DCAR_004701

Resource Type: 
Polypeptide
Name: 
DCAR_004701
Identifier: 
DCAR_004701.mRNA-protein
Sequence: 
MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAGVAGNVPSK
ISAGSGEMKVLTDVMVTDNTSEHTQNPTDENGNQNLAKEEVPTKQMMLVA
NSANVGENGTIAVANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIE
ETERVAEGHISKVRKVYDAFLAEFPLCYGYWKKAVQGVTYSVDMWLHYCV
FAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLA
MIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAA
VGTTVQEIEEEVHPNAVESPKPVSAGITEAEELEKYITIREEMYNKAKEF
QSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYE
RCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVKGKAEDACS
LYEQAVAIEKGKEHSQTLPQLFAQYTRFVYLAVIHLESIQSTPKQIEFLD
SLINKFNAPNPDNPCAASFIDREELSSIFLEAEDRHSELFFVHKSTSESK
IRHADDILQSDKAKLAKSGYSSSPSVMGAYQSTKNQWPAGYGAQPQAWPQ
ATQAQAQNWTPAYTQAAYGGAYGNAYAQPQVQTSVPQAAAATAYGAYPPA
YTVQAQQTYVQAATPAPLAPGSSTATCCCCCPSILWHLLLLSQLMFHTIL
QFVAQIVCHWGMMEQQQQQQMPTVFDDHIIRGFEQEYRKAVAKVFIRNHG
DKGWTGFIVSLSPTVVITVAHAVGSFPVHQVFSEDQFYLKFYDDPAEYKA
RALKCSFKSDLLMLHCELRPSAVSFFEFADHTSPLLSSTSLLCISHPAQR
DWVTLRGTVCRVPFLMGENENYDHNMQLFDHDAQCFPGSSGAPITDLRGR
VIGMNFSEYTIKEHCFCVPNNAKETNLSTYQDGRVVPHQIKELTFLPCNV
KQGITLQYIAQTIRSFFQDEGFNDVDMNLNNYVRRSAIKYIMKEAKRKNQ
GKQPSQTPQGKRPREQRPAEETTEESNVFNPCLSISEGHGETCLGDIKKC
RKSEQIEAPLDVEVVSFNLDMSIASHEPKVTTRVGHKFDQKTFSLMKQAL
EIQAKLAPKFPSFVKNMLPSHVAGGFWLGIPKNFSDMHLPKHDETVVLID
ETELEHETKYFFEKNGLGVGWRGFSITHKLQENDVLVFHLIQECKFKVYI
VRANALTGSDGSACVEEMNCDHGEKDLKITVMAGEEHLEHYSSIHCGQKK
DKQMTLSSDLKGAMKCKILEEEEAGGTMGKAQGIIM*
Sequence Length: 
1287
Sequence Checksum: 
2ecc5f9bc4cd4650e0b5ba120502ab93
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_004701, derives from mRNA, DCAR_004701.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZHB5 ((Putative pre-mRNA-processing factor 39 {ECO:0000313|EMBL:MPA43334.1}))

HSP 1 Score: 768.074 bits (1982), Expect = 0.000e+0
Identity = 450/837 (53.76%), Postives = 526/837 (62.84%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTD--NYNENAASDAVTSDAGVAGNVPSKISAGSGEMK----VLTDVM--VTDNTSEHTQNP--TDENG----------------------NQNLAKEE---VPTKQMMLVANSAN--------------VGENG-TIAVANDFMS-----DAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTT--VQEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGY---SSSPSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYTQ----AAYGGAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQA--QQTY 659
            MGDSE VV QT++VM Y S  Y+S D  + + NAA D      G A ++ +  +  +G++     + TD +  V+D +S  + N   TD N                       ++NLA  E   V T Q+    +S N              V ENG T+  A+   S     D  ALSAEE+RLWSIVRANSL+F+AWTALIEETE++AE +I ++RKVYDAFLAEFPLCYGYWKK                    AVQGVTYSVD+WLHY VFAI+TYGDPDT+RRLFERGL YVG+D+LS+ +WDKYIEYEYT+QEWSRLAMIYTRILE+PN+ LDRYF       SF ELVA RPLSELRTAEE AAA A  +    QEIE EVHPNAVE SPKPVSAG+ EA+ELEKYI IREEMY KAKEF SKIIGFE AI+RPYFHVRPLN  EL NW+ YLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA NAL  ATQVFVK                                                   G  EDACS+YE A+AIEKGKEHSQTLP LFAQY+RF++L                           A+IHLESIQS PK+I++LDSL++KF  P+P+NP AAS  +REELSSIFLE             A DRH++LF  HK+TSESK RHA+D L SDK KLAKS     S++PSVMGAY S +NQW  GYG QPQAWPQ TQAQ Q W P YTQ    +AY G YG++Y  PQ+ TS+PQ A   AYGAYPP Y  Q   QQ+Y
Sbjct:    1 MGDSEAVVAQTSAVMGYASAGYSSADYSDPSSNAAPDGGAFAIGAAKDLAAPAATSTGDLAASAAMTTDAVNSVSDGSSLASGNACNTDLNSATQDAPATTTYDTKTSYEAVDTSENLAGLENASVHTSQVAGYDSSVNGNNVSEAGNTVVVGVSENGGTVDDAHGSTSVHQLVDGSALSAEEDRLWSIVRANSLDFNAWTALIEETEKMAEDNIFRIRKVYDAFLAEFPLCYGYWKKYADHEARLGTIDKVVEVYERAVQGVTYSVDIWLHYSVFAISTYGDPDTIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWSRLAMIYTRILESPNQQLDRYFN------SFNELVASRPLSELRTAEEAAAAVAANSEAGAQEIEGEVHPNAVEQSPKPVSAGLREADELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNIAELENWHIYLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHLFAAQFKEQSGDIPGARASYQLVHAEISPGLLEAIIKHANMEHRMGNLEDACSVYEHAIAIEKGKEHSQTLPLLFAQYSRFLHLVSGNVEKAREILVQALENVQLSKPHLEALIHLESIQSLPKRIDYLDSLVDKFIVPSPENPNAASITEREELSSIFLEFLDLFGDAQSIKKANDRHAKLFLRHKNTSESKKRHAEDFLVSDKTKLAKSYSGIPSTAPSVMGAYPSAQNQWATGYGLQPQAWPQVTQAQGQQWNPGYTQQAAYSAYSG-YGSSYTNPQIPTSLPQTA---AYGAYPPTYPAQGFPQQSY 827    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FN27 ((Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:GFY99539.1}))

HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 426/846 (50.35%), Postives = 509/846 (60.17%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAG-----------------------------VAGNVPSKISAGS----------------GEMKVLTDVMVTDNTSEHTQN----PTDENGNQNLAKEEVPTKQMMLVANSANVGENGTIAVANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTV-QEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYSSS----PSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYTQAAYGGAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQ---AQQTYVQAATPAPLAPGSSTATC 677
            MGDSETVV QT++VM YTS  Y+ST   N  + S +V SDAG                             V G   S  S  +                G +  + ++  + N S  +       +  NGN  +   ++    +  ++ + N  +N   +  +  + D  ALSAEEERLWSI  ANS +F+ WTALIEETE+++EG+I K+RKVYDAFLAEFPLCYGYWKK                    AVQGVTYSVD+WLHYCVFAINTYGDP+T+RRLFERGL YVG+D+LS+ +WDKYIEYEY +Q+WSRLA+IYTRILENPN+ LDRYF       SF+EL   RPLSEL   E  AAAA    +  QEIE EVHP A+E S KPVS+G+TEAEELEKYI IREEM+ KAKEF SKII FE AI+RPYFHVRPLN  EL NW+NYLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA NAL  ATQVFVK                                                   G  EDACS+YEQA+ IEKGKEHSQ+LP LFAQY+RF++L                           A+IHLESIQ  PK+IE+LDSL+ KF  P+PDN   AS  +REELSSI+LE             A+DRH+++F  HKSTSESK R A+D L S+K KLAKS YS+     PSVMGAY + +NQW  GYG+QPQ WPQ  Q+Q Q W P Y Q    G+YG++YA PQ+ T+VPQ A   AYGAYPP Y VQ    QQ Y Q AT A L P   TA+ 
Sbjct:    1 MGDSETVVAQTSAVMGYTSAGYSST---NYGSISSSVASDAGAFADATVTRDLVASAAVADVANTVADGSDVGGEAYSTDSNSAIQGAHATILYGSEPSYGVVDAVENIAGSTNISAGSSQVACADSSVNGNDVIEARDI---VLTGISENGNSSDNVHGSSFDHQLVDGSALSAEEERLWSIAGANSGDFNVWTALIEETEKMSEGNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIEKVVEVYEHAVQGVTYSVDIWLHYCVFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWSRLALIYTRILENPNQQLDRYFN------SFKELAGSRPLSELTAEEAAAAAAVKSESKDQEIEGEVHPTAIEQSLKPVSSGLTEAEELEKYIAIREEMFEKAKEFDSKIIDFETAIRRPYFHVRPLNVAELENWHNYLDFIEGVDDFNKVVKLYERCLIACANYPEYWIRYVLCMEACGSMDLANNALARATQVFVKRQPEIHLFAARFKEHSGEIPGARAAYQLVNTEIAPGLLEAIIKHANMEHRLGNLEDACSVYEQAIVIEKGKEHSQSLPFLFAQYSRFLHLVSSNVEKAREVLVQAHENVELTKPLLEALIHLESIQPPPKRIEYLDSLVEKFTVPSPDNLNIASVSEREELSSIYLEFLDLFGDAKSIKKADDRHAKIFLHHKSTSESKKRSAEDYLVSEKTKLAKS-YSNVPTTFPSVMGAYPNAQNQWAPGYGSQPQGWPQVAQSQGQQWNPGYAQQGAFGSYGSSYAHPQIPTTVPQTA---AYGAYPPTYPVQQAFPQQGYAQPATSAALNPAHQTASV 830    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QSF2 ((Pre-mRNA-processing factor like {ECO:0000313|EMBL:PSS14054.1}))

HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 420/842 (49.88%), Postives = 506/842 (60.10%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYA------------------------------------------STDNYNENAASDAVTSDAGVAGNVPSKISAGSGEMKVLTDVMVTDNTSEHTQN----PTDENGNQNLAKEEVPTKQMMLVANSANVGENGTIAVANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTV-QEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYS----SSPSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYTQAAYGGAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQA--QQTYVQAATPAPLAPGSSTATC 677
            MGDSETVV QT++VM YTS  Y+                                           +D   E  ++D+ ++  G    +        G +  + ++  + N S  +       +  NGN  +   ++    +  ++ + N  +N      +  + D  ALSAEEERLWSIV ANS +F+ WTALIEETE+++EG+I K+RKVYD FLAEFPLCYGYWKK                    AVQGVTYSVD+WLHYCVFAINTYGDP+T+RRLFERGL YVG+D+LS+ +WDKYIEYEY +Q+WSRLA+IYTRILENPN+ LDRYF       SF+EL   RPLSEL   E  A AA    +  QEIE E HP A+E SPKPVS+G+TEAEELEKYI IREEM+ KAKEF SKII FE AI+RPYFHVRPLN  EL NW+NYLDF+E  D+F KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA NAL  ATQVFVK                                                   G  EDACS+YEQA+AIEKGKEHSQ+LP LFAQY+RF+YL                           A+IHLESIQ  PK+IE+LDSL+ KF  P+PDN    S  +REELSSI+LE             A+DRH+++F  HKSTSESK R A+D L S+K KLAKS YS    +SPSVMGAY + +NQW AGYG+QPQ WPQ  Q+Q Q W P Y Q A  G+YG++YA PQ+ T+VPQ A   AYGAYPP Y VQA  QQ Y Q AT A L P   TA+ 
Sbjct:    1 MGDSETVVAQTSAVMGYTSAGYSSTNYSSISSSVASDAGAFADATVMRDLVASAVVADVANTVADGSDVGGEAYSTDSNSAIQGAHATMLYGSEPSYGVVDTVENIAGSTNISAGSSQVACADSSVNGNDVIEARDI---VLTCISENGNSSDNVHGTSFDHQLVDGFALSAEEERLWSIVGANSGDFNVWTALIEETEKMSEGNILKIRKVYDTFLAEFPLCYGYWKKYADHEARLGSIEKVVEVYEQAVQGVTYSVDIWLHYCVFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWSRLALIYTRILENPNQQLDRYFN------SFKELAGSRPLSELTAEEAAATAAVKSESKDQEIEGEAHPTAIEQSPKPVSSGLTEAEELEKYIAIREEMFEKAKEFDSKIIDFETAIRRPYFHVRPLNVAELENWHNYLDFIEGVDNFNKVVKLYERCLIACANYPEYWIRYVLCMEACGSMDLANNALARATQVFVKRQPEIHLFAAQFKEHSGEIPGARAAYQLVNTEISPGLLEAIIKHANMEHRLGNLEDACSVYEQAIAIEKGKEHSQSLPFLFAQYSRFLYLVSSNVEKAREVLVQVHENVELTKPLLEALIHLESIQQPPKRIEYLDSLVEKFIVPSPDNLNITSVSEREELSSIYLEFLDLFGDAKSIKKADDRHAKIFLHHKSTSESKKRSAEDYLISEKTKLAKS-YSNVPTTSPSVMGAYPNAQNQWAAGYGSQPQGWPQVAQSQGQQWNPGYAQQAAYGSYGSSYAHPQIPTTVPQTA---AYGAYPPTYPVQAFPQQGYAQPATSAALNPAQQTASV 829    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UTX3 ((pre-mRNA-processing factor 39 isoform X2 {ECO:0000313|RefSeq:XP_027094180.1}))

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 425/806 (52.73%), Postives = 499/806 (61.91%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAGVAGNVPSKISAGSGEMKVLTDVMVTDNTSEHTQNPTDENGNQNLAKEEVPTKQMMLVANSANVG--ENGTIA-------VANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTT--VQEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGY-SSSPSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYT-QAAYG--GAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQA--QQTYVQAATPAPLAPGSSTATC 677
            M DSE VV QT+S  A+T+  Y    N   +  SDA  S A    NV    + G+     + D  ++   +E T    D +                LV NS + G  ENG I+       V ++   D  ALS EEERLWSIVRANSL+F+AW ALIEETE+++EG+I K+RKVYDAFL EFPLCYGYWKK                    AVQGVTYSVDMWLHYC+FAI+TYGDP+T+RRLFERGL YVG+D+LS+ +WDKYIEYEYT+Q+WSR+A++YTR+LENPN+ LDRYF        F+ELVA RPLSELRT EE AAAA   +    QE+E E  PNAVE S KPVSA + +AEELEKYI +REEMY KAKEF SKIIGFE AI+RPYFHVRPL+ VEL NW+NYL F+E   D  KVVKLYERCLI CANYP+YWIRY+  MEA GS DLAENAL  ATQVFVK                                                   G  EDACSLYEQA+AIEKGKEHSQTLP LFAQY+RF++L                           A+IH ES+QS PK++++LDSL++KF  P  DNP  AS  +REELSSIFLE             A+DRH++LF  H S+ ESK R A+D L SDK KLAKS   SS+PSVMGAY + +NQWPAGYG  PQ WPQ  Q QAQ WTP Y  Q+AY   GAYG  Y Q QV  SVPQ A   AYGAYPP Y  QA  QQ+Y Q AT A L P   ++  
Sbjct:    1 MADSEAVVAQTSSATAFTAAGYPPVYN---DTNSDA--SGAAATKNVEDLTATGA--TTTMEDSNISFGATELTNYIADGSD---------------LVGNSTSTGVAENGIISDDTHGSNVVHELF-DGSALSDEEERLWSIVRANSLDFNAWIALIEETEKMSEGNILKIRKVYDAFLVEFPLCYGYWKKYADHEARLGSMDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQDWSRVALLYTRVLENPNQQLDRYFE------GFKELVANRPLSELRTGEEAAAAALENSENGGQEVEGENLPNAVEQSSKPVSASLKDAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLSGVELENWHNYLHFIEGVGDLSKVVKLYERCLIACANYPEYWIRYVRCMEASGSMDLAENALARATQVFVKRQPEIHLFAARFREQHADVAGARSAYQLVHTEISPGLLEAIIKHANMEHRFGNLEDACSLYEQAIAIEKGKEHSQTLPFLFAQYSRFLFLVAGKVEKARDILDQALENTLLSKPLIEALIHFESVQSLPKRMDYLDSLVDKFIVPTADNPNVASITEREELSSIFLEFLDLFGDAESIKKADDRHAKLFLPHGSSPESKKRLAEDYLISDKTKLAKSSLPSSAPSVMGAYPNAQNQWPAGYGL-PQGWPQVAQGQAQQWTPGYAQQSAYSAYGAYGTGYPQQQVPASVPQNA---AYGAYPPTYPTQAFGQQSYAQPATAATLTPAPQSSAV 773    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PQ16 ((Pre-mRNA-processing factor like {ECO:0000313|EMBL:PSR94890.1}))

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 425/847 (50.18%), Postives = 516/847 (60.92%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAG-----------------------------VAG------------NVPSKISAGSGEMKVLTDVMVTDNTSEHTQNPTDENGNQNLAKEEVPTKQMMLVANSANVGENGTI--AVANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTV--QEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL----------------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYS----SSPSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYTQAAYGGAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQA--QQTYVQAATPAPLAPGSSTATC 677
            MGDSETVV QT++VM YTS   A   + N ++ S  V SDAG                             V G              P+ +  GS  +  + ++  +   S  +   T  + + N   + +  + ++L   S N   +  +  + ++  + +  ALSAEEERLWSI+RANS +F+ WTALIEETE+++EG+I K+RKVYDAFLAEFPLCYGYWKK                    AVQGVTYSVD+WLHYCVFA++TYGDP+T+RRLFERGL YVG+D+LS+ +WDKYIEYEY +Q+WSRLA+IYTRILENPN+ LDRYF       SF+EL   RPLSEL TAE+  AAAAV +    Q+IE E  P A+E SPKPVSAG+TEAEELEKYI IREEM+ KAKEF SKII FE AI+RPYFHVRPL+  EL NW+NYLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA NAL  ATQVFVK                                                   G  EDACS+YEQA+AIEKGKEHSQ+LP LFAQY+RF+YL                                  A+IHLESIQ  PK+IE+LD L+ KF  P+PDN   A+  +REELSSI+LE             A+DRH+++F  HKSTSESK   A+D L S+K KLAKS YS    SSPSVMGAY + +NQW AGYG+QPQ WPQ  Q+Q Q W P+Y Q A  G+YG++Y QPQ+ T+VPQ A   AYGAYPP Y VQA  QQ Y Q AT   L P   TA+ 
Sbjct:   38 MGDSETVVAQTSAVMGYTS---AGYSSTNYSSISSNVASDAGAFADATTTRDLVAAVAVADVANTVADGSDVGGEAYSTYSNSAIQGAPATMLYGSDGVDAMENIAASTKISMGSSQVTGADSSVN-GNDVIEARDIVLTGISKNGNSSDKVHESSSDHQLVNGSALSAEEERLWSILRANSGDFNVWTALIEETEKMSEGNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIEKVVEVYEQAVQGVTYSVDIWLHYCVFAMSTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWSRLALIYTRILENPNQQLDRYFN------SFKELAGSRPLSEL-TAEDAGAAAAVNSESRDQDIEGEALPIAIEQSPKPVSAGLTEAEELEKYIAIREEMFKKAKEFDSKIIDFETAIRRPYFHVRPLHVAELENWHNYLDFIEGVDDFNKVVKLYERCLIACANYPEYWIRYVLCMEACGSMDLANNALARATQVFVKRQPEIHLFAAQFKEHSGEIPGARAAYQLVNTEISPGLLEAIIKHANMEHRLGNLEDACSVYEQAIAIEKGKEHSQSLPFLFAQYSRFLYLVSSNVEKAREVLVQAHENVQLTKPLLEVLSCSQQALIHLESIQPPPKRIEYLDPLVEKFIVPSPDNLNIATVSEREELSSIYLEFLDLFGDAKSIKKADDRHAKIFLRHKSTSESKKHSAEDYLISEKTKLAKS-YSNVPTSSPSVMGAYPNAQNQWAAGYGSQPQGWPQVAQSQGQQWNPSYAQQAAYGSYGSSYTQPQIPTTVPQTA---AYGAYPPTYPVQAFPQQGYAQPATSVALNPAQQTASV 869    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BKR4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8543419.1}))

HSP 1 Score: 734.947 bits (1896), Expect = 0.000e+0
Identity = 446/853 (52.29%), Postives = 524/853 (61.43%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTST--EYASTDNYNENAASD---------------AVTSDAGVAGN---------VPSKISAGSGE----------------MKVLTD-----------VMVTDNTSEHTQNPT--DENGNQNLAKEEVPTKQMMLVANSANVGE-NGTIAVANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTV--QEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGY---SSSPSVMGAYQSTKNQWPAGYGAQPQAWP---QATQAQAQNWTPAYT-QAAYGG--AYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQ---AQQTYVQAATPAPLAPG 671
            MGDSE VV QT++V+ Y S     A   + + NAA D               AVTS   +A +         VP   S G G                 +K  TD           +   +N SEH+      D + N N   E      + +  N + + + +G+ +V    + D  ALSAEE+RLWSIVRANSL+F+AWTALIEETE++AE +I ++RKVYDAFLAEFPLCYGYWKK                    A+QGVTYSVD+WLHYCVFAI+TYGDPDT+RRLFERGL YVG+D+LS+ +WDKYIEYEYT+QEWSRLAMIYTRILE+PN+ LDRYF       SF ELVA RPLSELRTAEE AAAAA  +    QEIE EVHPNAVE S K VSAG+ +A+ELEKYI IREEMY KAKEF SKIIGFE AI+RPYFHVRPLN  EL NW+ YLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA NAL  ATQVFVK                                                   G  EDACS+YEQA+AIEKGKEHSQ LP LFAQY+RF++L                           A+IHLESIQS PKQI++LDSL++KF  P+P+NP AAS  +REELSSIFLE             A+DRH++LF  H++ SESK RHA++ L SDK KLAKS     S++PSVMGAY S +NQW  GY  QPQAWP   QATQAQ Q W P YT QAAYG    YG++Y  PQ+ TS+PQ A   AYGAYPP Y  Q    QQ Y Q+ATPA + P 
Sbjct:    1 MGDSEAVVAQTSAVVGYASAGYSSADYSDASSNAAPDGGAFAIGATKDVAAPAVTSAGDLAASTVTTNAVNSVPDSSSLGGGNEYNKDVNSATQDAPTTLKYDTDTSYGAVDTSQNLTGLENASEHSFQAAGYDSSVNGNNVSEARNNMVVGISENGSTLDDVHGSSSVHQ--VVDDSALSAEEDRLWSIVRANSLDFNAWTALIEETEKMAEDNIFRIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAIQGVTYSVDIWLHYCVFAISTYGDPDTIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQEWSRLAMIYTRILESPNQQLDRYFN------SFNELVASRPLSELRTAEEAAAAAAANSEASAQEIEGEVHPNAVEQSAKLVSAGLRDADELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNIAELENWHIYLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALARATQVFVKRQPEIHIFAARFKEHCGDIPGARAAYQLVHTEISPGLLEAIIKHANMEHRLGNLEDACSVYEQAIAIEKGKEHSQALPLLFAQYSRFLHLVSGNLEKAREVLVQALENVQLSKPLLEALIHLESIQSLPKQIDYLDSLVDKFIVPSPENPNAASINEREELSSIFLEFLDLFGDARCIKKADDRHAKLFLHHRNISESKKRHAEEFLVSDKTKLAKSYSGIPSTAPSVMGAYPSAQNQWTTGYNLQPQAWPQATQATQAQGQQWNPGYTQQAAYGAYSGYGSSYTNPQLPTSLPQTA---AYGAYPPTYPAQPGFPQQNYAQSATPAAVTPA 842    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UUW0 ((pre-mRNA-processing factor 39 isoform X1 {ECO:0000313|RefSeq:XP_027094161.1, ECO:0000313|RefSeq:XP_027094170.1}))

HSP 1 Score: 734.947 bits (1896), Expect = 0.000e+0
Identity = 429/841 (51.01%), Postives = 506/841 (60.17%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEY--------------ASTDNYNENAASDAVT---------------------SDAGVAGNVPSKISAGSGEMKVLTDVMVTDNTSEHTQNPTDENGNQNLAKEEVPTKQMMLVANSANVG--ENGTIA-------VANDFMSDAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTT--VQEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGY-SSSPSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYT-QAAYG--GAYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQA--QQTYVQAATPAPLAPGSSTATC 677
            M DSE VV QT+S  A+T+  Y              A+T N  +  A+ A T                     SD G + +V    S+     K+      TD+      +P+    N N+  E         V NS + G  ENG I+       V ++   D  ALS EEERLWSIVRANSL+F+AW ALIEETE+++EG+I K+RKVYDAFL EFPLCYGYWKK                    AVQGVTYSVDMWLHYC+FAI+TYGDP+T+RRLFERGL YVG+D+LS+ +WDKYIEYEYT+Q+WSR+A++YTR+LENPN+ LDRYF        F+ELVA RPLSELRT EE AAAA   +    QE+E E  PNAVE S KPVSA + +AEELEKYI +REEMY KAKEF SKIIGFE AI+RPYFHVRPL+ VEL NW+NYL F+E   D  KVVKLYERCLI CANYP+YWIRY+  MEA GS DLAENAL  ATQVFVK                                                   G  EDACSLYEQA+AIEKGKEHSQTLP LFAQY+RF++L                           A+IH ES+QS PK++++LDSL++KF  P  DNP  AS  +REELSSIFLE             A+DRH++LF  H S+ ESK R A+D L SDK KLAKS   SS+PSVMGAY + +NQWPAGYG  PQ WPQ  Q QAQ WTP Y  Q+AY   GAYG  Y Q QV  SVPQ A   AYGAYPP Y  QA  QQ+Y Q AT A L P   ++  
Sbjct:    1 MADSEAVVAQTSSATAFTAAGYPPVYNDTNSDASGAAATKNVEDLTATGATTTMEDSNISFGATELTNYIADGSDLGASHHVAGTNSSLEASDKLSGPTSATDSFQPSLPDPSK---NGNIVNE---------VGNSTSTGVAENGIISDDTHGSNVVHELF-DGSALSDEEERLWSIVRANSLDFNAWIALIEETEKMSEGNILKIRKVYDAFLVEFPLCYGYWKKYADHEARLGSMDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYTQQDWSRVALLYTRVLENPNQQLDRYFE------GFKELVANRPLSELRTGEEAAAAALENSENGGQEVEGENLPNAVEQSSKPVSASLKDAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLSGVELENWHNYLHFIEGVGDLSKVVKLYERCLIACANYPEYWIRYVRCMEASGSMDLAENALARATQVFVKRQPEIHLFAARFREQHADVAGARSAYQLVHTEISPGLLEAIIKHANMEHRFGNLEDACSLYEQAIAIEKGKEHSQTLPFLFAQYSRFLFLVAGKVEKARDILDQALENTLLSKPLIEALIHFESVQSLPKRMDYLDSLVDKFIVPTADNPNVASITEREELSSIFLEFLDLFGDAESIKKADDRHAKLFLPHGSSPESKKRLAEDYLISDKTKLAKSSLPSSAPSVMGAYPNAQNQWPAGYGL-PQGWPQVAQGQAQQWTPGYAQQSAYSAYGAYGTGYPQQQVPASVPQNA---AYGAYPPTYPTQAFGQQSYAQPATAATLTPAPQSSAV 818    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7CY45 ((Tetratricopeptide repeat (TPR)-like superfamily protein putative isoform 1 {ECO:0000313|EMBL:KAF5738990.1}))

HSP 1 Score: 733.406 bits (1892), Expect = 0.000e+0
Identity = 420/802 (52.37%), Postives = 494/802 (61.60%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYAST--DNYNENAASDA-VTSDAGVAGNVPSKISAGSGEMKVLTDVMVTDNTSEHTQNPTDENGNQNLAKEEVPTKQMMLVANSANVGENGTI--------AVANDFMSDA---------PALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAA-AVGTTVQEIEEEVHPNAVE-SPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYSSSP----SVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYTQ-AAYGG--AYGNAYAQPQVQTSVPQAAAATAYGAYPPAYTVQ---AQQTY 659
            MGDSETVV +T++V  Y S  Y ST   + N NA  +A   +   V G     I A S   +    V       E  Q    E    ++A  E+        A   N   NGTI        +  N  + DA         PA+SAEEERLWSIVRANSL+F+AWTALIEETE+V E +I K+RKVYD FLAEFPLCYGYWKK                    AV GVTYSVD+WLHYC+F+INTYGDPDT+RRLFERGL YVG+D+LSY +WDKYIEYEY ++EWSR+A IYTRILE PN+ LDRYFT      SF+E  A RPLSELRT+EE AA A A       + E  HP+A E S KPVSAG+TEAEEL+KY+ IREEMY KAKEF SKIIGFE AI+RPYFHVRPLN  EL NW+NYLDF+E E DF KVVKLYERCLI CANYP+YWIRY+L MEA GS DLA+NAL  A+QVFVK                                                   G  EDA SLYEQ ++IEKGKEHSQTLP L+AQY+RFVYL                           A+IH ESIQ + KQI++LDSL++KF  P+ D+   AS +++EE+SSIF+E             AEDRH++ F  H+STSE + RHA+D L S+KAK+AK  YSS+P    S+MGAY S +NQW AGY  QPQAWP ATQAQ Q WTP Y+Q AAY G   Y ++Y  PQV TSVPQ A   AYGAYPPAY VQ    QQ+Y
Sbjct:    1 MGDSETVVAETSTVTGYASAAYTSTGYSDPNSNATPEAPAYAGYAVLGGDAYNIDASSAGQEAHAHVGY-----ESKQGVGTEGAACHVADYELGPTAEASQAAVYNSSVNGTIDSDVGKGTSAENGIVVDAEQQFVGGSVPAMSAEEERLWSIVRANSLDFNAWTALIEETEKV-EDNIGKIRKVYDEFLAEFPLCYGYWKKYADHEARIGSMDKVVEVYERAVLGVTYSVDIWLHYCIFSINTYGDPDTIRRLFERGLAYVGTDYLSYPLWDKYIEYEYMREEWSRIAAIYTRILETPNQQLDRYFT------SFKEFAASRPLSELRTSEEVAAVADASSENGGHLNEGEHPDAAEPSSKPVSAGLTEAEELDKYVAIREEMYKKAKEFDSKIIGFEAAIRRPYFHVRPLNVAELENWHNYLDFIEREGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLADNALARASQVFVKRQPEIHIFAARFKEQNGDIPGARAAYQLVHVEISPGLLEAIIRHANMEHRLGNLEDAISLYEQVISIEKGKEHSQTLPLLYAQYSRFVYLVLGNAEKARDILVKATEDLQLSKPLLEALIHFESIQPSSKQIDYLDSLVDKFILPSTDSSNPASAVEKEEISSIFIEFLGLYGDTQSIKRAEDRHAKFFLPHRSTSEFRKRHAEDYLASEKAKVAKP-YSSAPSPAQSLMGAYPSAQNQWAAGYNLQPQAWPPATQAQGQQWTPGYSQPAAYSGYSGYASSYTTPQVPTSVPQTA---AYGAYPPAYPVQPAFPQQSY 786    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3BLN8 ((Uncharacterized protein {ECO:0000313|EMBL:PHU07388.1}))

HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 410/806 (50.87%), Postives = 502/806 (62.28%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAGVAGNVPSKISAGSGEMKVLT----DVMVTDNTSEHTQNPTDENGNQN-----LAKEEVPTKQMMLVANSANVGEN-------GTIAVANDFMS-------------DAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTVQEIEEEVHPNAVESPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYSSS-PSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYT-QAAYG--GAYGNAYAQPQV-QTSVPQAAAATAYGAYPPAYTVQA--QQTY 659
            MG+SETVV QT+SV  Y S  Y+S    N + A   ++SDAG AG++ +    G+GE+        +   TD  S   +  T  + + +     LA   V + Q+    +SAN G N       G + +A + ++             D   LS EEERLWSIVR NSL+F AWTALIEETE+++EG+I K+RKVYDAFLAEFPLCYGYWKK                    AVQGVTYSVDMWLHYCVFAI+TYGDP T+RRLFERGL+YVG+D+LS+ +WDKY+EYEYT+Q WS +A IYT+IL+NPN+ LDRYF        F+ELVA RPLSELRT+EE AAA   G   +++E EV+P + ES K VSA + +AEELE YI IREEMY KAKEF SKI+GFE AI+RPYFHVRPLN  EL NW+NYLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+  ME  GS DLA+NAL  ATQVFVK                                                   G  EDACS+YEQA+AIEKGKEHSQ+LP LFAQY+RF+YL                           A+IHLESIQS PK+++ LDSL++KF  P+ +NP  +S  +REELSSIFLE             A+DRH++LF  H+++S+SK R A+D + S+K KLAKS  +++ PSV+GAY   +NQWPAGYG Q Q WPQATQAQ+Q W P Y  QAAYG  G+YG  Y  PQ    SVP +A    YGAYP  Y  QA  QQ Y
Sbjct:    1 MGESETVVAQTSSVTDYISAGYSSI---NPDDAGAHLSSDAGNAGDLATACPNGAGELASTNIEAGNPYTTDQVSTQQEGATAMSYDPSQDLAALADAPVGSSQVTDCESSAN-GNNTAEERDIGAVGIAENGIASDVHGSSNMHQPEDGLVLSPEEERLWSIVRTNSLDFSAWTALIEETEKMSEGNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSGDKVVEVYERAVQGVTYSVDMWLHYCVFAISTYGDPGTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQILQNPNQQLDRYFE------GFKELVASRPLSELRTSEEAAAATDAGG--EQVEGEVNPGS-ESSKLVSASLKDAEELEMYIAIREEMYKKAKEFDSKIVGFETAIRRPYFHVRPLNVAELENWHNYLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVSCMETSGSLDLADNALARATQVFVKRQPAIHLFAARLREQRGDIPGARAAYQLVHAEISPGLVEAIVKHANMERRLGNLEDACSIYEQAIAIEKGKEHSQSLPLLFAQYSRFMYLVSGKVEKTREILDQAVENVQLSKPLLEALIHLESIQSLPKRVDLLDSLVDKFLVPSLENPNVSSVDEREELSSIFLEFLDLFGDTPSIKKADDRHAKLFLRHRTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPSVVGAYPGAQNQWPAGYGVQGQTWPQATQAQSQQWNPGYAQQAAYGAYGSYGTGYPPPQAPAASVPSSA---GYGAYPSTYAAQAFPQQNY 790    
BLAST of DCAR_004701 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8E3Q9 ((Uncharacterized protein {ECO:0000313|EMBL:PHT72836.1}))

HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0
Identity = 411/808 (50.87%), Postives = 501/808 (62.00%), Query Frame = 0
 
Query:    1 MGDSETVVTQTTSVMAYTSTEYASTDNYNENAASDAVTSDAGVAGNVPSKISAGSGEMKVLT----DVMVTDNTSEHTQNPTDENGNQN-----LAKEEVPTKQMMLVANSAN--------------VGENGTIAVANDFMS--------DAPALSAEEERLWSIVRANSLEFDAWTALIEETERVAEGHISKVRKVYDAFLAEFPLCYGYWKK--------------------AVQGVTYSVDMWLHYCVFAINTYGDPDTVRRLFERGLLYVGSDFLSYTMWDKYIEYEYTKQEWSRLAMIYTRILENPNKHLDRYFTRYNSYYSFRELVAQRPLSELRTAEETAAAAAVGTTVQEIEEEVHPNAVESPKPVSAGITEAEELEKYITIREEMYNKAKEFQSKIIGFERAIKRPYFHVRPLNPVELANWNNYLDFVEAEDDFQKVVKLYERCLIDCANYPKYWIRYILHMEARGSTDLAENALGHATQVFVK---------------------------------------------------GKAEDACSLYEQAVAIEKGKEHSQTLPQLFAQYTRFVYL---------------------------AVIHLESIQSTPKQIEFLDSLINKFNAPNPDNPCAASFIDREELSSIFLE-------------AEDRHSELFFVHKSTSESKIRHADDILQSDKAKLAKSGYSSS-PSVMGAYQSTKNQWPAGYGAQPQAWPQATQAQAQNWTPAYT-QAAYG--GAYGNAYAQPQV-QTSVPQAAAATAYGAYPPAYTVQA--QQTY 659
            MG+SETVV QT+SV  Y S  Y+S    N + A   ++SDAG AG++ +    G+GE+        +   TD  S   +  T  + + +     LA   V + Q+    +SAN              + ENG   +A+D           D   LS EEERLWSIVR NSL+F AWTALIEETE+++EG+I K+RKVYDAFLAEFPLCYGYWKK                    AVQGVTYSVDMWLHYCVFAI+TYGDP T+RRLFERGL+YVG+D+LS+ +WDKY+EYEYT+Q WS +A IYT+IL+NPN+ LDRYF        F+ELVA RPLSELRT+EE AAA   G   +++E EV+P + ES K VSA + +AEELE YI IREEMY KAKEF SKI+GFE AI+RPYFHVRPLN  EL NW+NYLDF+E  DDF KVVKLYERCLI CANYP+YWIRY+  ME  GS DLA+NAL  ATQVFVK                                                   G  EDACS+YEQA+AIEKGKEHSQ+LP LFAQY+RF+YL                           A+IHLESIQS PK+++ LDSL++KF  P+ +NP  +S  +REELSSIFLE             A+DRH++LF  H+++S+SK R A+D + S+K KLAKS  +++ PSV+GAY   +NQWPAGYG Q Q WPQATQAQ+Q W P Y  QAAYG  G+YG  Y  PQ    SVP +A    YGAYP  Y  QA  QQ Y
Sbjct:    1 MGESETVVAQTSSVTDYISAGYSSI---NPDDAGAHLSSDAGNAGDLATACPNGAGELASTNIEAGNPYTTDQVSTQQEGATAMSYDPSQDLAALADAPVGSSQVTDCESSANGNNTAEERDIAAVGIAENG---IASDVHGSSNMHQPEDGLVLSPEEERLWSIVRTNSLDFSAWTALIEETEKMSEGNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAVQGVTYSVDMWLHYCVFAISTYGDPGTIRRLFERGLVYVGTDYLSFPLWDKYLEYEYTQQAWSNVAAIYTQILQNPNQQLDRYFE------GFKELVASRPLSELRTSEEAAAATDAGG--EQVEGEVNPGS-ESSKLVSASLKDAEELEMYIAIREEMYKKAKEFDSKIVGFETAIRRPYFHVRPLNVAELENWHNYLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVSCMETSGSLDLADNALARATQVFVKRQPAIHLFAARLREQRGDIPGARAAYQLVHAEISPGLVEAIVKHANMERRLGNLEDACSIYEQAIAIEKGKEHSQSLPLLFAQYSRFMYLVSGKVEKTREILDQAVENVQLSKPLLEALIHLESIQSLPKRVDLLDSLVDKFLVPSLENPNVSSVDEREELSSIFLEFLDLFGDTPSIKKADDRHAKLFLRHRTSSDSKKRQAEDYIVSEKTKLAKSAVAATNPSVVGAYPGAQNQWPAGYGVQGQTWPQATQAQSQQWNPGYAQQAAYGAYGSYGTGYPPPQAPAASVPSSA---GYGAYPSTYAAQAFPQQNY 790    
Match NameStatsDescription
A0A5B6ZHB5E-Value: 0.000e+0, PID: 53.76(Putative pre-mRNA-processing factor 39 {ECO:00003... [more]
A0A7J0FN27E-Value: 0.000e+0, PID: 50.35(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A2R6QSF2E-Value: 0.000e+0, PID: 49.88(Pre-mRNA-processing factor like {ECO:0000313|EMBL... [more]
A0A6P6UTX3E-Value: 0.000e+0, PID: 52.73(pre-mRNA-processing factor 39 isoform X2 {ECO:000... [more]
A0A2R6PQ16E-Value: 0.000e+0, PID: 50.18(Pre-mRNA-processing factor like {ECO:0000313|EMBL... [more]
A0A5J5BKR4E-Value: 0.000e+0, PID: 52.29(Uncharacterized protein {ECO:0000313|EMBL:KAA8543... [more]
A0A6P6UUW0E-Value: 0.000e+0, PID: 51.01(pre-mRNA-processing factor 39 isoform X1 {ECO:000... [more]
A0A7J7CY45E-Value: 0.000e+0, PID: 52.37(Tetratricopeptide repeat (TPR)-like superfamily p... [more]
A0A2G3BLN8E-Value: 0.000e+0, PID: 50.87(Uncharacterized protein {ECO:0000313|EMBL:PHU0738... [more]
A0A1U8E3Q9E-Value: 0.000e+0, PID: 50.87(Uncharacterized protein {ECO:0000313|EMBL:PHT7283... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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