DCAR_031151

Resource Type: 
Polypeptide
Name: 
DCAR_031151
Identifier: 
DCAR_031151.mRNA-protein
Sequence: 
MENSSNKLPLLTPEETPPQLLRRPSHHSFDSSFVADADDIAPITGVRDFY
REFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVEN
SVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGV
ILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFL
QSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIV
LAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMA
LVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAA
HPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYG
LTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIM
GYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWG
GEPERAKGSEN*
Sequence Length: 
512
Sequence Checksum: 
abbf84628b3eeb2d80f4f735bde137db
View location in JBrowse: 
DCARv2_Chr9:33110664..33114964+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_031151, derives from mRNA, DCAR_031151.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8F1R5 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 412/513 (80.31%), Postives = 454/513 (88.50%), Query Frame = 0
 
Query:    4 SSNKLPLLTPEETPPQL-----LRRPSH-HSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPERAKGSE 510
            S    PLL+P E    L     L R SH +SF SSFVADADDI PITG++DF+REF IES+KLWYLAGPAIFTS+CQYSLGA+TQT AGHVGTL+LAA SVENSVIAG SFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T +ILM +YIFAAQFLRLIGQTEDISREAGK+A +MIPQLFAYAMNFPIAKFLQSQSK+M MAWI+A ALV+HT FSWL MLKL WGL G AVVLN SWWFIV+AQL+YIFSGTCG+AWSGFSWKAF NLWGFVRLSLASAVMLCLE WYFMALVLFAGYLKNAE+AVDALSIC NI+GWAVM AIGCNAAISVRVSNELGAAHPRTAKFSVVVVV+SSF+IGL LS  L++FR QYP+LF  SE VKR+VY LTPLLA C+VINNIQPALSGVAIGAGWQ +VAYVNI CYY+FGIP+GLI+GYKL++GV+GIW GM++GTV+QT  LFWIVY+TNWNKEASIA  RI+ WGGEPE  K ++
Sbjct:    6 SKQNEPLLSPTEITDDLNNNYYLTRLSHTNSFASSFVADADDIPPITGIQDFFREFTIESKKLWYLAGPAIFTSLCQYSLGAVTQTLAGHVGTLELAAVSVENSVIAGFSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNATAIILMLLYIFAAQFLRLIGQTEDISREAGKMAFYMIPQLFAYAMNFPIAKFLQSQSKMMVMAWIAAIALVLHTFFSWLLMLKLEWGLVGAAVVLNSSWWFIVVAQLLYIFSGTCGQAWSGFSWKAFHNLWGFVRLSLASAVMLCLEVWYFMALVLFAGYLKNAEVAVDALSICMNILGWAVMAAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVISSFLIGLFLSGFLLVFRRQYPNLFAESESVKRLVYELTPLLAFCMVINNIQPALSGVAIGAGWQTLVAYVNIACYYLFGIPLGLILGYKLNLGVQGIWYGMVTGTVIQTFALFWIVYKTNWNKEASIAAARIKMWGGEPEDGKAND 518
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVN4 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}) (Fragment))

HSP 1 Score: 829.706 bits (2142), Expect = 0.000e+0
Identity = 399/512 (77.93%), Postives = 453/512 (88.48%), Query Frame = 0
 
Query:    1 MENSSNKLPLLTPEE---TPPQLLRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPERAKGS 509
            ME S  K PLL+  E   TP   + RP++ SF SSF+ADADDI PI+GV+DF+REF +ESRKLWYLAGPAIFTS+CQYSLGA+TQ FAGHVGTL+LAA S+ENSVIAG SFGVMLGMGSALETLCGQAFGAGQ+DMLGVYMQRSWVILN T  +LMF YIFAA FL+LIGQT +IS+ AG  A+WMIPQL+AYAMNFPIAKFLQ+QSKIM MA I+A ALV+HT FSWLFMLKLGWG+ G AVVLN SWWFIV+AQL+YIFSGTCG AWSGFSWKAFQN+WGFVRLSLASAVMLCLE WYFMAL+LFAGYLKNAE++VDALSIC NI+GWAVMVA+GCNAAISVRVSNELGAAHPRTAKFSVVVVV +SF+IGLV+SLILI+ R +YP+LF+NS EVK +VY LTPLL  C++INN+QP LSGVAIGAGWQA+VAYVNI CYYVFG+P+GL+MGYKL+MGV GIW GML+GTVVQT+VLF I+YRTNWNKEASIA  RI+QWGGE +  +  
Sbjct:   32 METS--KQPLLSTREEDHTPDHHVLRPTNSSFASSFIADADDIGPISGVKDFFREFKVESRKLWYLAGPAIFTSLCQYSLGAVTQVFAGHVGTLELAAVSIENSVIAGFSFGVMLGMGSALETLCGQAFGAGQLDMLGVYMQRSWVILNTTAFVLMFFYIFAAPFLKLIGQTAEISKAAGVFAVWMIPQLYAYAMNFPIAKFLQAQSKIMVMALIAAVALVLHTFFSWLFMLKLGWGMVGAAVVLNVSWWFIVVAQLLYIFSGTCGRAWSGFSWKAFQNIWGFVRLSLASAVMLCLEVWYFMALILFAGYLKNAEVSVDALSICMNILGWAVMVALGCNAAISVRVSNELGAAHPRTAKFSVVVVVATSFLIGLVISLILILARKEYPALFSNSTEVKELVYKLTPLLGVCIIINNVQPVLSGVAIGAGWQALVAYVNIACYYVFGVPLGLVMGYKLNMGVMGIWCGMLTGTVVQTIVLFVIIYRTNWNKEASIAGHRIKQWGGEQDAKEND 541
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UXI8 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 828.165 bits (2138), Expect = 0.000e+0
Identity = 410/519 (79.00%), Postives = 466/519 (89.79%), Query Frame = 0
 
Query:    1 MENSSNKLPLL---------TPEETPPQLLRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPERAKGSE 510
            M+++++K PLL         + +E+   LL R S+ SF SSFVADADDI PI GVRDF+REF IES+KLWYLAGPAIFTSICQYSLGAITQT AGH+GTL+LAA S+ENSVIAGLSFG+MLGMGSALETLCGQA+GAGQI+MLGVYMQRSWVILN T +ILM +YIFA  FLRLIGQTEDISR AG LA+WMIPQLFAYA NFPIAKFLQSQSKIM MAWISA  LV+H+VFSWL MLK GWGL G AVVLN SWWFIV+AQL+YIFSGTCG AWSGFSWKAFQNLWGFVRLSLASA+MLCLETWYFMAL+LFAGYLKNAE++VDALSICTN++GW VMVA+GCNAAISVRVSNELGAAHPRTAKFSVVVVV+SSF++G+VLS IL+IFR QYPSLF+NS+EVK +VY LTPLLA C+V+N IQPALSGVAIGAGWQA+VAYVNI CYY+FGIP+GL++GYK++MGVKGIW GM+SGT VQT+VLFWIVYRTNWNKEAS+A +RI+QWGGEP+ AK ++
Sbjct:    1 MQDNNSKEPLLLSSPREADKSDDESQEYLLGR-SNISFASSFVADADDIPPINGVRDFFREFTIESKKLWYLAGPAIFTSICQYSLGAITQTLAGHLGTLELAAVSIENSVIAGLSFGIMLGMGSALETLCGQAYGAGQIEMLGVYMQRSWVILNTTALILMLLYIFAEAFLRLIGQTEDISRAAGTLAVWMIPQLFAYAANFPIAKFLQSQSKIMVMAWISAIGLVLHSVFSWLLMLKFGWGLVGAAVVLNLSWWFIVVAQLLYIFSGTCGRAWSGFSWKAFQNLWGFVRLSLASAIMLCLETWYFMALILFAGYLKNAEVSVDALSICTNLLGWTVMVAVGCNAAISVRVSNELGAAHPRTAKFSVVVVVVSSFLLGVVLSAILLIFRQQYPSLFSNSDEVKSLVYELTPLLAFCIVLNTIQPALSGVAIGAGWQALVAYVNIACYYLFGIPLGLLLGYKINMGVKGIWYGMVSGTAVQTVVLFWIVYRTNWNKEASVAAKRIQQWGGEPD-AKAND 517
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VAE8 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 827.009 bits (2135), Expect = 0.000e+0
Identity = 407/518 (78.57%), Postives = 463/518 (89.38%), Query Frame = 0
 
Query:    1 MENSSNKLPLL--------TPEETPPQLLRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPERAKGSE 510
            M+++++K PLL         P+E   + L   S+ SF SSFVADADDI PI GVRDF+REF IES+KLWYLAGPAIFTSICQYSLGAITQT AGH+GTL+LAA S+ENSVIAGLSFG+MLGMGSALETLCGQA+GAGQI+MLGVYMQRSWVILN T +ILM +YIFA  FLRLIGQTEDISR AG LA+WMIPQLFAYA NFPIAKFLQ+QSKIM MAWIS   LV+H+VFSWL MLK GWGL G AVVLN SWWFIV+AQL+YIFSGTCG AWSGFSWKAFQNLWGFVRLSLASA+MLCLETWYFMAL+LFAGYLKNAE++VDALSICTN++GW VMVA+GCNAAISVRVSNELGAAHPRTAKFSVVVVV+SSF++G+VLS IL+IFR QYPSLF+NS+EVK +VY LTPLLA C+V+N IQPALSGVAIGAGWQA+VAYVNI CYY+FGIP+GL++GYK++MGVKGIW GM+SGT VQT+VLFWIVYRTNWNKEAS+A +RI+QWGGEP+ AK ++
Sbjct:    1 MQDNNSKEPLLLSSPREADKPDEESQEYLLGRSNISFASSFVADADDIPPINGVRDFFREFTIESKKLWYLAGPAIFTSICQYSLGAITQTLAGHLGTLELAAVSIENSVIAGLSFGIMLGMGSALETLCGQAYGAGQIEMLGVYMQRSWVILNTTALILMLLYIFAEPFLRLIGQTEDISRAAGTLAVWMIPQLFAYAANFPIAKFLQAQSKIMVMAWISVVGLVLHSVFSWLLMLKFGWGLVGAAVVLNLSWWFIVVAQLLYIFSGTCGRAWSGFSWKAFQNLWGFVRLSLASAIMLCLETWYFMALILFAGYLKNAEVSVDALSICTNLLGWTVMVAVGCNAAISVRVSNELGAAHPRTAKFSVVVVVVSSFLLGVVLSAILLIFRQQYPSLFSNSDEVKSLVYELTPLLAFCIVLNTIQPALSGVAIGAGWQALVAYVNIACYYLFGIPLGLLLGYKINMGVKGIWYGMVSGTAVQTVVLFWIVYRTNWNKEASVAAKRIQQWGGEPD-AKAND 517
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2AY61 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 826.624 bits (2134), Expect = 0.000e+0
Identity = 406/508 (79.92%), Postives = 451/508 (88.78%), Query Frame = 0
 
Query:    2 ENSSNKLPLLTPEETPPQLLRRPSH----HSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPER 505
             NS    PLL+  E     L   ++    +SF SSFVAD DDI PI G++DF+REF +ES+KLWYLAGPAIFTSICQYSLGA+TQTFAGH+GTLQLAA S+ENSVIAG SFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T VILM +YIFAAQFLRLIGQTEDISREAGK+A++MIPQLFAYAMNFPIAKFLQSQSK+M MAWI+A ALV+HT FSWL MLKLGWGL G AVVLN SWWFIV+AQ++YIFSGTCG+AWSGF+WKAF NLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAE+AVDALSIC NI+GWAVM AIGCNAAISVRVSNELGA HPRTAKFSV+VVV SSF+IGL+LS+ L++FR QYPSLF  SE VKR+VY LTPLLA C+V+NNIQPALSGVAIGAGWQA+VAYVNI CYY+FGIP+GLI+GYK +MGV+GIW GM+SGTV+QT VLFWIVY+TNWNKEA IA  RI+ WGGEPE 
Sbjct:    4 HNSKQNEPLLSQTEISTSDLNNTNNSLIRNSFGSSFVADVDDIPPIIGIQDFFREFSVESKKLWYLAGPAIFTSICQYSLGAVTQTFAGHLGTLQLAAVSIENSVIAGFSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNSTAVILMLLYIFAAQFLRLIGQTEDISREAGKMALYMIPQLFAYAMNFPIAKFLQSQSKMMVMAWIAAIALVIHTFFSWLLMLKLGWGLVGAAVVLNSSWWFIVVAQMLYIFSGTCGQAWSGFTWKAFLNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEVAVDALSICMNILGWAVMAAIGCNAAISVRVSNELGATHPRTAKFSVLVVVFSSFLIGLLLSVFLLVFRSQYPSLFAESESVKRLVYELTPLLAFCIVVNNIQPALSGVAIGAGWQALVAYVNIACYYLFGIPLGLILGYKFNMGVQGIWYGMVSGTVIQTFVLFWIVYKTNWNKEAYIAAARIKMWGGEPEN 511
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LFU0 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 404/518 (77.99%), Postives = 463/518 (89.38%), Query Frame = 0
 
Query:    1 MENSSNKLPLLTPEETPPQLLRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAA------ISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGE-PERAKGSEN 511
            ME+SS K PLL+P E  PQ+  + S     SSFVADA DI PITG++DF+REF +ES+KLWYLAGPAIF S+C+YSLGA+TQTFAGH+GTL+LAA SVENSVIAG SFG+MLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T V+LM +YIFAA FLRLIGQTEDISREAGK+A++MIPQL+AYAMNFPIAKFLQ+QSKIM MAWI+A ALV+HT FSWLFMLKLGWGL G AVVLN SWWFIV+AQL+YIFSGTCG+AWSGFSWKAF NLWGFV+LSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSIC NI+GWAVM AIGCNAA       SVRVSNELGAAHPRTA+FSVVVVV+SSF++GL+LS++L++FR+QYPSLFT +E VKR+V+ LTPLLA C+V+NNIQPALSGVAIGAGWQA+VAYVNI CYY+FGIP+GL++GYKL+MGV+GIW GM++GTV+QT  LFWIVY+TNWNKEASIA +RI+ WGGE   +A  +E 
Sbjct:    1 MEDSS-KQPLLSPCE--PQITTQTSA----SSFVADAADIPPITGIQDFFREFFVESKKLWYLAGPAIFASLCRYSLGAVTQTFAGHLGTLELAAVSVENSVIAGFSFGIMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNTTAVLLMLLYIFAAPFLRLIGQTEDISREAGKMALYMIPQLYAYAMNFPIAKFLQAQSKIMVMAWIAAIALVLHTFFSWLFMLKLGWGLVGAAVVLNSSWWFIVVAQLLYIFSGTCGQAWSGFSWKAFHNLWGFVKLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICMNILGWAVMAAIGCNAAKKYAKVFSVRVSNELGAAHPRTARFSVVVVVISSFLVGLLLSIVLLVFREQYPSLFTETESVKRLVFELTPLLAFCMVVNNIQPALSGVAIGAGWQALVAYVNIACYYLFGIPLGLLLGYKLNMGVQGIWYGMITGTVIQTFTLFWIVYKTNWNKEASIAAERIKMWGGEAASKANDAEK 511
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4DPV7 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 819.691 bits (2116), Expect = 0.000e+0
Identity = 417/520 (80.19%), Postives = 466/520 (89.62%), Query Frame = 0
 
Query:    1 MENSSNKLPLLTPEETPPQL--------LRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPE-RAKGSEN 511
            ME SS K PLL+P++  PQ+        L R SH SF SSFVAD+DDI PITG RDF+REF +ES+KLWYLAGPAIFTS+CQYSLGA+TQTFAGHVGTL+LAA SVENSVIAG SFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T VILM +YIFAA FLRLIGQTEDISREAGK+A++MIPQL+AYAMNFPIAKFLQSQSKIM MAWI+A ALV+HT FSWLFMLKLGWGL G AVVLN SWWFIV+AQL+YIFSGTCG+AWSGFSWKAF NLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAE+AVDALSIC NI+GWAVM AIGCNAAISVRVSNELGAAHPRTAKFSVVVVV+SSF+IGL+LS+ L++FR QYP+LF  SE VKR+VY LTPLLA C+V+NNIQPALSGVAIGAGWQA+VAYVNI CYY+FGIP+GL++GYKL+MGV+GIW GM+SGT++QT  LFWIVY+T+WNKEASIA +RI+ WGGE   +A  +E 
Sbjct:    1 MEGSS-KQPLLSPKD--PQITDQASDNYLIRLSHTSFASSFVADSDDIPPITGFRDFFREFSVESKKLWYLAGPAIFTSLCQYSLGAVTQTFAGHVGTLELAAVSVENSVIAGFSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNTTAVILMLLYIFAAPFLRLIGQTEDISREAGKMALYMIPQLYAYAMNFPIAKFLQSQSKIMVMAWIAAIALVLHTFFSWLFMLKLGWGLVGAAVVLNSSWWFIVVAQLLYIFSGTCGQAWSGFSWKAFHNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEVAVDALSICMNILGWAVMAAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVVSSFLIGLLLSVFLLVFRRQYPTLFAESESVKRLVYELTPLLAFCIVVNNIQPALSGVAIGAGWQALVAYVNIACYYLFGIPLGLLLGYKLNMGVQGIWYGMVSGTLIQTFALFWIVYKTSWNKEASIAAERIKMWGGESNGKADDAEK 517
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314LFT7 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 416/510 (81.57%), Postives = 460/510 (90.20%), Query Frame = 0
 
Query:    1 MENSSNKLPLLTPEETPPQL--------LRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGE 502
            ME+SS K PLL P +  PQ+        L R SH SF SSFVAD+DDI PITG+RDF+REF +ES+KLWYLAGPAIFTS+CQYSLGA+TQTFAGHVGTL+LAA SVENSVIAG SFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T VILM +YIFAA FLRLIGQTEDISREAGK+A++MIPQL+AYAMNFPIAKFLQSQSKIM MAWI+A ALV+HT FSWLFMLKLGWGL G AVVLN SWWFIV+AQL+YIFSGTCG+AWSGFSWKAF NLWGFVRLSLASAVMLCLE WYFMALVLFAGYLKNAE+AVDALSIC NI+GWAVM AIGCNAAISVRVSNELGAAHPR AKFSVVVVV+SSF+IGL+LS+ L++FR QYP+LF  SE VKR+VY LTPLLA C+V+NNIQPALSGVAIGAGWQA+VAYVNI CYYVFGIP+GL++GYKL+MGV+GIW GM+SGTV+QT  LFWIVY+TNWNKEASIA +RI+ WGGE
Sbjct:    1 MEDSS-KQPLLPPRD--PQITDLASDNYLIRLSHTSFASSFVADSDDIPPITGIRDFFREFSVESKKLWYLAGPAIFTSLCQYSLGAVTQTFAGHVGTLELAAVSVENSVIAGFSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNTTAVILMVLYIFAAPFLRLIGQTEDISREAGKMALYMIPQLYAYAMNFPIAKFLQSQSKIMVMAWIAAIALVLHTFFSWLFMLKLGWGLVGAAVVLNSSWWFIVVAQLLYIFSGTCGQAWSGFSWKAFHNLWGFVRLSLASAVMLCLEVWYFMALVLFAGYLKNAEVAVDALSICMNILGWAVMAAIGCNAAISVRVSNELGAAHPRAAKFSVVVVVVSSFLIGLLLSVFLLVFRRQYPTLFAESESVKRLVYELTPLLAFCIVVNNIQPALSGVAIGAGWQALVAYVNIACYYVFGIPLGLLLGYKLNMGVQGIWYGMVSGTVIQTFALFWIVYKTNWNKEASIAAKRIKMWGGE 507
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TYQ3 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 814.683 bits (2103), Expect = 0.000e+0
Identity = 399/520 (76.73%), Postives = 451/520 (86.73%), Query Frame = 0
 
Query:    1 MENSSNKLPLLTPEETPPQ---------LLRRPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPERAKGSEN 511
            MENS++K PLL P +   Q         L  R S HSF SSFV D DDI PI   R F++ F  ES+KLWYLAGPAIFTSICQYSLGAITQTFAGHVGTL LAAFS+EN+VIAGLSFGVMLGMGSALETLCGQA+GAGQI+MLGVYMQRSWVIL  T  +L F+YIFA  FL+LIGQ EDISR AGK A+WMIPQL+AYA+NFPIAKFLQ+QSKIM +AWIS  AL +H +FSWL MLKLGWG+AGGAVVLN SWWFIV+AQLVYIFSGTCG AW+GFSW+AFQNLWGF+RLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIG NAAISVRVSNELGA+HPRTAKFSV+VVV+S+FVIGL++S++L+IF+ QYP LF+NS EV  +VY LTPLLA C+V+NN+QPALSGVAIGAGWQA+VAYVNI CYYVFGIP+GLIMGY L+MGVKGIW GM++GTV+QT+VLFWIVY+TNWNKEAS A QRI+ WGG  +R   + +
Sbjct:    1 MENSTSKQPLLPPPDDDQQEPELSIQDYLAYRWSTHSFVSSFVDDGDDIPPIVSPRRFFKAFTRESKKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLDLAAFSIENTVIAGLSFGVMLGMGSALETLCGQAYGAGQIEMLGVYMQRSWVILLTTAFLLTFIYIFAFPFLQLIGQAEDISRLAGKFALWMIPQLYAYALNFPIAKFLQAQSKIMGLAWISMVALALHVLFSWLLMLKLGWGMAGGAVVLNASWWFIVVAQLVYIFSGTCGRAWTGFSWRAFQNLWGFMRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGFNAAISVRVSNELGASHPRTAKFSVLVVVISAFVIGLLISIVLLIFQKQYPYLFSNSSEVIDLVYQLTPLLAFCIVVNNVQPALSGVAIGAGWQALVAYVNIACYYVFGIPVGLIMGYALNMGVKGIWYGMVAGTVLQTMVLFWIVYKTNWNKEASAAAQRIKLWGGGDQREAKTND 520
[Close]
BLAST of DCAR_031151 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4CZ91 (Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004914} (Multidrug and toxic compound extrusion protein {ECO:0000256|RuleBase:RU004914}))

HSP 1 Score: 812.757 bits (2098), Expect = 0.000e+0
Identity = 392/482 (81.33%), Postives = 437/482 (90.66%), Query Frame = 0
 
Query:   23 RPSHHSFDSSFVADADDIAPITGVRDFYREFIIESRKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLQLAAFSVENSVIAGLSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNCTGVILMFVYIFAAQFLRLIGQTEDISREAGKLAIWMIPQLFAYAMNFPIAKFLQSQSKIMAMAWISAAALVVHTVFSWLFMLKLGWGLAGGAVVLNFSWWFIVLAQLVYIFSGTCGEAWSGFSWKAFQNLWGFVRLSLASAVMLCLETWYFMALVLFAGYLKNAEIAVDALSICTNIVGWAVMVAIGCNAAISVRVSNELGAAHPRTAKFSVVVVVLSSFVIGLVLSLILIIFRDQYPSLFTNSEEVKRVVYGLTPLLATCLVINNIQPALSGVAIGAGWQAVVAYVNIVCYYVFGIPIGLIMGYKLDMGVKGIWIGMLSGTVVQTLVLFWIVYRTNWNKEASIAEQRIRQWGGEPE 504
            RP+  SF SSFVADADDIAPITGVRDF+RE ++ES+KLWYLAGPAIFTSICQYSLGAITQTFAGHVGTL LAA S+ENSVIAG SFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILN T  +LMF+YIFA   L+LIGQT +IS  AG  A+WMIPQL+AYA+NFP AKFLQ+QSKIMAMA I+A   ++HTVFSWLFMLKLGWGL G A+VLNFSWWFIV+AQLVYIF GTCG AW+GFS KAF+NLWGFV+LSLASAVMLCLE WYFMAL+LFAGYLKNAEI+VDALSIC NI+GW VMVA+GCNAAISVRVSNELGAAHPRTAKF+VVVVVL+SF IG+VLSLILI+ R +YPSLFT+S +VK +VY LTPLLA C+VINN+QP LSGVAIGAGWQAVVAYVNI CYY+FGIP+GLI+GYKLDMGVKGIW GM+SGT+VQT VLFW++YRTNWNKEASIA  RI+QWGGE +
Sbjct:  107 RPNTSSF-SSFVADADDIAPITGVRDFFRETLVESKKLWYLAGPAIFTSICQYSLGAITQTFAGHVGTLDLAAVSIENSVIAGFSFGVMLGMGSALETLCGQAFGAGQIDMLGVYMQRSWVILNSTAFVLMFLYIFATPLLKLIGQTTEISEAAGTFAVWMIPQLYAYAVNFPTAKFLQAQSKIMAMAVIAAVVFILHTVFSWLFMLKLGWGLVGAAIVLNFSWWFIVVAQLVYIFCGTCGRAWTGFSRKAFENLWGFVKLSLASAVMLCLEVWYFMALILFAGYLKNAEISVDALSICMNILGWTVMVALGCNAAISVRVSNELGAAHPRTAKFAVVVVVLNSFAIGVVLSLILILTRKEYPSLFTDSTDVKELVYELTPLLAACIVINNVQPVLSGVAIGAGWQAVVAYVNIACYYIFGIPLGLILGYKLDMGVKGIWYGMMSGTIVQTCVLFWMIYRTNWNKEASIAGNRIKQWGGESD 587
Match NameStatsDescription
A0A1U8F1R5E-Value: 0.000e+0, PID: 80.31Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A5B6YVN4E-Value: 0.000e+0, PID: 77.93Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A068UXI8E-Value: 0.000e+0, PID: 79.00Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A6P6VAE8E-Value: 0.000e+0, PID: 78.57Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A6N2AY61E-Value: 0.000e+0, PID: 79.92Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A314LFU0E-Value: 0.000e+0, PID: 77.99Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A1S4DPV7E-Value: 0.000e+0, PID: 80.19Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A314LFT7E-Value: 0.000e+0, PID: 81.57Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A6I9TYQ3E-Value: 0.000e+0, PID: 76.73Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]
A0A4S4CZ91E-Value: 0.000e+0, PID: 81.33Protein DETOXIFICATION {ECO:0000256|RuleBase:RU004... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.