Resource Type:
Polypeptide
Name:
DCAR_008779
Identifier:
DCAR_008779.mRNA-protein
Sequence:
MRGVSYVLSCSRHVRSTQLCRPVSNFSFHRPIVTFSYTQLQNMIPLVPDS
LCGMRSFCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDED
YMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKR
RSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYI
VIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQH
ADEAAVENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKE
LEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKL
IDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHE
KCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTV
LNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVES
YLL*
Sequence Length:
504
Sequence Checksum:
43eae12648d5a5008b998ddd1cad3171
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_008779, derives from mRNA, DCAR_008779. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WJ65 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 348/508 (68.50%), Postives = 412/508 (81.10%), Query Frame = 0
Match: A0A4V3WJ65 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 348/508 (68.50%), Postives = 412/508 (81.10%), Query Frame = 0
Query: 7 VLSCSRHVRSTQLCRPVSNFSFHRPIVT-------FSYTQLQNMIPLVPDSLCGMRSFCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEAA----VENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
++SC H + T + P + H+ I T F TQL+ ++ RSF +A L A VER + +EREE+ R+GLD ADIDAED+EDYMGVGPLI+KLEK K+K+ +L+M YEEPTDS+S EDD+RFS E K+R++ FEKKF RH+ELLK+FT+++TLD++ +WMN++DKFEQKH +LRPEY VIGELMNR+KE+TGKD+FLLQ KLNRA+RLV+WKEA DPNNP NYG H A +EN FEKE+ + L++DDD EFD MKERDDILLEKL AIDK+LE+KL +LDHTFGKKGKVLE+EIRDLAEERNSLTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTAMLACGNY GV+GFAKAKGPA+PVA+QKA+EKCFQNLHY+ERHEEHTIAHAVQTSYKKTK+YLWP T TGMKAGR VQT+L+LAG KNVKSKVVGSRNP NTVKA+FKALNAIETPKDVQ+KFGRTVVESYLL
Sbjct: 1 MVSC--HSQPTTIDSPRRIPNLHQHITTPPLFPQIFPPTQLRRRFRFPAEN----RSFS--SARTIQELLADVERSKHKEREEKKRIGLDAADIDAEDEEDYMGVGPLIEKLEKEKLKNSGADQLNM-YEEPTDSES-EDDERFSPEDIKKRAQVFEKKFKRHEELLKNFTEAETLDDAFKWMNKIDKFEQKHLQLRPEYRVIGELMNRMKESTGKDRFLLQQKLNRAIRLVEWKEAYDPNNPANYGVVHHEQMGASADLLENAGFEKEKQMIQGGLDEDDDEEFDDMKERDDILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYQGVVGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKLYLWPAPTTTGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPKDVQEKFGRTVVESYLL 498
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AWL7 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 321/422 (76.07%), Postives = 373/422 (88.39%), Query Frame = 0
Match: A0A5J5AWL7 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 321/422 (76.07%), Postives = 373/422 (88.39%), Query Frame = 0
Query: 87 GLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEAA----VENEEFEKE-QLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
GLD ADIDAED+EDYMGVGPLI+KLEK K+K + MYEEPTDS+S EDD+RF+ EA K+R+++FEKKF RH+ELLK+F +++TLD++ +WMN++DKFEQKHF+LRPEY VIGELMNRLKEATGKD+FLLQ KLNRA+RLV+WKEA DPNNP N+G QH +E+ FEKE Q+ + A L+DDDD EF+ MKE+DDILLEKL AIDK+LE KL +LDHTFGKKGKVLE+EIRDLAEERNSLTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTAMLACGNY+GV+GFAKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHAVQT+YKKTKVYLWP T TGMKAGR +QT+LNLAG KNVKSKV+GSRNP NTVKALFKALNAIETPKDVQ+KFGRTVVESYLL
Sbjct: 127 GLDAADIDAEDEEDYMGVGPLIEKLEKEKLKDAGDLN---MYEEPTDSES-EDDERFTPEAIKKRTDEFEKKFKRHEELLKNFANAETLDDAFKWMNKIDKFEQKHFRLRPEYQVIGELMNRLKEATGKDRFLLQQKLNRAIRLVEWKEAYDPNNPANFGVIQHEQVGPSVDLLEHAGFEKEKQIIQGAGLDDDDDEEFNDMKEKDDILLEKLNAIDKKLEDKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAVQTTYKKTKVYLWPASTRTGMKAGRTIQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKDVQEKFGRTVVESYLL 544
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZSE6 ((uncharacterized protein LOC107414724 {ECO:0000313|RefSeq:XP_015878378.1}))
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 330/506 (65.22%), Postives = 400/506 (79.05%), Query Frame = 0
Match: A0A6P3ZSE6 ((uncharacterized protein LOC107414724 {ECO:0000313|RefSeq:XP_015878378.1}))
HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 330/506 (65.22%), Postives = 400/506 (79.05%), Query Frame = 0
Query: 5 SYVLSCSRHVRSTQLCRPVSN---FSFHRPIVTFSYTQLQNMIPLVPDSLCGMRSFCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEAA----VENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
S S SR + L P + FS R I T +Q P + S+ ++ L A+VE+ER R+RE+R R GLDT DID ED+EDYMGV PLI+KLEK K+K+ + MYEEPTDSDSD+DD+RF+ +A ++R ++F++K RH+ELL +F +S+TLD++ +WMN++DKFEQKHF LRPEY VIGEL+NR+K A GKDKF+LQ KLNRAMRLV+WKEA DPN+P NYG QH +E+ FEKE+ + ++DDD+ EFD MKE+DDILLEKL AIDK+LE+KL +LDHTFGKKGKVLE+EIRDLAEERNSLTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTA+LACGNY+GV+G+AKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHA+QT+YKKTKVYLWP T TGMKAGR VQT+LNLAG KNVKSKVVGSRNP NTVKA+FKALN IETPKDVQ+KFGRTVVE YLL
Sbjct: 4 SQPFSWSRLLLRQTLKNPTKSPLHFSPRRYIYTLHLPTVQTPKPWPTGRISCSFSYSTVSSRAIQDLLAEVEKERHRDREQRKRAGLDTKDIDQEDEEDYMGVMPLIEKLEKEKLKNTGDLN---MYEEPTDSDSDQDDERFTRDAVQKRFDEFQRKAKRHQELLNNFVESETLDDTFKWMNKIDKFEQKHFYLRPEYRVIGELINRVKVAEGKDKFILQQKLNRAMRLVEWKEAYDPNSPANYGVIQHEQVGPSVDLLEHAGFEKEKAIIQG-VDDDDEEEFDDMKEKDDILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAILACGNYHGVVGYAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAIQTAYKKTKVYLWPASTTTGMKAGRTVQTILNLAGFKNVKSKVVGSRNPHNTVKAVFKALNEIETPKDVQEKFGRTVVEKYLL 505
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5YZZ5 ((uncharacterized protein LOC111296212 isoform X2 {ECO:0000313|RefSeq:XP_022746118.1}))
HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 328/486 (67.49%), Postives = 394/486 (81.07%), Query Frame = 0
Match: A0A6P5YZZ5 ((uncharacterized protein LOC111296212 isoform X2 {ECO:0000313|RefSeq:XP_022746118.1}))
HSP 1 Score: 641.343 bits (1653), Expect = 0.000e+0
Identity = 328/486 (67.49%), Postives = 394/486 (81.07%), Query Frame = 0
Query: 24 SNFSFHRPIVTFS-YTQLQNMIPLVPDSLCGMRS-FCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQH----ADEAAVENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
S+FSF R I TFS +T Q + C + F ++A L A+VERE+QRER++R GLD DID ED EDYMGV PLI+KLEK K+K P+LD+ YEEPTDSDS+EDD+ F+AEA ++R E+ +KK RH+ELLK+F +++TLD+ +WMN++DKFE KHFKLR EY VIG+LMNRLK A ++KF+LQ KLNRAMRLV+WKEA DPNNP NYG QH + VEN FEKE ++ DDDD FD MKE+DDILLEKL IDK+LE++L +LDHTFGKKGK+LE+EIRDLAEERN+LTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTA+LACGNY+GV+G+AKAKGPA+P+A+QKA+EKCFQNLHYIERHEEHTIAHA+QT+YKKTKVYLWP T TGMKAGR VQT+LNLAG KN+KSKVVGSRNP NTVKALFKALNA+ETP+D+Q+KFGRTVVE YLL
Sbjct: 63 SHFSFSRKISTFSHFTTYQTPKSSLSSQKCRFSTAFSSRAVE---DLLAEVEREKQRERDDRKTKGLDAKDIDEEDQEDYMGVMPLIEKLEKEKLKD--TPDLDL-YEEPTDSDSEEDDEWFAAEAKEKRVEELQKKLKRHEELLKNFAEAETLDDCFKWMNKIDKFEDKHFKLRAEYRVIGDLMNRLKVAEDEEKFILQQKLNRAMRLVEWKEAYDPNNPANYGVIQHEQINSSVDLVENAGFEKE---KQMIHGDDDDEVFDDMKEKDDILLEKLNVIDKKLEERLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTALLACGNYHGVVGYAKAKGPAVPIALQKAYEKCFQNLHYIERHEEHTIAHAIQTAYKKTKVYLWPAPTTTGMKAGRTVQTILNLAGFKNIKSKVVGSRNPHNTVKALFKALNAVETPQDIQEKFGRTVVEKYLL 539
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C1C9 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 317/422 (75.12%), Postives = 371/422 (87.91%), Query Frame = 0
Match: A0A5B7C1C9 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 317/422 (75.12%), Postives = 371/422 (87.91%), Query Frame = 0
Query: 87 GLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEAA----VENEEFEKE-QLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
GLD ADIDAED+EDYMGVGPLI+KLEK K+K +L+ YEEPTDS+S EDD+RF+ EA ++R+++FEKKF RH+ELLK+F ++ TLD++ +WMN++DKFEQKHF LRPEY VIGELMNRLK ATGKD+FLLQ KLNRA+RLV+WKEA DPNNP NYG QH +E+ FEKE Q+ + L++DDD EF+ MKE+DDILLE+L AIDK+LE++L +LDHTFGKKGKVLE+EIRDLAEERNSLTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTAMLACGNY+G++GFAKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHAVQTSYKKTKVYLWP T TGMKAGR VQT+LNLAG KNVKSKV+GSRNP NTVKALFKALNAIETPKDVQ+KFGRTVVESYLL
Sbjct: 124 GLDAADIDAEDEEDYMGVGPLIEKLEKEKLKDTGG-DLNS-YEEPTDSES-EDDERFTPEAIQKRTDEFEKKFKRHEELLKNFAEADTLDDAFKWMNKIDKFEQKHFGLRPEYQVIGELMNRLKGATGKDRFLLQQKLNRAIRLVEWKEAYDPNNPANYGLIQHQQVGPSVDLLEHAGFEKEKQIIQGTGLDEDDDEEFNDMKEKDDILLEQLNAIDKKLEERLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGIVGFAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAVQTSYKKTKVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVIGSRNPHNTVKALFKALNAIETPKDVQEKFGRTVVESYLL 542
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5NTC1 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 339/491 (69.04%), Postives = 401/491 (81.67%), Query Frame = 0
Match: A0A2H5NTC1 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 339/491 (69.04%), Postives = 401/491 (81.67%), Query Frame = 0
Query: 20 CRPVSNFSFHRPIVTFSYTQL-QNMIPLVPDSLCGMRSFCNKAASIPLA--LQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEA----AVENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
+P+ +SF R I TFS+ + Q P S+ F +A +A L A+VERE+ RERE R R GLDT DID ED+EDYMGVGPLI+KLEK ++K + L YEEPTDSDSDEDD+RFS +A +R + F+KKF RHKELL++FT+++T DE+ +WMN++DKFEQKHF LR EY VIGELMNRLKEA GKDKF+LQ KLNRAMRLV+WKE DPNNP NYG +H AVEN E ++E+ + ++DDD+ EFD MKERDDILLE+L AIDK+LE+KL +LDHTFGKKGK+LE+EIRDLAEERN+LTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTAMLACGNY+GV+GFAKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHA+QTSYKKTKVYLWP T TGMKAGR VQT+L+LAG KNVKSKVVGSRNP NTVKALFKALNAIETPKDV++KFGRTVVE YLL
Sbjct: 64 AKPI--YSFSRKISTFSHFRYNQTSKP----SILLKSHFSTGSAYSRVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNL---YEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKYLL 545
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4VE22 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 339/491 (69.04%), Postives = 401/491 (81.67%), Query Frame = 0
Match: V4VE22 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 339/491 (69.04%), Postives = 401/491 (81.67%), Query Frame = 0
Query: 20 CRPVSNFSFHRPIVTFSYTQL-QNMIPLVPDSLCGMRSFCNKAASIPLA--LQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHADEA----AVENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
+P+ +SF R I TFS+ + Q P S+ F +A +A L A+VERE+ RERE R R GLDT DID ED+EDYMGVGPLI+KLEK ++K + L YEEPTDSDSDEDD+RFS +A +R + F+KKF RHKELL++FT+++T DE+ +WMN++DKFEQKHF LR EY VIGELMNRLKEA GKDKF+LQ KLNRAMRLV+WKE DPNNP NYG +H AVEN E ++E+ + ++DDD+ EFD MKERDDILLE+L AIDK+LE+KL +LDHTFGKKGK+LE+EIRDLAEERN+LTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTAMLACGNY+GV+GFAKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHA+QTSYKKTKVYLWP T TGMKAGR VQT+L+LAG KNVKSKVVGSRNP NTVKALFKALNAIETPKDV++KFGRTVVE YLL
Sbjct: 64 AKPI--YSFSRKISTFSHFRYNQTSKP----SILLKSHFSTGSAYSRVAQDLLAEVEREKGREREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNL---YEEPTDSDSDEDDERFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRVIGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVENAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTAMLACGNYHGVVGFAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKYLL 545
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5UBZ7 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 336/504 (66.67%), Postives = 408/504 (80.95%), Query Frame = 0
Match: A0A6J5UBZ7 (S5 DRBM domain-containing protein {ECO:0000259|PROSITE:PS50881})
HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 336/504 (66.67%), Postives = 408/504 (80.95%), Query Frame = 0
Query: 5 SYVLSCSRHVRSTQLCRPV-SNFSFHRPIVTFSYTQLQNMIPLVPDSLCGMRSFCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHAD-EAAV---ENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
S S SR + + + P + F R I T + L + P S G + ++ L A+VERE+QRERE+R R GLDT DID ED+EDY+GV PLI+KL+K K+K +L++ YEEPTDSDSDEDD+RF+ +A K+R ++F+KKF RH+ELLK+FT++ TLD++ +WMN++DKFEQKHF+LRPEY VIGEL+NRLK A GKDKF+LQ KLNRAMRLV WKEA DPNNP NYG QH E++V E+ FEKE+ R ++DDDD EF+ MKE+DDILLEKL AIDK+LE+KL +LDHTFGKKGKVLE+EIRDLAEERN LTE+KRRPLYRKGFDVK+I+V+RTCKVTKGG++ KY+A+LACGNY+GV+G+AKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHA+QT+YKKTKVYLWP T TGMKAGR VQT+LNLAG KNVKSKVVGSRNP NTVKALFK+LNAIETPKDVQ+KFGRTVVE YLL
Sbjct: 4 SQAFSWSRLILNQAIKNPTKAPLRFSRKISTSPHF-LTSHAPKPSFSFSGKTHYSTVSSRAAQDLLAEVEREKQREREQRKRTGLDTKDIDQEDEEDYLGVIPLIEKLDKEKLKGDTG-DLNL-YEEPTDSDSDEDDERFTPDAVKKRFDEFQKKFTRHEELLKNFTEAGTLDDAFKWMNKIDKFEQKHFRLRPEYRVIGELINRLKVAEGKDKFILQQKLNRAMRLVQWKEAYDPNNPANYGVIQHEQVESSVDLLEHAGFEKEKQIIRG-VDDDDDEEFNDMKEKDDILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNDLTEKKRRPLYRKGFDVKIINVNRTCKVTKGGQVVKYSAILACGNYHGVVGYAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAIQTTYKKTKVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVVGSRNPHNTVKALFKSLNAIETPKDVQEKFGRTVVEKYLL 503
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Z0L9 ((uncharacterized protein LOC111296212 isoform X1 {ECO:0000313|RefSeq:XP_022746115.1, ECO:0000313|RefSeq:XP_022746117.1}))
HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 328/493 (66.53%), Postives = 394/493 (79.92%), Query Frame = 0
Match: A0A6P5Z0L9 ((uncharacterized protein LOC111296212 isoform X1 {ECO:0000313|RefSeq:XP_022746115.1, ECO:0000313|RefSeq:XP_022746117.1}))
HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 328/493 (66.53%), Postives = 394/493 (79.92%), Query Frame = 0
Query: 24 SNFSFHRPIVTFS-YTQLQNMIPLVPDSLCGMRS-FCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTD-------SKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQH----ADEAAVENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
S+FSF R I TFS +T Q + C + F ++A L A+VERE+QRER++R GLD DID ED EDYMGV PLI+KLEK K+K P+LD+ YEEPTDSDS+EDD+ F+AEA ++R E+ +KK RH+ELLK+F + ++TLD+ +WMN++DKFE KHFKLR EY VIG+LMNRLK A ++KF+LQ KLNRAMRLV+WKEA DPNNP NYG QH + VEN FEKE ++ DDDD FD MKE+DDILLEKL IDK+LE++L +LDHTFGKKGK+LE+EIRDLAEERN+LTE+KRRPLYRKGFDVKLIDV+RTCKVTKGG++ KYTA+LACGNY+GV+G+AKAKGPA+P+A+QKA+EKCFQNLHYIERHEEHTIAHA+QT+YKKTKVYLWP T TGMKAGR VQT+LNLAG KN+KSKVVGSRNP NTVKALFKALNA+ETP+D+Q+KFGRTVVE YLL
Sbjct: 63 SHFSFSRKISTFSHFTTYQTPKSSLSSQKCRFSTAFSSRAVE---DLLAEVEREKQRERDDRKTKGLDAKDIDEEDQEDYMGVMPLIEKLEKEKLKD--TPDLDL-YEEPTDSDSEEDDEWFAAEAKEKRVEELQKKLKRHEELLKNFAEAVTFSHLTETLDDCFKWMNKIDKFEDKHFKLRAEYRVIGDLMNRLKVAEDEEKFILQQKLNRAMRLVEWKEAYDPNNPANYGVIQHEQINSSVDLVENAGFEKE---KQMIHGDDDDEVFDDMKEKDDILLEKLNVIDKKLEERLAELDHTFGKKGKLLEEEIRDLAEERNALTEKKRRPLYRKGFDVKLIDVNRTCKVTKGGQVVKYTALLACGNYHGVVGYAKAKGPAVPIALQKAYEKCFQNLHYIERHEEHTIAHAIQTAYKKTKVYLWPAPTTTGMKAGRTVQTILNLAGFKNIKSKVVGSRNPHNTVKALFKALNAVETPQDIQEKFGRTVVEKYLL 546
BLAST of DCAR_008779 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SRA9 ((uncharacterized protein LOC110758591 {ECO:0000313|RefSeq:XP_021816181.1}))
HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 333/504 (66.07%), Postives = 406/504 (80.56%), Query Frame = 0
Match: A0A6P5SRA9 ((uncharacterized protein LOC110758591 {ECO:0000313|RefSeq:XP_021816181.1}))
HSP 1 Score: 630.558 bits (1625), Expect = 0.000e+0
Identity = 333/504 (66.07%), Postives = 406/504 (80.56%), Query Frame = 0
Query: 5 SYVLSCSRHVRSTQLCRPV-SNFSFHRPIVTFSYTQLQNMIPLVPDSLCGMRSFCNKAASIPLALQAQVERERQREREERIRMGLDTADIDAEDDEDYMGVGPLIDKLEKWKIKHPPNPELDMMYEEPTDSDSDEDDDRFSAEANKRRSEDFEKKFARHKELLKSFTDSKTLDESHEWMNRLDKFEQKHFKLRPEYIVIGELMNRLKEATGKDKFLLQHKLNRAMRLVDWKEANDPNNPDNYGAFQHAD-EAAV---ENEEFEKEQLTRRAQLNDDDDMEFDSMKERDDILLEKLEAIDKELEQKLGDLDHTFGKKGKVLEQEIRDLAEERNSLTEQKRRPLYRKGFDVKLIDVSRTCKVTKGGRIFKYTAMLACGNYNGVIGFAKAKGPAMPVAVQKAHEKCFQNLHYIERHEEHTIAHAVQTSYKKTKVYLWPGQTLTGMKAGRIVQTVLNLAGLKNVKSKVVGSRNPDNTVKALFKALNAIETPKDVQQKFGRTVVESYLL 503
S S SR + + + P + F R I T + + P S G + ++ L A+VERE+QRERE+R R GLDT DID ED+EDY+GV PLI+KL+K K+K +L++ YEEPTDSDSDEDD+RF+ +A K+R ++F+KKF RH+ELLK+FT++ TLD++ +WMN++DKFEQKHF+LRPEY VIGEL+NRLK A GKDKF+LQ KLNRAMRLV WKEA DPNNP NYG QH E++V E+ FEKE+ + ++DDDD EF+ MKE+DDILLEKL IDK+LE+KL +LDHTFGKKGKVLE+EIRDLAEERN LTE+KRRPLYRKGFDVK+I+V+RTCKVTKGG++ KY+A+LACGNY+GV+G+AKAKGPA+P+A+QKA+EKCFQNLHY+ERHEEHTIAHA+QT+YKKTKVYLWP T TGMKAGR VQT+LNLAG KNVKSKVVGSRNP NTVKALFK+LNAIETPKDVQ+KFGRTVVE YLL
Sbjct: 4 SQAFSWSRLILNQPIKNPTKAPLRFSRKISTSPHFPTSHA-PKPSFSFSGKTHYSTVSSRAAQDLLAEVEREKQREREQRKRAGLDTKDIDQEDEEDYLGVIPLIEKLDKEKLKGDTG-DLNL-YEEPTDSDSDEDDERFTPDAVKKRFDEFQKKFTRHEELLKNFTEAGTLDDAFKWMNKIDKFEQKHFRLRPEYRVIGELINRLKVAEGKDKFILQQKLNRAMRLVQWKEAYDPNNPANYGLIQHEQVESSVDLLEHAGFEKEKQIIQG-VDDDDDEEFNDMKEKDDILLEKLNTIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNDLTEKKRRPLYRKGFDVKIINVNRTCKVTKGGQVVKYSAILACGNYHGVVGYAKAKGPAVPIALQKAYEKCFQNLHYVERHEEHTIAHAIQTTYKKTKVYLWPASTRTGMKAGRTVQTILNLAGFKNVKSKVVGSRNPHNTVKALFKSLNAIETPKDVQEKFGRTVVEKYLL 503
| Match Name | Stats | Description |
|---|---|---|
| A0A4V3WJ65 | E-Value: 0.000e+0, PID: 68.50 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| A0A5J5AWL7 | E-Value: 0.000e+0, PID: 76.07 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| A0A6P3ZSE6 | E-Value: 0.000e+0, PID: 65.22 | (uncharacterized protein LOC107414724 {ECO:0000313... [more] |
| A0A6P5YZZ5 | E-Value: 0.000e+0, PID: 67.49 | (uncharacterized protein LOC111296212 isoform X2 {... [more] |
| A0A5B7C1C9 | E-Value: 0.000e+0, PID: 75.12 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| A0A2H5NTC1 | E-Value: 0.000e+0, PID: 69.04 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| V4VE22 | E-Value: 0.000e+0, PID: 69.04 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| A0A6J5UBZ7 | E-Value: 0.000e+0, PID: 66.67 | S5 DRBM domain-containing protein {ECO:0000259|PRO... [more] |
| A0A6P5Z0L9 | E-Value: 0.000e+0, PID: 66.53 | (uncharacterized protein LOC111296212 isoform X1 {... [more] |
| A0A6P5SRA9 | E-Value: 0.000e+0, PID: 66.07 | (uncharacterized protein LOC110758591 {ECO:0000313... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |