DCAR_011676

Resource Type: 
Polypeptide
Name: 
DCAR_011676
Identifier: 
DCAR_011676.mRNA-protein
Sequence: 
MDIIGGKKGMERQLRKLMKDSRELSNIVLVHYREVKGNRTHYNRTRGTEG
VIPNSLEEEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYA
DAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSALSNDYQGSIQA
TSHIQPIHPSRESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGW
QSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQHG
EQNGQFAAAEVGSFMKTEVENSATVDAKANHLALKQPLDGLKNLDSFGRW
MSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSL
SQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAE
VPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRD
VDAADLSSDSSSEALLHMRFTNLLSIRCAYHNSVPGIMDDNLNFSSNLNS
LIKDENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGG
KGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWA
AYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGY
IAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQ
GLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHA
LSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQA
HVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQ
GTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV
SEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFMFAEA*
Sequence Length: 
949
Sequence Checksum: 
8a1ed09879040efd2f810ca711cbcf33
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_011676, derives from mRNA, DCAR_011676.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6Z4F1 ((Putative calmodulin-binding transcription activator 3 {ECO:0000313|EMBL:MPA38871.1}) (2.3.1.51 {ECO:0000313|EMBL:MPA38871.1}) (3.1.1.13 {ECO:0000313|EMBL:MPA38871.1}) (3.1.1.3 {ECO:0000313|EMBL:MPA38871.1}) (3.1.1.4 {ECO:0000313|EMBL:MPA38871.1}))

HSP 1 Score: 1109.75 bits (2869), Expect = 0.000e+0
Identity = 596/983 (60.63%), Postives = 713/983 (72.53%), Query Frame = 0
 
Query:   23 ELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYS-ALSNDYQGSIQA-------------------------------------------TSHIQ--PIHPSRE----SALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQHG---EQNGQFAAAEVGSFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSI-RCAYHNSVPGIMDDNLNFSSNLNSLIKDENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            ELS+IVLVHYREVKGNRT++NR + TE  IPNS E EE + ++EVDSS+SSK+  Y Y V SQTTDT SLNS Q SEY DAESAY++++ SG  SF +LQ  + EK+DD LSVPYY    SNDYQG + A                                           T  IQ  P  P+       +++ + G GNE   Q   D  GK +EFG+H       Q+ E  S H+ KWSM+Q L     Y+     +E + +S D+ N  E+ H    EQN      ++      ++E + TV+ KA++ AL+QPL      +GLK LDSF RWMSKELGDVN    QSSSG YWE+VGSE  V DS+++ Q+  +TY + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITGRFL+S Q V  CKW+CMFGE EVPAEV+ADGVL CHTP H +GRVPFYVTC+NRLACSE+REFE++  N+RD+D AD+++ S+SE LL MRF  LLS+   +   SV   + +N + SS ++SL++D +EW  +  LTS DEFS E L +Q  ++LLKEKLH WL +K AEGGKGPSV+DE GQGVLHFAAALGYDWAI PT+AAGV++NFRDVNGW ALHWAA +GRE TV  LIS  AAPGALTDP+PKYP GR PA+LAS+NGHKGIAGY+AE ALSSHLSSL LKD    DAG +  +  VQ ++ERT TPI+DGD   GLSLKDSLAAVC+ATQAAARIHQV+R+QSFQKKQLKEY+D +FGMSDE ALSL+AVK SR GQHDEPVHAAATRIQNKFRS+KGR++FL  RQ++VKIQAHVRGHQVRKNYKK IWSVGIL+KVILRW+RKG GL  FK E   E  S Q TSSKEDDYDFLKEGRKQ+EERLQKAL RVKSMVQYPEARDQYRRLLNVV+EM+ETK   D  +N+S+E   TAD FDDDL+DLEALL DDTFM
Sbjct:  123 ELSHIVLVHYREVKGNRTNFNRIKETEDTIPNSQETEENVFNSEVDSSVSSKYLPYNYQVASQTTDT-SLNSAQASEYEDAESAYNHQASSGFHSFLELQPPEVEKIDDGLSVPYYPLPYSNDYQGKLPAIPGMDFVSLAQGDKDKNSMTAGLTYESRRHLDFQSWEDVLENCTDGIQSVPFLPTLSFNLSDSMSNIPGQGNEILGQVFPDGSGKKQEFGSHPPSLEELQTSEVGSSHITKWSMDQKLHPDSAYDLTTGFHEED-NSVDILNSREACHTRPTEQNKHPMQNDL------QIERNLTVEGKADYSALRQPLLGGFLKEGLKKLDSFDRWMSKELGDVNGPHKQSSSGVYWESVGSEDGVGDSSMAPQVHLDTYMLGPSLSQDQLFSIIDFSPNWAYAGSEMKVLITGRFLESQQYVDKCKWSCMFGELEVPAEVIADGVLRCHTPLHQAGRVPFYVTCSNRLACSEVREFEYRADNIRDMDVADINNGSTSEILLRMRFGKLLSLGSLSPPVSVSSSVGENSHLSSKISSLMEDNDEWDHMLKLTSEDEFSPEKLKDQLLQRLLKEKLHVWLLQKTAEGGKGPSVLDEDGQGVLHFAAALGYDWAIPPTIAAGVSVNFRDVNGWNALHWAASYGRERTVGLLISLDAAPGALTDPTPKYPSGRTPADLASSNGHKGIAGYLAESALSSHLSSLQLKDTKEGDAGEISRIKAVQTISERTATPINDGDLAHGLSLKDSLAAVCNATQAAARIHQVFRVQSFQKKQLKEYEDDKFGMSDERALSLVAVKKSRMGQHDEPVHAAATRIQNKFRSWKGRREFLTIRQQIVKIQAHVRGHQVRKNYKKFIWSVGILEKVILRWRRKGSGLRGFKPEAVAEC-SMQDTSSKEDDYDFLKEGRKQSEERLQKALERVKSMVQYPEARDQYRRLLNVVTEMQETKTVYDTVLNSSEE---TAD-FDDDLIDLEALLDDDTFM 1092    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HWM2 (CG-1 domain-containing protein {ECO:0000259|PROSITE:PS51437})

HSP 1 Score: 1093.18 bits (2826), Expect = 0.000e+0
Identity = 590/1007 (58.59%), Postives = 703/1007 (69.81%), Query Frame = 0
 
Query:   13 QLRKLMKDSRELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSA-LSNDYQGS------------------------------------------------IQATSHIQPIHPSRESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQHGEQNGQ------------FAAAEVGSFMKTEVENSATVDAKANHL-ALKQPL-------DGLKNLDSFGRWMSKELGDVNEAQIQS---SSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYHNSVPGIMDDNLNFSSNLNSLIKDEN-EWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETK-ATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            Q R       ELS+IVLVHYREVKGNRT +NR + TEG + NS E EE++P++E D S+SS F    Y + SQTTDTTSLNS Q SEY DAESAY++++ S L SF +       +  DAL+ PYY A  SNDYQG                                                 +Q+     P   +R   + I+    NE   Q   D+F + +EFG+  +GQ  WQ+ EG S HL KW  +Q L     Y  +        +  DL N  E  H   +GQ                + G + K++ E +   + KAN+  ALKQPL       +GLK +DSF RWMSKELGDVNE+ +QS   SS AYW+ V SE  V +S+IS Q   +TY + PSLSQDQLFSIIDFSPN AY+G+EVKV+I G+FLK  QD   CKW+CMFGE EVPAEV++DGVL CHTP H + RVPFYVTC+NRLACSE+REFE++V ++RDVD AD+SS S+SE LLHMRF  LLS+     NS      D    +S +NSL++++N EW+Q+ MLTS +EFS E    Q  +KLLKEKLH WL +K AEGGKGP+V+DE GQGVLHFAAALGYDWAI PT AAGV++NFRDVNGWTALHWAA+ GRE TVPFLISQGAAPGALTDP+PKYP GR PA+LAS+NGHKGIAGY+AE ALS+HL SL+LK+    DA  +  +  VQ ++ER+PTPIS GD    L LKDSLAAVC+ATQAAARIHQV+R+QSFQKKQ KEYDD +FGMSDEHALSL+AVK SR GQHDEPVHAAATRIQNKFRS+KGRKDFLI RQR+VKIQAHVRGHQVRKNY+KIIWSVGIL+KVILRW+RKG GL  FK ET  EG S +  SSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV+E++ETK    D A+N+S+EA   AD+  DDL+DL+ALL DDTFM
Sbjct:  359 QRRSYWMLEEELSHIVLVHYREVKGNRTSFNRIKETEGALINSQETEEVVPNSETDCSVSSSFPMNSYQMASQTTDTTSLNSAQASEYEDAESAYNHQASSRLHSFLE----PVMEKGDALTAPYYPAPFSNDYQGKLDIPGADFTSLAQESSSKDSNSVGISYELPKNLDFPSWEDVLENCNAGVQSMPSQTPFSSTRADTMGIIPKQENEILMQLLTDSFSRKQEFGSDPQGQDEWQTSEGYSAHLSKWPGDQKLHSDSAYGLSTRFDIQEANCVDLLNSLEPGHAYPDGQKGHPLQNDFQIQLLNVDHGCYQKSDSERNMITEGKANYSSALKQPLLDSSLTEEGLKKVDSFNRWMSKELGDVNESHMQSRLSSSAAYWDTVESENGVDESSISPQGHLDTYMLGPSLSQDQLFSIIDFSPNWAYAGSEVKVLIMGKFLKGQQDAEKCKWSCMFGEVEVPAEVISDGVLRCHTPIHKAERVPFYVTCSNRLACSEVREFEYRVNHIRDVDTADVSSGSTSEILLHMRFVKLLSL-APSSNSGLSNEGDRFPLNSKINSLMEEDNDEWEQMLMLTS-EEFSPEKAKEQLLQKLLKEKLHVWLLQKAAEGGKGPNVLDEDGQGVLHFAAALGYDWAIPPTTAAGVSVNFRDVNGWTALHWAAFCGRERTVPFLISQGAAPGALTDPTPKYPAGRTPADLASSNGHKGIAGYLAESALSAHLQSLHLKETKEADAAEISGIKAVQTISERSPTPISTGD----LPLKDSLAAVCNATQAAARIHQVFRVQSFQKKQQKEYDDGKFGMSDEHALSLIAVK-SRLGQHDEPVHAAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILEKVILRWRRKGSGLRGFKPETHTEGTSMRDISSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEIQETKQVVYDRALNSSEEA---ADF--DDLIDLQALLDDDTFM 1349    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AIJ3 (CG-1 domain-containing protein {ECO:0000259|PROSITE:PS51437})

HSP 1 Score: 1076.23 bits (2782), Expect = 0.000e+0
Identity = 588/997 (58.98%), Postives = 703/997 (70.51%), Query Frame = 0
 
Query:   23 ELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYS-ALSNDYQGS-------------------------------------------------IQATSHIQPIHPSRESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYT---ESQHGEQNG---------QFAAAEVGSFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSI-RCAYHNSVPGIMDDNLNFSSNLNSLIK-DENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFMFAEA 948
            ELS+IVLVHYREVKGNRT++NR +  E  IPNS E EE L ++EVDSS+SSK+  Y Y V SQTTDTTSLNS Q SEY DAESAY++++ S   SF +LQ  + E++DD LSVPY     SNDY+G                                                  IQ+   +  +  +   ++N +   GNE       D  GK +EFG+H  G    Q+ EG S H+ KWSM+Q L     Y      +E N +  DL N      +Q  E+N          Q    E  S  ++  E++  V+ KA++ AL+QP       +GL  LDSF RWMSKELGDVN + +QSSSG YWE V SE  V DS+I+ Q   +TY + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITGRFL+  QDV  CKW+CMFGE EVPAEV+ADGVL CHTP H  GRVPFYVTC+NRLACSE+REFEF+  N+RD+D AD+++DS+SE LL MRF  LLS+   +   SV   + +N +  S ++SL++ D NEW  +  LTS DEFS E + +Q  +KLLKEKLH WL +K AEGGKGPSV+DE GQGVLHFAAALGYDWAI PT+AAGV++NFRDVNGW ALHWAA +GRE TV  LIS GAAPGALTDP+PKYP GR PA+LAS+ GHKGIAGY+AE ALSSHLSSL LKDA   D G +  +  VQ V+ERT TPISDGD   GLSLKDSLAAVC+ATQAAARIHQV+R+QSFQKKQLKEY+D++FGMSDE ALSL++VK+SR GQHDEPVHAAA RIQNKFRS+KGR+DFL  RQ++VKIQA VRGHQVRKNYKK IWSVGIL+KVILRW+RKG GL  FK E   E  S Q T S EDDYDFLKEGRKQ+EERLQKALARVKSMVQYPEARDQYRRLLNVV+E++ETK   D  +N+S+E   T D FD+DL+DLEALL DDTFM  E+
Sbjct:  123 ELSHIVLVHYREVKGNRTNFNRIKEIEETIPNSQETEENLLNSEVDSSVSSKYHPYNYRVASQTTDTTSLNSAQASEYEDAESAYNHQASSRFHSFLELQPPEVEQIDDGLSVPYCPLPYSNDYEGKLPAIPGMDFVSLTQGDKDENSTTVGLTYGSRRHLDIPSWEDVLENCTAGIQSAPFLSTLSSNLSDSMNNIPRQGNEILGLVFPDVSGKKQEFGSHPPGLEELQTSEGGSSHITKWSMDQKLHPDSAYELTTGFHEVNCE--DLLNPPMPFHTQPTEKNKNPMQNDPQIQLNNVEGRSSQRSVSESNLAVEGKADYSALRQPRIDGLLKEGLMKLDSFDRWMSKELGDVNGSHMQSSSGVYWETVESEDGVGDSSIAPQGHLDTYVLGPSLSQDQLFSIIDFSPNWAYAGSEIKVLITGRFLEIQQDVEKCKWSCMFGEVEVPAEVIADGVLRCHTPLHQDGRVPFYVTCSNRLACSEVREFEFRASNIRDMDVADINNDSTSEILLRMRFGKLLSLGSLSPPASVSSGVSENSHLISKISSLMEEDSNEWDHMLKLTSEDEFSQEKIKDQLLQKLLKEKLHVWLLQKTAEGGKGPSVLDEDGQGVLHFAAALGYDWAIPPTIAAGVSVNFRDVNGWNALHWAASYGRERTVGLLISLGAAPGALTDPTPKYPSGRTPADLASSKGHKGIAGYLAESALSSHLSSLKLKDAKEGDTGEISGVKAVQTVSERTATPISDGDLPHGLSLKDSLAAVCNATQAAARIHQVFRVQSFQKKQLKEYEDNKFGMSDERALSLVSVKTSRLGQHDEPVHAAAVRIQNKFRSWKGRRDFLTIRQQIVKIQALVRGHQVRKNYKKFIWSVGILEKVILRWRRKGSGLRGFKPEALTES-SMQKTISNEDDYDFLKEGRKQSEERLQKALARVKSMVQYPEARDQYRRLLNVVTEIQETKTVYDTVLNSSEE---TVD-FDEDLIDLEALLDDDTFMTTES 1112    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EDT1 ((Uncharacterized protein {ECO:0000313|EMBL:THG14501.1}))

HSP 1 Score: 1056.97 bits (2732), Expect = 0.000e+0
Identity = 560/965 (58.03%), Postives = 682/965 (70.67%), Query Frame = 0
 
Query:   37 GNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSA-LSNDYQGSIQATSHIQPI------------------HPSRE-------------------SALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQHG---EQNGQFAAAEVG----SFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYHNSVPG-IMDDNLNFSSNLNSLIK-DENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFMFAE 947
            GNR +++R +  E  I NS E EEI+P++EVDSS+SS F  Y Y V S  TDT SLNS Q SEY DAES Y++++ SG  SF +LQ    EKM+D LSVPYY    SNDY+G + A   +  +                   P ++                     ++   G GNE   Q   + FGK E+ G +   Q  WQ+ EG+S H+ KWSM+Q       Y     LY G +++ DL N     H    EQN     +++     S +K   EN+  ++ KA    LKQPL      +GLK LDSF RWMSKELGDVNE+  QS+SG YWE V +E  V DS+I+ Q   ETY + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITG+FL + QDV  CKW+CMFGE EVPAE +ADGVL CHTP H  GRVPFYVTC+NRLACSE+REFE+++ NL+DVD  D+ S S++E LL MRF  +LS+      S     + +N + S+ ++SL++ D NEW+Q+ MLTS DEFS E +  Q  +KLLKEKLH WL +KVAEGGKGPSV+DEGGQGVLHFAAALGYDWAI PT+AAGV++NFRDVNGWTALHWAAY GRE TV  L+S  AAPGALTDPSP YP G+ PA+LAS+ GHKGIAGY+AE ALSSHL SL LKD  + D G +P + DVQ V+++  TPI DGDF  GLSLKDSLAAV +ATQAAARIHQVYR+QSFQ+KQLKEY + +FGMSDE ALSL+ VK SR G+H+EPVHAAA RIQNKFRS+KGR++FL  RQ++VKIQAHVRGHQVRKNY+ IIWSVGIL+KVILRW+RKG GL  F+ E   +G S Q T S EDDYDFLKEGRKQTEER +KALARVKSMVQYPEARDQYRRLLNVV+EM+ETKA  D  +N++++   TAD FDDDL+D +ALL DD+FM  E
Sbjct:   11 GNRANFSRIKEAEETIHNSQESEEIVPNSEVDSSVSSTFNPYNYQVTSHATDTASLNSAQASEYEDAESGYNHQASSGFHSFLELQPRVVEKMEDGLSVPYYPVPFSNDYEGKLSAIPGMDFVPLVQGDKGKNSVNADLTFEPQKQLDFSSWKDVVGNSGTGIQSDTMSFNPGQGNELLEQILTNDFGKSEDAGIYPPRQDKWQTSEGDSSHISKWSMDQKFYPESEYYPTTELYRG-VNAVDLLNSAGPFHAHSAEQNEHHTQSDLQIQSRSALKPASENNPIIEGKAESYPLKQPLLDSFLREGLKKLDSFDRWMSKELGDVNESHTQSNSGTYWETVETEDGVDDSSIAPQAHLETYMLGPSLSQDQLFSIIDFSPNWAYAGSEIKVLITGKFLMNQQDVDKCKWSCMFGEVEVPAEAIADGVLRCHTPLHKDGRVPFYVTCSNRLACSEVREFEYRIENLQDVDIPDIYSGSTNEILLRMRFGKMLSLESGSPPSSVSSTLGENSHLSNKISSLLREDNNEWEQMLMLTSEDEFSPEEVKEQLLQKLLKEKLHLWLLQKVAEGGKGPSVLDEGGQGVLHFAAALGYDWAIPPTLAAGVSVNFRDVNGWTALHWAAYCGRERTVVVLLSLDAAPGALTDPSPIYPGGQTPADLASSKGHKGIAGYLAESALSSHLQSLQLKDTKDGDEGKIPGVKDVQTVSKQAATPIDDGDFPHGLSLKDSLAAVYNATQAAARIHQVYRVQSFQRKQLKEYGNDKFGMSDERALSLVVVK-SRLGRHNEPVHAAAIRIQNKFRSWKGRREFLTIRQQIVKIQAHVRGHQVRKNYRSIIWSVGILEKVILRWRRKGSGLRGFRQEALTQGSSKQDTPSNEDDYDFLKEGRKQTEERFEKALARVKSMVQYPEARDQYRRLLNVVTEMQETKAVYDKVLNSTED---TAD-FDDDLIDFQALLDDDSFMSTE 969    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0F0G8 ((Signal responsive 1 {ECO:0000313|EMBL:GFY91377.1}))

HSP 1 Score: 1055.05 bits (2727), Expect = 0.000e+0
Identity = 573/993 (57.70%), Postives = 702/993 (70.69%), Query Frame = 0
 
Query:   23 ELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSA-LSNDYQGS-------------------------------------------------IQATSHIQPIHPSRESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQH---GEQNGQFAAAEV--------GSFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYHNS-VPGIMDDNLNFSSNLNSLIK-DENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKS-SRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            E S+IVLVHYREVKG+R ++NR +  E  IPNS E EEI+ ++EV SS+SSKF+ Y Y V SQTTDT SLNSTQ SEY DAESAY+++  SG  SF +LQ    EKM+D +SVPYY    SNDY G                                                  IQ+      +  +R   ++  +G GNE   Q   + F   +E G++   Q  WQ+ E +S H  KWS++  L +  + +    L+ G   + DL N    +H    +QN  +   +         G  MK+E+E++ TV+ KA    LKQPL      +GLK LDSF RWMSKELGDVN++ +QSSSG YWE V +E  V DS+I+SQ     Y + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITG+FLKS QD+  CKW+CMFGE EVPAE++ADGVL CHTP H++GRVPFYVTC+NRLACSE+REFE++V N++D D  D    S++E LL M+F N LS+  A   S V   + DN + SS +++L+K D NEW+Q+ MLTS D+FS E +  Q  +KLLKEKLH WL +KVAEGGKGPSV+DE GQGVLHFAAALGYDWAI PT+AAGV+INFRDVNGWTALHWAA  GRE TV FLIS  AAPGAL+DP+P +P G+ PA++A++NGHKGIAGY+AE +LSSHLSSL LKD     +G    +  VQAV+ERT TPI DGD   GLSLKDSLAAVC+ATQAAARIHQV+R+QSFQ+KQ+KEY D +FGMS+E ALSL+AVKS SR G HDEPV AAA RIQNKFRS+KGRK+FL  RQ++VKIQAHVRGHQVRKNY+KI WSVGI++K+ILRW+RKG GL  FK E  L   S++ TSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV+EM+ETKA  D  +N+++E    +D+  DDL+DLEALL DDTFM
Sbjct:  963 EHSHIVLVHYREVKGHRANFNRIKEAEEAIPNSQESEEIVSNSEVYSSVSSKFKSYNYQVTSQTTDT-SLNSTQASEYEDAESAYNHQESSGFHSFLELQPRAMEKMEDGVSVPYYPVPFSNDYLGKLPGVSGMDFGSLTEAEKGKNSVNAALTYPPEKHLDFPSWEDVLENSGTGIQSVPFQSSLSANRPDTMSFNSGRGNEPRGQFFTEGFSTKQEVGSYPHHQDKWQTSEDDSSHTSKWSLDPKLHKDSSSHLIPGLH-GEGHNVDLLNSVGPRHEHPSDQNKHYTQTDFQMHLTYGEGGAMKSELESNLTVEGKAEPSPLKQPLLDGLLKEGLKKLDSFDRWMSKELGDVNQSHVQSSSGTYWETVEAEDGVDDSSIASQAHLGAYMLGPSLSQDQLFSIIDFSPNWAYTGSEIKVLITGKFLKSQQDLEKCKWSCMFGEVEVPAEIIADGVLRCHTPLHNAGRVPFYVTCSNRLACSEVREFEYRVNNIQDADILDTYYGSTNEILLRMQFGNFLSLESASPPSCVSSPVGDNSHLSSKISALLKEDNNEWEQMLMLTSEDDFSPEKIKEQLLQKLLKEKLHVWLLQKVAEGGKGPSVLDEDGQGVLHFAAALGYDWAIPPTLAAGVSINFRDVNGWTALHWAASCGRERTVGFLISLDAAPGALSDPTPIHPSGQTPADVAASNGHKGIAGYLAESSLSSHLSSLQLKDNKEGSSGETSGVKVVQAVSERTATPIMDGDLAHGLSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQIKEYGDDKFGMSEERALSLVAVKSKSRLGHHDEPVQAAAIRIQNKFRSWKGRKEFLTIRQQIVKIQAHVRGHQVRKNYRKITWSVGIVEKIILRWRRKGSGLRGFKQEA-LPQASSKDTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEMQETKAVYDKVLNSTEE---VSDF--DDLIDLEALLDDDTFM 1947    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RDE6 ((Calmodulin-binding transcription activator 3 like {ECO:0000313|EMBL:PSS26577.1}))

HSP 1 Score: 1048.5 bits (2710), Expect = 0.000e+0
Identity = 574/993 (57.80%), Postives = 700/993 (70.49%), Query Frame = 0
 
Query:   23 ELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSA-LSNDYQGSIQATSHIQ---------------------------------------------PIHPS----RESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQH---GEQNGQFAAAEV--------GSFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYHNS-VPGIMDDNLNFSSNLNSLIK-DENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKS-SRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            E S+IVLVHYREVKG+R ++NR +  E  IPNS E EEI+ ++EV SS+SSKF+ Y Y V SQTTDT SLNSTQ SEY DAESAY+++  SG  SF +LQ    EKM+D +SVPYY    SNDY G +   S +                                              P  PS    R   ++  +G GNE   Q   + F   +E G++   Q  WQ+ E +S H+ KWS++  L +  + +    L  G   + DL N    +H    +QN  +   +         G  MK+E+E++ TV+ KA    LKQPL      +GLK LDSF RWMSKELGDVNE+ +QSSSG YWE V +E  V DS+I+SQ     Y + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITG+FL S QD+  CKW+CMFGE EVPAE++ADGVL CHTP H++GRVPFYVTC+NRLACSE+REFE++V N++D D  D    S++E LL MRF N LS+  A   S V     +N + SS +++L+K D NEW+Q+ MLTS D+FS + +  Q  +KLLKEKLH WL +KVAEGGKGPSV+DE GQGVLHFAAALGYDWAI PT+AAGV+INFRDVNGWTALHWAA  GRE TV FLIS  AAPGAL+DP+P +P G+ PA++A++NGHKGIAGY+AE +LSSHLSSL LKD     +G    +  VQAV+ERT TPI DGD   GLSLKDSLAAVC+ATQAAARIHQV+R+QSFQ+KQ+KEY D +FGMS+E ALSL+AVKS SR G HDEPV AAA RIQNKFRS+KGRK+FL  RQ++VKIQAHVRGHQVRKNY+KI WSVGI++K+ILRW+RKG GL  FK E  L   S++  SSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV+EM+ETKA  D  +N+++E    AD+  DDL+DLEALL DDTFM
Sbjct:  123 EHSHIVLVHYREVKGHRANFNRIKEAEEAIPNSQESEEIVSNSEVYSSVSSKFKSYNYQVTSQTTDT-SLNSTQASEYEDAESAYNHQESSGFHSFLELQPRAMEKMEDGVSVPYYPVPFSNDYLGKLPGVSGMDFGSLTEAEKGKNSVNAALTYPPEKHLDFPSWEDVLENSGTGIQSVPFQPSLSANRPDTMSFNSGRGNEPRGQFFTEGFSTKQEVGSYPHHQDKWQTSEDDSSHISKWSLDPKLHKDSSSHLIPGL-RGEGHNVDLLNSAGPRHEHPSDQNKHYTQTDFQMHLTYGEGGAMKSELESNLTVEGKAEPSPLKQPLLDGLLKEGLKKLDSFDRWMSKELGDVNESHVQSSSGTYWETVEAEDGVDDSSIASQAHLGAYMLGPSLSQDQLFSIIDFSPNWAYAGSEIKVLITGKFLTSQQDLEKCKWSCMFGEVEVPAEIIADGVLRCHTPLHNAGRVPFYVTCSNRLACSEVREFEYRVNNIQDADILDTYYGSTNEILLGMRFGNFLSLESASPPSCVSSPAGENSHLSSKISALLKEDNNEWEQMLMLTSEDDFSPDKIKEQLLQKLLKEKLHVWLLQKVAEGGKGPSVLDEDGQGVLHFAAALGYDWAIPPTLAAGVSINFRDVNGWTALHWAASCGRERTVGFLISLDAAPGALSDPTPIHPSGQTPADVAASNGHKGIAGYLAESSLSSHLSSLQLKDNKEGGSGETSGVKVVQAVSERTATPIMDGDLAHGLSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQIKEYGDDKFGMSEERALSLVAVKSKSRLGHHDEPVQAAAIRIQNKFRSWKGRKEFLTIRQQIVKIQAHVRGHQVRKNYRKITWSVGIVEKIILRWRRKGSGLRGFKQEA-LPQASSKDMSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEMQETKAVYDKVLNSTEE---VADF--DDLIDLEALLDDDTFM 1107    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RJG1 ((Calmodulin-binding transcription activator 3 like {ECO:0000313|EMBL:PSS30148.1}))

HSP 1 Score: 1034.25 bits (2673), Expect = 0.000e+0
Identity = 571/994 (57.44%), Postives = 694/994 (69.82%), Query Frame = 0
 
Query:   23 ELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYYSA-LSNDYQGSIQATSHIQ---------------------------------------------PIHPS----RESALNIVTGWGNENSAQDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNIDSFDLFNYTESQH---GEQNGQFAA---------AEVGSFMKTEVENSATVDAKANHLALKQPL------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYHNSVPGIMD-DNLNFSSNLNSLIK-DENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKS-SRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            E S+IVLVHYREVKG+R ++NR +  E  I NS E EEI+ ++EV SS+SSKF  + Y V SQTTDT SLNSTQ SEY DAESAY+++  SG  SF + Q    E+M D +SVPYY    SNDY G +   S +                                              P  PS    R   ++  +G GNE   Q   + +   +E  ++   Q  WQ  E +SLH+ KWSM+Q L +  +Y+    L+ G   + DL      QH    +QN  +            E GS MK+E++++ TV+ KA    LKQPL      +GLK LDSF RWM+KELGDVNE+ +QSSSG YWE V +E  V DS+I+SQ     Y + PSLSQDQLFSIIDFSPN AY+G+E+KV+ITG+FL S QD+  CKW+CMFGE EVPAE++ADGVL CHTP H++GRVPFYVTC+NRLACSE+REFE++V N +D D  D S   ++E LL MRF   LS+  A   S       +N + SS ++ L+K D NEW+Q+ MLTS D+FS E +  Q  +KLLKEKLH WL +KVAEGGKGPSV+DE GQGVLHFAAALGYDWAI PT+AAGV+INFRDVNGWTALHWAA  GRE TV FLIS  AAPGALTDP+P +P G+ PA+LA++NGHKGIAGY+AE +LSSHLSSL LKD     +G    +  VQ V+ERT TPI D D   GLSLKDSLAAVC+ATQAAARIHQV+R+QSFQ+KQ+KEY D +FGMS+E AL+L+AVKS SR G  +EPV AAA RIQNKFRS+KGRK+FL  RQ++VKIQAHVRGHQVRKNY+KIIWSVGI++KVILRW+RKG GL  FK E   +  S++ TSSKEDDYDFLKEGRKQTEERL+KALARVKSMVQYPEARDQYRRLLNVV+EM+ETKA  D  +N+++EAA     FDDDL+DLEALL DDTFM
Sbjct:  123 EHSHIVLVHYREVKGHRANFNRIKEAEEAILNSQESEEIVSNSEVYSSVSSKFNPHNYQVTSQTTDT-SLNSTQASEYEDAESAYNHQVSSGFHSFLESQPRVMERMGDGVSVPYYPVPFSNDYLGKLPGISGMDFGSLSEGEKGKTSVNAALTYPSEKHLDLPSWEDVLENSGTGIQSVPFQPSLSANRSDIMSFNSGRGNEPRGQFLTEGYSTKQEVVSYPHQQDKWQISEDDSLHISKWSMDQKLHKDSSYHLTTGLH-GRGHNVDLLYLVGPQHEHPSDQNKHYTQTDFQMHLTYGEGGSAMKSELDSNLTVEEKAEPSPLKQPLLDGLLKEGLKKLDSFDRWMTKELGDVNESHLQSSSGTYWETVEAEDGVDDSSIASQAHLGAYMLGPSLSQDQLFSIIDFSPNWAYAGSEIKVLITGKFLNSQQDLEKCKWSCMFGEVEVPAEIIADGVLRCHTPLHNAGRVPFYVTCSNRLACSEVREFEYRVNNFQDADILDTSYGRTNEILLRMRFGKFLSLESASPPSCVSSPSGENSHLSSKISLLLKEDSNEWEQMLMLTSEDDFSPEKIKEQLLQKLLKEKLHVWLLQKVAEGGKGPSVLDEDGQGVLHFAAALGYDWAILPTLAAGVSINFRDVNGWTALHWAASCGRERTVGFLISLDAAPGALTDPTPIHP-GQTPADLAASNGHKGIAGYLAESSLSSHLSSLQLKDTKESGSGETSGMKVVQTVSERTATPIMDADLAHGLSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQIKEYGDDKFGMSEERALALVAVKSKSRLGHREEPVQAAAIRIQNKFRSWKGRKEFLTIRQQIVKIQAHVRGHQVRKNYRKIIWSVGIVEKVILRWRRKGSGLRGFKQEAFTQA-SSKNTSSKEDDYDFLKEGRKQTEERLEKALARVKSMVQYPEARDQYRRLLNVVTEMQETKAVYDKVLNSTEEAAD----FDDDLIDLEALLDDDTFM 1108    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5Q4G5 (CG-1 domain-containing protein {ECO:0000259|PROSITE:PS51437})

HSP 1 Score: 1021.15 bits (2639), Expect = 0.000e+0
Identity = 560/996 (56.22%), Postives = 691/996 (69.38%), Query Frame = 0
 
Query:    6 GKKGMERQLRKLMKDSRELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYY-SALSNDYQGS---IQATSHIQPIH----------------------PSRESAL-NIVTGWGNENSA-------------QDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYN------QNAMLYEGNIDSFDLFNYTESQHGEQNGQFAAAEVGSFMKTEVENSATVDAKANH-LALKQPL-----DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSI-RCAYHNSVPGIMDDNLNFSSNLNSLIKDEN-EWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLS--SLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            G++    Q R       ELS+IVLVHYREVKGNRT++NR +  EG  P S E EE +P++EV+ S SS F    Y +PSQT D TSLNS Q SEY DAES Y+ ++ S   SF  LQQ   EK+D  L+ PYY S+L+N+YQG    +     I P                        PS E  L N   G G++  A             +   ++FG+ +EFG+HL+ +G WQ+   +S HL  W M+Q +     ++      +    ++G +DS    +   +   + + Q   AE G  +K++ E+S T+D K+ +  A+KQ L     +GLK LDSF RWMSKELGDV E+ +QSSSGAYWE V SE  V DS +S Q   +TY MSPSLSQDQL+SIIDFSPN AY G+EVKV+ITGRFL S Q+  NCKW+CMFGE EVPAE+VA GVL CHT     GRVPFYVTC+NRL+CSE+REFE++  ++ DVD AD   D +SE  L M+F  LL +   +  N  P  + D    +S ++SL+KDEN +W  +  LT+ ++FSSE +  +  +KLLKEKL  WL +K AEGGKGP V+D  GQGVLHFAAALGYDWA+ PT  AGVNINFRDVNGWTALHWAAY GRE TV  LI+ GAAPGAL+DP+PKYP GR PA+LAS+ GHKGIAGY+AE  LSS LS  SLN KD +  +  G  +   VQ V +R PTP+SDGD   GLS+KDSLAAV +ATQAAARIHQV+R+QSFQKKQLKEY +  FG+SDE ALSL+AVK+ + G HDEPVHAAATRIQNKFRS+KGRKDFLI R++++KIQAHVRGHQVRKNYKKIIWSVGI++K+ILRW+R+G GL  FK+ET     S   TS+KEDDYDFLKEGRKQ EERLQKALARVKSMVQYPEARDQYRRLLNVV+E++ETKA   MA++N++E   TAD FDDDL+D+EALL DDT M
Sbjct:  182 GEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTAD-TSLNSAQASEYEDAESVYNNQASSRFHSFRDLQQPVVEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPRKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVGSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA---VQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAHVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA---MALSNAEE---TAD-FDDDLVDIEALL-DDTLM 1164    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834ZPH2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8406012.1}))

HSP 1 Score: 1020.38 bits (2637), Expect = 0.000e+0
Identity = 537/1001 (53.65%), Postives = 674/1001 (67.33%), Query Frame = 0
 
Query:   20 DSRELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLEEEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSD----AEKMDDALSVPYYSA-LSNDYQGSIQATSHIQPIHPSRESAL---NI------------VTGWGNENSAQDCGDAF------------------------GKIE-----------EFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYNQNAMLYEGNI--------DSFDLFNYTESQHGEQNG---QFAAAEVGSFMKTEVENSATVDAKANH-LALKQPL-------DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSIRCAYH-NSVPGIMDDNLNFSSNLNSLIKD-ENEWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLSSLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            D  +  +IVLVHYREVKGN+T++ R R TE VIP+S         ++ S +SS F      +PSQTTDTTSLNS QTSEY DAES  ++++ S   SF  LQQS+      KMD  L   Y+    SNDYQG   A S    I  ++E ++   N+            +T W  E+  + C   +                        G +E           E GNH + Q  WQ  E +S HL KW ++Q L     Y+ +   +E           + F +    ++ H  QN    Q + A++G  +K+  E   T+D   N+    KQPL       +GLK LDSF RWMSKELG+V+E+ +QSSSG YW  V     V DS++S Q+  + Y +SPSLSQDQL+SIIDFSPN AY G+E KV+ITG+FLKS QDV  CKW+CMFGE EVPAEV+ DGVL CH P H +G VPFYVTC+NRLACSE+REFE++V   RD+D  D+ SD+++E L H+R   LLS+R   H N +   +D N + SS + SL+K  ++EW Q+  LTS +EFSS  +  Q  +K+LKEKLH WL +KV E GKGP+V+D+ GQGVLH AAALGYDW I PT+AAGV+INFRDVNGWTALHWAA+ GRE TV  L+S GAAPGALTDP+PK+P GR PA+LAS  GHKGIAGY+AE +L++HLSSL LKD    D   +P +  VQ+++ER+ TPISD D   GLSLKDSL AVC+ATQAAARIHQV+R+QSF KK+L EY+  +FGMSDE ALSL+++K+++ GQHDEPVHAAA RIQNKFR +KGRK+FLI RQR+VK+QAHVRGHQVRK Y+ IIWSVGI++KVILRW+RKG GL  F++E  +E P T+G  S +DDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVV+E +ETK   D  +N+S+E A    Y  DD++DLE LL DDTFM
Sbjct:   41 DCWDFMHIVLVHYREVKGNKTNFGRARETEEVIPSS---------QIGSPMSSNFLTNYNRLPSQTTDTTSLNSAQTSEYEDAESD-NHQASSRFHSFLDLQQSEEWPVMGKMDAGLLNSYFPVHCSNDYQGKQSAISGTNAISLAQEDSIRNNNVAGLTLEPRKQLDLTSW--EDVLEHCTTGYQGASFQPPISTEPATMGIIPKLENGLLEHLFTDELSIKQEVGNHPQDQEKWQISEDDSSHLSKWPVDQKLHSDLAYDMSTTFHEQKTHVNSHNASEPFCIHADQQNGHPTQNNLQLQLSNADLGCLLKSNSETELTIDGNVNYSFTSKQPLLDCSRTEEGLKKLDSFTRWMSKELGEVSESHMQSSSGVYWSTV-ENGNVDDSSMSPQVHLDAYLLSPSLSQDQLYSIIDFSPNWAYMGSETKVLITGKFLKSQQDVAKCKWSCMFGEVEVPAEVLVDGVLRCHAPLHTAGMVPFYVTCSNRLACSEVREFEYRVSRTRDIDITDICSDNTNEMLFHIRLGKLLSLRSESHPNYLSSRVDGNPHISSKITSLMKGGDDEWLQMVKLTSEEEFSSGQVKEQLLQKILKEKLHEWLLQKVTEDGKGPNVLDKEGQGVLHLAAALGYDWVIPPTIAAGVSINFRDVNGWTALHWAAFCGRERTVVALVSLGAAPGALTDPTPKFPSGRPPADLASGEGHKGIAGYLAESSLTTHLSSLTLKDTKEGDVLEIPGVKAVQSISERSATPISDSDVPDGLSLKDSLTAVCNATQAAARIHQVFRVQSFHKKKLIEYEGDKFGMSDEQALSLISLKTNKPGQHDEPVHAAAIRIQNKFRGWKGRKEFLIIRQRIVKLQAHVRGHQVRKRYRNIIWSVGIVEKVILRWRRKGSGLRGFRSEALIEAPKTEGRPSNDDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEFQETKVVYDKVINSSEETA----YGYDDMIDLEVLLDDDTFM 1024    
BLAST of DCAR_011676 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4UPL8 (CG-1 domain-containing protein {ECO:0000259|PROSITE:PS51437})

HSP 1 Score: 1018.45 bits (2632), Expect = 0.000e+0
Identity = 560/996 (56.22%), Postives = 691/996 (69.38%), Query Frame = 0
 
Query:    6 GKKGMERQLRKLMKDSRELSNIVLVHYREVKGNRTHYNRTRGTEGVIPNSLE-EEILPDTEVDSSLSSKFQQYGYNVPSQTTDTTSLNSTQTSEYADAESAYSYRSGSGLQSFHKLQQSDAEKMDDALSVPYY-SALSNDYQGS---IQATSHIQPIH----------------------PSRESAL-NIVTGWGNENSA-------------QDCGDAFGKIEEFGNHLRGQGGWQSFEGESLHLPKWSMEQNLQQYPNYN------QNAMLYEGNIDSFDLFNYTESQHGEQNGQFAAAEVGSFMKTEVENSATVDAKANH-LALKQPL-----DGLKNLDSFGRWMSKELGDVNEAQIQSSSGAYWEAVGSEVAVVDSNISSQLEFETYTMSPSLSQDQLFSIIDFSPNCAYSGTEVKVVITGRFLKSHQDVVNCKWACMFGEAEVPAEVVADGVLHCHTPHHDSGRVPFYVTCANRLACSEIREFEFKVYNLRDVDAADLSSDSSSEALLHMRFTNLLSI-RCAYHNSVPGIMDDNLNFSSNLNSLIKDEN-EWQQIFMLTSTDEFSSETLANQFPEKLLKEKLHAWLREKVAEGGKGPSVVDEGGQGVLHFAAALGYDWAITPTVAAGVNINFRDVNGWTALHWAAYFGREHTVPFLISQGAAPGALTDPSPKYPRGRDPAELASANGHKGIAGYIAECALSSHLS--SLNLKDANNCDAGGVPSLNDVQAVAERTPTPISDGDFQQGLSLKDSLAAVCHATQAAARIHQVYRIQSFQKKQLKEYDDSQFGMSDEHALSLLAVKSSRAGQHDEPVHAAATRIQNKFRSYKGRKDFLIFRQRVVKIQAHVRGHQVRKNYKKIIWSVGILDKVILRWKRKGRGLSSFKTETRLEGPSTQGTSSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVSEMKETKATDDMAMNNSDEAAVTADYFDDDLLDLEALLGDDTFM 944
            G++    Q R       ELS+IVLVHYREVKGNRT++NR +  EG  P S E EE +P++EV+ S SS F    Y +PSQT D TSLNS Q SEY DAES Y+ ++ S   SF  LQQ   EK+D  L+ PYY S+L+N+YQG    +     I P                        PS E  L N   G G++  A             +   ++FG+ +EFG+HL+ +G WQ+   +S HL  W M+Q +     ++      +    ++G +DS    +   +   + + Q   AE G  +K++ E+S T+D K+ +  A+KQ L     +GLK LDSF RWMSKELGDV E+ +QSSSGAYWE V SE  V DS +S Q   +TY MSPSLSQDQL+SIIDFSPN AY G+EVKV+ITGRFL S Q+  NCKW+CMFGE EVPAE+VA GVL CHT     GRVPFYVTC+NRL+CSE+REFE++  ++ DVD AD   D +SE  L M+F  LL +   +  N  P  + D    +S ++SL+KDEN +W  +  LT+ ++FSSE +  +  +KLLKEKL  WL +K AEGGKGP V+D  GQGVLHFAAALGYDWA+ PT  AGVNINFRDVNGWTALHWAAY GRE TV  LI+ GAAPGAL+DP+PKYP GR PA+LAS+ GHKGIAGY+AE  LSS LS  SLN KD +  +  G  +   VQ V +R PTP+SDGD   GLS+KDSLAAV +ATQAAARIHQV+R+QSFQKKQLKEY +  FG+SDE ALSL+AVK+ + G HDEPVHAAATRIQNKFRS+KGRKDFLI RQ+++KIQA+VRGHQVRKNYKKIIWSVGI++K+ILRW+R+G GL  FK+ET     S   TS+KEDDYDFLKEGRKQ EERLQKALARVKSMVQYPEARDQYRRLLNVV+E++ETKA   MA++N++E   TAD FDDDL+D+EALL DDT M
Sbjct:  106 GEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTAD-TSLNSAQASEYEDAESVYNNQASSRFHSFRDLQQPVVEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPRKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQTSRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVGSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA---VQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRQQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA---MALSNAEE---TAD-FDDDLVDIEALL-DDTLM 1088    
Match NameStatsDescription
A0A5B6Z4F1E-Value: 0.000e+0, PID: 60.63(Putative calmodulin-binding transcription activat... [more]
F6HWM2E-Value: 0.000e+0, PID: 58.59CG-1 domain-containing protein {ECO:0000259|PROSIT... [more]
A0A5J5AIJ3E-Value: 0.000e+0, PID: 58.98CG-1 domain-containing protein {ECO:0000259|PROSIT... [more]
A0A4S4EDT1E-Value: 0.000e+0, PID: 58.03(Uncharacterized protein {ECO:0000313|EMBL:THG1450... [more]
A0A7J0F0G8E-Value: 0.000e+0, PID: 57.70(Signal responsive 1 {ECO:0000313|EMBL:GFY91377.1}... [more]
A0A2R6RDE6E-Value: 0.000e+0, PID: 57.80(Calmodulin-binding transcription activator 3 like... [more]
A0A2R6RJG1E-Value: 0.000e+0, PID: 57.44(Calmodulin-binding transcription activator 3 like... [more]
A0A2H5Q4G5E-Value: 0.000e+0, PID: 56.22CG-1 domain-containing protein {ECO:0000259|PROSIT... [more]
A0A834ZPH2E-Value: 0.000e+0, PID: 53.65(Uncharacterized protein {ECO:0000313|EMBL:KAF8406... [more]
V4UPL8E-Value: 0.000e+0, PID: 56.22CG-1 domain-containing protein {ECO:0000259|PROSIT... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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