Resource Type:
Polypeptide
Name:
DCAR_003422
Identifier:
DCAR_003422.mRNA-protein
Sequence:
MNERSLSERRLREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSS
INRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFT
PFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRS
AIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLA
FLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGY
TWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPR
EMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRN
RLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEK
VVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEE
VTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQ
IFSNILQIYVDDEQRIITNIREGRVNLHVKQLESDITFHIGKREAELATQ
VNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLA
ASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGA
VLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQ
GFYLLAKLLLEAGASVLLKDRYYLVSCFNNIDELFRLMCTIPIKFSFMMT
ANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPN
SFIVSEDAGKLLDVNMISDGQKLYLINER*
Sequence Length:
830
Sequence Checksum:
fcb655ca60ac9b00c6d442bbe46547e8
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_003422, derives from mRNA, DCAR_003422. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GNW1 ((K+-channel ERG {ECO:0000313|EMBL:PIN06938.1}))
HSP 1 Score: 1113.21 bits (2878), Expect = 0.000e+0
Identity = 539/826 (65.25%), Postives = 660/826 (79.90%), Query Frame = 0
Match: A0A2G9GNW1 ((K+-channel ERG {ECO:0000313|EMBL:PIN06938.1}))
HSP 1 Score: 1113.21 bits (2878), Expect = 0.000e+0
Identity = 539/826 (65.25%), Postives = 660/826 (79.90%), Query Frame = 0
Query: 19 EFEIQELRDEIRSARHNRYMSGLSQDLQLGSS---INRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRYYLVS------CFN-NIDELFR-----LMCTIPIKFSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
E+ ++ LRD I+S+R +R+ + +L L S+ RRR L D SQ +HP N+WY+VWEKFI+++AIYSSFFTP EFGFFRGLP+ LFLLD+ GQVAF+ D++LQFFV YRDS +YKM+YNR+ IALRYLKSHF D L C+PWDI+YKA G EEVR+LLWIRL+R RKV AF K+EKDIRINYLF RI+KL+ VE+YCTHTAACIFYYLAT++P +KEGYTWIGSL+LGD+SYS FREI+LWKRY TSLYF+I+TMATVGYGDIHAVN REMIF+MIYVS DM+LGAYLIGN+TALIVKGSKTERYRDKM+D+ KY++RNRLGK++R IK HLRLQYE SYTD+AVL+D+PISIRA+ISQ+LYK YVE V LFK CS++FISQIV RV EEFF PGE+IMEQG AVD +Y VCHGVLEEV + ++G+E+ V+LL+PSSLFG +SILCNIPQPYT+RV +LCRLLR+DKQ FSNIL+IY D +R++TN+ EG+ NL VKQLESDI FHIGK+EAELA +VN+AAY+GDL QLK LIR+GADPNKKDY GRS L HLAASRG+EDIT+FLIQE VDIN DNFGNTPLFEAIK G +V SLL KEGA+LK+++AG+FLCT V+RGD D ++R LS+G+DPNSKDYDHRTPLH+AASQG +L+AKLLLEAGASV KDRY C N N+ L + +P ++ + +KKCTVFPFHP +P + R+GV++WVP T+ ELI+ A+++L S I+SED GK+L+V++I+DG+KLY+INE
Sbjct: 30 EYVVENLRDRIKSSRGSRF-ELIENELGLDSTQPRFTRRR------VINGLKDLSQGLFIHPENRWYKVWEKFILIWAIYSSFFTPMEFGFFRGLPEKLFLLDIAGQVAFLVDIILQFFVTYRDSHSYKMVYNRNLIALRYLKSHFFPDLLACMPWDIIYKAVGRKEEVRYLLWIRLTRVRKVTAFFQKMEKDIRINYLFTRIVKLIAVELYCTHTAACIFYYLATTLPEEKEGYTWIGSLKLGDYSYSRFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTERYRDKMTDLIKYMNRNRLGKELRNQIKGHLRLQYESSYTDAAVLQDIPISIRAQISQSLYKSYVENVPLFKGCSSDFISQIVTRVHEEFFLPGEVIMEQGSAVDQLYFVCHGVLEEVGIAEDGSEDTVSLLEPSSLFGEISILCNIPQPYTVRVCELCRLLRIDKQSFSNILEIYFHDGRRVLTNLLEGKESNLRVKQLESDIAFHIGKQEAELALRVNNAAYYGDLHQLKSLIRSGADPNKKDYDGRSAL-------------HLAASRGYEDITLFLIQEGVDINAEDNFGNTPLFEAIKSGQDRVTSLLSKEGALLKIENAGSFLCTVVSRGDTDLVRRVLSNGIDPNSKDYDHRTPLHIAASQGLFLMAKLLLEAGASVFSKDRYGNTPMDEGRICGNKNMITLLEEAKMAQLSEVPHSSQELIADKIHSKKCTVFPFHPWRPAEGRRHGVVMWVPNTMEELIKAASEKLELPEGSCILSEDGGKILEVDIITDGEKLYMINE 835
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: W9S152 ((Potassium channel SKOR {ECO:0000313|EMBL:EXC20599.1}))
HSP 1 Score: 1107.05 bits (2862), Expect = 0.000e+0
Identity = 533/818 (65.16%), Postives = 656/818 (80.20%), Query Frame = 0
Match: W9S152 ((Potassium channel SKOR {ECO:0000313|EMBL:EXC20599.1}))
HSP 1 Score: 1107.05 bits (2862), Expect = 0.000e+0
Identity = 533/818 (65.16%), Postives = 656/818 (80.20%), Query Frame = 0
Query: 22 IQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY--------YLVSCFNNIDELFRLMCTIPIKFSFMM--TANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
+Q++RD I+S+R +R+ + + +L L S+I + S GN + D S+D ++P+NKWYRVW+KFI+++A+YSSFFTP EFGFFRGL ++LF+LD+VGQ+AF+ D+VLQFFVAYRDS TY+M+ R+ IALRYLKSHF++D LGCLPWDI+YK G E VR+LLWIRLSR RKV AF LEKDIRINYLF RI+KL++VE+YCTHTAACIFYYLAT++PA KEGYTWIGSL+LGD+SYS+FREI+LWKRY+TSLYF+I+TMATVGYGDIHAVN REMIF+MIYVS DM+LGAYLIGN+TALIVKGSKTE++RDKM+D+ KY++RNRLG+DIR IK H+RLQYE SYTD+AVL+D+PISIRAKISQ LY P +E V LFK CSAEFI+QIV +V EEFF PGE+IMEQG+ VD +Y VC G LEEV + ++G+EE ++ LQP S FG++SILCNIPQPYT+RV +LCRLLR+DKQ F+NIL IY D ++I+ N+ EG+ N+ VKQLESDITFHIGK+EAELA +VNSAAYHGDL QLKGLIRAGADPNK DY GRSPL HLAASRG+EDIT+FLIQE VD+N D+FGNTPL EA+K GH +V+SLL+KEGA LK+D+AG+FLCT V+RGD DF+KR L++G+DPNSKDYDHRTPLH+AAS+G YL+AKLLLEAGASV KDR+ + N I L + F + KKCTVFPFHP P + R G++LWVP TI +LI+ AA QL S S I+SEDAGK+LDV++I+DGQKLYL+ E
Sbjct: 48 LQDIRDRIKSSRGSRF-NLIENELGLASTIRSKFSRGN--VINGIKDLSKDLVIYPDNKWYRVWQKFILIWAVYSSFFTPLEFGFFRGLNEDLFVLDIVGQIAFLVDIVLQFFVAYRDSQTYRMVCKRNPIALRYLKSHFVIDLLGCLPWDIIYKTCGRKEAVRYLLWIRLSRVRKVTAFFQNLEKDIRINYLFTRIVKLIVVELYCTHTAACIFYYLATTLPASKEGYTWIGSLKLGDYSYSHFREIDLWKRYMTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGRDIRNQIKGHVRLQYESSYTDAAVLQDIPISIRAKISQTLYLPSIENVCLFKGCSAEFINQIVIKVHEEFFLPGEVIMEQGNVVDQLYFVCQGALEEVGIGEDGSEETISSLQPKSSFGIISILCNIPQPYTVRVCELCRLLRIDKQSFTNILDIYFHDGRKILNNLLEGKESNIRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPL-------------HLAASRGYEDITLFLIQEGVDVNTKDSFGNTPLLEALKNGHDRVSSLLVKEGASLKIDNAGSFLCTAVSRGDSDFLKRILANGIDPNSKDYDHRTPLHIAASEGLYLMAKLLLEAGASVFSKDRWGNTPLDEGRMCGNKNLIKLLEDAKAAQLLDFPYHAGDKEKAHQKKCTVFPFHPWDPKEDRRPGIVLWVPNTIEDLIKKAADQLEISSVSCILSEDAGKILDVDLINDGQKLYLVGE 849
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314KXX1 ((Potassium channel skor {ECO:0000313|EMBL:OIT34005.1}))
HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0
Identity = 533/824 (64.68%), Postives = 658/824 (79.85%), Query Frame = 0
Match: A0A314KXX1 ((Potassium channel skor {ECO:0000313|EMBL:OIT34005.1}))
HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0
Identity = 533/824 (64.68%), Postives = 658/824 (79.85%), Query Frame = 0
Query: 19 EFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRL-FDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFRLMCTIPIK----FSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINER 829
E+E++++RD+I S+R +R+ L +D LG ++ RRR +RL + SQ +HP N+WYR+WE FI++++IYSSFFTP EF FF GLP+ LFLLD+ GQ+ F+ D+VLQFFVAYRDS TYKM+Y R+ IALRYLKSHFI+DFL C+PWDI+YKA GS EEVR+LLWIRLSR R++ F K+EKDIRINYLF RI+KL+ VE+YCTHTAACIFYYLAT++ +EGYTWIGSL+LGD+SYSNFR+I+LW RY TS+YF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+L AYLIGN+TALIVKGSKTERYRDKM+D+ KY++RNRLG+DIR IK HLRLQYE +YTD+AVL+D+PISIRAKISQ+LY+ Y+E V LFK CS+EFISQ+V RV EEFF PGE+IMEQG+ VD +Y VCHGVLEEV + +G+EE VALL+P+S FG +SI+CNIPQPYT+RV +LCRLLR+DKQ FSNIL+IY D +RI++N+ +G+ NL VKQLESDI FHIGK EAELA +VNSAAYHGDL QLK LIRAGADPNKKDY GRSPL HLAASRG+EDIT+FLIQE VDIN+ D FGNTPL EAIK GH +VASLL+KEGA+LK+++AG+FLC +A+GD D ++R LS+GVDPNSKDYD RTPLHVAASQG Y +AKLLL AGASV KDR+ VS + L + + M+ L +KCTVFPFHP + D ++GV++W+P+TI EL+ TA+++LNF +S I+SEDAGK+LD++MI DGQKLYLIN++
Sbjct: 18 EYEVEDVRDKIESSRGSRFQ--LIED-DLGLNLFRRR-------ISRLKINLSQGFIIHPENRWYRMWENFILIWSIYSSFFTPMEFAFFNGLPRKLFLLDICGQIVFLVDIVLQFFVAYRDSQTYKMVYKRTPIALRYLKSHFILDFLSCMPWDIIYKAVGSKEEVRYLLWIRLSRARRITYFFQKMEKDIRINYLFTRIVKLITVELYCTHTAACIFYYLATTLSEQQEGYTWIGSLKLGDYSYSNFRDIDLWTRYTTSMYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILSAYLIGNMTALIVKGSKTERYRDKMTDLLKYMNRNRLGRDIRNQIKGHLRLQYESAYTDAAVLQDIPISIRAKISQSLYQSYIENVPLFKGCSSEFISQVVTRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAKDGSEETVALLEPNSSFGDISIVCNIPQPYTVRVCELCRLLRIDKQSFSNILEIYFHDGRRILSNLLQGKESNLRVKQLESDIAFHIGKHEAELALKVNSAAYHGDLHQLKSLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDITLFLIQEGVDINVPDKFGNTPLLEAIKSGHDRVASLLVKEGALLKIENAGSFLCMVIAKGDSDLLRRLLSNGVDPNSKDYDQRTPLHVAASQGLYSMAKLLLGAGASVFTKDRWGNTPVDEARVSGNKQMIGLLEEAKSAQLSEFPDVPHEMSEKLRPRKCTVFPFHPWESKDVRKHGVVMWIPQTIEELVTTASEKLNFPSDSCILSEDAGKILDIDMIVDGQKLYLINDQ 818
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5PLK8 ((Uncharacterized protein {ECO:0000313|EMBL:GAY53234.1}))
HSP 1 Score: 1100.12 bits (2844), Expect = 0.000e+0
Identity = 532/831 (64.02%), Postives = 657/831 (79.06%), Query Frame = 0
Match: A0A2H5PLK8 ((Uncharacterized protein {ECO:0000313|EMBL:GAY53234.1}))
HSP 1 Score: 1100.12 bits (2844), Expect = 0.000e+0
Identity = 532/831 (64.02%), Postives = 657/831 (79.06%), Query Frame = 0
Query: 11 LREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY--------YLVSCFNNIDELFRLMCTIPIKFSF----MMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
+ + +++ E+E+ +LR+ +S+R +R+ L + Q G RR+ + S T + FS+ +HP+N+WYR W KFI+++A+YSSFFTP EF FFRGLP+NLF+LD+ GQ+AF+ D++LQFF+AYRDS TY+M+Y R+ IALRYLKS FI+D L CLPWD++YKA G EEVR+LLWIRL R RKV+ F KLEKDIRINYLF RI+KL+ VEIYCTHTAACIFYYLAT++P +KEGYTWIGSL+LGD+SYSNFR+I++W RY TS+YF+I+TMATVGYGDIHAVN REMIF+MIYVS DMVLGAYLIGN+TALIVKGSKTE++RDKM+D+ KY++RNRLG+DIR IK H+RLQYE SYT+++VL D+P+SIRAKISQ LY PY+EKV LFK CS+EFI+QIV R+ EEFF PGE+IMEQG+ VD +Y VCHGVLEEV V ++G+EE V+ LQP++ FG VSILCNIPQPYT+RV +L RLLR+DKQ F+NIL+IY D ++++TN+ EG+ NL +KQLESDITFHIGK EAELA +VNSAAYHGDL QLKGLIRAGADPNK DY GRSPL HLAASRG+EDIT+FLIQ+ VD+NI D FGNTP+ EAIKGGH VASLL+KEGA L VDDAG+FLCT VARGD DF+KR LS+GVDPNS+DYDHRTPLH+AAS+G YL+AKLLLEAGASV KDR+ + N I L CT +F + M+ P +KC VFPFHP + + RYG++LWVP I ELI+ A QL ++SED GK+LDV+MI+DGQKLYLI+E
Sbjct: 1 MGDSDKEGEYEVDDLREGFKSSRGSRF--NLIAN-QFGFGFGFRRNFSSQSLITGIRHFSKGSVIHPDNRWYRTWTKFILIWALYSSFFTPMEFAFFRGLPENLFILDIAGQIAFLIDIILQFFLAYRDSQTYRMVYKRTPIALRYLKSSFIIDLLSCLPWDVIYKACGRKEEVRYLLWIRLYRVRKVIEFFQKLEKDIRINYLFTRIIKLIAVEIYCTHTAACIFYYLATTLPHEKEGYTWIGSLKLGDYSYSNFRDIDIWTRYTTSMYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGRDIRDQIKGHVRLQYESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNNSFGEVSILCNIPQPYTVRVCELSRLLRIDKQSFTNILEIYFSDGRKVLTNLLEGKESNLRIKQLESDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPL-------------HLAASRGYEDITLFLIQKGVDVNIKDKFGNTPMLEAIKGGHDGVASLLVKEGASLNVDDAGSFLCTVVARGDSDFLKRVLSNGVDPNSRDYDHRTPLHIAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYGSQGMIDKKHP-RKCIVFPFHPWEKVHR-RYGIVLWVPHNIEELIKFAVDQLGVPGGHLMLSEDGGKILDVDMINDGQKLYLISE 813
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7V8F0 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_009762658.1}))
HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 667/834 (79.98%), Query Frame = 0
Match: A0A1U7V8F0 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_009762658.1}))
HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 667/834 (79.98%), Query Frame = 0
Query: 8 ERRLREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFR-----LMCTIPIKFSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
ER + + E+++++L +S+R +R + + ++L L SS + R S N + SQ ++P+++WY++WEKFI+++AIYSSFFTP EF FF+GLP+ LFLLD+ GQ+AF+ D+V+QFFVAYRDS TYKM++ R+ IALRYLK+HFI+DFL C+PWD +YKA+G E +R+LLWIRLSR R+V F K+EKDIRINYLF RILKL++VE+YCTHTAACIFY+LAT++P +KEGYTWIGSL LGD+SYS+FREI+LW+RY+TSLYF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+LGAYLIGN+TALIVKGSKT RYRDKM+D+ Y++RNRLG+DIR IKDHLRLQYE +YTD+AVL+DLPISIRAKISQ LY+ +E + LF++CS+EFISQIV RVCEEFF PGE+IMEQG VD +Y VCHGVLEE+ + ++G+EE VALL+P+S FG +SILCNIPQPYT+RV +LCRL+R+DKQ FSNIL+IY D +RI+TN+ EG+ +L VKQ+ESDITFHIGK+EAELA +VNSAAYHGDL QLKGLIRAGADPNKKDY GRSPL HLAASRG+EDI++FLIQE VD+N DNF TPLFEAIK GH +VASLL+KEGA LK+++AG+FLC VA+GD D ++R LS+G+DPNSKDYDHRTPLHVAASQG + +A+LLL AGASV KDR+ +S N + +L + PI ++ + +KCTVFPFHP +P D ++GV+LW+P+++ ELI TA++QLNF S I+SEDAGK+LD+ +ISDGQKLYLI+E
Sbjct: 11 ERNISRRDSGAEYKMEDL---TKSSRSSRRYALMEKELGLDSSTHSRFSREN--VINGIKGLSQGSVIYPDDRWYKIWEKFILIWAIYSSFFTPMEFAFFKGLPRKLFLLDICGQIAFLVDIVVQFFVAYRDSQTYKMVHKRTPIALRYLKTHFILDFLSCMPWDNIYKAAGKKEGLRYLLWIRLSRVRRVNDFFQKMEKDIRINYLFTRILKLIVVELYCTHTAACIFYFLATTLPEEKEGYTWIGSLTLGDYSYSHFREIDLWRRYITSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTVRYRDKMTDLMNYMNRNRLGRDIRTQIKDHLRLQYESAYTDAAVLQDLPISIRAKISQTLYQSCIENIPLFRDCSSEFISQIVTRVCEEFFLPGEVIMEQGHVVDQLYFVCHGVLEEIGIGNDGSEERVALLEPNSSFGEISILCNIPQPYTVRVCELCRLIRIDKQSFSNILEIYFHDGRRILTNLLEGKDSDLRVKQVESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDISLFLIQEGVDLNASDNFDTTPLFEAIKNGHDRVASLLVKEGAFLKIENAGSFLCMLVAKGDSDLLRRLLSNGIDPNSKDYDHRTPLHVAASQGLFAMARLLLGAGASVFSKDRWGNTPFDEARLSGNNQLTKLLEEAKSAQISEFPIA-PHEISEKMHPQKCTVFPFHPWEPKDLRKHGVVLWIPKSMEELITTASEQLNFPSGSCILSEDAGKILDIGLISDGQKLYLISE 825
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3XFN7 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_016438682.1}))
HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 667/834 (79.98%), Query Frame = 0
Match: A0A1S3XFN7 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_016438682.1}))
HSP 1 Score: 1098.19 bits (2839), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 667/834 (79.98%), Query Frame = 0
Query: 8 ERRLREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFR-----LMCTIPIKFSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
ER + + E+++++L +S+R +R + + ++L L SS + R S N + SQ ++P+++WY++WEKFI+++AIYSSFFTP EF FF+GLP+ LFLLD+ GQ+AF+ D+V+QFFVAYRDS TYKM++ R+ IALRYLK+HFI+DFL C+PWD +YKA+G E +R+LLWIRLSR R+V F K+EKDIRINYLF RILKL++VE+YCTHTAACIFY+LAT++P +KEGYTWIGSL LGD+SYS+FREI+LW+RY+TSLYF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+LGAYLIGN+TALIVKGSKT RYRDKM+D+ Y++RNRLG+DIR IKDHLRLQYE +YTD+AVL+DLPISIRAKISQ LY+ +E + LF++CS+EFISQIV RVCEEFF PGE+IMEQG VD +Y VCHGVLEE+ + ++G+EE VALL+P+S FG +SILCNIPQPYT+RV +LCRL+R+DKQ FSNIL+IY D +RI+TN+ EG+ +L VKQ+ESDITFHIGK+EAELA +VNSAAYHGDL QLKGLIRAGADPNKKDY GRSPL HLAASRG+EDI++FLIQE VD+N DNF TPLFEAIK GH +VASLL+KEGA LK+++AG+FLC VA+GD D ++R LS+G+DPNSKDYDHRTPLHVAASQG + +A+LLL AGASV KDR+ +S N + +L + PI ++ + +KCTVFPFHP +P D ++GV+LW+P+++ ELI TA++QLNF S I+SEDAGK+LD+ +ISDGQKLYLI+E
Sbjct: 11 ERNISRRDSGAEYKMEDL---TKSSRSSRRYALMEKELGLDSSTHSRFSREN--VINGIKGLSQGSVIYPDDRWYKIWEKFILIWAIYSSFFTPMEFAFFKGLPRKLFLLDICGQIAFLVDIVVQFFVAYRDSQTYKMVHKRTPIALRYLKTHFILDFLSCMPWDNIYKAAGKKEGLRYLLWIRLSRVRRVNDFFQKMEKDIRINYLFTRILKLIVVELYCTHTAACIFYFLATTLPEEKEGYTWIGSLTLGDYSYSHFREIDLWRRYITSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTVRYRDKMTDLMNYMNRNRLGRDIRTQIKDHLRLQYESAYTDAAVLQDLPISIRAKISQTLYQSCIENIPLFRDCSSEFISQIVTRVCEEFFLPGEVIMEQGHVVDQLYFVCHGVLEEIGIGNDGSEERVALLEPNSSFGEISILCNIPQPYTVRVCELCRLIRIDKQSFSNILEIYFHDGRRILTNLLEGKDSDLRVKQVESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDISLFLIQEGVDLNASDNFDTTPLFEAIKNGHDRVASLLVKEGAFLKIENAGSFLCMLVAKGDSDLLRRLLSNGIDPNSKDYDHRTPLHVAASQGLFAMARLLLGAGASVFSKDRWGNTPFDEARLSGNNQLTKLLEEAKSAQISEFPIA-PHEISEKMHPQKCTVFPFHPWEPKDLRKHGVVLWIPKSMEELITTASEQLNFPSGSCILSEDAGKILDIGLISDGQKLYLISE 825
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1B0P5 ((Potassium channel TORK1 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034446}))
HSP 1 Score: 1096.65 bits (2835), Expect = 0.000e+0
Identity = 530/824 (64.32%), Postives = 653/824 (79.25%), Query Frame = 0
Match: M1B0P5 ((Potassium channel TORK1 {ECO:0000313|EnsemblPlants:PGSC0003DMT400034446}))
HSP 1 Score: 1096.65 bits (2835), Expect = 0.000e+0
Identity = 530/824 (64.32%), Postives = 653/824 (79.25%), Query Frame = 0
Query: 19 EFEIQELRDEIRSARHNRYMSGLSQDLQLGSSI--NRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFRLMCTIPIK----FSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
E+EI+++RD++ S+R +R+ LS++ +G + RRR +S L D SQ +HP+N+WYR+WE FI++++IYSSFFTP EF FF GLP+ LFLLD+ GQ+ F+ D+V+QF VAYRDS TYKM+Y R+ IALRYLKSHFI+DFLGC+PWDI+YKA GS EEVR+LLWIRLSR R++ F K+EKDIRINYLF RI+KL+ VE+YCTHTAACIFY+LAT++ +EGYTWIGSL+LGD+SYSNFR+I+LW RY TS+YF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+L AYLIGN+TALIVKGSKTERYRDKM+D+ KY++RNRLG+DIR IK HLRLQYE +YTD+AVL+D+PISIRAKISQNLY+ Y+E V LFK CS+EFISQ+V RV EEFF PGE+IMEQG+ VD +Y VCHGVLEEV + NG+EE V+LL+P+S FG +SI+CNIPQPYT+RV +LCRLLR+DKQ F+NIL+IY D +RI++N+ +G+ NL VKQLESDI HIGK EAELA +VNSAAYHGDL QLK LIRAGADPNKKDY GRSPL HLAASRG+EDIT+FLIQE VDIN D FGNTPL EAIK GH +VASLL+KEGA+L +++AG+FLC +A+GD D ++R LS+GVDPN+KDYD RTPLHVAASQG Y +AKLLL AGASV KDR+ VS + L + + ++ L +KCTVFPFHP + D ++GV+LW+P+TI EL+ TA++QL F S I+SEDAGK+LDV+MI DGQKLYLINE
Sbjct: 18 EYEIEDMRDKMESSRGSRFK--LSENDLVGVDLLSRRRRKISRESLLNGLKDLSQGFVIHPDNRWYRMWENFILIWSIYSSFFTPMEFAFFNGLPRKLFLLDICGQIVFLVDIVIQFSVAYRDSQTYKMVYKRTPIALRYLKSHFIMDFLGCMPWDIIYKAVGSKEEVRYLLWIRLSRARRITYFFQKMEKDIRINYLFTRIVKLITVELYCTHTAACIFYFLATTLSEQQEGYTWIGSLKLGDYSYSNFRDIDLWTRYTTSMYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILSAYLIGNMTALIVKGSKTERYRDKMTDLLKYMNRNRLGRDIRNQIKGHLRLQYESAYTDAAVLQDIPISIRAKISQNLYQSYIENVPLFKGCSSEFISQVVTRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAKNGSEETVSLLEPNSSFGDISIVCNIPQPYTVRVCELCRLLRIDKQSFANILEIYFHDGRRILSNLLQGKESNLRVKQLESDIALHIGKHEAELALKVNSAAYHGDLHQLKSLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDITLFLIQEGVDINAPDKFGNTPLLEAIKSGHDRVASLLVKEGALLNIENAGSFLCMVIAKGDSDLLRRLLSNGVDPNNKDYDQRTPLHVAASQGQYSMAKLLLGAGASVFSKDRWGNTPVDEARVSGNKQMISLLEEAKSAQLSEFPDVPHEISDKLRPRKCTVFPFHPWESKDVRKHGVVLWIPQTIEELVITASEQLGFPSGSCILSEDAGKILDVDMIVDGQKLYLINE 826
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q5NT78 ((Potassium channel TORK1 {ECO:0000313|EMBL:BAD81036.1}))
HSP 1 Score: 1095.88 bits (2833), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 666/834 (79.86%), Query Frame = 0
Match: Q5NT78 ((Potassium channel TORK1 {ECO:0000313|EMBL:BAD81036.1}))
HSP 1 Score: 1095.88 bits (2833), Expect = 0.000e+0
Identity = 527/834 (63.19%), Postives = 666/834 (79.86%), Query Frame = 0
Query: 8 ERRLREEEEDNEFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRLFDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFR-----LMCTIPIKFSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINE 828
ER + + E+++++L +S+R +R + + ++L L SS + R S N + SQ ++P+++WY++WEKFI+++AIYSSFFTP EF FF+GLP+ LFLLD+ GQ+AF+ D+V+QFFVAYRDS TYKM++ R+ IALRYLK+HFI+DFL C+PWD +YKA+G E +R+LLWIRLSR R+V F K+EKDIRINYLF RILKL++VE+YCTHTAACIFY+LAT++P +KEGYTWIGSL LGD+SYS+FREI+LW+RY+TSLYF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+LGAYLIGN+TALIVKGSKT RYRDKM+D+ Y++RNRLG+DIR IKDHLRLQYE +YTD+AVL+DLPISIRAKISQ LY+ +E + LF++CS+EFISQIV RVCEEFF PGE+IMEQG VD Y VCHGVLEE+ + ++G+EE VALL+P+S FG +SILCNIPQPYT+RV +LCRL+R+DKQ FSNIL+IY D +RI+TN+ EG+ +L VKQ+ESDITFHIGK+EAELA +VNSAAYHGDL QLKGLIRAGADPNKKDY GRSPL HLAASRG+EDI++FLIQE VD+N DNF TPLFEAIK GH +VASLL+KEGA LK+++AG+FLC VA+GD D ++R LS+G+DPNSKDYDHRTPLHVAASQG + +A+LLL AGASV KDR+ +S N + +L + PI ++ + +KCTVFPFHP +P D ++GV+LW+P+++ ELI TA++QLNF S I+SEDAGK+LD+ +ISDGQKLYLI+E
Sbjct: 11 ERNISRRDSGAEYKMEDL---TKSSRSSRRYALMEKELGLDSSTHSRFSREN--VINGIKGLSQGSVIYPDDRWYKIWEKFILIWAIYSSFFTPMEFAFFKGLPRKLFLLDICGQIAFLVDIVVQFFVAYRDSQTYKMVHKRTPIALRYLKTHFILDFLSCMPWDNIYKAAGKKEGLRYLLWIRLSRVRRVNDFFQKMEKDIRINYLFTRILKLIVVELYCTHTAACIFYFLATTLPEEKEGYTWIGSLTLGDYSYSHFREIDLWRRYITSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTVRYRDKMTDLMNYMNRNRLGRDIRTQIKDHLRLQYESAYTDAAVLQDLPISIRAKISQTLYQSCIENIPLFRDCSSEFISQIVTRVCEEFFLPGEVIMEQGHVVDQPYFVCHGVLEEIGIGNDGSEERVALLEPNSSFGEISILCNIPQPYTVRVCELCRLIRIDKQSFSNILEIYFHDGRRILTNLLEGKDSDLRVKQVESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDISLFLIQEGVDLNASDNFDTTPLFEAIKNGHDRVASLLVKEGAFLKIENAGSFLCMLVAKGDSDLLRRLLSNGIDPNSKDYDHRTPLHVAASQGLFAMARLLLGAGASVFSKDRWGNTPFDEARLSGNNQLAKLLEEAKSAQISEFPIA-PHEISEKMHPQKCTVFPFHPWEPKDLRKHGVVLWIPKSMEELITTASEQLNFPSGSCILSEDAGKILDIGLISDGQKLYLISE 825
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z7A8 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_016460239.1}))
HSP 1 Score: 1095.49 bits (2832), Expect = 0.000e+0
Identity = 531/824 (64.44%), Postives = 657/824 (79.73%), Query Frame = 0
Match: A0A1S3Z7A8 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_016460239.1}))
HSP 1 Score: 1095.49 bits (2832), Expect = 0.000e+0
Identity = 531/824 (64.44%), Postives = 657/824 (79.73%), Query Frame = 0
Query: 19 EFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRL-FDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFRLMCTIPIK----FSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINER 829
E+E++++RD+I S+R +R+ L +D LG ++ RRR +RL + SQ +HP N+WYR+WE FI++++IYSSFFTP EF FF GLP+ LFLLD+ GQ+ F+ D+VLQFFVAYRDS TYKM+Y R+ IALRYLKSHFI+DFL C+PWDI+YKA GS EEVR+LLWIRLSR R++ F K+EKDIRINYLF RI+KL+ VE+YCTHTAACIFYYLAT++ +EGYTWIGSL+LGD+SYSNFR+I+LW RY TS+YF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+L AYLIGN+TALIVKGSKTERYRDKM+D+ KY++RNRLG+DIR IK HLRLQYE +YTD+AVL+D+PISIRAKISQ+LY+ Y+E V LFK CS+EFISQ+V RV EEFF PGE+IMEQG+ VD +Y VCHGVLEEV + +G+EE VALL+P+S FG +SI+CNIPQPYT+RV +LCRL+R+DKQ FSNIL+IY D +RI++N+ +G+ NL VKQLESDI FHIGK EAELA +VNSAAYHGDL QLK LIRAGADPNKKDY GRSPL HLAASRG+EDIT+FLIQE VDIN D FGNTPL EAIK GH +VASLL+KEGA LK+++AG+FLC +A+GD D ++R LS+GVDPNSKDYD RTPLHVAASQG Y +AKLLL AGASV KDR+ VS + L + + ++ L +KCTVFPFHP + D ++GV++W+P+TI EL+ TA+++LNF +S I+SEDAGK+LD++MI+DGQKLYLIN++
Sbjct: 19 EYEVEDVRDKIESSRGSRFQ--LIED-DLGLNLFRRR-------ISRLKINLSQVFIIHPENRWYRMWENFILIWSIYSSFFTPMEFAFFNGLPRKLFLLDICGQIVFLVDIVLQFFVAYRDSQTYKMVYKRTPIALRYLKSHFILDFLSCMPWDIIYKAVGSKEEVRYLLWIRLSRARRITYFFQKMEKDIRINYLFTRIVKLITVELYCTHTAACIFYYLATTLSEQQEGYTWIGSLKLGDYSYSNFRDIDLWTRYTTSMYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILSAYLIGNMTALIVKGSKTERYRDKMTDLLKYMNRNRLGRDIRNQIKGHLRLQYESAYTDAAVLQDIPISIRAKISQSLYQSYIENVPLFKGCSSEFISQVVTRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAKDGSEETVALLEPNSSFGDISIVCNIPQPYTVRVCELCRLIRIDKQSFSNILEIYFHDGRRILSNLLQGKESNLRVKQLESDIAFHIGKHEAELALKVNSAAYHGDLHQLKSLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDITLFLIQEGVDINAPDKFGNTPLLEAIKSGHDRVASLLVKEGAFLKIENAGSFLCMVIAKGDSDLLRRLLSNGVDPNSKDYDQRTPLHVAASQGLYSMAKLLLGAGASVFTKDRWGNTPVDEARVSGNKQMIGLLEEAKSAQLSEFPDVPHEISEKLRPRKCTVFPFHPWESKDVRKHGVVMWIPQTIEELVTTASEKLNFPSDSCILSEDAGKILDIDMIADGQKLYLINDQ 819
BLAST of DCAR_003422 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YFZ4 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_009802068.1}))
HSP 1 Score: 1094.72 bits (2830), Expect = 0.000e+0
Identity = 531/824 (64.44%), Postives = 656/824 (79.61%), Query Frame = 0
Match: A0A1U7YFZ4 ((potassium channel SKOR-like {ECO:0000313|RefSeq:XP_009802068.1}))
HSP 1 Score: 1094.72 bits (2830), Expect = 0.000e+0
Identity = 531/824 (64.44%), Postives = 656/824 (79.61%), Query Frame = 0
Query: 19 EFEIQELRDEIRSARHNRYMSGLSQDLQLGSSINRRRSHGNDSFFTRL-FDFSQDCSVHPNNKWYRVWEKFIVLYAIYSSFFTPFEFGFFRGLPQNLFLLDVVGQVAFVCDMVLQFFVAYRDSVTYKMIYNRSAIALRYLKSHFIVDFLGCLPWDILYKASGSSEEVRFLLWIRLSRTRKVLAFLHKLEKDIRINYLFCRILKLLIVEIYCTHTAACIFYYLATSMPADKEGYTWIGSLQLGDHSYSNFREINLWKRYLTSLYFSIITMATVGYGDIHAVNPREMIFVMIYVSLDMVLGAYLIGNITALIVKGSKTERYRDKMSDIFKYLSRNRLGKDIRRLIKDHLRLQYECSYTDSAVLRDLPISIRAKISQNLYKPYVEKVVLFKECSAEFISQIVNRVCEEFFFPGELIMEQGDAVDHIYIVCHGVLEEVTVRDNGAEEEVALLQPSSLFGVVSILCNIPQPYTIRVRDLCRLLRLDKQIFSNILQIYVDDEQRIITNIREGR-VNLHVKQLESDITFHIGKREAELATQVNSAAYHGDLLQLKGLIRAGADPNKKDYGGRSPLKEATVSDRVFCLQHLAASRGHEDITIFLIQESVDINIIDNFGNTPLFEAIKGGHGQVASLLIKEGAVLKVDDAGTFLCTTVARGDIDFIKRALSSGVDPNSKDYDHRTPLHVAASQGFYLLAKLLLEAGASVLLKDRY-------YLVSCFNNIDELFRLMCTIPIK----FSFMMTANLPTKKCTVFPFHPQKPMDSDRYGVILWVPRTIGELIETAAKQLNFSPNSFIVSEDAGKLLDVNMISDGQKLYLINER 829
E+E++++RD+I S+R +R+ L +D LG ++ RRR +RL + SQ +HP N+WYR+WE FI++++IYSSFFTP EF FF GLP+ LFLLD+ GQ+ F+ D+VLQFFVAYRDS TYKM+Y R+ IALRYLKSHFI+DFL C+PWDI+YKA GS EEVR+LLWIRLSR R++ F K+EKDIRINYLF RI+KL+ VE+YCTHTAACIFYYLAT++ +EGYTWIGSL+LGD+SYSNFR+I+LW RY TS+YF+I+TMATVGYGDIHAVN REMIFVMIYVS DM+L AYLIGN+TALIVKGSKTERYRDKM+D+ KY++RNRLG+DIR IK HLRLQYE +YTD+AVL+D+PISIRAKISQ+LY+ Y+E V LFK CS+EFISQ+V RV EEFF PGE+IMEQG+ VD +Y VCHGVLEEV + +G+EE VALL+P+S FG +SI+CNIPQPYT+RV LCRL+R+DKQ FSNIL+IY D +RI++N+ +G+ NL VKQLESDI FHIGK EAELA +VNSAAYHGDL QLK LIRAGADPNKKDY GRSPL HLAASRG+EDIT+FLIQE VDIN D FGNTPL EAIK GH +VASLL+KEGA LK+++AG+FLC +A+GD D ++R LS+GVDPNSKDYD RTPLHVAASQG Y +AKLLL AGASV KDR+ VS + L + + ++ L +KCTVFPFHP + D ++GV++W+P+TI EL+ TA+++LNF +S I+SEDAGK+LD++MI+DGQKLYLIN++
Sbjct: 19 EYEVEDVRDKIESSRGSRFQ--LIED-DLGLNLFRRR-------ISRLKINLSQVFIIHPENRWYRMWENFILIWSIYSSFFTPMEFAFFNGLPRKLFLLDICGQIVFLVDIVLQFFVAYRDSQTYKMVYKRTPIALRYLKSHFILDFLSCMPWDIIYKAVGSKEEVRYLLWIRLSRARRITYFFQKMEKDIRINYLFTRIVKLITVELYCTHTAACIFYYLATTLSEQQEGYTWIGSLKLGDYSYSNFRDIDLWTRYTTSMYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMILSAYLIGNMTALIVKGSKTERYRDKMTDLLKYMNRNRLGRDIRNQIKGHLRLQYESAYTDAAVLQDIPISIRAKISQSLYQSYIENVPLFKGCSSEFISQVVTRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAKDGSEETVALLEPNSSFGDISIVCNIPQPYTVRVCQLCRLIRIDKQSFSNILEIYFHDGRRILSNLLQGKESNLRVKQLESDIAFHIGKHEAELALKVNSAAYHGDLHQLKSLIRAGADPNKKDYDGRSPL-------------HLAASRGYEDITLFLIQEGVDINAPDKFGNTPLLEAIKSGHDRVASLLVKEGAFLKIENAGSFLCMVIAKGDSDLLRRLLSNGVDPNSKDYDQRTPLHVAASQGLYSMAKLLLGAGASVFTKDRWGNTPVDEARVSGNKQMIGLLEEAKSAQLSEFPDVPHEISEKLRPRKCTVFPFHPWESKDVRKHGVVMWIPQTIEELVTTASEKLNFPSDSCILSEDAGKILDIDMIADGQKLYLINDQ 819
| Match Name | Stats | Description |
|---|---|---|
| A0A2G9GNW1 | E-Value: 0.000e+0, PID: 65.25 | (K+-channel ERG {ECO:0000313|EMBL:PIN06938.1})[more] |
| W9S152 | E-Value: 0.000e+0, PID: 65.16 | (Potassium channel SKOR {ECO:0000313|EMBL:EXC20599... [more] |
| A0A314KXX1 | E-Value: 0.000e+0, PID: 64.68 | (Potassium channel skor {ECO:0000313|EMBL:OIT34005... [more] |
| A0A2H5PLK8 | E-Value: 0.000e+0, PID: 64.02 | (Uncharacterized protein {ECO:0000313|EMBL:GAY5323... [more] |
| A0A1U7V8F0 | E-Value: 0.000e+0, PID: 63.19 | (potassium channel SKOR-like {ECO:0000313|RefSeq:X... [more] |
| A0A1S3XFN7 | E-Value: 0.000e+0, PID: 63.19 | (potassium channel SKOR-like {ECO:0000313|RefSeq:X... [more] |
| M1B0P5 | E-Value: 0.000e+0, PID: 64.32 | (Potassium channel TORK1 {ECO:0000313|EnsemblPlant... [more] |
| Q5NT78 | E-Value: 0.000e+0, PID: 63.19 | (Potassium channel TORK1 {ECO:0000313|EMBL:BAD8103... [more] |
| A0A1S3Z7A8 | E-Value: 0.000e+0, PID: 64.44 | (potassium channel SKOR-like {ECO:0000313|RefSeq:X... [more] |
| A0A1U7YFZ4 | E-Value: 0.000e+0, PID: 64.44 | (potassium channel SKOR-like {ECO:0000313|RefSeq:X... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |