKLDIPFQFNQIVSKLEDIDIEKLRVKTGEALAISSVLQLHTLLATDDELLRKISPVTPKNANGLNLQRSLQMNQGTLGELLDKDLVNGYSPSHDSASSSPVPLNASLRMDSFLNALWGLSPKVMLVTEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSMERLKVEKMLFGEEIKNIISCEGAERKRRHEKLEKWVQRLDLAGFGSVPLSYYSTLQARRLLQSYSCDGYRINEENGCVMIYWQDRALFSVSAWRCRR 471
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AJE6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55621.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 355/449 (79.06%), Postives = 393/449 (87.53%), Query Frame = 0
Match: A0A5B7AJE6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA55621.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 355/449 (79.06%), Postives = 393/449 (87.53%), Query Frame = 0
Query: 23 MSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEP-HQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
+SPG GSPYPWLKELKSE+RGLYLIHLLLTCA HVAT SLENAN+ DQIS LASPDGDTMQRI++YFTEALA RILK WPGLYKALHST ISL SE+I+ RK+F E PFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAE QWRAL+QDLSARPEGPPHLRITG+H KEVL++MA +LTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISS LQLH+LL+ DE +++ +TP NS+G L + QM +GTLG+ L+KD++NG+SP DS SSP S TA+ ++D FLNALWGLSPK+MVV+EQDSNHNG LMERL ESLYFYAALFDCLEST PRTS ERLK+EK LFGEEI+N+IACEG RKERHEKLE+WIQRL+ AGFG VPLSYYGMLQARRLLQ Y+CDGYRIKEENG VVICWQDR LFSV AWRCKR
Sbjct: 4 LSPGFGSPYPWLKELKSEERGLYLIHLLLTCANHVATSSLENANIALDQISQLASPDGDTMQRISAYFTEALAERILKTWPGLYKALHSTKISLVSEEILVRKLFLELLPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSARPEGPPHLRITGIHQQKEVLEQMAHILTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSVLQLHSLLASDDERIRKKSPLTPKNSNG--LQRVLQMNQGTLGELLEKDLVNGYSPSHDSAPSSPLSLTASGRMDSFLNALWGLSPKVMVVTEQDSNHNGLTLMERLLESLYFYAALFDCLESTFPRTSLERLKVEKMLFGEEIKNVIACEGFERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARRLLQGYNCDGYRIKEENGCVVICWQDRALFSVSAWRCKR 450
BLAST of DCAR_029974 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VKA1 ((LOW QUALITY PROTEIN: scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027102885.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 362/470 (77.02%), Postives = 409/470 (87.02%), Query Frame = 0
Match: A0A6P6VKA1 ((LOW QUALITY PROTEIN: scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_027102885.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 362/470 (77.02%), Postives = 409/470 (87.02%), Query Frame = 0
Query: 1 MFQDDGSSSVTSSPFQNSPYNLMSPGLGSPYPWLKELKSEDRGLYLIHLLLTCATHVATGSLENANLIFDQISHLASPDGDTMQRIASYFTEALANRILKVWPGLYKALHSTDISLFSEDIVARKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNAAESMQWRALIQDLSARPEGPPHLRITGVHPVKEVLDKMACVLTEEAEKLDIPFQFNPIVSKLENLDIEKLRVKTGEALAISSALQLHTLLSPADEPHQRTHVTPMNSDGVPLDKTSQMKEGTLGDFLQKDMINGHSPGTDSESSSPQSSTAAVQLDGFLNALWGLSPKIMVVSEQDSNHNGSNLMERLSESLYFYAALFDCLESTLPRTSTERLKLEKFLFGEEIRNIIACEGRGRKERHEKLERWIQRLEFAGFGKVPLSYYGMLQARRLLQSYSCDGYRIKEENGSVVICWQDRPLFSVCAWRCKR 470
MFQDDGSSSVTSSP Q P +SP LGSPY WLKELKSE+RGLYLIHLLLTCA HVATGSLENAN+ DQISHLA+PDGDTMQRIASYFTEALA+R+LK WPGLYKALHST IS+ SE+++ RKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNA+E QWRAL+QDLSARPEGPPHLRITGVH KE+LD+MA +L+E+AEKLDIPFQFNPIVSKLENLD+EKLRVK GEALAISS LQLH LL+ +E +++ + +S+G L + QM +GTLG+ L+KD++NG+SP +DS SSSP SS A+ +LD FLNALW LSPKIMVV+EQDSNHNG+NLMERLSESLYFYAALFDCLEST RTS ERLK+EK LFGEE +NIIACEG RKERHEKLE+WIQR + AGFG V LSYY MLQA+RLLQ+ SCDGY+IKEENG +VICWQDR LFSV AWRC+R
Sbjct: 1 MFQDDGSSSVTSSPLQMFPMMSLSPXLGSPYQWLKELKSEERGLYLIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRISVVSEEVLVRKMFFEFFPFLKVAFVITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQQKEILDQMAHILSEDAEKLDIPFQFNPIVSKLENLDVEKLRVKXGEALAISSVLQLHALLATDEEMRKKSPMVXKSSNGHHLQRVLQMNQGTLGELLEKDLVNGYSPSSDSASSSPLSSNASXKLDSFLNALWXLSPKIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTXSRTSVERLKVEKMLFGEEXKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWRCRR 470
| Match Name | Stats | Description |
|---|---|---|
| A0A068UJK6 | E-Value: 0.000e+0, PID: 78.51 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0849... [more] |
| A0A4S4DZT2 | E-Value: 0.000e+0, PID: 76.65 | (Uncharacterized protein {ECO:0000313|EMBL:THG0901... [more] |
| A0A6P6TMG8 | E-Value: 0.000e+0, PID: 78.09 | (scarecrow-like protein 3 {ECO:0000313|RefSeq:XP_0... [more] |
| A0A2R6P829 | E-Value: 0.000e+0, PID: 77.92 | (Scarecrow-like protein {ECO:0000313|EMBL:PSR86801... [more] |
| A0A7J0HCI1 | E-Value: 0.000e+0, PID: 78.34 | (Scarecrow-like 3 {ECO:0000313|EMBL:GFZ20722.1})[more] |
| A0A5B7AI02 | E-Value: 0.000e+0, PID: 78.56 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5561... [more] |
| A0A5B7AFW5 | E-Value: 0.000e+0, PID: 78.77 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5562... [more] |
| A0A7J0DAG2 | E-Value: 0.000e+0, PID: 77.49 | (Scarecrow-like 3 {ECO:0000313|EMBL:GFS30979.1})[more] |
| A0A5B7AJE6 | E-Value: 0.000e+0, PID: 79.06 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5562... [more] |
| A0A6P6VKA1 | E-Value: 0.000e+0, PID: 77.02 | (LOW QUALITY PROTEIN: scarecrow-like protein 3 {EC... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |