Resource Type:
Polypeptide
Name:
DCAR_003115
Identifier:
DCAR_003115.mRNA-protein
Sequence:
MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSR
NPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKE
KILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSENAPVFTPP
QTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSE
MLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLA
LNDDLQRLLVKHEDLASGDVTENTKPELTRAIVPVDAPLIDTGDTKQNNG
GSTSSAVAGKQSLQSTPASNGTPSISANANTKMVDLLSGDDDYSLALVPV
GEPQPTVPVSQQNALALVDMFPQSNASTPQTYPSTPQLQQPQNFQSSQSS
IYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY
GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVY
QPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAM
HPQQMQYGQMGYMQPQPMYNQMPGYGQPTGYGYGYGYGQQQNNQFLEQKM
SGLSVRDNGGLSSSTYQSASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT
M*
Sequence Length:
652
Sequence Checksum:
06b6f29f7aa43e31063e24c0bcd26f7e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003115, derives from mRNA, DCAR_003115. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APD5 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58214.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58214.1}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 468/673 (69.54%), Postives = 525/673 (78.01%), Query Frame = 0
Match: A0A5B7APD5 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58214.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58214.1}))
HSP 1 Score: 803.512 bits (2074), Expect = 0.000e+0
Identity = 468/673 (69.54%), Postives = 525/673 (78.01%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDV--TENTKPELTRAIVPVDAPLIDTGDTKQNNGGSTSSAVAGKQ-SLQSTPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSN---ASTP--QTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQS-SSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMNIEICD+CNRDP QAKDVV+GIKKR+ S+NP+VQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIV+KKPDFHVKEKIL+LIDTWQE FGGARARYPQYYAAYQELLR+GAVFPQRS+ +APVFTPPQTQPLSSYPQNLRT E QEAAE+SA++EFPTLSLTEIQNAR IMDVL+EML+A+ P N+EGL+QEV+VDLVEQCRTYK+RVVHLVNSTSDESLLCQGLALNDDLQRLL KHE +ASG TE KPE RA+V VDAPLIDTG KQ + GSTS A G Q +L + PA+NG + + KM DLLSGDD + SLA+VPVG PQP PVSQQNALALVDMF QSN ++ P Q YPSTPQ QQ QN+QS Q S+YPNGS+P+ PQY QSLY Q NP WNGQI QQQPPSPVY GSLPPPPWEA P DN+ + + PPMQ + V HSQPM + Q QPMGN+Q GMY P+ G+ NNQ + NQ+ G +PQ +Q GQSM M+PQQMQ GQM M PQ MY NQM G GYGYGYGYGQQQN Q+LEQ+MSGLSVRD+ L +S+YQ S SYVP G+P+KPEDKLFGDLVDI K KP KT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNIEICDMCNRDPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVKKKPDFHVKEKILILIDTWQESFGGARARYPQYYAAYQELLRVGAVFPQRSDRSAPVFTPPQTQPLSSYPQNLRTPESQQEAAESSAEAEFPTLSLTEIQNAREIMDVLAEMLTALDPGNKEGLRQEVLVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRLLAKHEAIASGTSVKTEKPKPEPVRALVSVDAPLIDTGYNKQPDRGSTSGAGLGTQLALPAPPATNGPATTPPKSYPKM-DLLSGDDFNSPTAENSLAIVPVGGPQPVSPVSQQNALALVDMFSQSNNTQSANPGGQAYPSTPQYQQQQNYQSPQPSVYPNGSVPNMMLPQYEQSLYTQGTNPAWNGQI-------AHQQQPPSPVYGAQSSGSLPPPPWEAQP-TDNSQLAGTQFSPPMQQVTQVVVTHSQPMLSGTHPQGSQPMGNDQVVGMYIQPVTSGHPPAINNQAIQSNQLVGLHPQPIQVGQSMGMYPQQMQSGQMALMYPQQMYSNQMAG----YGYGYGYGYGQQQNAQYLEQRMSGLSVRDDSALRNSSYQVSTPSYVPPGRPTKPEDKLFGDLVDIAKLKPTKT 660
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q3A4 ((TOM1-like protein {ECO:0000313|EMBL:PSS01191.1}))
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 428/669 (63.98%), Postives = 492/669 (73.54%), Query Frame = 0
Match: A0A2R6Q3A4 ((TOM1-like protein {ECO:0000313|EMBL:PSS01191.1}))
HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0
Identity = 428/669 (63.98%), Postives = 492/669 (73.54%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSENAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDV--TENTKPELTRAIVPVDAPLIDTGDTKQNNGGSTSSAVAGKQSLQSTPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVS-QQNALALVDMFPQSN-----ASTPQTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVYGS----LPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQSASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMNIEICD+ NRDP Q KDVV+GIKKR+ S+N +VQLLALTLLETI+KNCGD++HMHVAEKD+LHEMVKIV+KKPDFHVKEKIL+LIDTWQE FGGARAR+PQ+YAAY ELLR GAVFP R +APVFTPPQTQPL+SYPQ++RT E +E E+SA++EFPTLSLTEIQNARGIMDVLSEML+A+ P N+EGL+QEVI+DLVEQCRTYK+R VHLVNSTSDESLLCQGLALNDDLQRLL +HE L SG TE KPE RA+V VD PLIDT D+KQ++GGSTS A G Q L P + P+ + +DLLSGDD SLALVPVGEPQP PV+ QQNALALVDMF +N +S + YPSTPQ Q QNFQ SQ+S YPNG P+ PQY QS+YAQ NP WNGQI QQ P SPVYG+ PPP DN+ Y PMQ + V H+QPMP V Q QP+GN+Q GMY I G+LS NNQ ++ N MA +PQ + GQ M ++PQQMQ GQ GYM PQ MY NQMP GYGQQQN QFLEQ++SGL+ RD+ L +S+Y SYVPSGKPSKPEDKLFGDLVDI KF+PAKT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNIEICDMLNRDPSQGKDVVKGIKKRLGSKNSKVQLLALTLLETIVKNCGDLIHMHVAEKDVLHEMVKIVKKKPDFHVKEKILILIDTWQEAFGGARARFPQFYAAYHELLRAGAVFPHRV-SAPVFTPPQTQPLTSYPQHVRTPEHREEGVESSAEAEFPTLSLTEIQNARGIMDVLSEMLNAVDPGNKEGLRQEVIIDLVEQCRTYKQRAVHLVNSTSDESLLCQGLALNDDLQRLLARHEALTSGTSVQTEKLKPEPGRALVNVDTPLIDTRDSKQSDGGSTSDAGGGLQLLLPAPPAANGPATTLKKADPKMDLLSGDDFNSPSAANSLALVPVGEPQPASPVANQQNALALVDMFSPNNGNETVSSVGRAYPSTPQYQVQQNFQHSQTSAYPNGIGPNMMAPQYEQSVYAQGPNPAWNGQI-------SPQQHPHSPVYGAESSSSLPPPPWEAQPPDNSQLGGGQYPQPMQVTQVVVTHTQPMPSGV-PQGSQPVGNDQVVGMYIQSITSGHLSAINNQGILSNHMARMHPQLIPWGQQMGVYPQQMQSGQAGYMYPQQMYSNQMP------------GYGQQQNAQFLEQRISGLTFRDDSALMNSSYHPTPSYVPSGKPSKPEDKLFGDLVDIAKFQPAKT 648
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ASV0 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58213.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58213.1}))
HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 464/672 (69.05%), Postives = 517/672 (76.93%), Query Frame = 0
Match: A0A5B7ASV0 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58213.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58213.1}))
HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 464/672 (69.05%), Postives = 517/672 (76.93%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDV--TENTKPELTRAIVPVDAPLIDTGDTKQNNGGSTSSAVAGKQ-SLQSTPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSN---ASTP--QTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMNIEICD+CNRDP QAKDVV+GIKKR+ S+NP+VQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIV+KKPDFHVKEKIL+LIDTWQE FGGARARYPQYYAAYQELLR+GAVFPQRS+ +APVFTPPQTQPLSSYPQNLRT E QEAAE+SA++EFPTLSLTEIQNAR IMDVL+EML+A+ P N+EGL+QEV+VDLVEQCRTYK+RVVHLVNSTSDESLLCQGLALNDDLQRLL KHE +ASG TE KPE RA+V VDAPLIDTG KQ + GSTS A G Q +L + PA+NG + + KM DLLSGDD + SLA+VPVG PQP PVSQQNALALVDMF QSN ++ P Q YPSTPQ QQ QN+QS Q S+YPNGS+P+ PQY QSLY Q NP WNGQI QQQPPSPVY GSLPPPPWEA QP S AG HSQPM + Q QPMGN+Q GMY P+ G+ NNQ + NQ+ G +PQ +Q GQSM M+PQQMQ GQM M PQ MY NQM GYGYGYGYGQQQN Q+LEQ+MSGLSVRD+ L +S+YQ S SYVP G+P+KPEDKLFGDLVDI K KP KT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNIEICDMCNRDPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVKKKPDFHVKEKILILIDTWQESFGGARARYPQYYAAYQELLRVGAVFPQRSDRSAPVFTPPQTQPLSSYPQNLRTPESQQEAAESSAEAEFPTLSLTEIQNAREIMDVLAEMLTALDPGNKEGLRQEVLVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRLLAKHEAIASGTSVKTEKPKPEPVRALVSVDAPLIDTGYNKQPDRGSTSGAGLGTQLALPAPPATNGPATTPPKSYPKM-DLLSGDDFNSPTAENSLAIVPVGGPQPASPVSQQNALALVDMFSQSNNTQSANPGGQAYPSTPQYQQQQNYQSPQPSVYPNGSVPNMMLPQYEQSLYTQGTNPAWNGQI-------AHQQQPPSPVYGAQSSGSLPPPPWEA--------------QPTDNSQLAGT-HSQPMLSGTHPQGSQPMGNDQVVGMYIQPVTSGHPPAINNQAIQSNQLVGLHPQPIQVGQSMGMYPQQMQSGQMALMYPQQMYSNQM----AGYGYGYGYGYGQQQNAQYLEQRMSGLSVRDDSALRNSSYQVSTPSYVPPGRPTKPEDKLFGDLVDIAKLKPTKT 645
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AS42 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58211.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58211.1}))
HSP 1 Score: 789.26 bits (2037), Expect = 0.000e+0
Identity = 465/673 (69.09%), Postives = 520/673 (77.27%), Query Frame = 0
Match: A0A5B7AS42 ((Putative TOM1-like protein 2 {ECO:0000313|EMBL:MPA58211.1}) (2.3.2.24 {ECO:0000313|EMBL:MPA58211.1}))
HSP 1 Score: 789.26 bits (2037), Expect = 0.000e+0
Identity = 465/673 (69.09%), Postives = 520/673 (77.27%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDV--TENTKPELTRAIVPVDAPLIDTGDTKQNNGGSTSSAVAGKQ-SLQSTPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSN---ASTP--QTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQS-SSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMNIEICD+CNRDP QAKDVV+GIKKR+ S+NP+VQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIV+KKPDFHVKEKIL+LIDTWQE FGGARARYPQYYAAYQELLR+GAVFPQRS+ +APVFTPPQTQPLSSYPQNLRT E QEAAE+SA++EFPTLSLTEIQNAR IMDVL+EML+A+ P N+EGL+QEV+VDLVEQCRTYK+RVVHLVNSTSDESLLCQGLALNDDLQRLL KHE +ASG TE KPE RA+V VDAPLIDTG KQ + GSTS A G Q +L + PA+NG P+ + KM DLLSGDD + SLA+VPVG PQP PVSQQNALALVDMF QSN ++ P Q YPSTPQ QQ QN+QS Q S+YPNGS+P+ PQY QSLY Q NP WNGQI QQQPPSPVY GSLPPPPWEA P DN+ + + PPMQ + V HSQPM + Q QPMGN+Q GMY P+ G+ NNQ + NQ+ G +PQ +Q GQSM M+PQQMQ GQM M PQ MY NQM G GYGYGYGYGQQQN +FLEQ+M GLSVRD+ L +S+YQ S S GKP K EDKLFGDLVDI K KP KT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNIEICDMCNRDPGQAKDVVKGIKKRLGSKNPKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVKKKPDFHVKEKILILIDTWQESFGGARARYPQYYAAYQELLRVGAVFPQRSDRSAPVFTPPQTQPLSSYPQNLRTPESQQEAAESSAEAEFPTLSLTEIQNAREIMDVLAEMLTALDPGNKEGLRQEVLVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRLLAKHEAIASGTSVKTEKPKPEPVRALVSVDAPLIDTGYNKQPDRGSTSGAGLGTQLALPAPPATNG-PTTPPKSYPKM-DLLSGDDFNSPTAENSLAIVPVGGPQPVSPVSQQNALALVDMFSQSNNTQSANPGGQAYPSTPQYQQQQNYQSPQPSVYPNGSVPNMMLPQYEQSLYTQGTNPAWNGQI-------AHQQQPPSPVYGAQSSGSLPPPPWEAQP-TDNSQLAGTQFSPPMQQVTQVVVTHSQPMLSGTHPQGSQPMGNDQVVGMYIQPVTSGHPPAINNQAIQSNQLVGLHPQPIQVGQSMGMYPQQMQSGQMALMYPQQMYSNQMAG----YGYGYGYGYGQQQNAEFLEQRMYGLSVRDDSALRNSSYQVSTPSNALPGKPKKQEDKLFGDLVDIAKLKPTKT 659
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RS40 ((Protein transporter, putative {ECO:0000313|EMBL:EEF45900.1}))
HSP 1 Score: 788.489 bits (2035), Expect = 0.000e+0
Identity = 433/681 (63.58%), Postives = 492/681 (72.25%), Query Frame = 0
Match: B9RS40 ((Protein transporter, putative {ECO:0000313|EMBL:EEF45900.1}))
HSP 1 Score: 788.489 bits (2035), Expect = 0.000e+0
Identity = 433/681 (63.58%), Postives = 492/681 (72.25%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDV----TENTKPELTRAIVPVDAPLIDTGDT-KQNNGGSTSS-AVAGKQSLQSTPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSNAS-----------TPQTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMNIEICD+CN DP QAKDVV+GIKKRI S++P+VQLLALTLLETI+KNCGDIVHMHVAE+D+LHEMVKIV+KKPDFHVKEKIL LIDTWQE FGGARARYPQYY AYQELLR GAVFPQR+E +APVFTPPQTQPLSSYPQNLR +E QE AE+SA+SEFPTLSLTEIQNARGIMDVL+EMLSAI P N+EGL+QEVIVDLVEQCRTYK+RVVHLVNST+DESLLCQGLALNDDLQR+L KHE +ASG KPE A++ V PL+D GD KQ + GS S+ V + L + PA+NG P+ +AN KM DLLSGDD + SLALVPVGEPQP P SQQNAL L DMF SN S + T STPQ+QQ NF ++ IY NG+ + P+Y ++Y Q P WNGQ+ QQQQP SPV+ GSLPPPPWEA P AD +P + + Y P MQ + V H QPM + Q QP G++ GMY PI GG LS +N + NQ G PQ +QGGQ M M PQ MQ GQM P MY NQM GYGYGQQQ QFLEQ+M GLSVRD+ GL +S+YQ S SSYVP KPSKPEDKLFGDLVDI KFKP K+
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNIEICDMCNHDPAQAKDVVKGIKKRIGSKSPKVQLLALTLLETIVKNCGDIVHMHVAERDILHEMVKIVKKKPDFHVKEKILTLIDTWQEAFGGARARYPQYYTAYQELLRAGAVFPQRTERSAPVFTPPQTQPLSSYPQNLRNNEFRQEGAESSAESEFPTLSLTEIQNARGIMDVLAEMLSAIDPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRVLAKHEAIASGTSGPAEKPKPKPESGGALLDV-GPLVDAGDNHKQRDEGSASNPGVLNQLLLPAPPATNG-PTARTSANPKM-DLLSGDDFSSPKTETSLALVPVGEPQPATPPSQQNALVLFDMFSDSNNSPNVVNVQPTHMSGLTNSSTPQVQQQHNFHPQEAGIYTNGTALNTGSPRYEHAVYMQSTGPAWNGQV-------AQQQQPASPVFGAQSSGSLPPPPWEAQP-ADGSPVAGSQYSPQMQLTQVVVTHQQPMSSGMYPQGPQPSGSDHVVGMYIQPITGGQLSAIHNPVVQNNQF-GLQPQAVQGGQYMGMLPQPMQAGQMASAYPPQMYGNQM----------AGYGYGQQQGTQFLEQRMYGLSVRDDNGLRNSSYQVSTSSYVPLKKPSKPEDKLFGDLVDIAKFKPTKS 659
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2NFE7 ((Uncharacterized protein {ECO:0000313|EMBL:VFU65794.1}))
HSP 1 Score: 773.081 bits (1995), Expect = 0.000e+0
Identity = 432/686 (62.97%), Postives = 495/686 (72.16%), Query Frame = 0
Match: A0A6N2NFE7 ((Uncharacterized protein {ECO:0000313|EMBL:VFU65794.1}))
HSP 1 Score: 773.081 bits (1995), Expect = 0.000e+0
Identity = 432/686 (62.97%), Postives = 495/686 (72.16%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSENA-PVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDVT----ENTKPELTRAIVPVDAPLIDTGDTKQN--NGGSTSSAVAGKQSLQ-----STPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSNAS--------TPQTYPS---TPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVN+MVERATSD+LIGPDWAMNIEICDICNRDP QAKDVV+GIK+++ SRN +VQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKI +KKPDFHVKEKILVL+DTWQE FGGARARYPQYYAAYQELLR GAVFP RSE + PVFTPPQTQPLSSYPQNLR E Q AE+ +SEFPTLSLTEIQNARGIMDVL+EML+AI P N+EGL+QEVIVDLV+QCRTYK+RVVHLVNSTSDESLLCQGL+LNDDLQR+L +HE ++SG E K E + A+V +DAPL+DTGD K +GGSTS++ +G Q+L + PA+NG P+ A AN K DLLSGD+ + SLALVPVGEPQ T P+SQQNAL L DMF N + T P+ T Q Q QNFQ+ + +Y NGS P+ PPQY QS+Y Q P WNG +PQQQQQ SPVY GSLPPPPWEA P AD +P + Y MQ + V SQP P ++ P G N+ GMY PI G+L NNQ+ NQ G P MQGGQ M M+PQ MQ G M M PQ MY NQM GYGYG QQ QFLEQ++ GLSVRD+ GL +S+YQ S + YVPSGKPSKPEDKLFGDLVDI+KFKP K+
Sbjct: 1 MVNAMVERATSDMLIGPDWAMNIEICDICNRDPTQAKDVVKGIKRKLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIAKKKPDFHVKEKILVLVDTWQEAFGGARARYPQYYAAYQELLRAGAVFPPRSERSTPVFTPPQTQPLSSYPQNLRNIEYPQGEAESPTESEFPTLSLTEIQNARGIMDVLAEMLNAIDPGNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLARHESISSGTPVPVKDEKLKAESSGALVDIDAPLVDTGDNKDKSPDGGSTSNSRSGAQTLNQLLLPAPPATNG-PTTLAAANPKF-DLLSGDNYNSPKAETSLALVPVGEPQATSPLSQQNALVLFDMFTDGNNAPNAVNMQPTNLAGPTNSLTSQFPQQQNFQTPDAGVYQNGSSPNMGPPQYEQSVYMQAPGPAWNGHLPQQQQQPA------SPVYGAQSSGSLPPPPWEAQP-ADTSPVTGAQYPQSMQVTQMAVTPSQPPPSGMH-----PQGPNEQVGMYMQPITTGHLPAVNNQSAPSNQFLGMNPHAMQGGQYMGMYPQHMQAGPMASMYPQQMYGNQM----------AGYGYGPQQGAQFLEQRVHGLSVRDDNGLRNSSYQVSTTPYVPSGKPSKPEDKLFGDLVDISKFKPGKS 662
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A837A0L2 ((TOM1 protein {ECO:0000313|EMBL:KAG5225375.1}))
HSP 1 Score: 773.081 bits (1995), Expect = 0.000e+0
Identity = 431/686 (62.83%), Postives = 491/686 (71.57%), Query Frame = 0
Match: A0A837A0L2 ((TOM1 protein {ECO:0000313|EMBL:KAG5225375.1}))
HSP 1 Score: 773.081 bits (1995), Expect = 0.000e+0
Identity = 431/686 (62.83%), Postives = 491/686 (71.57%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSENA-PVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDVT----ENTKPELTRAIVPVDAPLIDTGDTKQN--NGGSTSSAVAGKQSLQ-----STPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSNAS-----------TPQTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVN+MVERATSD+LIGPDWAMNIEICDICNRDP QAKDVV+GIK+++ SRN +VQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKI +KKPDFHVKEKILVL+DTWQE FGGARARYPQYYAAYQELLR GAVFP RSE + PVFTPPQTQPLSSYPQNLR E Q AE+ +SEFPTLSLTEIQNARGIMDVL+EML+AI P N+EGL+QEVIVDLV+QCRTYK+RVVHLVNSTSDESLLCQGL+LNDDLQR+L +HE ++SG E K E + A+V +DAPL+DTGD K +GGSTS++ +G Q+L + PA+NG P+ A AN K DLLSGD+ + SLALVPVGEPQ T P+SQQNAL L DMF N + T T Q Q QNFQ+ + Y NGS P+ PPQY QS+Y Q P WNG +PQQQQQ SPVY GSLPPPPWEA P AD +P + Y MQ + V QP P ++ P G N+ GMY PI G+L NNQ+ NQ G P MQGGQ M M+PQ MQ G M M PQ MY NQM GYGYG QQ QFLEQ+M GLSVRD+ GL +S+YQ S + YVPSGKPSKPEDKLFGDLVDI+KFKP K+
Sbjct: 1 MVNAMVERATSDMLIGPDWAMNIEICDICNRDPTQAKDVVKGIKRKLGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIAKKKPDFHVKEKILVLVDTWQEAFGGARARYPQYYAAYQELLRAGAVFPPRSERSTPVFTPPQTQPLSSYPQNLRNIEYPQGEAESPTESEFPTLSLTEIQNARGIMDVLAEMLNAIDPGNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLARHESISSGTPVPVKDEKLKAESSGALVDIDAPLVDTGDNKDKSPDGGSTSNSRSGAQTLNQLLLPAPPATNG-PTTLAAANPKF-DLLSGDNYNSPKAETSLALVPVGEPQATSPLSQQNALVLFDMFTDGNNAPNAVNMQATNLAGPTSSLTSQFHQQQNFQTPDAGAYQNGSSPNMGPPQYEQSVYMQAPGPAWNGHLPQQQQQPA------SPVYGAQSSGSLPPPPWEAQP-ADTSPVTGAQYPQSMQVTQMAVTPLQPPPSGMH-----PQGPNEQVGMYMQPITTGHLPAVNNQSAPSNQFLGMNPHAMQGGQYMGMYPQHMQAGPMASMYPQQMYGNQM----------AGYGYGPQQGTQFLEQRMHGLSVRDDNGLRNSSYQVSTTPYVPSGKPSKPEDKLFGDLVDISKFKPGKS 662
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QL66 ((TOM1-like protein 2 {ECO:0000313|EMBL:TKS10979.1}))
HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 430/685 (62.77%), Postives = 495/685 (72.26%), Query Frame = 0
Match: A0A4U5QL66 ((TOM1-like protein 2 {ECO:0000313|EMBL:TKS10979.1}))
HSP 1 Score: 771.155 bits (1990), Expect = 0.000e+0
Identity = 430/685 (62.77%), Postives = 495/685 (72.26%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKKPDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSENA-PVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDVT----ENTKPELTRAIVPVDAPLIDTGDT--KQNNGGSTSSAVAGKQSLQS----TPASNGTPSISANANTKMVDLLSGDD------DYSLALVPVGEPQPTVPVSQQNALALVDMFPQSN--------ASTPQTYPS---TPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVY-----GSLPPPPWEAPPEADNTPPSVNSYQPPMQSSSAGVAHSQPMPGNVNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTYQ-SASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVN+MVERATSD+LIGPDWAMNIEICDICNRDP QAKDVV+GIKK++ SRN +VQLL+LTLLETIIKNCGD VHMHVAEKDLLHEMV+I +KKPD HVKEKILVL+DTWQE FGGARARYPQYYAAYQELLR GAVFP RSE + P+FTPPQTQPLSSYPQNLR E Q AAE+ A+SEFPTLSLTEIQNARGIMDVLSEML+A+ P N+EG++QEVIVDLV+QCRTYK+RVVHLVNSTSDESLLCQGLALNDDLQR+L +HE ++SG E K E + A+V + APL+DTGD KQ +GGSTS++ AG Q+L P + P+ A ANTK VDLLSGDD SLALVPVGE Q T P+SQQNAL L DMF N +T P+ TPQ QQ QNFQ+ + +Y NG+ P+ P+Y QS+Y Q P WNG P QQQQ P SPVY GSLPPPPWEA P AD +P + Y MQ V HSQP+P ++ Q QP+GN Q GMY PI G+L NNQ+ NQ G P MQGGQ M M+PQ MQ G M M PQ +Y NQM GYGYG QQ Q+LEQ+M+G+SVR + GL +S+YQ S + YVPSGKPSKPEDKLFGDLVDI+KFKP K+
Sbjct: 1 MVNAMVERATSDMLIGPDWAMNIEICDICNRDPSQAKDVVKGIKKKLGSRNAKVQLLSLTLLETIIKNCGDFVHMHVAEKDLLHEMVRIAKKKPDLHVKEKILVLVDTWQEAFGGARARYPQYYAAYQELLRAGAVFPPRSERSTPLFTPPQTQPLSSYPQNLRNIEYPQGAAESPAESEFPTLSLTEIQNARGIMDVLSEMLNALDPRNQEGIRQEVIVDLVDQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLARHESISSGTPVPVQDEKLKAESSGALVDIGAPLVDTGDNKGKQPDGGSTSNSSAGAQTLNQLLLPAPPATNAPTTPAAANTK-VDLLSGDDYNSPKAATSLALVPVGEAQATTPLSQQNALVLFDMFSDGNNAPNAVNMQATNLAGPTNSLTPQFQQQQNFQTPDAGVYRNGNAPNMGSPRYEQSVYMQASGPAWNGHPP------QQQQLPASPVYGAQNGGSLPPPPWEAQP-ADTSPVTGAQYPQSMQVPQMAVTHSQPLPSGMHPQGPQPVGNEQ-VGMYMQPITTGHLPAVNNQSAPSNQFLGMNPHAMQGGQYMGMYPQPMQAGPMAVMYPQQVYGNQM----------AGYGYGLQQGTQYLEQRMNGVSVRYDNGLRNSSYQVSTTPYVPSGKPSKPEDKLFGDLVDISKFKPGKS 666
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4D915 ((target of Myb protein 1-like {ECO:0000313|RefSeq:XP_016509876.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 440/692 (63.58%), Postives = 501/692 (72.40%), Query Frame = 0
Match: A0A1S4D915 ((target of Myb protein 1-like {ECO:0000313|RefSeq:XP_016509876.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 440/692 (63.58%), Postives = 501/692 (72.40%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKK-PDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDVTENTKPELTRA--IVPVDAPLIDTGDTKQNNGGSTSSAVAGKQSLQSTPASNGTPSISANANTKMVDLLSGDDDY------SLALVPV-GEPQPTVPVSQQNALALVDMF-PQSNASTP----QTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVYG-----SLPPPPWEAPPEADNTPPSVNSYQPPMQSSSA--GVAHSQPMPGN-----------------VNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTY-QSASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMN+EICDICN DP QAKDVV+GIK+R+ S+NP+VQLLALTLLETI+KNCGDIVHMHVAEKDLLHEMVKIV+KK PD HVKEK+L+LIDTWQE FGG RARYPQ+Y AYQELLR+GAVFPQRSE +APVFTPPQT PL+SYPQNLR E GQEAAE+SA+ E+PTLSLTEIQNARGIMDVL+EMLSA+ PEN+EGLKQEVIVDLVEQCRTYK+RVVHLVNST+DESLLCQGLALND+LQR+L KHE +A+G + KP+ A +V VDAPLIDTGD++Q++ GSTSS G Q L P S +PS +AN K +DLLSGDD +LALVPV GEPQP PVSQQNALALVDMF P N+ +P Q +PS+PQ QQ Q+F S+ S+YPNGS P + Y Q N WNGQI QQQQ SPVYG S PPPPWEA A+N N + PMQ+S G H+ PM N V + Q G + GMYA I GG+ NQ M NQM G PQ MQGGQ M M PQQM GQMGYM PQ +Y NQM GYGYGY Q QN QFL Q+MSGLSVRD+G L++S+Y S SYVPSGKPSKPEDKLFGDLVDI+KFK +KT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNLEICDICNHDPAQAKDVVKGIKRRLGSKNPKVQLLALTLLETIVKNCGDIVHMHVAEKDLLHEMVKIVKKKQPDLHVKEKVLILIDTWQEAFGGPRARYPQFYGAYQELLRIGAVFPQRSERSAPVFTPPQTHPLASYPQNLRNPESGQEAAESSAEVEYPTLSLTEIQNARGIMDVLAEMLSALDPENKEGLKQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDELQRVLAKHEAIAAGTSVKVEKPKSDSAQPLVNVDAPLIDTGDSRQSDQGSTSSTSLGTQLLLPAPPSASSPSTTANVGPK-IDLLSGDDFSLPTAADALALVPVGGEPQPASPVSQQNALALVDMFSPPGNSQSPYSVGQKHPSSPQFQQ-QSFSSTLPSMYPNGSAPG--------TTYTQGSNAAWNGQISQQQQSS-------SPVYGGQSNSSFPPPPWEA-EAAENGQMVGNPHAQPMQNSQLLPGSPHALPMHNNQLMSGSLNALSMQNNQLVAANSQQLAGGSYAHGMYAQQITGGH-PAMMNQTMQSNQMVGLSPQPMQGGQLMGMFPQQMPSGQMGYMYPQQIYGNQMA--------GYGYGYAQPQNTQFLNQRMSGLSVRDDGVLNNSSYPVSTPSYVPSGKPSKPEDKLFGDLVDISKFKSSKT 665
BLAST of DCAR_003115 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7W2Q6 ((target of Myb protein 1-like isoform X1 {ECO:0000313|RefSeq:XP_009768540.1}))
HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 439/692 (63.44%), Postives = 501/692 (72.40%), Query Frame = 0
Match: A0A1U7W2Q6 ((target of Myb protein 1-like isoform X1 {ECO:0000313|RefSeq:XP_009768540.1}))
HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 439/692 (63.44%), Postives = 501/692 (72.40%), Query Frame = 0
Query: 1 MVNSMVERATSDLLIGPDWAMNIEICDICNRDPVQAKDVVRGIKKRINSRNPRVQLLALTLLETIIKNCGDIVHMHVAEKDLLHEMVKIVRKK-PDFHVKEKILVLIDTWQEVFGGARARYPQYYAAYQELLRMGAVFPQRSE-NAPVFTPPQTQPLSSYPQNLRTSEPGQEAAETSADSEFPTLSLTEIQNARGIMDVLSEMLSAIGPENREGLKQEVIVDLVEQCRTYKRRVVHLVNSTSDESLLCQGLALNDDLQRLLVKHEDLASGDVTENTKPELTRA--IVPVDAPLIDTGDTKQNNGGSTSSAVAGKQSLQSTPASNGTPSISANANTKMVDLLSGDDDY------SLALVPV-GEPQPTVPVSQQNALALVDMF-PQSNASTP----QTYPSTPQLQQPQNFQSSQSSIYPNGSIPSNAPPQYGQSLYAQDRNPVWNGQIPQQQQQQQQQQQPPSPVYG-----SLPPPPWEAPPEADNTPPSVNSYQPPMQSSSA--GVAHSQPMPGN-----------------VNSQVYQPMGNNQGTGMYAPPINGGNLSGFNNQNMMPNQMAGFYPQQMQGGQSMAMHPQQMQYGQMGYMQPQPMY-NQMPGYGQPTGYGYGYGYGQQQNNQFLEQKMSGLSVRDNGGLSSSTY-QSASSYVPSGKPSKPEDKLFGDLVDITKFKPAKT 650
MVNSMVERATSD+LIGPDWAMN+EICDICN DP QAKDVV+GIK+R+ S+NP+VQLLALTLLETI+KNCGDIVHMHVAEKDLLHEMVKIV+KK PD HVKEK+L+LIDTWQE FGG RARYPQ+Y AYQELLR+GAVFPQRSE +APVFTPPQT PL+SYPQNLR E GQEAAE+SA+ E+PTLSLTEIQNARGIMDVL+EMLSA+ PEN+EGLKQEVIVDLVEQCRTYK+RVVHLVNST+DESLLCQGLALND+LQR+L KHE +A+G + KP+ A +V VDAPLIDTGD++Q++ GSTSS G Q L P S +PS +AN K +DLLSGDD +LALVPV GEPQP PVSQQNALALVDMF P N+ +P Q +PS+PQ QQ Q+F S+ S+YPNGS P + Y Q N WNGQI QQQQ SPVYG S PPPPWEA A+N N + PMQ+S G H+ PM N V + Q G + GMYA I GG+ NQ + NQM G PQ MQGGQ M M PQQM GQMGYM PQ +Y NQM GYGYGY Q QN QFL Q+MSGLSVRD+G L++S+Y S SYVPSGKPSKPEDKLFGDLVDI+KFK +KT
Sbjct: 1 MVNSMVERATSDMLIGPDWAMNLEICDICNHDPAQAKDVVKGIKRRLGSKNPKVQLLALTLLETIVKNCGDIVHMHVAEKDLLHEMVKIVKKKQPDLHVKEKVLILIDTWQEAFGGPRARYPQFYGAYQELLRIGAVFPQRSERSAPVFTPPQTHPLASYPQNLRNPESGQEAAESSAEVEYPTLSLTEIQNARGIMDVLAEMLSALDPENKEGLKQEVIVDLVEQCRTYKQRVVHLVNSTTDESLLCQGLALNDELQRVLAKHEAIAAGTSVKVEKPKSDSAQPLVNVDAPLIDTGDSRQSDQGSTSSTSLGTQLLLPAPPSASSPSTTANVGPK-IDLLSGDDFSLPTAADALALVPVGGEPQPASPVSQQNALALVDMFSPPGNSQSPYSVGQKHPSSPQFQQ-QSFSSTLPSMYPNGSAPG--------TTYTQGSNAAWNGQISQQQQSS-------SPVYGGQSNSSFPPPPWEA-EAAENGQMVGNPHAQPMQNSQLLPGSPHALPMHNNQLMSGSLNALSMQNNQLVAANSQQLAGGSYAHGMYAQQITGGH-PAMMNQTIQSNQMVGLSPQPMQGGQLMGMFPQQMPSGQMGYMYPQQIYGNQMA--------GYGYGYAQPQNTQFLNQRMSGLSVRDDGVLNNSSYPVSTPSYVPSGKPSKPEDKLFGDLVDISKFKSSKT 665
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7APD5 | E-Value: 0.000e+0, PID: 69.54 | (Putative TOM1-like protein 2 {ECO:0000313|EMBL:MP... [more] |
| A0A2R6Q3A4 | E-Value: 0.000e+0, PID: 63.98 | (TOM1-like protein {ECO:0000313|EMBL:PSS01191.1})[more] |
| A0A5B7ASV0 | E-Value: 0.000e+0, PID: 69.05 | (Putative TOM1-like protein 2 {ECO:0000313|EMBL:MP... [more] |
| A0A5B7AS42 | E-Value: 0.000e+0, PID: 69.09 | (Putative TOM1-like protein 2 {ECO:0000313|EMBL:MP... [more] |
| B9RS40 | E-Value: 0.000e+0, PID: 63.58 | (Protein transporter, putative {ECO:0000313|EMBL:E... [more] |
| A0A6N2NFE7 | E-Value: 0.000e+0, PID: 62.97 | (Uncharacterized protein {ECO:0000313|EMBL:VFU6579... [more] |
| A0A837A0L2 | E-Value: 0.000e+0, PID: 62.83 | (TOM1 protein {ECO:0000313|EMBL:KAG5225375.1})[more] |
| A0A4U5QL66 | E-Value: 0.000e+0, PID: 62.77 | (TOM1-like protein 2 {ECO:0000313|EMBL:TKS10979.1}... [more] |
| A0A1S4D915 | E-Value: 0.000e+0, PID: 63.58 | (target of Myb protein 1-like {ECO:0000313|RefSeq:... [more] |
| A0A1U7W2Q6 | E-Value: 0.000e+0, PID: 63.44 | (target of Myb protein 1-like isoform X1 {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |