Resource Type:
Polypeptide
Name:
DCAR_002485
Identifier:
DCAR_002485.mRNA-protein
Sequence:
MNSNYGRSNKTSSFDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSW
QPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNN
IGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGG
MKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVG
GSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDF
QNAPKPNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFD
VLFPTSSTDGGAKGLEDLGGQQSSGIGGWDTEFGGGDDKGGTTELEGLPP
PPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVL
SSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLG
AEDLRTVMKLDPGNRVARSTIHRLTKMAEG*
Sequence Length:
481
Sequence Checksum:
0e20c6dd0cd577b901089efa22357f2f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_002485, derives from mRNA, DCAR_002485. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0Z0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50472.1}))
HSP 1 Score: 515.383 bits (1326), Expect = 4.508e-178
Identity = 306/509 (60.12%), Postives = 362/509 (71.12%), Query Frame = 0
Match: A0A5B7A0Z0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50472.1}))
HSP 1 Score: 515.383 bits (1326), Expect = 4.508e-178
Identity = 306/509 (60.12%), Postives = 362/509 (71.12%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNK---------TSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKN-----VASSGGGGGGWGGSGGYNASGNVGLSGG--KSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVS-NNSVPVNLS------EGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
MNSNYG+ +++ S +DFD G+ +N SRSLNDQKN+ +ST P T + + SWQPNKPSWTHQPAP SQS LPG G TSMVGDI G+SW S+A + ++ IG+V KNPNLFGDLVG ALG NKG++NVPLKN PVS + +SMG + DSLPK +S+ G G + G N + KSTNLGGP+M S GG GGGMSS KDPF SL++FG K AA M SE K +NK++L D FGDFQNA K + S +N+ P N++ ++S M+DFG +Q QPPVQSS VD FDVLF +SS GA KG E L QQ S W D+EFGGG+D GGTTEL+GLPPPP+GV+++AAKNKG++ +KQGQ+ DAIKWLSWAV+LF KA DN T EVLS RASCYKEVGEYKKAVADCTKVLE D NV+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHR+TKMAE
Sbjct: 1 MNSNYGKPSQSVSLNNYDFDFGIGTNRSRSLNDQKNQNSSYSSSSFSSTQPKPNTTSSSSSWQPNKPSWTHQPAP-SQSNLPGLSSGSTSMVGDIFGKSWGSSA-PSSTTSTIGIVNKNPNLFGDLVGSALGQNKGNTNVPLKNARPVSTQASNKSAYSMGNLADSLPKTSNPVKTSSNWGSSESLGSNTGAYNYSNNSNNVNNTKSTNLGGPSMLSKGGGVGGGGMSSKKDPFVSLVDFGSKPAASMNSEGK-GNNKSNLGNDAFGDFQNASKSSTRTSMSNAFPTNMNNSTGSNHDAYSKMDDFGIPTSQNQPPVQSSGVDAFDVLFSSSSASAGAASKGFEGLRSQQFSETDDWGFDSEFGGGNDAGGTTELDGLPPPPAGVSSSAAKNKGVDFHKQGQYADAIKWLSWAVILFEKADDNATTMEVLSCRASCYKEVGEYKKAVADCTKVLEQDSTNVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRMTKMAE 506
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MIC9 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99184.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 8.477e-176
Identity = 302/512 (58.98%), Postives = 354/512 (69.14%), Query Frame = 0
Match: A0A2J6MIC9 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99184.1}))
HSP 1 Score: 509.605 bits (1311), Expect = 8.477e-176
Identity = 302/512 (58.98%), Postives = 354/512 (69.14%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTT---PSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK-TGSNNIGVVVKNPNLFGDLVGPALGGNKGS-SNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSN-----------------------MNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
MNSNYGRSN++ S FDFDLG++SN S+ LN Q N + T P ATP SWQPNKPSWTHQPA P+ S L G L GPTSMVGDITGRSWAS+AP + + ++NIG+ KNPNLF DL+G LG KG+ SNVPLKN+AP S +SMGGM +SLPK + GG S + + N G K+ NLGG +MKS SG GGGM+SNKDPFGSL++F K A+G KS +K TS T D FG FQNA K + +N S S GSHS ++DFGF Q QPPVQSST +DFD+LF +SS D E+L QQ +G W +++ GGGD GGTTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L K+ DN T EVLSSRASCYKEVGEYKKAVADC+KVLE D+KNVSVLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct: 1 MNSNYGRSNQSGSLNNFDFDLGINSNRSKPLNAQNNNNTFTQPKPYTATP----SWQPNKPSWTHQPAAPAPSSTLGGPLNGPTSMVGDITGRSWASSAPQRPSNTSNIGIASKNPNLFSDLLGSNLGAGKGNNSNVPLKNVAPASSQTASRSAYSMGGMANSLPKPGNTMNSSGGWGSSSSQGSGNYNTSGYGNKNQNLGGSSMKSSTMSGIGGGMNSNKDPFGSLVDFSSKPASGTKSGNK-TSKPTKSGDDMFGSFQNASKDSKPNTNPSF-TGSSMGSHSQPKVDDFGFGFGNISNPPPVQSSKLDDFGFNGKQNQPPVQSSTGNDFDILFASSSKDS-----ENLVSQQFAGAEDWGFESDIGGGD-VGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKSGDNVATMEVLSSRASCYKEVGEYKKAVADCSKVLEQDKKNVSVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 500
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XJ25 ((Tetratricopeptide-like helical {ECO:0000313|EMBL:KVH91696.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 6.506e-175
Identity = 305/535 (57.01%), Postives = 347/535 (64.86%), Query Frame = 0
Match: A0A103XJ25 ((Tetratricopeptide-like helical {ECO:0000313|EMBL:KVH91696.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 6.506e-175
Identity = 305/535 (57.01%), Postives = 347/535 (64.86%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK---TGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVP-----VNLSEGSHSNMNDFGFFPTQVQP---------------------------------------PVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGWDTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
MNSNYGRS+++ S FDFDLG++SN S+ LN QKN T T P T PSWQPNKPSWTHQPA P+ S L G L GPTSMVGDITG+SWAS AP + T + NIG+ K+PNLF DL+G LG KG SSNVPLKN APVS +SMGGM DSLPK+ + GGG WG S G YN SG G K+ NLGGP+MKS SG GGGM SNKDPFGSL++F K A G+K+ S+K+ D FG FQNA KP S N+ P L S S ++DFGF Q QP PVQSS +DFDVLF +SS G K E+ QQ +G W E G D GGTTELEGLPPPP+GVTA++AK KGMENYK GQ+PDAIKWLSWAV+L +A DN + EVLS RASCYKEVGEYKKAVADC+KVLE D KNV VLVQRALLYESMEKYKLGA+DLRTVM +DPGNRVARSTIHRL+KMA
Sbjct: 1 MNSNYGRSSQSGSLNNFDFDLGINSNRSKPLNAQKNNTFTQPKPNT-TTTPSWQPNKPSWTHQPAAPTPSSTLGGPLNGPTSMVGDITGKSWASTAPQRPSGTAATNIGIANKSPNLFSDLLGSNLGTGKGNSSNVPLKNAAPVSSQTASKSAYSMGGMSDSLPKSGNTVNSGGGNWGSSQGFGNYNTSG----YGSKNQNLGGPSMKSSTASGIGGGMGSNKDPFGSLVDFSSKPATGLKAVKTNVSSKSG--DDVFGSFQNASKP----STNAFPSTTSFTGLGMNSQSKVDDFGFGGMQNQPSVQSSGGNVFQSNTSSMGSGMNSQSKVDDFGFGGMKNPPPVQSSGGNDFDVLFSSSSASAGNASKDSENFMSQQFAGAEDWGFESEVGGDVGGTTELEGLPPPPAGVTASSAKMKGMENYKAGQYPDAIKWLSWAVILAERAGDNASSMEVLSPRASCYKEVGEYKKAVADCSKVLEQDSKNVPVLVQRALLYESMEKYKLGADDLRTVMNIDPGNRVARSTIHRLSKMA 524
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TS12 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98827.1}))
HSP 1 Score: 505.368 bits (1300), Expect = 4.178e-174
Identity = 308/519 (59.34%), Postives = 363/519 (69.94%), Query Frame = 0
Match: A0A068TS12 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98827.1}))
HSP 1 Score: 505.368 bits (1300), Expect = 4.178e-174
Identity = 308/519 (59.34%), Postives = 363/519 (69.94%), Query Frame = 0
Query: 1 MNSNYGRSNKTS----SFDFDLGLSSNNSRSLNDQKNKTSTTPSY----ATPNLAPSW--QP-NKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNA--------SGNVGLSG--GKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGD-GFGDFQNAPKPN---------VSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPV----QSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
MNSNYG+SN S SFDFDLGL + SRSLNDQKN+TS+ SY A P+ PSW QP NKPSWTHQPA P+QS GSL GPTSMVGDI G+SW S+APA + ++ GVV K+PNLFGDL+G ALG NKG+SNVPLKN AP S NKS FSMGGM D LPK +S G WG S G Y + GNV L+G K TNLGGP+MKS+ G G GGM SNKDPFGSL++F K + MKSESK ++ +S VGD F FQ+A K + S +NS + GS+SN++DFGFF T QP QS+ VD FD LF T+ G + Q SSG W +++F G D GGTTELEGLPPPP+GV+A+ AKNKG++NYKQGQF DAIKWLSWAV+L KA + GT +VL+ RA+CYKEVGEYKKAVADCT+ LE D+KNV++LVQRALLYESMEKYKLGAEDLRTVM++DPGNRVARSTIHRLTKMA+
Sbjct: 1 MNSNYGKSNTKSGSLNSFDFDLGLGKSGSRSLNDQKNQTSSYGSYSSAQAKPSTTPSWTHQPINKPSWTHQPAAPAQSAGTGSLSGPTSMVGDIFGKSWGSSAPASSLNSGSGVVNKDPNLFGDLLGSALGQNKGNSNVPLKNAAPAS---NKSS-FSMGGMADELPK-TGNSTKSSGNWGSSETFGTYTSGFSSNNSDRGNVNLNGNASKGTNLGGPSMKSMAGGGGLGGMGSNKDPFGSLVDFSSKPSGNMKSESKGSA--SSKVGDDAFQSFQSASKTSGAAHPSGSFTSGKSNSTGSG-AGGSYSNVDDFGFFSTPSQPHSRPSGQSTGVDSFDALFMTTPGSGA-----EFKSQDSSGGDDWGFESDFNG-HDTGGTTELEGLPPPPAGVSASTAKNKGLDNYKQGQFADAIKWLSWAVILLEKAGGDTGTMDVLTCRAACYKEVGEYKKAVADCTEALEQDDKNVNILVQRALLYESMEKYKLGAEDLRTVMRIDPGNRVARSTIHRLTKMAD 505
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PJ36 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453655.1}))
HSP 1 Score: 503.827 bits (1296), Expect = 2.418e-173
Identity = 301/526 (57.22%), Postives = 354/526 (67.30%), Query Frame = 0
Match: A0A5N6PJ36 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453655.1}))
HSP 1 Score: 503.827 bits (1296), Expect = 2.418e-173
Identity = 301/526 (57.22%), Postives = 354/526 (67.30%), Query Frame = 0
Query: 1 MNSNYGRSNKT---SSFDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQS-VLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSE-----GSHSNMNDFGFFPTQVQP-----------------------------------PVQSSTVDDFDVLFPTSSTDGGAKGL--EDLGGQQSSGIGGWDTEFGGGDDKGG-TTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
MNSNYGRS ++ +SFDFDLG++SN S+ LN Q N T T P T PSWQPNKPSWTHQPA P+QS L GSL GPTSMVGDI+GRSWAS+AP + S IG+ NPNLF DL+G LG KG +SNVPLKN+APVS +SMGGM DSLPK+ S+ GGWG S G+ S N G G K+ NLGGP+MK SG GG M+SNKDPFGSL++F K AAG+K+ +K+ + TS D FG FQNAPKP S N P S GS S ++DFGF Q QP PVQSS DD DV+F +SS +K ++LG + + +++E GGG G TTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L KA D+ G EVLSSRASCYKEVGEYKKAVADC+KVL+ D KNV+VLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct: 1 MNSNYGRSTQSGSLNSFDFDLGINSNRSKPLNAQNNNTYTQPKPNT--TTPSWQPNKPSWTHQPAAPTQSSTLGGSLNGPTSMVGDISGRSWASSAPQRP-STGIGIANSNPNLFSDLLGSNLGTGKGINSNVPLKNVAPVSSQTTGKSAYSMGGMADSLPKS-GSTVNSAGGWGSSQGF-GSFNTGGYGNKNQNLGGPSMKGSTMSGVGGSMNSNKDPFGSLVDFSSKPAAGLKAGNKKAAPTTS-GDDAFGGFQNAPKP----STNPFPSKTSSTGSGIGSQSKLDDFGFGGMQSQPTVQSSGANLFQSNTSFMGSQLKTDNFGFGGMGNQAPVQSSGADDLDVIFSSSSAGNTSKNFANQNLGWDE---VCDFESEIGGGGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKAGDSTGAMEVLSSRASCYKEVGEYKKAVADCSKVLDQDGKNVAVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 513
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PGX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453637.1}))
HSP 1 Score: 499.975 bits (1286), Expect = 7.904e-172
Identity = 299/526 (56.84%), Postives = 350/526 (66.54%), Query Frame = 0
Match: A0A5N6PGX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453637.1}))
HSP 1 Score: 499.975 bits (1286), Expect = 7.904e-172
Identity = 299/526 (56.84%), Postives = 350/526 (66.54%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQS-VLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSE-----GSHSNMNDFGFFPTQVQP-----------------------------------PVQSSTVDDFDVLFPTSSTDGGAKGL--EDLGGQQSSGIGGWDTEFGGGDDKGG-TTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
MNSNYGRS ++ S FDFDLG++SN S+ LN Q N T T P T PSWQPNKPSWTHQPA P+QS L GSL GPTSMVGDI+GRSWAS AP + S G+ NPNLF DL+G LG KG +SNVPLKN+APVS +SMGGM DSLPK+ S+ GGWG S G+ S N G G K+ NLGGP+MK SG GG M+SNKDPFGSL++F K AAG+K+ +K+ + TS D FG FQNAPKP S N P S GS S ++DFGF Q QP PVQSS DD DV+F +SS +K ++LG + + +++E GG G TTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L KA D+ G EVLSSRASCYKEVGEYKKAVADC+KVL+ D KNV+VLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct: 1 MNSNYGRSTQSGSLNNFDFDLGINSNRSKPLNAQNNNTYTQPKPNT--TTPSWQPNKPSWTHQPAAPTQSSTLGGSLNGPTSMVGDISGRSWASTAPQRP-STGTGIANTNPNLFSDLLGSNLGTGKGINSNVPLKNVAPVSSQTTGKSAYSMGGMADSLPKS-GSTVNSAGGWGSSQGF-GSFNTGGYGNKNKNLGGPSMKGSTMSGVGGSMNSNKDPFGSLVDFSSKPAAGLKAGNKKAAPTTS-GDDAFGGFQNAPKP----STNPFPSKTSSTGSGIGSQSKLDDFGFGGMQSQPTVQSSGANLFQSNTSFMGSQLKTDNFGYGGMGNQAPVQSSGADDLDVIFSSSSAGNTSKNFANQNLGWDE---VCDFESEIGGRGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKAGDSTGAMEVLSSRASCYKEVGEYKKAVADCSKVLDQDGKNVAVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 513
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PJR0 ((Sperm-associated antigen 1A like {ECO:0000313|EMBL:PSR92565.1}))
HSP 1 Score: 495.352 bits (1274), Expect = 2.089e-170
Identity = 301/512 (58.79%), Postives = 355/512 (69.34%), Query Frame = 0
Match: A0A2R6PJR0 ((Sperm-associated antigen 1A like {ECO:0000313|EMBL:PSR92565.1}))
HSP 1 Score: 495.352 bits (1274), Expect = 2.089e-170
Identity = 301/512 (58.79%), Postives = 355/512 (69.34%), Query Frame = 0
Query: 1 MNSNYGRSNKTSSF---DFDLGLSSNNSRSLNDQKNKTSTTPSYAT-------PNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSN---NIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS-------GGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPK---------PNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTD--GGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
MNS+YG+S K SF DFD GL N SR LN QKN+T++ S ++ PN PSWQP +PSWTHQP P + +P TSMVGDI +SW S++ A+T S+ ++G+V KNPNLFGDLV A+G NKG+SN PLKN P S SG+ G ++MG M DSLPK +S GG G S GYN+S N+ + K+ NLGG +M+S GG G M +NKDPFGSL++FG K A+GM S K NK++ GD FGDFQNA K P V NN P+ S S++ ++DF +Q QPPVQSS D FD LF +SS G AKG E LGGQQ SG W D+EFGGG+D GGTTELEGLPPPP+GV+A+AA NKGM+NYKQGQ+ DAIKWLSWAV+L K D + T EVLSSRASCYKEVGEYKKAVADCTKVL HD +NV+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRL KMAE
Sbjct: 1 MNSDYGKSTKPMSFNNHDFDFGLDLNRSRPLNAQKNQTTSYTSSSSFASTQPKPNTTPSWQP-RPSWTHQPTQPGLTTVP------TSMVGDIFEKSWGSSS-ARTNSSAKSSVGIVNKNPNLFGDLVSSAIGQNKGNSNAPLKNANPASVSGSNKGAYTMGNMADSLPK-TGNSAKGGSNLGSSESFGSYTSGYNSSSNINV---KNANLGGASMRSGGG----GNMGTNKDPFGSLVDFGSKSASGMNSAGK-GHNKSTSGGDAFGDFQNASKSSAPLFTENPFPEVKNN--PMGSSFDSYTKLDDFAILTSQNQPPVQSSGADAFDSLFNSSSATSGGAAKGSEGLGGQQFSGAEDWGMDSEFGGGNDTGGTTELEGLPPPPAGVSASAATNKGMDNYKQGQYADAIKWLSWAVILREKGGDASATMEVLSSRASCYKEVGEYKKAVADCTKVLAHDGENVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLIKMAE 493
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7KVV0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4075380.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 2.455e-170
Identity = 302/518 (58.30%), Postives = 353/518 (68.15%), Query Frame = 0
Match: A0A6S7KVV0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4075380.1}))
HSP 1 Score: 495.738 bits (1275), Expect = 2.455e-170
Identity = 302/518 (58.30%), Postives = 353/518 (68.15%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTT---PSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK-TGSNNIGVVVKNPNLFGDLVGPALGGNKGS-SNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPK--NVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSN-----------------------MNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGWDTE------FGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
MNSNYGRSN++ S FDFDLG++SN S+ LN Q N + T P ATP SWQPNKPSWTHQPA P+ S L G L GPTSMVGDITGRSWAS+AP + + ++NIG+ KNPNLF DL+G LG KG+ SNVPLKN+AP S +SMGGM +SLPK N +S GG G S + + N G K+ NLGG +MKS SG GGGM+SNKDPFGSL++F K A+G KS +K TS T D FG FQNA K + +N S S GSHS ++DF F Q QPPVQSST +DFD+LF +S+ D E+L QQ +G W E G G D GGTTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L K+ DN T EVLSSRASCYKEVGEYKKAVADC+K+LE D+KNVSVLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct: 1 MNSNYGRSNQSGSLNNFDFDLGINSNRSKPLNAQNNNNTFTQPKPYTATP----SWQPNKPSWTHQPAAPAPSSTLGGPLNGPTSMVGDITGRSWASSAPQRPSSTSNIGIASKNPNLFSDLLGSNLGAGKGNNSNVPLKNVAPASSQTASRSAYSMGGMANSLPKPGNTMNSSGGTGWGSSSSQGSVNYNTSGYGNKNQNLGGSSMKSSTMSGIGGGMNSNKDPFGSLVDFSSKPASGTKSGNK-TSTPTKSGDDMFGSFQNASKDSKPNTNPSF-TGSSMGSHSQPKVDDFGFGFSNIQNPPPVQSSKLDDFVFNGKQNQPPVQSSTGNDFDILFTSSTKDS-----ENLASQQFAGAEDWGFESDIGGGGGSGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKSGDNVATMEVLSSRASCYKEVGEYKKAVADCSKILEQDKKNVSVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 507
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A620 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50473.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 2.985e-168
Identity = 296/496 (59.68%), Postives = 346/496 (69.76%), Query Frame = 0
Match: A0A5B7A620 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50473.1}))
HSP 1 Score: 489.574 bits (1259), Expect = 2.985e-168
Identity = 296/496 (59.68%), Postives = 346/496 (69.76%), Query Frame = 0
Query: 1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNK----TSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGG------KSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
MNSNYG+S+K+ S FDFD GL +N SRSLNDQKN+ +ST P T +WQPNKPSWTHQPAP SQ PG G TSMVGDI G++WAS+A T ++ IG+V KNPNLFGDLV ALG NKG++NVPLKN P S NKS +SMG + DSLPK +S + + + S KS N+GGP+ SVGG GG+SSNKDPFGS ++F K A M S K +NK + D FGDFQNA K + S ++ + ++S M+DFG ++ PPVQSS VD FDVLF +SS GA KG E LG QQ S W D+EFGG +D GGTTEL+GLPPPP+GV+AAAA NKGM+NYKQGQ+ DAIKWLSWAV+L KA D+ T EVLS RASCYKEVGEYKKAVADCTKVLEHD +V+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARS+IHRLTKMAE
Sbjct: 1 MNSNYGKSSKSVSPNNFDFDFGLGTNRSRSLNDQKNQNSSYSSTQPKPNTTTSTAAWQPNKPSWTHQPAP-SQLNRPGLPSGSTSMVGDIFGKTWASSA-PSTTTSTIGIVNKNPNLFGDLVSSALGQNKGNTNVPLKNATPAS---NKSA-YSMGNLADSLPKTSSSMKTSSSWGSSESLGSTTSSYNYSNNSNANNMKSANIGGPSTHSVGG----GGLSSNKDPFGSFVDFRSKPAVTMNSVGK-GNNKPNSQDDAFGDFQNASKSSTPASTSTAKYS----AYSKMDDFGIPTSENHPPVQSSGVDAFDVLFSSSSASAGAAPKGSEGLGSQQFSKADDWGLDSEFGG-NDTGGTTELDGLPPPPAGVSAAAANNKGMDNYKQGQYADAIKWLSWAVILLEKAGDDAATMEVLSCRASCYKEVGEYKKAVADCTKVLEHDSTSVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSSIHRLTKMAE 480
BLAST of DCAR_002485 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WMX8 ((uncharacterized transmembrane protein DDB_G0289901-like {ECO:0000313|RefSeq:XP_027115981.1}))
HSP 1 Score: 489.96 bits (1260), Expect = 1.648e-167
Identity = 307/552 (55.62%), Postives = 363/552 (65.76%), Query Frame = 0
Match: A0A6P6WMX8 ((uncharacterized transmembrane protein DDB_G0289901-like {ECO:0000313|RefSeq:XP_027115981.1}))
HSP 1 Score: 489.96 bits (1260), Expect = 1.648e-167
Identity = 307/552 (55.62%), Postives = 363/552 (65.76%), Query Frame = 0
Query: 1 MNSNYGRSNKTS----SFDFDLGLSSNNSRSLNDQKNKTSTTPSY----ATPNLAPSW--QP-NKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNA--------SGNVGLSG--GKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGD-GFGDFQNAPKPN-VSVSNNSVPVNLSE-------GSHSNMNDFGFFPT--------------------------------------QVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
MNSNYG+SN S SFDFDLGL + SRSLNDQKN+TS+ SY A P+ PSW QP NKPSWTHQPA P+QS GSL GPTSMVGDI G+SW S+APA + ++ GVV K+PNLFGDL+G ALG NKG+SNVPLKN AP S NKS FSMGGM DSLPK +S G WG S G Y + GNV L+G K TNLGGP++KS+ G G GGM SNKDPFGSL++F K + MKSESK ++ +S VGD F FQ+A K + V+ + S S GS+SN++DFGFF T +P QS+ VD FD LF T+ G + Q SSG W +++F G D GGTTELEGLPPPP+GV+A+ AKNKG++NYKQGQF DAIKWLSW VVL KA D+ G +VL+ RA+CYKEVGEYKKAVADCTK LE D+KNV++LVQRALLYESMEKYKLGAEDLR+VM++DPGNRVARSTIHRLTKMA+
Sbjct: 1 MNSNYGKSNSKSGSLNSFDFDLGLGKSGSRSLNDQKNQTSSYGSYSSAQAKPSTTPSWTHQPINKPSWTHQPAAPAQSAGTGSLSGPTSMVGDIFGKSWGSSAPASSLNSGSGVVNKDPNLFGDLLGSALGQNKGNSNVPLKNAAPAS---NKSS-FSMGGMADSLPK-TGNSTKSSGNWGSSETFGTYTSGFSSNNSDRGNVNLNGNASKGTNLGGPSVKSMAGGGGLGGMGSNKDPFGSLVDFSSKPSGNMKSESKGSA--SSKVGDDAFQSFQSASKTSGVAHPSGSFTSGKSNSTGSGAGGSYSNVDDFGFFSTPSQSQPSSFPSGNHNTAGPGAGGSFSNIDDFGFPSSQPHSRPSGQSTGVDSFDALFTTTPGSGA-----EFKSQDSSGRDDWGFESDFNG-HDTGGTTELEGLPPPPAGVSASTAKNKGLDNYKQGQFADAIKWLSWTVVLLEKAGDDTGIMDVLTCRAACYKEVGEYKKAVADCTKALEQDDKNVNILVQRALLYESMEKYKLGAEDLRSVMRIDPGNRVARSTIHRLTKMAD 539
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A0Z0 | E-Value: 4.508e-178, PID: 60.12 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5047... [more] |
| A0A2J6MIC9 | E-Value: 8.477e-176, PID: 58.98 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9918... [more] |
| A0A103XJ25 | E-Value: 6.506e-175, PID: 57.01 | (Tetratricopeptide-like helical {ECO:0000313|EMBL:... [more] |
| A0A068TS12 | E-Value: 4.178e-174, PID: 59.34 | (Uncharacterized protein {ECO:0000313|EMBL:CDO9882... [more] |
| A0A5N6PJ36 | E-Value: 2.418e-173, PID: 57.22 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more] |
| A0A5N6PGX3 | E-Value: 7.904e-172, PID: 56.84 | (Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more] |
| A0A2R6PJR0 | E-Value: 2.089e-170, PID: 58.79 | (Sperm-associated antigen 1A like {ECO:0000313|EMB... [more] |
| A0A6S7KVV0 | E-Value: 2.455e-170, PID: 58.30 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4075... [more] |
| A0A5B7A620 | E-Value: 2.985e-168, PID: 59.68 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5047... [more] |
| A0A6P6WMX8 | E-Value: 1.648e-167, PID: 55.62 | (uncharacterized transmembrane protein DDB_G028990... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |