Resource Type:
Polypeptide
Name:
DCAR_003181
Identifier:
DCAR_003181.mRNA-protein
Sequence:
MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKN
GDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDR
ERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGK
GKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPE
RQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPE
RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYI
EFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGI
VPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKG
YGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDF
DDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPET
SLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSE
CLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIY
VDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRF
PDSR*
Sequence Length:
655
Sequence Checksum:
2826a1a1109499706c34b907ce4ae176
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003181, derives from mRNA, DCAR_003181. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZBQ0 ((Putative RNA-binding protein 39 {ECO:0000313|EMBL:MPA41510.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 436/660 (66.06%), Postives = 497/660 (75.30%), Query Frame = 0
Match: A0A5B6ZBQ0 ((Putative RNA-binding protein 39 {ECO:0000313|EMBL:MPA41510.1}))
HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 436/660 (66.06%), Postives = 497/660 (75.30%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDE------PDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP+KLKE N EE +KSE R SSKHKS++N DD HRSK KSG + D D ER G SRHRSS R+ E+SER R RS+R HKD + R+++ GK +DRD+D+E+ ++++D +R R + +++K++ +E+ +RS+SR ER DE DRE+ RD E +ERE E +E D RR KEK+EEV EPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYD+MSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS AGG GG I PYSGGARRLYVGNLH NI+EDQLRQVFE FG VELVQLP D TG+ KG+GFVQFARLEDARAA+SLNGQLEI G++IKVSA+TDQ G+QDVGAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SS+T LG P V++ G P T + G A VS LV PL Q VP LAGL AAG SVP V VPS D +GVPSECLLLKNMFDP SE+ EPDFDLDIK+DVQEE SK+G LKHIYVDKNTAGFVYLRF+NT++A+SAQRALHGRWFAGKMITATFM+PQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPQKLKETANGGEEPIKSEKNRSR-SSKHKSDENNDDFDHRSKHAKSGYQSFDRDGER-----------------------------------GLSRHRSSPREGERSERERHRSSRGHKDWD----REQRNGKERDRDRDKEKDGERDRDRDRRDRDREYGRERDKEREQEKEQPRRSRSRSERHGDERDGEKSQDRERSRDMEYKERESGREFRERDRESRRYKEKKEEVAEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDSMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGAGGLIGPYSGGARRLYVGNLHSNIKEDQLRQVFEPFGIVELVQLPTDPETGHCKGFGFVQFARLEDARAAQSLNGQLEIGGQSIKVSAVTDQTGLQDVGANAGDFDDDEGGGLSLNARSRALLMQKLDRSGTGSSITGSLGTPVVNSPGLVLPTTPILGAAPAVSPLVAPLVQPSVPALAGLPAAGLSVPAVTVPSVDTIGVPSECLLLKNMFDPKSEM----------EPDFDLDIKDDVQEECSKFGPLKHIYVDKNTAGFVYLRFENTQSAISAQRALHGRWFAGKMITATFMIPQNYEAKFPDSR 610
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BX02 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546122.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 424/663 (63.95%), Postives = 483/663 (72.85%), Query Frame = 0
Match: A0A5J5BX02 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546122.1}))
HSP 1 Score: 741.11 bits (1912), Expect = 0.000e+0
Identity = 424/663 (63.95%), Postives = 483/663 (72.85%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRER---------GADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP+K E N EE +KSE + +SSKHKS+ N D HRS+ KSG E D D ER V SRHRSS RD E+SER R RS+REH+DR R+++ GK +DRD+DRE+ G + E R + + + + + + ER ++ DRE+ RD+E +ERE+E E +E D RR KEK+EEV EPEVDPERDQRTVFAYQICLKADER VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS AGG GG I PYSGGARRLYVGNLH + +EDQLRQVFE FG+VELVQLP DQ TG KG+GFVQFARLEDARAA+SL+GQLEIAG +IK+SAITDQAG+QDVGAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SS+T LG P V++ G P + G A VS LV PLAQ VP LAGL AAG S+P V VPS D +GVPSECLLLKNMFDP SE +EPDFDLDIK +VQ+E SK+GTLKHIYVDKNTAGFVYLRF+NT++A+ +QRALHGRW+AGKMITATFMLPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENSEPQKSNETANGIEEPIKSEEKDWSRSSKHKSDDNDYDFDHRSRHPKSGFESFDIDGERDV-----------------------------------SRHRSSPRDGERSERERHRSSREHRDRN----REQRNGKERDRDRDREKTERGTPTGTGKTEIVIVNMEGRGIGERERERSRRSRSHSERHQGERDGERSQEAQDRERSRDREYKEREREREFRERDRESRRYKEKKEEVAEPEVDPERDQRTVFAYQICLKADERYVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAGGSGGLIGPYSGGARRLYVGNLHSHFKEDQLRQVFEPFGNVELVQLPTDQETGLCKGFGFVQFARLEDARAAQSLDGQLEIAGHSIKISAITDQAGLQDVGANAGDFDDDEGGGLSLNARSRALLMQKLDRSGTASSITGSLGTPVVNSPGLVLPSAPILGAAPAVSPLVAPLAQTSVPALAGLSAAGLSIPAVTVPSVDTIGVPSECLLLKNMFDPESE----------TEPDFDLDIKGEVQDECSKFGTLKHIYVDKNTAGFVYLRFENTQSAIGSQRALHGRWYAGKMITATFMLPQNYEAKFPDSR 614
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6Y7 ((RNA-binding protein like {ECO:0000313|EMBL:PSS21761.1}))
HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 435/667 (65.22%), Postives = 501/667 (75.11%), Query Frame = 0
Match: A0A2R6R6Y7 ((RNA-binding protein like {ECO:0000313|EMBL:PSS21761.1}))
HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 435/667 (65.22%), Postives = 501/667 (75.11%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRD----------QDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGP---GGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE +EP+KLKE ++ EET+KS E +SSKHKSEKN DD +HRSKR KSGD+ RDRE E+GSSRHRSS RD E+S+R R RS+REH+DR+K++ R+E+ GK + RD QDRE KE D +R +R DN+KE D+ + R RS S R++ + +R + R+ + RE E+E E +E D RR KEK+EEV EPE DPERDQRTVFAYQI LKADERDVY+FFSRAGKVRDVRLIMDRNSRRSKGVGYIEF+DAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTSAA GG I PYSGG RRLYVGNLH N++EDQLRQVFE FG+VELVQLP D TGN KG+GFVQFARLEDARAA+SLNGQLEIAGR IKVSA+TDQ GMQDVG N GDFDDDEGGGL+LNARSRA+LMQKLDRSG SV LG P V++ G + P T + G A +VS LV+PL QA VP LAGL AG +VP V VPS DI+GVPSECLLLKNMFDP K+ +EPDFDLDIKEDVQ+E SK+G+LKHIYV+KN+ GFVYLRF+NT+AA+SAQRALHGRWFAGKMITATFM+PQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENLEPQKLKESLDVGEETLKSGDKESIRSSKHKSEKNDDDLNHRSKRSKSGDD------------------------------SRDREI-----ERGSSRHRSSPRDGERSDRDRPRSSREHRDRDKERDREERNGKDRHRDRDRDKERVRDQDRE----KESDRDRNRRERDHDNEKEIDREREQSRRSRSHSERRREEPDRERSRDREYKEREMEREREHRERDRESRRHKEKKEEVAEPEADPERDQRTVFAYQISLKADERDVYDFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFFDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSAAAVAAAAGGLIGPYSGGVRRLYVGNLHLNMKEDQLRQVFEPFGTVELVQLPSDPETGNCKGFGFVQFARLEDARAAQSLNGQLEIAGRVIKVSAVTDQPGMQDVGTNAGDFDDDEGGGLALNARSRALLMQKLDRSGFAPSVAGPLGNPVVNSPGLALPTTPILGAAPSVSPLVSPLVQASVPALAGLPGAGLTVPPVAVPSVDILGVPSECLLLKNMFDP----------KLETEPDFDLDIKEDVQDECSKFGSLKHIYVEKNSDGFVYLRFENTQAAISAQRALHGRWFAGKMITATFMVPQNYEAKFPDSR 618
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A540MD30 ((Uncharacterized protein {ECO:0000313|EMBL:TQD96339.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 416/655 (63.51%), Postives = 480/655 (73.28%), Query Frame = 0
Match: A0A540MD30 ((Uncharacterized protein {ECO:0000313|EMBL:TQD96339.1}))
HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 416/655 (63.51%), Postives = 480/655 (73.28%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G ++ SKR KSGDE RER D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EKDK R S+ + D +RE+ R+ E +ER+KE++ +E + RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT S+ LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +E SEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHEEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKDKERSRRSRSHSERH---RSDRDERERSREVEHKERDKEKDLREREKENRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAE----------SEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B045 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535974.1}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 433/689 (62.84%), Postives = 502/689 (72.86%), Query Frame = 0
Match: A0A5J5B045 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8535974.1}))
HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 433/689 (62.84%), Postives = 502/689 (72.86%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGRQSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGK---------------DRDQDRER---------GADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQK----------DEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIV-PYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP+KLKE VN EE VK E + +SS+HK++ N D H+SK +SGDE RDR DRE+GSSRHRSS RD E+SER R RS+REH+DR++D+ R+E+ GK + +RD+DRER + +RE+ ++ DKEKD+ + + E + DE DRE+ RD+E REREK+ E +E D RR KEK+EEVVEPEVDPERDQRTVFAYQICLKADERDVY+FFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS A G GGG++ PYSGGARRLYVGNLH+NI+EDQLRQVFE FG+VELVQLP D TG+ KG+GF+QFARLEDARAA+SLNGQLEIAGR+IKVSA+TDQ GMQD+GAN GD DDDEGGGLSLNARSRA+LMQKLDRSGT SS+T L P VS+ G + P + G AS VS LV PL Q VP L GL AG S+P++ VPS D VGVPSECLLLKNMFDP K+ +EPDFDLDIKEDVQ+E SK+G LKHIYVDKN++GFVYLRF+NT++A++AQRALHGRWFAGKMITATF LPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPQKLKETVNGGEEHVKREDKDRSRSSRHKNDDNFD---HQSKLERSGDE------------------------------SRDR-----DRERGSSRHRSSPRDGERSERERHRSSREHRDRDRDRDREERNGKDRERDHDRDRREFDREYERDRDRERDPLRRSGSHSERHRDERDRERSRDREHRDKEKDRELRERDRESREREREPSRRSRSHSERHRDEQDRERSRDREYREREKDRELRERDRESRRYKEKKEEVVEPEVDPERDQRTVFAYQICLKADERDVYDFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVAVGAGGGLIGPYSGGARRLYVGNLHFNIKEDQLRQVFEPFGTVELVQLPTDPETGHCKGFGFIQFARLEDARAAQSLNGQLEIAGRSIKVSAVTDQTGMQDIGANAGDLDDDEGGGLSLNARSRALLMQKLDRSGTASSITGSLVNPVVSSPGLTLPTAPILGAASAVSPLVAPLVQPSVPALVGLPGAGLSIPSITVPSIDTVGVPSECLLLKNMFDP----------KLETEPDFDLDIKEDVQDECSKFGMLKHIYVDKNSSGFVYLRFENTQSAINAQRALHGRWFAGKMITATFQLPQNYEAKFPDSR 641
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5HCG7 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2620834.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 410/659 (62.22%), Postives = 472/659 (71.62%), Query Frame = 0
Match: A0A5N5HCG7 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2620834.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 410/659 (62.22%), Postives = 472/659 (71.62%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEP----DREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G D+ SKR KSGDE RER D RE+GSS HRS SRD EK R RS+R+H+ RE + + GK +DR++D+ER +++D R +D +KEK++ + +++ +EK ++K+LREREKE RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED +RQVF +FG VELVQLP D+ T N KG+GFVQFARLEDAR A SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGL+LNARSRA+LMQKLDRSGT S+ LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +E SEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHDEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSHHRSQSRDREKD---RHRSSRDHRGREDREREERN-GKERDRERDKERDPGRDRDRRERDREGDRDREKEKERLRQSRSHSERRRSDRDERERSREVEHKEKDKEKDLREREKEN---------RRHKDKKEEGTEPESDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHTNIKEDDIRQVFGAFGPVELVQLPHDE-TNNCKGFGFVQFARLEDARNALSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLALNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAE----------SEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5IAW4 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2636253.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 412/655 (62.90%), Postives = 477/655 (72.82%), Query Frame = 0
Match: A0A5N5IAW4 ((RNA-binding protein 39 {ECO:0000313|EMBL:KAB2636253.1}))
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 412/655 (62.90%), Postives = 477/655 (72.82%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G D+ SKR KSGDE RER D RE+GSS HRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EK+K R S+ + D +RE+ R+ E +ER+KE++ +E + RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGL+LNARSRA+LMQKLDRSGT S+ LG P V++ G S P + G A V SLV P+A +P AGL AG +P +PS D +GVPSECLLLKNMFDP +E SEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI ATFMLPQ YE++FP+SR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETANGGEETLKS-GEKGRSRSSKHKGDEKGHDEERHSKRSKSGDES----RERD---------------------------NDRHRERGSSHHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKEKERSRRSRSHSERH---RSDRDERERSREVEHKERDKEKDLREREKENRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLALNARSRAMLMQKLDRSGTAPSIAGPLGTPAVNSAGVSLPMAPILGAAPVVCSLVPPIAS--IPGFAGLGVAGLQIPAATLPSVDTIGVPSECLLLKNMFDPTAE----------SEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATFMLPQTYEAKFPESR 601
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4ADL6 ((RNA-binding protein 39 isoform X1 {ECO:0000313|RefSeq:XP_015893284.1}))
HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 410/658 (62.31%), Postives = 485/658 (73.71%), Query Frame = 0
Match: A0A6P4ADL6 ((RNA-binding protein 39 isoform X1 {ECO:0000313|RefSeq:XP_015893284.1}))
HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 410/658 (62.31%), Postives = 485/658 (73.71%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEP-EKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDRE-KDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPL-AGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP +K KE N +E VKS G + R +SSKHK++ ++ HR KR K D+ R H R RE GSSRHRS SRD ER R +S+REH+DRE ++K R+E+ G+ +D+++DR+R +++++ R K+ +KEKD+ R+RS+RS S ER + + + + RER+KE+E +E D RR KEK++E EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTT+ A G G I PYSGGARRLYVGNLH NI+E+ LRQVF +FG VELVQLPLD+ G KG+GFVQF+RLEDAR A SLNGQLEI GR IKVSA+TDQAGMQD+G N GDFDDD+GGGLSLNARSRA+LMQKLDRSGT+SS+ LG P VS+ G + + G A +S LV PL APVPP+ AGL AG VPT +VPS D +GVPSECLLLKNMFDP E +EP+FDLDIKEDVQ+E SK+G LKHIYVDKN+ GFVYLRF+NT+A+++AQRALHGRWFAGKMITAT+MLPQNYE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPLQKAKETANGSDEVVKSSGEKDRSRSSKHKNDAKDNEGEHRPKRSKI--------------DELREHNRR--------------------RESGSSRHRSQSRD---GERERHKSSREHRDREDREKDREERNGRDRDKEKDRDRDRERDRERRERDREGDKEREKEKDREMERDRSRRSLSHSERHRSDREERERSRDRDRERDKEKELRERDKESRRHKEKKDEATEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAVAAGTSGLIGPYSGGARRLYVGNLHSNIKEEDLRQVFGAFGPVELVQLPLDE-AGQCKGFGFVQFSRLEDARNALSLNGQLEIGGRTIKVSAVTDQAGMQDLGVNTGDFDDDDGGGLSLNARSRALLMQKLDRSGTSSSIAGSLGTP-VSSTGLALSTAPILGAAPVISPLVAPL--APVPPVFAGLGGAGLQVPTASVPSIDTIGVPSECLLLKNMFDPALE----------TEPNFDLDIKEDVQDECSKFGNLKHIYVDKNSVGFVYLRFENTQASMAAQRALHGRWFAGKMITATYMLPQNYEAQFPDSR 607
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A498JRX8 ((Uncharacterized protein {ECO:0000313|EMBL:RXH97677.1}))
HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0
Identity = 410/669 (61.29%), Postives = 470/669 (70.25%), Query Frame = 0
Match: A0A498JRX8 ((Uncharacterized protein {ECO:0000313|EMBL:RXH97677.1}))
HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0
Identity = 410/669 (61.29%), Postives = 470/669 (70.25%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDKGSGRERSQRSKSRP------ERQKDEPDREKHRDKELREREKEEESKEPDL----------MIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPD 652
MDFDEY+YLEKTVE EP K KE N EET+KS G +GR +SSKHK ++ G ++ SKR KSGDE RER D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+RD++R++ D +D +R +R + D D+EKDK R S+ ER ++ +E+ ++K+LREREKE + +RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED LRQVF +FG VELVQLPLD+ T N KG+GFVQFARLEDAR + SLNGQLEIAGR IKVSA+TDQAGMQD+GAN GDFDDDEGGGLSLNARSRA+LMQKLDRSGT S+ LG P V++ G S P + G A VSSLV P+A +P AGL AG +PT +PS D +GVPSECLLLKNMFDP +E SEP+FDLDIK+DVQEE SKYGTLKHIYVDKNTAG VYLRF+NT+AA+SA+ LHGRWFAGKMI AT P SR D
Sbjct: 29 MDFDEYDYLEKTVENPEPPKSKETANGGEETMKS-GEKGRSRSSKHKGDEKGHEEERHSKRSKSGDE----SRERD---------------------------NDRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERDRERDKERDPGRDRDRRERDREGDRDREKDKERSRRSRSHSERHRSDRDERERSREVEHKEREKEKDLREREKENRYARAIIRWSFWQLGQAQLRRHKDKKEEGTEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHSNIKEDDLRQVFGAFGPVELVQLPLDE-TNNCKGFGFVQFARLEDARNSLSLNGQLEIAGRVIKVSAVTDQAGMQDLGANAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTAPSIAGTLGTPAVNSAGVSLPMAPILGAAPVVSSLVPPIAS--IPGFAGLGVAGLQIPTATLPSVDTIGVPSECLLLKNMFDPTAE----------SEPNFDLDIKDDVQEECSKYGTLKHIYVDKNTAGHVYLRFENTQAAISARHVLHGRWFAGKMIEATCPRPTRLNSRKAD 646
BLAST of DCAR_003181 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N5FFD7 ((RNA-binding protein 39-like {ECO:0000313|EMBL:KAB2600521.1}))
HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 415/661 (62.78%), Postives = 475/661 (71.86%), Query Frame = 0
Match: A0A5N5FFD7 ((RNA-binding protein 39-like {ECO:0000313|EMBL:KAB2600521.1}))
HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 415/661 (62.78%), Postives = 475/661 (71.86%), Query Frame = 0
Query: 1 MDFDEYEYLEKTVETVEPEKLKEKVNTDEETVKSEGGEGR-QSSKHKSEKNGDDKSHRSKRVKSGDEKGDGDRERSVRDKERGHRGRERGERDKEKGGRDRERGDHDREKGSSRHRSSSRDVEKSERGRKRSTREHKDREKDKGRKEKIGKGKDRDQDRERGADKEKDCEREKRVLKKDNDKEKDK------GSGRERSQRSKSRPERQKDEPDREKHRDKELREREKEEESKEPDLMIRRPKEKREEVVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQTLLSQPVMVKPSEAEKNLVQSTTSAAGGPGGGIVPYSGGARRLYVGNLHYNIREDQLRQVFESFGSVELVQLPLDQVTGNGKGYGFVQFARLEDARAAESLNGQLEIAGRAIKVSAITDQAGMQDVGANPGDFDDDEGGGLSLNARSRAILMQKLDRSGTTSSVTSILGIPGVSTLGSSQPETSLPGTASTVSSLVNPLAQAPVPPLAGLLAAGSSVPTVNVPSFDIVGVPSECLLLKNMFDPNSEVVTAKFVKIPSEPDFDLDIKEDVQEESSKYGTLKHIYVDKNTAGFVYLRFDNTEAAVSAQRALHGRWFAGKMITATFMLPQNYESRFPDSR 654
MDFDEY+YLEKTVE EP K KE VN EE KS G +GR +SS+HK ++ G D+ SKR KSGDE ERG+ D RE+GSSRHRS SRD EK R RS+R+H+ RE + + GK+R+++R++ D ++D +R +R + D D+EKDK S ER + + ER ++ +EK ++K+LREREKE RR K+K+EE EPE DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQ LL QPVMVKPSEAEKNLVQSTTS GPGG I PYSGGARRLYVGNLH NI+ED +RQVF +FG VELVQLP D+ T N KG+GFVQFARLEDAR A SLNGQLEIAGR IKVSA+TDQAGMQD+G N GDFDDDEGGGLSLNARSRA+LMQKLDRSGT SS+ LG V++ G S P + G A +SSLV P+ VP AGL AG +PT +PS D VGVPSECLLLKNMFDP +E SEPDFDLDIK+DVQEE SKYG LKHIYVDKNTAG VYLRF+ EAA++A+ LHGRWFAGKMI ATFMLPQ YE++FPDSR
Sbjct: 1 MDFDEYDYLEKTVENPEPPKSKETVNGGEEASKS-GEKGRSRSSRHKGDEKGHDEERHSKRSKSGDES-----------HERGN--------------------DRHRERGSSRHRSQSRDREKD---RHRSSRDHRGREDREREERN---GKERNRERDKERDPDRDRDRRERDREGDRDREKDKERLRQSRSHSERRRSDRDERERSREVEHKEKDKEKDLREREKEN---------RRHKDKKEEGTEPESDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVVTGPGGMIGPYSGGARRLYVGNLHTNIKEDDIRQVFGAFGPVELVQLPHDE-TNNCKGFGFVQFARLEDARNALSLNGQLEIAGRVIKVSAVTDQAGMQDLGVNAGDFDDDEGGGLSLNARSRAMLMQKLDRSGTASSIGP-LGTTAVNSAGVSLPMAPILGAAPGISSLVPPITS--VPGFAGLGIAGLQIPTATLPSVDTVGVPSECLLLKNMFDPTAE----------SEPDFDLDIKDDVQEECSKYGKLKHIYVDKNTAGHVYLRFETIEAALNARHVLHGRWFAGKMIEATFMLPQTYEAKFPDSR 600
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZBQ0 | E-Value: 0.000e+0, PID: 66.06 | (Putative RNA-binding protein 39 {ECO:0000313|EMBL... [more] |
| A0A5J5BX02 | E-Value: 0.000e+0, PID: 63.95 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
| A0A2R6R6Y7 | E-Value: 0.000e+0, PID: 65.22 | (RNA-binding protein like {ECO:0000313|EMBL:PSS217... [more] |
| A0A540MD30 | E-Value: 0.000e+0, PID: 63.51 | (Uncharacterized protein {ECO:0000313|EMBL:TQD9633... [more] |
| A0A5J5B045 | E-Value: 0.000e+0, PID: 62.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8535... [more] |
| A0A5N5HCG7 | E-Value: 0.000e+0, PID: 62.22 | (RNA-binding protein 39 {ECO:0000313|EMBL:KAB26208... [more] |
| A0A5N5IAW4 | E-Value: 0.000e+0, PID: 62.90 | (RNA-binding protein 39 {ECO:0000313|EMBL:KAB26362... [more] |
| A0A6P4ADL6 | E-Value: 0.000e+0, PID: 62.31 | (RNA-binding protein 39 isoform X1 {ECO:0000313|Re... [more] |
| A0A498JRX8 | E-Value: 0.000e+0, PID: 61.29 | (Uncharacterized protein {ECO:0000313|EMBL:RXH9767... [more] |
| A0A5N5FFD7 | E-Value: 0.000e+0, PID: 62.78 | (RNA-binding protein 39-like {ECO:0000313|EMBL:KAB... [more] |
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| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |