MFYSHQLLARKAPLGQIWMAATTHAKINKKKLHKLNIIQICEQILNPSVP
MALRLSGILMGRLNYDVTRLLVEINEAWKVKGVPDRTLLPKGKSQAKYEA
VTLPDNQGTEEVEEIERSRHFSESATMMGFQQPSYVSMHLDNVDVPYTSN
TVREDGQAQYYHQVDFDNITLFEGFDYYQADTDLHNRFERFDIEDDADTQ
TNFAPDDHTQIPATIISSPPRQEEPKKVNENPEKPLNDHVDQPFEEAKEV
TQFMDSTPIMKITDLMDIPPVVLVCRLFAKGNKQIYYPAALLELWRRCTQ
PPHDSPSVLFMFLDMKPHGDYHTGVSSQPSEISIEKQRNTLENNEMPTEI
LMEELRNNLKNFGIGAASANGVSATKASGVSATKASGVPAAKASMISPSN
SVCLFMSNYVGGEEFGSIPSSGSGHAFPTHSTEANTKWSNKKRSYSSTRN
LETVAEETTWQNLDPDFKLTSTPENGSTLDNELMVETGPTQTQKYPVADQ
PLDQITDAIRRHLKIHFDTPGCPTIESVNQLAFGMNRKRAACFFHQICGV
PLLKEGVVDPGSWNGAESLNKNVVISAVAGNVFHRRLLDIDVVDAPRRYS
LRRQIASLFPPKTIKALPSSAQPPSPSPSPSPSPVPSPVPSPSPSAAQIP
EVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSA
LLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAA
CEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRK
KIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESE
HLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSD
FGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASD
YLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTA
RLKEITRIRAEEAVPRLSPLWWAELEIISSEGL*
| Relationships |
|---|
| The polypeptide, DCAR_011837, derives from mRNA, DCAR_011837. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A1R3FW73 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 536.184 bits (1380), Expect = 3.076e-178
Identity = 264/415 (63.61%), Postives = 314/415 (75.66%), Query Frame = 0
Query: 629 SPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
SP+ P +P P+PS + +P +VP+ S S H I L A++GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+S K+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 123 SPNADPSHAPAPTPSNNNTVLPNASVPT------------------TSGSKSSGSSSKHRTILL-ASIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSDKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLTEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 518
Match: A0A1R3I025 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 535.028 bits (1377), Expect = 5.239e-176
Identity = 252/352 (71.59%), Postives = 294/352 (83.52%), Query Frame = 0
Query: 692 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA-----------SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
L AA+GG+ LL++ G Y +++KVS V+PWATGLSGQLQKAFVTGVP LKR+EL AACEDFSNV+ +S GTVYKGTLS GVEIAV S+AV+SAK+W +NLE+QFRKKI LS+VNHKNFVNL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+ESEHLDW MR+RIIMG+AYCLEH+HQL PPIPH +LNSSAV+LTEDYAAK+SD WNEI + D +A S ESNVYSFGVLLFE+VTGR+PY+VD +LEDWASDYLR DQPL EMVD L SFD EQLE++GEVIKSCCH P+QRP MK V ARL+EIT I + A+P+LSPLWWAELEI+S+E
Sbjct: 291 LFAAIGGAVFLLVVIVGTYLFKTSKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGSSTIGTVYKGTLSNGVEIAVASVAVKSAKDWSKNLETQFRKKIDTLSKVNHKNFVNLLGYCEEDEPFTRMMVFEYAPNGTLFEHLHIKESEHLDWAMRLRIIMGMAYCLEHIHQLNPPIPHNNLNSSAVNLTEDYAAKISDPCFWNEITASDREADRKNIPDSPLESLESNVYSFGVLLFEIVTGRMPYLVDDGSLEDWASDYLRRDQPLAEMVDPTLNSFDREQLEKLGEVIKSCCHPEPRQRPDMKEVGARLREITAITPDGAIPKLSPLWWAELEIMSAEA 642
Match: V4T720 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 531.561 bits (1368), Expect = 2.410e-175
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Query: 620 SAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 1033
S PP S +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 191 SVSPPKLS-NPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 592
Match: A0A4S4EU36 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.406 bits (1365), Expect = 3.698e-175
Identity = 252/375 (67.20%), Postives = 305/375 (81.33%), Query Frame = 0
Query: 658 PPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
PP + P SP ++ + SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR K+ LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W E+A+ +M+++ E N+YSFGVLLFE++TG+LPY VDS +LEDWA DYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP M+ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 213 PPVSAAMP----SPAENNSTPVKRSGSKHRVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKVDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVMRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWREVAAAEMESNRERNLYSFGVLLFEMITGKLPYSVDSGSLEDWALDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQMREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 581
Match: A0A5B7ATU8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 531.561 bits (1368), Expect = 1.190e-174
Identity = 249/359 (69.36%), Postives = 301/359 (83.84%), Query Frame = 0
Query: 679 SRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKL-----SDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
++ S S H+ + LSA +GGSALL++L GI+FC+ NKV+AV+PWATGLSGQLQKAFVTGVP LKR+ELE ACEDFSNV+ +S+ GTVYKGTLS GVEIAV S+AV SAK+W NLE+QFR KI LS++NHKNFVNL+GYCEE++PFTRM+VFEYAPNGTLFEHLH++E+EHLDWGMRMRI MG+AYCLEH+HQL PPI K+L SSAV+LTEDYAAK+ SDFG WNE+A+ +M+ PESNVYSFGV LFE++TGRLPY VD ++ED ASDYLRG++PL EMVD L S EQLE+IGEVIKSC H +PKQRPAM+ VTA L++IT I + A+P+ SPLWWAELEI+S+E
Sbjct: 289 AKKSDSNHYRVLILSAVIGGSALLIILVIGIFFCQGNKVAAVKPWATGLSGQLQKAFVTGVPKLKRSELETACEDFSNVIGSSSIGTVYKGTLSNGVEIAVVSVAVISAKDWSNNLEAQFRNKIDTLSKLNHKNFVNLLGYCEEEQPFTRMMVFEYAPNGTLFEHLHVKEAEHLDWGMRMRITMGMAYCLEHMHQLTPPITLKNLKSSAVNLTEDYAAKISDIGFSDFGFWNELAAAEMKFYPESNVYSFGVTLFEMITGRLPYSVDKGSIEDCASDYLRGERPLREMVDPTLKSLQVEQLEKIGEVIKSCVHPDPKQRPAMREVTAILRDITAIGPDGAIPKHSPLWWAELEILSTEA 647
Match: A0A5B7AVK7 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 530.406 bits (1365), Expect = 1.257e-174
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 692 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 1030
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 273 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 613
Match: A0A5B7AUI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.02 bits (1364), Expect = 1.963e-174
Identity = 247/341 (72.43%), Postives = 293/341 (85.92%), Query Frame = 0
Query: 692 LSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQA--SPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISS 1030
LS A+GGS LL +L I+FCR K +AV PW TGLS QLQKAFVTGVP LKR+ELE ACEDFSNV+++S+ GTVYKGTLS+GVEIAVTS+AV AK+W ENLE+QFR KI LS+VNHKNF NL+GYCEE++PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW MRMRI MG+AYCLEH+HQL PPI HK+L SSAV+LTEDYAAK+SDFG W E+A+ +M++ PESNVYSFGV+LFE++TGRLPY VDS +L+DWASDYLRGDQPL EMVD L SF EQL++IGEVIKSC H +PKQRPAM+ VTARL+EIT I + A+P+LSPLWWAELE++S+
Sbjct: 281 LSGAIGGSVLLFILVIFIFFCRVKKAAAVNPWTTGLSEQLQKAFVTGVPKLKRSELETACEDFSNVINSSSIGTVYKGTLSSGVEIAVTSVAVIYAKDWSENLEAQFRNKIDTLSKVNHKNFDNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWEMRMRIAMGMAYCLEHMHQLTPPIAHKNLTSSAVNLTEDYAAKISDFGFWIEVAAAEMESHPDPESNVYSFGVVLFEMITGRLPYSVDSSSLDDWASDYLRGDQPLEEMVDSTLRSFQVEQLKKIGEVIKSCVHPDPKQRPAMREVTARLREITAIAPDGAIPKLSPLWWAELEVLST 621
Match: V4SML4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.406 bits (1365), Expect = 6.707e-174
Identity = 268/425 (63.06%), Postives = 326/425 (76.71%), Query Frame = 0
Query: 620 SAQPPSPSPSPSPSPVPSPVPSPSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDM-----------QASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEGL 1033
S PP S +P+P+P P+ P+P+PS +++P RPSS S Q S GS SKH I + + G A+L++ GIY CRSNKVS V+PWATGLSGQLQKAFVTGVP LKR+ELEAACEDFSNV+ +S GTVYKGTLS GVEIAV S++V SAK+WP+NLE QFRKKI LS+VNHKNFVNLIG+CEE++PFTRM+VFEYAPNGTLFEH+HI+ESEHLDWGMR+RI MG+AYCLEH+HQL PPI H LNSSAV LTEDYAAKLSD WNEIA +M AS ESNVY+FGVLLFE+VTGRLPY+VD+ +LEDWA+DYL G QPL + VD L+SFDEEQLE++GE+IKSC +P++RP M+++ A L+EIT I + A+P+LSPLWWAE+EI+S+E +
Sbjct: 263 SVSPPKLS-NPAPAPAPNQTPTPTPS------LSIP-----RPSS--------SQSLQKSGGSSSKH---IAILGGVIGGAILVVAIVGIYLCRSNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIAVASVSVASAKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEMAATSKKLSSAPSASLESNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTEAI 664
Match: A0A7J7I3V6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 530.791 bits (1366), Expect = 9.129e-174
Identity = 256/391 (65.47%), Postives = 312/391 (79.80%), Query Frame = 0
Query: 642 PSPSAAQIPEVTVPSGPPSRPSSPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
P+P+ P PP + P SP ++ + SGSKH + I LS A+GG+AL L+ G++FC+ NKVS VRPWATG+SGQLQKAFVTGVP LKR+ELE ACEDFSNV+S+S+ GTVYKGTLS GVEIAVTS+AV SAK+W LE QFR KI LS+VNHKNFVNL+GYC ED+PFTRM+VFEYAPNGTLFEHLHI+E+EHLDW RMRI MG+AYCL+H+HQL PPI HK+LNSSAV LTEDYAAK+SDFG W+E+A+ +M+++ ESN+YSFGVLLFE++TG+LPY VDS +LEDWASDYLRG++ EMVD L SF EQLE+IG+VI+SC H NPKQRP ++ VTARL+EIT I + A P+ SPLWWAELEI+S++
Sbjct: 313 PAPAVYAFP-------PPVSAAMP----SPAENNSSPVKRSGSKHQVLI-LSLAIGGTALSALVI-GLFFCQGNKVSVVRPWATGISGQLQKAFVTGVPKLKRSELETACEDFSNVISSSSIGTVYKGTLSNGVEIAVTSVAVASAKDWSNILEVQFRNKIDTLSKVNHKNFVNLLGYCVEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRMRITMGMAYCLDHMHQLTPPIAHKNLNSSAVHLTEDYAAKVSDFGFWSEVAAAEMESNRESNLYSFGVLLFEMITGKLPYSVDSGSLEDWASDYLRGEKSFREMVDPTLKSFQVEQLEKIGDVIRSCVHPNPKQRPQIREVTARLREITEIGPDGAKPKASPLWWAELEILSADA 690
Match: A0A6A4L9G1 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011} (Fragment))
HSP 1 Score: 521.546 bits (1342), Expect = 7.760e-173
Identity = 253/369 (68.56%), Postives = 301/369 (81.57%), Query Frame = 0
Query: 664 SPFPENSPGSDDEQSSRGSGSKHHLAITLSAALGGSALLLLLASGIYFCRSNKVSAVRPWATGLSGQLQKAFVTGVPSLKRTELEAACEDFSNVLSTSATGTVYKGTLSTGVEIAVTSLAVESAKEWPENLESQFRKKIYQLSRVNHKNFVNLIGYCEEDKPFTRMVVFEYAPNGTLFEHLHIRESEHLDWGMRMRIIMGIAYCLEHLHQLKPPIPHKSLNSSAVSLTEDYAAKLSDFGLWNEIASKDMQASPESNVYSFGVLLFELVTGRLPYMVDSFALEDWASDYLRGDQPLGEMVDQILTSFDEEQLEQIGEVIKSCCHYNPKQRPAMKNVTARLKEITRIRAEEAVPRLSPLWWAELEIISSEG 1032
SP P +S + S S S H A+ + AA+ G LL L GI+FCR NK+ AVRPWATGLSGQLQKAFVTGVP LKR ELEAACEDFSNV+ +S GTVYKGTLS+GVEIAVTS+AV SAKEW NLE+QFR KI LS+VNHKNF+NL+GYCEED+PFTRM+VFEYAPNGTLFEHLHI+E+EHL+WGMRMRI MGIAYCL+H+HQLK PI K+L+SS+V+LTEDYA+K+SDF L +++A+ +M + PESNVYSFGV+LFE+VTGRL S ++EDWASDYLRGD+ L +MVD L SF EEQ+EQI EVIKSC + NPK+R MK+VTARL+EIT I + AVP+LSPLWWAELEI+S EG
Sbjct: 141 SPTP-SSTAENPSISDESSNSNSHRALIICAAIVGPMLLFSLVIGIFFCRGNKIVAVRPWATGLSGQLQKAFVTGVPKLKRAELEAACEDFSNVIGSSPIGTVYKGTLSSGVEIAVTSIAVTSAKEWSTNLEAQFRDKINSLSKVNHKNFMNLLGYCEEDEPFTRMLVFEYAPNGTLFEHLHIKEAEHLEWGMRMRIXMGIAYCLDHMHQLKRPITLKNLHSSSVNLTEDYASKVSDFVLLDKVAAAEMDSHPESNVYSFGVVLFEIVTGRL----HSGSIEDWASDYLRGDRSLRDMVDPTLKSFQEEQIEQIDEVIKSCVNPNPKRRQQMKDVTARLREITSIGPDGAVPKLSPLWWAELEIMSVEG 504
| Match Name | Stats | Description |
|---|---|---|
| A0A1R3FW73 | E-Value: 3.076e-178, PID: 63.61 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A1R3I025 | E-Value: 5.239e-176, PID: 71.59 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4T720 | E-Value: 2.410e-175, PID: 63.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A4S4EU36 | E-Value: 3.698e-175, PID: 67.20 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7ATU8 | E-Value: 1.190e-174, PID: 69.36 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AVK7 | E-Value: 1.257e-174, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A5B7AUI3 | E-Value: 1.963e-174, PID: 72.43 | Protein kinase domain-containing protein {ECO:0000... [more] |
| V4SML4 | E-Value: 6.707e-174, PID: 63.06 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A7J7I3V6 | E-Value: 9.129e-174, PID: 65.47 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6A4L9G1 | E-Value: 7.760e-173, PID: 68.56 | Protein kinase domain-containing protein {ECO:0000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |