Resource Type:
Polypeptide
Name:
DCAR_027601
Identifier:
DCAR_027601.mRNA-protein
Sequence:
MYRSGSAPPTVEGSLNAVGGLLSGGGSGVSEEEIRSDPAYISYYYANVNM
NPRLPPPLLSKEDGRFAQRMQGAGSSAAIGDRRKIGREDGGDGSRSLFSV
QMEKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASG
HPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNV
NSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGRSSLDLQNV
NGSISFNGASGRVSQQADLVAALSEITLSNNLLDEENHARSRIQQEIDDH
QNLFHLQGDQYNNKQHPYLNRSEPGHLQSISQSGKGSYGYGVRAELNNSS
LLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFL
NYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMGDSRRMGGLAL
GPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGEGL
NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGM
SYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPE
AGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQK
LETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELAD
QLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQN
GNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSD
PKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQ
IVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQ
FANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVA
AGERRIGVLASYSAAAAAAAAAAT*
Sequence Length:
975
Sequence Checksum:
d5cc714456569fef5feae250dfe8d722
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027601, derives from mRNA, DCAR_027601. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZNN8 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1402.11 bits (3628), Expect = 0.000e+0
Identity = 753/1013 (74.33%), Postives = 847/1013 (83.61%), Query Frame = 0
Match: A0A5B6ZNN8 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1402.11 bits (3628), Expect = 0.000e+0
Identity = 753/1013 (74.33%), Postives = 847/1013 (83.61%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGSG------VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG---DRRKIGR--EDGGDGSRSLFSVQM-----------EKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGRS-SLDLQNVNGSISFNGASGRVSQQADLVAALSEITLS-NNLLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPGH--LQSISQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAA------------GEGLNN-YMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
+YRSGSAPPTVEGSLNAVGGL GG G VSE+E+RSDP+YISYYY+NVN+NPRLPPPLLSKED RFAQR+QG G S+A+G DRRK+ R +DGG+ +RSLFS+ + E + QG+ EW GDGLIGLPGLGLG RQKSIAE+IQDD +H TS S HPSRP SRNAFD+ ++ SESHFA ++LAS+DA+H+ ANIQG+ S QN+ SS SHTYA+ALG SLSRSTTPDPQL RAPSPRI GGR+ S+D ++VNG SFNGAS + + DLVAALS +TLS N+++DEENH+RSR+Q EIDDHQNLFHLQG+Q KQHPYLN+SE GH L S SQS KGSY V +LNNSSL+++ QV LHKP+++SANSYLKGPSTP NS GSSP Y+N+ SPNSSF NYGL+G+ IN SPSM+GN +G+ PPLFENVAAA+AMG DSR +GG LALGPNL+AAAAELQNLSR GN + + LQVPL+DPLYLQYL+S E+AA GE L+N YMDL G QKAYLG +LSP KSQYGLPYLG SL HG+YGN A+GLGMSYPGSPL G LLPNSP G GSP+ HG+R++RFP G+RN GGVMG WH EAGG LDE+F SSLLDEFK+NK +CFELSEIAGHVVEFSADQYGSRFIQQKLETAT EEKNMVF EI PQAL+LMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVLNLSLQMYGCRVIQKAIEVVDLDQQT+MVAELDGHIMRCVRDQNGNHVIQKCIECIP+DAIQFI+S+FYDQVV LSTHPYGCRVIQRVLEHCSD KTQ++VMDEI++SVCMLAQDQYGNYVVQHVLEHGKPHER+ IINKLIG+IVQMSQQKFASNVVEKCLTFGTP ERQ LV+EMLG+TDENEPLQAMMKDQFANYVVQKVLETCDDQQLEL+LNRIKVHLNALKKYTYGKHIVARVEKLV AGERRIGVL+SYSA
Sbjct: 49 LYRSGSAPPTVEGSLNAVGGLFGHGGGGGADFGGVSEDELRSDPSYISYYYSNVNLNPRLPPPLLSKEDWRFAQRLQGGGGSSALGGNGDRRKMNRGADDGGN-NRSLFSMPLGFNGKNEENGVESRKSQGA-AEWGGDGLIGLPGLGLGSRQKSIAEIIQDDISHATSVSRHPSRPASRNAFDDSIDSSESHFAHLHRELASMDALHSGANIQGMPSVQNIGSSASHTYASALGGSLSRSTTPDPQLAVRAPSPRILPIGGGRAGSMDKRSVNGPNSFNGASPGMGEPTDLVAALSGMTLSTNDMVDEENHSRSRVQHEIDDHQNLFHLQGNQ---KQHPYLNKSESGHFHLHSSSQSAKGSYPNMGKSSVVGMDLNNSSLIANGQVELHKPAVSSANSYLKGPSTPILNSRGSSPPNYQNLDSPNSSFSNYGLSGYAINSASPSMMGNH--NGNFPPLFENVAAASAMGVFGMDSRALGGGLALGPNLMAAAAELQNLSRVGNHSVGSALQVPLMDPLYLQYLRSTEYAAAQVAVLNDPSMDGECLSNSYMDLIGHQKAYLGSLLSPQKSQYGLPYLGKSGSLNHGFYGNPAFGLGMSYPGSPLAGPLLPNSPIGLGSPVIHGERNMRFPPGMRNLAGGVMGSWHSEAGGNLDESFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATIEEKNMVFHEIMPQALTLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLNLSLQMYGCRVIQKAIEVVDLDQQTRMVAELDGHIMRCVRDQNGNHVIQKCIECIPQDAIQFIVSVFYDQVVILSTHPYGCRVIQRVLEHCSDAKTQRIVMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAIINKLIGEIVQMSQQKFASNVVEKCLTFGTPAERQILVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELLLNRIKVHLNALKKYTYGKHIVARVEKLVVAGERRIGVLSSYSA 1054
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BA14 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1387.86 bits (3591), Expect = 0.000e+0
Identity = 746/1035 (72.08%), Postives = 843/1035 (81.45%), Query Frame = 0
Match: A0A5J5BA14 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1387.86 bits (3591), Expect = 0.000e+0
Identity = 746/1035 (72.08%), Postives = 843/1035 (81.45%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGS------GVSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG---DRRKIGR--EDGGDGSRSLFSVQMEKGQQQGSNG----------EWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLS-NNLLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAA-----------GEGLNN-YMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKA------------------------IEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
+YRSGSAPPTVEGSL+AVGGL G GVSEE++RSDPAY+SYYY+NVN+NPRLPPPLLSKED RFAQR+QG+ S+A G DRRK+ R +DGG+ S SLFS+Q+ ++ NG EW GDGLIGLPGLGLG RQKSIAE+IQDD H TS S HPSRP SRNAFD+ ++ SESHF+ +L S+DA+H+ ANIQG+SS N+ SS SHTYA+ALGASLSRSTTPDPQL RAPSPRIP GGR S+D +++NG SFNG S + + ADLVAALS +TLS N+++DEE+H+RSR+Q EIDDHQNLFHLQG+Q KQHPYLN+SE G HL S SQS +GSY GV +LNNSSL+++ V L++P+++SANS LKGP TP NSGGSSP Y+++ SPNSSF NYGL+G+ INP SPSM+GN +G+LPPLFENVAAA+AMG DSR +GG LALGPN++AAAAELQ+LSR GN NA + LQVPL+DPLYLQYL+SNE+AA GE ++N YMDL G+QKAYLG +LSP KSQ+GLPYLG SL HG+YGN A+G+GM YPGSPL G LLPNSP G GSP+ G+R++RFP G+RN G VMG WH EAGG LDE+F SSLLDEFK+NK RCFELSEIAGHVVEFSADQYGSRFIQQKLETAT+EEKNMVF EI QAL+LMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVLNLSLQMYGCRVIQKA IEVVDLDQQTKMVAELDGH+MRCVRDQNGNHVIQKCIECIP+DAIQFI+S+FYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQ +VMDEI+RSVCMLAQDQYGNYVVQHVLEHGKPHERT IINKLIGQIVQMSQQKFASNVVEKCLTFGTP ERQ LV EMLG+TDENEPLQ MMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVL+SYSA
Sbjct: 49 LYRSGSAPPTVEGSLSAVGGLYGHSGGGAIDFGGVSEEDLRSDPAYVSYYYSNVNLNPRLPPPLLSKEDWRFAQRLQGSSGSSASGGIGDRRKVNRGGDDGGNNS-SLFSMQLGFNGKKEENGIELRKPQGVAEWGGDGLIGLPGLGLGSRQKSIAEIIQDDLNHATSLSRHPSRPASRNAFDDSIDSSESHFSHLHHELTSMDALHSGANIQGMSSVPNIGSSASHTYASALGASLSRSTTPDPQLAVRAPSPRIPPVGGGRVGSMDKRSINGPNSFNGVSPGMGEPADLVAALSGMTLSTNDMVDEEHHSRSRVQHEIDDHQNLFHLQGNQ---KQHPYLNKSESGYFHLHSASQSARGSYPNLGKSSGVGMDLNNSSLIANGHVELNRPAVSSANSCLKGPLTPILNSGGSSPPNYQHLDSPNSSFSNYGLSGYAINPASPSMMGNH--NGNLPPLFENVAAASAMGVSGMDSRALGGGLALGPNIMAAAAELQSLSRVGNHNAGSALQVPLMDPLYLQYLRSNEYAAQVAALNDPSMDGECISNSYMDLIGLQKAYLGSLLSPQKSQFGLPYLGKSGSLNHGFYGNPAFGIGMPYPGSPLAGPLLPNSPIGSGSPVGLGERNMRFPPGMRNLAGAVMGSWHSEAGGNLDESFPSSLLDEFKSNKTRCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFHEIMHQALTLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLNLSLQMYGCRVIQKAKQHYQICTEVVWKILEAAGFRKMAIEVVDLDQQTKMVAELDGHVMRCVRDQNGNHVIQKCIECIPQDAIQFIVSVFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQHLVMDEILRSVCMLAQDQYGNYVVQHVLEHGKPHERTAIINKLIGQIVQMSQQKFASNVVEKCLTFGTPAERQILVTEMLGSTDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLSSYSA 1077
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZMA7 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303} (Fragment))
HSP 1 Score: 1384.39 bits (3582), Expect = 0.000e+0
Identity = 746/1014 (73.57%), Postives = 844/1014 (83.23%), Query Frame = 0
Match: A0A5B6ZMA7 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303} (Fragment))
HSP 1 Score: 1384.39 bits (3582), Expect = 0.000e+0
Identity = 746/1014 (73.57%), Postives = 844/1014 (83.23%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGSG------VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG---DRRKIGR--EDGGDGSRSLFSVQM-----------EKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGRS-SLDLQNVNGSISFNGASGRVSQQADLVAALSEITLS-NNLLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGEGL-------------NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFG-GGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
+YRSGSAPPTVEGSLNAVGGL GG G VSE+E+RSDP+YISYYY+NVN+NPRLPPPLLSKED RFAQR+QG G S+A+G DRRK+ R +DGG+ +RSLFS+ + E + QG+ EW GDGLIGLPGLGLG RQKSIAE+IQDD +H TS S HPSRP S NAFD+ V+ SESHF ++L S+DA+ + ANIQG+ S QN+ +S SHTYA+ALGASLSRSTTPDPQL+ARAPSPRI GGR+ S+D ++VNG SFNGAS + + DLVAALS +TLS N+++DEENH+RSR+Q EIDDHQNLFHLQGDQ KQHP+L+ SE G HL S SQS K SY GV +LNNS L++D QV LHKP+++SANSYLKGPSTPT NS GSSP Y+N+ SPN SF NYGL+G+ INP SP M+GN SG+LP FENVAAA+AMG DSR +GG LAL PNL+AAAAELQNLSR GN ++ + +QVPL+DPLYLQYL+S E+AA + N+YMDL G+QKAYLG + SP KSQYGLPYLG SL HG+YGN A+GLG+SYPGSPL L+PNSP G GSP+RHG+R++RFPSG+RN GGVMG WH EAGG LDE+F SSLLDEFK+NK +CFELSEIAGHVVEFSADQYGSRFIQQKLETAT EEKNMVF EI PQAL+LMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVLNLSLQMYGCRVIQKAIEVVDLDQQT+MVAELDGHIMRCVRDQNGNHVIQKCIECIP+DAIQFI+S+FYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQ +VMDEI+RS+CMLAQDQYGNYVVQHVLEHGKPHER+ IINKLIG+IVQMSQQKFASNVVEKCLTFGTP ERQ LV+EMLG+TDENEPLQAMMKDQFANYVVQKVLETCDDQQLEL+LNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVL+SYSA
Sbjct: 11 LYRSGSAPPTVEGSLNAVGGLFGHGGGGGADFGGVSEDELRSDPSYISYYYSNVNLNPRLPPPLLSKEDWRFAQRLQGGGGSSALGGNGDRRKMNRGADDGGN-NRSLFSMPLGFNGKNEENGVESRKSQGA-AEWGGDGLIGLPGLGLGSRQKSIAEIIQDDISHATSVSRHPSRPASHNAFDDTVDSSESHFTHLHRELESMDALRSGANIQGMPSVQNIGASASHTYASALGASLSRSTTPDPQLVARAPSPRILPIGGGRAGSMDKRSVNGPNSFNGASPGMGEPTDLVAALSGMTLSTNDMVDEENHSRSRVQHEIDDHQNLFHLQGDQ---KQHPFLHNSESGQLHLHSASQSAKRSYPNMGKSSGVGMDLNNSFLIADGQVELHKPAVSSANSYLKGPSTPTLNSRGSSPPNYQNMDSPNLSFSNYGLSGYAINPASPPMMGNH--SGNLPLFFENVAAASAMGVSGMDSRALGGGLALRPNLMAAAAELQNLSRVGNHSSGSSIQVPLMDPLYLQYLRSTEYAAAQAAALNDPSMDRECIGNSYMDLLGLQKAYLGALPSPQKSQYGLPYLGKSDSLNHGFYGNPAFGLGISYPGSPLVNPLIPNSPIGSGSPVRHGERNMRFPSGMRNLAAGGVMGSWHSEAGGNLDESFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATIEEKNMVFHEIMPQALTLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLNLSLQMYGCRVIQKAIEVVDLDQQTRMVAELDGHIMRCVRDQNGNHVIQKCIECIPQDAIQFIVSVFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQHIVMDEILRSICMLAQDQYGNYVVQHVLEHGKPHERSAIINKLIGEIVQMSQQKFASNVVEKCLTFGTPAERQILVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELLLNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLSSYSA 1017
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HNV5 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1378.62 bits (3567), Expect = 0.000e+0
Identity = 721/1015 (71.03%), Postives = 821/1015 (80.89%), Query Frame = 0
Match: F6HNV5 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1378.62 bits (3567), Expect = 0.000e+0
Identity = 721/1015 (71.03%), Postives = 821/1015 (80.89%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGSG-----VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG----------DRRKIGREDGGDGSRSLFSVQMEKGQQQGSNG---------EWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGEGL-------------NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
+YRSGSAPPTVEGSL+AVGGL GGG G SEEE+R+DPAY++YYY+NVN+NPRLPPP LSKED RFAQR+ G G+ DRRK+GR G+GS SLF +Q Q+ NG EW GDGLIGLPGLGLG RQKS+AE+IQDD H TS S HPSRP SRNAFD+ VE SE+ F+ +LAS+DA+ + IQ +S+ QNV SS SHTYA+ALGASLSRSTTPDPQL+ARAPSPRIP+ GGR SS+D ++ NGS SFN + + ADLVAALS + LS N ++D ENH+RS+IQ EIDDH+NLF+LQGDQ + K H YLN+SE G HL S+ QS KGSY G GV +LN S+LL++ QV L K S +SANS+LKGPSTPT SGGS PS Y+NV + NSSF NYGL+G+ NP SPSM+G+Q SG++PPLFENVAAA+AMG DSR +GG L LGPNL+AAA+ELQNL R GN N LQVP+VDPLYLQYL+S E+AA +G+ ++YMDL G+QKAYLG +L+ KSQYG+PYLG SS+ HGYYGN +GLGMSYPGSPL G LLPNSP G GSP+RH +R++RFPSG+RN GGVMG WH EAGG LD+ F SSLLDEFK+NK +CFELSEI+GHVVEFSADQYGSRFIQQKLETAT+EEK+MVF EI PQALSLMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVL LSLQMYGCRVIQKAIEVVDLDQQTKMV ELDG++MRCVRDQNGNHVIQKCIECIP+D+IQFIIS FYDQVVTLSTHPYGCRVIQRVLEHC DPKTQ+++MDEI++SV MLAQDQYGNYVVQHVLEHGKPHER+ IIN+L GQIVQMSQQKFASNVVEKCLTFG P ERQ LV+EMLG+TDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGV +S A
Sbjct: 43 IYRSGSAPPTVEGSLSAVGGLFGGGGDGSDTGFASEEELRADPAYVNYYYSNVNLNPRLPPPRLSKEDWRFAQRLHGGGAGGGGSGSSSSVGGIGDRRKVGRGGDGNGS-SLFLMQPGFNGQKDENGAESRKAQGVEWGGDGLIGLPGLGLGSRQKSLAEIIQDDIGHATSVSRHPSRPASRNAFDDNVETSEAQFSHLHHELASMDALRSGTKIQAISAVQNVASSASHTYASALGASLSRSTTPDPQLVARAPSPRIPTVGGGRTSSMDKRSGNGSNSFNSVPPGIGESADLVAALSGLNLSTNGMVDGENHSRSQIQHEIDDHKNLFNLQGDQNHIKHHSYLNKSESGNFHLHSVPQSAKGSYSNMGKGSGVGMDLNKSALLAEGQVELQKSSASSANSFLKGPSTPTLTSGGSLPSHYQNVDNVNSSFSNYGLSGYTFNPASPSMMGSQHGSGNMPPLFENVAAASAMGVTGMDSRALGGGLNLGPNLMAAASELQNL-RVGNHTTGNALQVPVVDPLYLQYLRSAEYAATQGVALNDPTMDREYMGSSYMDLLGLQKAYLGALLTSQKSQYGVPYLGKSSSMNHGYYGNPQFGLGMSYPGSPLAGPLLPNSPVGSGSPVRHNERNMRFPSGMRNLAGGVMGAWHSEAGGNLDDNFVSSLLDEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKDMVFHEIMPQALSLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVMELDGNVMRCVRDQNGNHVIQKCIECIPQDSIQFIISTFYDQVVTLSTHPYGCRVIQRVLEHCHDPKTQRIMMDEILQSVRMLAQDQYGNYVVQHVLEHGKPHERSSIINELAGQIVQMSQQKFASNVVEKCLTFGAPSERQILVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVQSSLPA 1055
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DFK4 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1363.21 bits (3527), Expect = 0.000e+0
Identity = 744/1008 (73.81%), Postives = 823/1008 (81.65%), Query Frame = 0
Match: A0A4S4DFK4 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1363.21 bits (3527), Expect = 0.000e+0
Identity = 744/1008 (73.81%), Postives = 823/1008 (81.65%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGSGV--------SEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG----DRRKIGREDGGDGSRSLFSVQ-----------MEKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGG-RSSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSYG-----YGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAA-TAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAG------------EGL-NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHG-YYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI 956
+YRSGSAPPTVEGSLNAVGGL GGG G SEEE+RSDPAYISYYY+NVN+NPRLPPPLLSKED RFAQRMQGA +S+ +G R+ G +RSLFS+Q +E + QG+ EW GDGLIGLPGLGLG RQKSIAE+IQDD +H TS S HPSRP SRNAFD+ VE SESHFA +LAS+DA+ + ANIQG+ + QN+ + SHTYA+ALGASLSRSTTPDPQL+AR IP GG SS+D +N+NG SFNG S +S+QADLVAALS +TLS N L+DEENH+RS IQQEIDDHQNLFHLQGDQ + KQHPYLN SE G HL S QS K SY G+ ELNNSSL++D QV LHKP ++SA+SYLKGPSTP NSGGSSPS Y N+ SPNSSF NYGLNG+++NPGSPSM+GNQ A+ LPPLFENVAAA +AMG DSR +GG LALGPN +AAAAELQNLSR GN +A + LQ+ L+DPLYLQYL+S E+AA EG+ N+YMDL G+QKAYLG +LS KSQYGL Y+G SL H YYGN +GLGMSYPGSPL SLLPNSP G GSP+RH +R++RFPS +RN GGVMG WHPEAGG LDE F SSLLDEFK+NK +CFELSEIAGHVVEFSADQYGSRFIQQKLETAT+EEKNMVF EI PQALSLMTDVFGNYVIQKFFEHGTA+QIRELADQL+GHVL LSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIP++AIQFIIS+FYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQ+VMDEI++SVC LAQDQYGNYVVQHVLEHGKPHER+ II KLIGQIVQMSQQKFASNVVEKCLTFGT ERQ LV EMLGTTDENEPLQ MMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAG I
Sbjct: 49 LYRSGSAPPTVEGSLNAVGGLFVGGGGGGGGVDFGGLSEEELRSDPAYISYYYSNVNLNPRLPPPLLSKEDWRFAQRMQGASASSGLGGIGDRRKVGRGGGDGGNNRSLFSMQPGFNGKKEENGIESRKPQGA-AEWGGDGLIGLPGLGLGTRQKSIAEVIQDDISHATSISRHPSRPASRNAFDDNVESSESHFAHLHHELASIDALRSGANIQGMPAVQNIGVAASHTYASALGASLSRSTTPDPQLVARGA---IPLVMGGMTSSIDKRNINGPNSFNGVSTGMSEQADLVAALSGMTLSTNGLIDEENHSRSLIQQEIDDHQNLFHLQGDQNHIKQHPYLNNSESGKFHLHSALQSAKASYSNVGKTSGIGMELNNSSLIADGQVELHKP-VSSASSYLKGPSTPILNSGGSSPSNYHNLDSPNSSFSNYGLNGYSVNPGSPSMMGNQLAN--LPPLFENVAAAASAMGVSGMDSRALGGGLALGPNFMAAAAELQNLSRVGNHSAGSALQMQLMDPLYLQYLRSTEYAAAQAAALNDPTIDREGIGNSYMDLIGLQKAYLGTLLSTQKSQYGLQYVGKSGSLNHNNYYGNPQFGLGMSYPGSPLASSLLPNSPIGSGSPVRHSERNIRFPSVMRNVAGGVMGSWHPEAGGTLDEHFVSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFHEIMPQALSLMTDVFGNYVIQKFFEHGTASQIRELADQLSGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPQEAIQFIISVFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQIVMDEILQSVCTLAQDQYGNYVVQHVLEHGKPHERSAIITKLIGQIVQMSQQKFASNVVEKCLTFGTAAERQHLVTEMLGTTDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGGMHI 1049
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I5J6 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1360.13 bits (3519), Expect = 0.000e+0
Identity = 750/1060 (70.75%), Postives = 833/1060 (78.58%), Query Frame = 0
Match: A0A7J7I5J6 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1360.13 bits (3519), Expect = 0.000e+0
Identity = 750/1060 (70.75%), Postives = 833/1060 (78.58%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSGGGSGV---------SEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG----DRRKIGREDGGDGSRSLFSVQ-----------MEKGQQQGSNGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGG-RSSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSYG-----YGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAA-TAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAG------------EGL-NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHG-YYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQ-------------------------------------------HVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
+YRSGSAPPTVEGSLNAVGGL GGG G SEEE+RSDPAYISYYY+NVN+NPRLPPPLLSKED RFAQRMQGA +S+ +G R+ G +RSLFS+Q +E + QG+ EW GDGLIGLPGLGLG RQKSIAE+IQDD +H TS S HPSRP SRNAFD+ VE SESHFA +LAS+DA+ + ANIQG+ + QN+ + SHTYA+ALGASLSRSTTPDPQL+AR IP GG SS+D +N+NG SFNG S +S+QADLVAALS +TLS N L+DEENH+RS IQQEIDDHQNLFHLQGDQ + KQHPYLN SE G HL S QS K SY G+ +LN+SSL++D QV LHKP ++SA+SYLKGPSTP NSGGSSPS Y N+ SPNSSF NYGLNG+++NPGSPSM+GNQ A+ LPPLFENVAAA +AMG DSR +GG LALGPN +AAAAELQNLSR GN +A + LQ+ L+DPLYLQYL+S E+AA EG+ N+YMDL G+QKAYLG +LS KSQYGL Y+G SL H YYGN +GLGMSYPGSPL SLLPNSP G GSP+RH +R++RFPS +RN GGVMG WHPEAGG LDE F SSLLDEFK+NK +CFELSEIAGHVVEFSADQYGSRFIQQKLETAT+EEKNMVF EI PQALSLMTDVFGNYVIQKFFEHGTA+QIRELADQL+GHVL LSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIP++AIQFIIS+FYDQV+TLSTHPYGCRVIQRVLEHCSDPKTQQ+VMDEI++SVC LAQDQYGNYVVQ HVLEHGKPHER+ II KLIGQIVQMSQQKFASNVVEKCLTFGT ERQ LV EMLGTTDENEPLQ MMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIG L+SYSA
Sbjct: 49 LYRSGSAPPTVEGSLNAVGGLFVGGGGGGGGGVDFGGLSEEELRSDPAYISYYYSNVNLNPRLPPPLLSKEDWRFAQRMQGASASSGLGGIGDRRKVGRGGGDGGNNRSLFSMQPGFNGKKEENGIESRKPQGA-AEWGGDGLIGLPGLGLGTRQKSIAEVIQDDISHATSISRHPSRPASRNAFDDNVESSESHFAHLHHELASIDALRSGANIQGMPAVQNIGVAASHTYASALGASLSRSTTPDPQLVARGA---IPLVMGGMTSSIDKRNINGPNSFNGVSTGMSEQADLVAALSGMTLSTNGLIDEENHSRSLIQQEIDDHQNLFHLQGDQNHIKQHPYLNNSESGKFHLHSALQSAKASYSNVGKTSGIGMDLNSSSLIADGQVELHKP-VSSASSYLKGPSTPILNSGGSSPSNYHNLDSPNSSFSNYGLNGYSVNPGSPSMMGNQLAN--LPPLFENVAAAASAMGVSGMDSRALGGGLALGPNFMAAAAELQNLSRVGNHSAGSALQMQLMDPLYLQYLRSTEYAAAQAAALNDPTIDREGIGNSYMDLIGLQKAYLGTLLSTQKSQYGLQYVGKSGSLNHNNYYGNPQFGLGMSYPGSPLASSLLPNSPIGSGSPVRHSERNIRFPSVMRNVAGGVMGSWHPEAGGTLDEHFVSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFHEIMPQALSLMTDVFGNYVIQKFFEHGTASQIRELADQLSGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPQEAIQFIISVFYDQVLTLSTHPYGCRVIQRVLEHCSDPKTQQIVMDEILQSVCTLAQDQYGNYVVQVCFISCKLLTNYTCFCRFKLLCMLEQWVAFSKLGGSQFESLALHVLEHGKPHERSAIITKLIGQIVQMSQQKFASNVVEKCLTFGTAAERQHLVTEMLGTTDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGALSSYSA 1101
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RRD0 ((Pumilio 2 like {ECO:0000313|EMBL:PSS32574.1}))
HSP 1 Score: 1356.27 bits (3509), Expect = 0.000e+0
Identity = 728/1011 (72.01%), Postives = 824/1011 (81.50%), Query Frame = 0
Match: A0A2R6RRD0 ((Pumilio 2 like {ECO:0000313|EMBL:PSS32574.1}))
HSP 1 Score: 1356.27 bits (3509), Expect = 0.000e+0
Identity = 728/1011 (72.01%), Postives = 824/1011 (81.50%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLL-------SGGGSGVSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG---DRRKIGR--EDGGDGSRSLFSVQMEKGQQQGS-----NGEWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPG--HLQSISQSGKGSYGY-----GVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAG------------EGLNN-YMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLG---MSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSA 964
MYRSGSAPPTVEGSL+AVGGL + GV EEE+RSDPAY+SYYYANVN+NPRLPPPLLSKED R AQR+QG G +G DRRK+ R +DGG +RSLFS+ E ++GS GEW GDGLIGL GLGLG R+KSIAE+IQDD + TS S HPSRP SRNAFD+GVE SESHFA +L S+DA+ + ANIQG+ + QN+ +S SHTYA+AL ASLSRSTTPDPQL+ARAPSPRIP GR SS+D +N NGS SFNG S +S+ ADLV ALS ++LS N ++DE+N RS IQQEID Q+ FHL+ DQ + KQH YLNRSE G HL S SQSGK Y GV +LNNS L +D QV+LHKP+++SANSYLKGPSTP NSGGSSPS Y N SPNSSF NYG +G+ +NP SPSM+GNQ A+ PPLFENV A+AMG DSR +GG LALGPN++A AELQN SRAGN NA + LQ+PL+DPLYLQYL++ E+AA EG+ N YMDL G+QKAYLG +LSP KSQYGLPYLG SL H YYGN ++GLG MSY GSPL G LLPNS G GSP+RHG+R++RF S +RN GGVMG WH E GG LD FASSLLDEFK+NK RCFELSEI+GHVVEFSADQYGSRFIQQKLETAT+EEK+MVF EI PQALSLMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVL LSLQMYGCRVIQKAIEVVDLDQQT+MVAELDG++MRCVRDQNGNHVIQKCIECIP++AI+FIIS+FYDQVVTLSTHPYGCRVIQRVLEHC+DPKTQ++VMDE+++SV MLAQDQYGNYVVQHVLEHGKPHER+ II KLIGQIVQMSQQKFASNV+EKCL+FGTP ERQ+LV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIG+++SYSA
Sbjct: 43 MYRSGSAPPTVEGSLSAVGGLFGGGSGGGTADFGGVPEEEMRSDPAYVSYYYANVNLNPRLPPPLLSKEDWRSAQRLQGTGGGLGLGGIGDRRKVSRGGDDGGK-NRSLFSMGPEFNGKKGSGIESSKGEWGGDGLIGLSGLGLGSRKKSIAEIIQDDISQATSVSRHPSRPASRNAFDDGVESSESHFAHLHHELTSMDALRSGANIQGIPAAQNIGTSTSHTYASALAASLSRSTTPDPQLVARAPSPRIPPVGAGRASSMDKRNGNGSNSFNGVSPSMSEPADLVTALSGMSLSTNGVVDEDNLTRSVIQQEIDYPQDPFHLRADQNHIKQHSYLNRSESGQFHLHSASQSGKALYSQAGKSGGVEVDLNNSFLTADGQVSLHKPAVSSANSYLKGPSTPILNSGGSSPSNYHNFDSPNSSFSNYGFSGYGVNPASPSMIGNQMAN--FPPLFENVVNASAMGVSGLDSRALGGDLALGPNVMAGGAELQNFSRAGNHNAGSALQMPLMDPLYLQYLRTTEYAAAQAAAFSDPTIDREGIGNAYMDLIGLQKAYLGSLLSPQKSQYGLPYLGKSGSLNHNYYGNPSFGLGINGMSYTGSPLVGPLLPNSHIGSGSPVRHGERNMRFSSSLRNLAGGVMGSWHSETGGNLDGHFASSLLDEFKSNKTRCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKSMVFHEIMPQALSLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVDLDQQTRMVAELDGNVMRCVRDQNGNHVIQKCIECIPQEAIEFIISVFYDQVVTLSTHPYGCRVIQRVLEHCNDPKTQRIVMDEVLQSVIMLAQDQYGNYVVQHVLEHGKPHERSAIIIKLIGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGIISSYSA 1050
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QEY9 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1352.42 bits (3499), Expect = 0.000e+0
Identity = 708/1011 (70.03%), Postives = 816/1011 (80.71%), Query Frame = 0
Match: A0A5N6QEY9 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1352.42 bits (3499), Expect = 0.000e+0
Identity = 708/1011 (70.03%), Postives = 816/1011 (80.71%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSG---------GGSG-VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIGDRRKIGREDGGDGS------RSLFSVQMEKGQQQGSNG-EWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPGHLQSI--SQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGEGL-------------NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSAAAA 967
MYRSGSAPPTVEGSL+AVGGL GG G VSE+E+R+DPAY+SYYY+NVN+NPRLPPPLLSKE+ RFAQR+ G G+ IGDRRK+ R G+ +SLFSVQ ++ G EW GDGLIGL GLGLG RQKSIAE+IQDD H +S S HPSRP SRNAFDN VE SES FA +L S+D +H+ + QG+S+ Q++ +S SHTYA+ALGASLSRS+TPDPQL+ARAPSPRIP GGR SS+D ++V GS SFNG S +S+ ADLVAALS + LS N L D+++H RS+++ + DDH +LF+LQG+Q + KQH YLN+SE GH S QS KGSY GV +LNNS L +D ++ LHKP+++SANSYLKG STPT N GSSPS Y+N+ S N + NYGL+G+ INP SPSM+G+Q S S PP FEN AAA+A G DSR GG L+LGPN++AA A+LQNLSR N A N LQ+P++DPLYLQYL+SNE+AA + N+Y+DL +QKAYLG +LSP KSQ G+PYLG +SL HGYYGN A GLGMSYPGSPLGG LLPNSP G GSP+RHG+RS+RFP G+RN GGVMG WH +AG LDETFAS+LLDEFK+NK +CFELSEI GHVVEFSADQYGSRFIQQKLETAT+EEKNMVFDEI PQALSLMTDVFGNYVIQKFFEHGTA+Q+RELADQLNGHVL LSLQMYGCRVIQKAIEVVDLDQQTKMV ELDGHIMRCVRDQNGNHVIQKCIEC+PEDAIQFI++ FYDQVVTLS+HPYGCRVIQR+LEHC DPKTQQ++MDEI+ SVCMLAQDQYGNYVVQHVLEHGKPHER+ II KL GQIVQMSQQKFASNV+EKCL+FGTP ERQ+LV+EMLG+TDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI ++ + A+ A
Sbjct: 43 MYRSGSAPPTVEGSLSAVGGLFDASALMGFTKNGGKGLVSEDELRADPAYVSYYYSNVNLNPRLPPPLLSKEERRFAQRLSG-GAVGGIGDRRKVSRGGEEGGNGNGNGNQSLFSVQPGYKEESGKGAAEWGGDGLIGLTGLGLGSRQKSIAEIIQDDI-HVSSVSRHPSRPASRNAFDNSVETSESQFAHLPHELTSMDTLHSDGHKQGISANQSIGASASHTYASALGASLSRSSTPDPQLVARAPSPRIPLVGGGRVSSMDKRSVGGSNSFNGISPSLSESADLVAALSGMNLSTNGLEDKDSHPRSQVRHQTDDHHDLFNLQGEQNHMKQHSYLNKSESGHFHSHYGPQSAKGSYPNIGNSIGVGMDLNNSLLKADEKIELHKPAVSSANSYLKGQSTPTFNGRGSSPSHYQNLDSMNPALQNYGLSGYAINPSSPSMMGSQLGSASFPPFFENAAAASAFGVSGMDSRVPGGGLSLGPNMLAAGADLQNLSRMRNHTAGNNLQLPMMDPLYLQYLRSNEYAAAQVTSLNDTSMDRDCMGNSYLDLLELQKAYLGVLLSPQKSQLGVPYLGKSASLNHGYYGNPALGLGMSYPGSPLGGPLLPNSPVGSGSPVRHGERSMRFP-GMRNLAGGVMGAWHSDAGSNLDETFASTLLDEFKSNKTKCFELSEIGGHVVEFSADQYGSRFIQQKLETATTEEKNMVFDEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLNGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVTTFYDQVVTLSSHPYGCRVIQRILEHCDDPKTQQIMMDEILLSVCMLAQDQYGNYVVQHVLEHGKPHERSAIITKLTGQIVQMSQQKFASNVIEKCLSFGTPAERQALVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIMNPHPASMA 1050
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZDC6 ((pumilio homolog 1-like isoform X1 {ECO:0000313|RefSeq:XP_015876848.1}))
HSP 1 Score: 1346.26 bits (3483), Expect = 0.000e+0
Identity = 708/1014 (69.82%), Postives = 810/1014 (79.88%), Query Frame = 0
Match: A0A6P3ZDC6 ((pumilio homolog 1-like isoform X1 {ECO:0000313|RefSeq:XP_015876848.1}))
HSP 1 Score: 1346.26 bits (3483), Expect = 0.000e+0
Identity = 708/1014 (69.82%), Postives = 810/1014 (79.88%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGL-----LSG----GGSG-VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAAIG---------DRRKIGRE--DGGDGSRSLFSVQ-----MEKGQQQGSNG--EWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPGH--LQSISQSGKGSY-----GYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG--DSRRMGGLALG-PNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAG--------EGL-NNYMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSAA 965
+YRSGSAPPTVEGSLNAVGGL LSG GG G V+EEE+RSDP Y++YYY+NVN+NPRLPPPLLSKED RFAQR+QG G G DRRK+G+ +GG+ +RSLFSVQ E+ + + G EW DGLIGL GRQKSIAE+IQDD +H S S HPSRP SRNAF++G+E SE+ FA DL S+DA+ +S N QG+ + Q++ +S SHTYA+ALGASLSRSTTPDPQL+ARAPSPRIP GGR +S++ ++V G SFNG S + + DLVAALS + LS N ++DEEN ARS+IQ EID+ NLF+LQGDQ + ++ YLN+SE GH + S QS KGSY GV ELNNSSL+ D QV LHK ++SANSYLKGPSTPT N GSS + Y+NV + NSSF +YGL G+ ++P SPS++G+ SGSLPPLFEN AAA+ MG DS GG PN++A AAELQN+ R GN A N LQVPL+DPLY+QYL+SNE+AA EG+ N YMDL +QKAYLG +LSP KSQ+G+PY+G S+ HGYYGN A+GLGMSYPGSPLGG LLPN GSP+RH +R+LRF SG+RN GG+MG WH EAGG LDE+F SSLLDEFK+NK +CFELSEIAGHVVEFSADQYGSRFIQQKLETAT+EEKNMVF+EI PQALSLMTDVFGNYVIQKFFEHGTA+QIRELADQL GHVL LSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIEC+PEDAIQFI+S FYDQVVTLSTHPYGCRVIQRVLEHC DPKTQ ++MDEI+ SVCMLAQDQYGNYVVQHVLEHGKPHERT II KL GQIVQMSQQKFASNV+EKCLTFGTP ERQ+LV+EMLG+TDENEPLQ MMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI +L ++ A
Sbjct: 50 LYRSGSAPPTVEGSLNAVGGLFDASMLSGFKKDGGKGFVTEEELRSDPVYVNYYYSNVNLNPRLPPPLLSKEDWRFAQRLQGGGGGGGGGGSSAVGGIGDRRKVGKSSGEGGNANRSLFSVQPGVTGKEETEVESRKGAAEWGVDGLIGL-PGLGLGRQKSIAEIIQDDMSHAKSVSRHPSRPASRNAFEDGLESSEAQFAHLHHDLGSIDALRSSGNKQGMPAAQSIGASASHTYASALGASLSRSTTPDPQLVARAPSPRIPPVGGGRATSMERRSVGGQNSFNGVSPNIGESEDLVAALSGMNLSTNGMIDEENQARSQIQNEIDNSHNLFNLQGDQNHINKNSYLNKSESGHYHMHSFPQSAKGSYQNMGKSSGVGMELNNSSLMFDEQVELHKSVVSSANSYLKGPSTPTLNGRGSSTAHYQNVENTNSSFSSYGLGGYGVSPPSPSVMGSPLGSGSLPPLFENAAAASVMGGVDSGAFGGGLALGPNMLAVAAELQNMGRVGNHGAGNALQVPLMDPLYMQYLRSNEYAASLNDPTMEREGMGNTYMDLFELQKAYLGTLLSPQKSQFGVPYIGKSGSMNHGYYGNPAFGLGMSYPGSPLGGPLLPNLSVASGSPVRHSERNLRFSSGMRNLSGGLMGGWHSEAGGNLDESFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFNEIMPQALSLMTDVFGNYVIQKFFEHGTASQIRELADQLTGHVLTLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVSTFYDQVVTLSTHPYGCRVIQRVLEHCHDPKTQHIMMDEILLSVCMLAQDQYGNYVVQHVLEHGKPHERTAIIKKLTGQIVQMSQQKFASNVIEKCLTFGTPIERQTLVNEMLGSTDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISILTPHATA 1062
BLAST of DCAR_027601 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IFN2 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1345.1 bits (3480), Expect = 0.000e+0
Identity = 715/1021 (70.03%), Postives = 820/1021 (80.31%), Query Frame = 0
Match: A0A2N9IFN2 (PUM-HD domain-containing protein {ECO:0000259|PROSITE:PS50303})
HSP 1 Score: 1345.1 bits (3480), Expect = 0.000e+0
Identity = 715/1021 (70.03%), Postives = 820/1021 (80.31%), Query Frame = 0
Query: 1 MYRSGSAPPTVEGSLNAVGGLLSG---------GGSG-VSEEEIRSDPAYISYYYANVNMNPRLPPPLLSKEDGRFAQRMQGAGSSAA-----IGDRRKIGREDGGDGS------RSLFSVQMEKGQQQGSNG----EWSGDGLIGLPGLGLGGRQKSIAELIQDDTTHQTSASGHPSRPTSRNAFDNGVEPSESHFAQFKQDLASLDAVHASANIQGLSSTQNVNSSVSHTYAAALGASLSRSTTPDPQLLARAPSPRIPSARGGR-SSLDLQNVNGSISFNGASGRVSQQADLVAALSEITLSNN-LLDEENHARSRIQQEIDDHQNLFHLQGDQYNNKQHPYLNRSEPGHLQ--SISQSGKG----SYGYGVRAELNNSSLLSDVQVNLHKPSLASANSYLKGPSTPTHNSGGSSPSQYRNVGSPNSSFLNYGLNGHNINPGSPSMLGNQFASGSLPPLFENVAAATAMG----DSRRMGG-LALGPNLIAAAAELQNLSRAGNQNALNGLQVPLVDPLYLQYLQSNEFAAGE--GLNN-----------YMDLAGIQKAYLGGVLSPPKSQYGLPYLGSPSSLTHGYYGNQAYGLGMSYPGSPLGGSLLPNSPFGPGSPIRHGDRSLRFPSGIRNFGGGVMGPWHPEAGGMLDETFASSLLDEFKNNKARCFELSEIAGHVVEFSADQYGSRFIQQKLETATSEEKNMVFDEITPQALSLMTDVFGNYVIQKFFEHGTATQIRELADQLNGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVAELDGHIMRCVRDQNGNHVIQKCIECIPEDAIQFIISIFYDQVVTLSTHPYGCRVIQRVLEHCSDPKTQQVVMDEIMRSVCMLAQDQYGNYVVQHVLEHGKPHERTCIINKLIGQIVQMSQQKFASNVVEKCLTFGTPEERQSLVDEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVLASYSAAAAAAA 970
MYRSGSAPPTVEGSL+AVGGL GG+G V+E+E+R+DP+Y++YYY+NVN+NPRLPPPLLSKE+ RFAQR+ G+G +A IGDRRK+ R GG+ S RSLFSVQ G ++ NG EW DGLIGLPGLGLG RQKSIAE+IQ+D H +S S HPSRP+SRNAFD GVE SES FA +LAS++A+H+ ++Q +S+TQN+ SS SHTYA+ALGASLSRSTTPDPQL+ARAPSPRIP GGR SS+D ++ +GS SFNG S +S DLVAALS + LS N L D+E+H RS+++ EIDD+ +FHLQGD + KQH YLN+SEPGHL S QS KG G R +LNNS L SD +V LHK +++SANSYLKG STPT N G+SPS Y+N+ N++F NYGL+G+ INP SPSM+ +Q SG LPPLFEN AAA+A+G DSR +GG L+LGPNL+AA A+LQNLSR N A LQVPL+DP Y QYL+SNE+AA + LN+ Y DL +QKAYLG +LSP KSQYG+PYLG +SL HGYYGN A GL MSYPGSPL G LLPNSP G GSP+RHG+R++ F SG+RN GGVMG WH EAGG LDETFA +LLDEFK+NK +CFELSEIA HVVEFSADQYGSRFIQQKLETATSEEKNMVF+EI PQALSLMTDVFGNYVIQKFFEHGT +QIR+LADQL GHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMV ELDGHIMRCVRDQNGNHVIQKCIEC+PEDAIQFI+S FYDQVVTLSTHPYGCRVIQR+LEHC D KTQQ++MDEI+ SVCMLAQDQYGNYVVQHVLEHGKPHER+ II KL GQIVQMSQQKFASNV+EKCL+FGTP ERQ+LV EMLG TDENEPLQ MMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI ++ ++AA+ A A
Sbjct: 43 MYRSGSAPPTVEGSLSAVGGLFDAAAVMGFKKNGGTGFVNEDELRADPSYVNYYYSNVNLNPRLPPPLLSKEERRFAQRLSGSGGAAGSVVGGIGDRRKVSRVSGGEESGNGSEHRSLFSVQPGFGGKE-ENGKGAAEWGVDGLIGLPGLGLGSRQKSIAEIIQEDI-HASSVSRHPSRPSSRNAFDIGVETSESQFAHLHHELASMEALHSGGHMQSMSATQNIGSSASHTYASALGASLSRSTTPDPQLVARAPSPRIPPVGGGRTSSMDKRSASGSNSFNGVSPGLSDSTDLVAALSGMNLSTNGLEDKESHLRSQLRHEIDDNHEIFHLQGDLNHIKQHSYLNKSEPGHLHLHSGPQSTKGYPNIGNSSGARMDLNNSFLKSDEKVELHKSAVSSANSYLKGTSTPTLNGRGTSPSHYQNMDGMNTNFQNYGLSGYAINPSSPSMMASQLGSGGLPPLFENAAAASALGVSGMDSRVLGGGLSLGPNLLAAGADLQNLSRVRNHTAGIALQVPLMDPSYPQYLRSNEYAAAQVAALNDAALDRECMGSSYFDLIELQKAYLGALLSPQKSQYGVPYLGKSASLNHGYYGNPALGLAMSYPGSPLAGPLLPNSPVGSGSPVRHGERNMHF-SGMRNLAGGVMGAWHSEAGGNLDETFACTLLDEFKSNKTKCFELSEIASHVVEFSADQYGSRFIQQKLETATSEEKNMVFNEIMPQALSLMTDVFGNYVIQKFFEHGTPSQIRDLADQLTGHVLNLSLQMYGCRVIQKAIEVVDLDQQTKMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVSTFYDQVVTLSTHPYGCRVIQRILEHCHDAKTQQIMMDEILLSVCMLAQDQYGNYVVQHVLEHGKPHERSAIITKLTGQIVQMSQQKFASNVIEKCLSFGTPVERQALVTEMLGATDENEPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISIMNPHAAASMAMA 1060
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZNN8 | E-Value: 0.000e+0, PID: 74.33 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A5J5BA14 | E-Value: 0.000e+0, PID: 72.08 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A5B6ZMA7 | E-Value: 0.000e+0, PID: 73.57 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| F6HNV5 | E-Value: 0.000e+0, PID: 71.03 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A4S4DFK4 | E-Value: 0.000e+0, PID: 73.81 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A7J7I5J6 | E-Value: 0.000e+0, PID: 70.75 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A2R6RRD0 | E-Value: 0.000e+0, PID: 72.01 | (Pumilio 2 like {ECO:0000313|EMBL:PSS32574.1})[more] |
| A0A5N6QEY9 | E-Value: 0.000e+0, PID: 70.03 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
| A0A6P3ZDC6 | E-Value: 0.000e+0, PID: 69.82 | (pumilio homolog 1-like isoform X1 {ECO:0000313|Re... [more] |
| A0A2N9IFN2 | E-Value: 0.000e+0, PID: 70.03 | PUM-HD domain-containing protein {ECO:0000259|PROS... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |