Resource Type:
Polypeptide
Name:
DCAR_025670
Identifier:
DCAR_025670.mRNA-protein
Sequence:
MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQP
VAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHY
GELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLR
SVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDL
GEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLERED
IEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRIS
LCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQNPSALNSPVSNQSVE
ISSSVPLESAADKEKEIETLTSLLDMQLLASNPPAPVLPDLMAILAAQAK
GMEKGASSAGVSSSRFGAATSGNLESPTISTAHTNGAAEVTHLGVVGRGV
KRVVMHSESTDSSPMKKAALDPPADKANDKAS*
Sequence Length:
483
Sequence Checksum:
7eee95f9a93e5a145dfca7a14fdb914c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_025670, derives from mRNA, DCAR_025670. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAK5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR88015.1}))
HSP 1 Score: 476.863 bits (1226), Expect = 2.493e-163
Identity = 279/498 (56.02%), Postives = 351/498 (70.48%), Query Frame = 0
Match: A0A2R6PAK5 ((Uncharacterized protein {ECO:0000313|EMBL:PSR88015.1}))
HSP 1 Score: 476.863 bits (1226), Expect = 2.493e-163
Identity = 279/498 (56.02%), Postives = 351/498 (70.48%), Query Frame = 0
Query: 1 MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQNPSALNSPV----SNQSVEISS--SVPLESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATSG-NLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
M DE A + +APL+ +TQA SVEATIESN +GG ES+CN + A +SD E SL+ A+ELME+G KA+KD DYAEA+DCYSRALEIR H+GEL+PECVNAY+KYG ALLYKAQ+EAD LG VPKKE + DK GS+++ + ESS SV+ +A ++ SS H D ++ +GKD+ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLK L++LERL EPDSR+IA L NFRI LCLEIG K +EAIPYCQKAISIC SR++RL++E ++PS S+++ + SS S S DKE EIETL L D+ L SNP + +L D++ +++A+A+G+EK ASS+ SS + G A+S +L+SPT+STAHTNGAA VT LGVVGRG+KR M+S + +SSPMKK+ LDP DK + +AS
Sbjct: 1 MTDE-----APISEIAPLNGDKTQA-SVEATIESNTLGGAESSCNNNDVETSALTSDGERGKSLEYAEELMERGSKAAKDGDYAEATDCYSRALEIRVVHFGELAPECVNAYYKYGCALLYKAQEEADPLGTVPKKEGESQQFSDKIGSVKNAINGESSVASVLSNAEQDDSSNHGDGAPHDGSSGKDQEEEDEESDAEDLAEADEDESDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKGLAILERLVEPDSRRIAEL----------------NFRICLCLEIGSKAEEAIPYCQKAISICKSRVQRLVNELKSPSVSTGTSAASESDETGQFSSNGSQTSHSVVDKEAEIETLGGLSGELEKKLEDLLQLVSNPTS-ILSDILGMVSAKARGIEKNASSSVTSSPQLGVASSSRDLDSPTVSTAHTNGAAGVTDLGVVGRGIKRTRMNSVAAESSPMKKSELDPTTDKGDGQAS 475
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7I261 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5958188.1}))
HSP 1 Score: 472.241 bits (1214), Expect = 6.925e-161
Identity = 279/517 (53.97%), Postives = 344/517 (66.54%), Query Frame = 0
Match: A0A7J7I261 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5958188.1}))
HSP 1 Score: 472.241 bits (1214), Expect = 6.925e-161
Identity = 279/517 (53.97%), Postives = 344/517 (66.54%), Query Frame = 0
Query: 20 PVETQAGSVEATIESNAVGGTESTCNTT--KQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEI---------RASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ--NPSALNSPVS--NQSVEISS--SVPLESAADKEKEIETLT-----------------------------SLLDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFG-AATSGNLESPTISTAHTNGAAE-VTHLGVVGRGVKRVVMHSE-------STDSSPMKKAALDPPADKANDKA 481
P + SVEATIESNA GGTES+C+ + +SD + SL+ ADELME+G KASKD DY+EA+DCYSR+LEI A+HYGEL+PECVN+Y+KYG ALLYKAQ+EAD LGAVPKKE + DKDGS+++ ESS+ SV + GSS Q+ ++ GKD+ E+D SD EDL E DEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKAL++LERL EPDSR IA LE FRNFRI LCLEIG K +EAIPYCQKA+SIC SR++RLM+E++ + S S VS +Q+V++SS S +S DKE EIETLT +L D+Q L SNP + +L D++ +++A+A+G K A S +S+S G A++SG+L SPT+STAHTNGAA VTHLGVVGRGVKRV M S + +SSPMKK LDP DK + K
Sbjct: 12 PQNAEQASVEATIESNAEGGTESSCDNINLQTSTLTTSDGDREKSLEYADELMERGSKASKDHDYSEATDCYSRSLEISCGKDAVLMWAAHYGELAPECVNSYYKYGCALLYKAQEEADPLGAVPKKEGESQQFSDKDGSVKNAVIGESSSASVSGNVELEGSSKPQEGAADDVSGGKDQEENDEESDAEDLPEGDEDESDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALAILERLVEPDSRYIAELE-------------FRNFRICLCLEIGSKAEEAIPYCQKALSICKSRVQRLMNESKILSESTATSIVSELDQTVQLSSNGSQSNDSVTDKEAEIETLTGLSDELEKKASLTEVPIRCQYFTIHDTYLTLEDLQQLVSNPTS-ILSDILGMISAKARGTNKNAPSV-MSTSNLGVASSSGDLNSPTVSTAHTNGAAAGVTHLGVVGRGVKRVSMSSAGAAESAGTAESSPMKKPGLDPTPDKGDGKG 513
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WNQ3 ((Uncharacterized protein {ECO:0000313|EMBL:THG13377.1}))
HSP 1 Score: 486.108 bits (1250), Expect = 4.287e-158
Identity = 280/488 (57.38%), Postives = 343/488 (70.29%), Query Frame = 0
Match: A0A4V3WNQ3 ((Uncharacterized protein {ECO:0000313|EMBL:THG13377.1}))
HSP 1 Score: 486.108 bits (1250), Expect = 4.287e-158
Identity = 280/488 (57.38%), Postives = 343/488 (70.29%), Query Frame = 0
Query: 20 PVETQAGSVEATIESNAVGGTESTCNTT--KQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ--NPSALNSPVS--NQSVEISS--SVPLESAADKEKEIETLTSLL-------------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFG-AATSGNLESPTISTAHTNGAAE-VTHLGVVGRGVKRVVMHSE-------STDSSPMKKAALDPPADKA 477
P + SVEATIE NA GGTES+C+ + +SD + SL+ ADELME+G KASKD DY+EA+DCYSR+LEIRA+HYGEL+PECVN+Y+KYG ALLYKAQ+EAD LGAVPKKE + DKDGS+++ ESS+ SV + GSS Q+ ++ GKD+ E+D SDTEDL E DEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKAL++LERL EPDSR IA LE FRNFRI LCLEIG K +EAIPYCQKA+SIC SR++RLM+E++ + S S VS +Q+V++SS S +S DKE EIETLT L D+Q L SNP + +L D++ +++A+A+G K A S +S+S G A++SG+L SPT+STAHTNGAA VTHLGVVGRGVKRV M S + +SSPMKK LDP DKA
Sbjct: 12 PQNAEQASVEATIEWNAEGGTESSCDNINLQTSTLTTSDGDREKSLEYADELMERGSKASKDHDYSEATDCYSRSLEIRAAHYGELAPECVNSYYKYGCALLYKAQEEADPLGAVPKKEGESQQFSDKDGSVKNAVIGESSSASVSGNVELEGSSKPQEGAADDVSGGKDQEENDEESDTEDLPEGDEDESDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALAILERLVEPDSRYIAELE-------------FRNFRICLCLEIGSKAEEAIPYCQKALSICKSRVQRLMNESKILSESTATSIVSELDQTVQLSSNGSQSNDSVTDKEAEIETLTGLSDELEKKASLTELEDLQQLVSNPTS-ILSDILGMISAKARGTNKNAPSV-MSTSNLGVASSSGDLNSPTVSTAHTNGAAAGVTHLGVVGRGVKRVSMSSAGAAESAGTAESSPMKKPGLDPTPDKA 484
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RLB9 ((Uncharacterized protein {ECO:0000313|EMBL:PSS30785.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 3.153e-157
Identity = 278/498 (55.82%), Postives = 349/498 (70.08%), Query Frame = 0
Match: A0A2R6RLB9 ((Uncharacterized protein {ECO:0000313|EMBL:PSS30785.1}))
HSP 1 Score: 461.455 bits (1186), Expect = 3.153e-157
Identity = 278/498 (55.82%), Postives = 349/498 (70.08%), Query Frame = 0
Query: 1 MADEIAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQNPSALNSPV----SNQSVEI--SSSVPLESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFG-AATSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
MADE A + +AP + ++QA SVEATIESN VGG ES+CN + A +SD E SL ADELME+G A+KD+DYAEA+DCYSRALEIR H+GEL+PECVNAY+KYG ALLYKAQ+EAD LG VPKKE D++GS+++ + ESS SV +A ++GSS D V ++ +GKD+ EDD SD EDL EADEDESDLDLAWKMLD+ARAI K DTMEKVDILSALAEV+LERED+E S SDYLKAL++LERL EPD+R IA L NFRI LCLEIG K EAIPYCQKA+SIC +R++RL++E ++ S S+++V+ S S S DK+ EIETLT L D+Q L SNP + +L D++ +++A+A+G+EK ASS+ +SS + G A++SG+L+SPT+STAHTNGAA VT LGVVGRGVKR M+S + +SSPMKK LDP DK +AS
Sbjct: 1 MADE-----APISEIAPPNAEKSQA-SVEATIESNTVGGAESSCNNNDVESSAVTSDGERERSLGYADELMERGSNAAKDRDYAEATDCYSRALEIRVGHFGELAPECVNAYYKYGCALLYKAQEEADPLGTVPKKEVESPQLSDRNGSVKNAINRESSIASVSSNAEQDGSSNRGDGVPDDGSSGKDQEEDDEESDDEDLAEADEDESDLDLAWKMLDVARAIVVKHCGDTMEKVDILSALAEVALEREDVETSLSDYLKALAILERLVEPDNRHIAEL----------------NFRICLCLEIGSKAAEAIPYCQKAMSICKARVQRLVNELKSSSVSTGTSAASESDETVQFSSSGSQSNHSVVDKDAEIETLTGLSSELEKKLEDLQQLVSNPTS-ILSDILGMVSARARGIEKNASSSVMSSPQLGVASSSGDLDSPTVSTAHTNGAAGVTDLGVVGRGVKRTRMNSVTAESSPMKKPELDPTPDKGEGQAS 475
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZYJ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49094.1}))
HSP 1 Score: 461.07 bits (1185), Expect = 4.295e-157
Identity = 284/498 (57.03%), Postives = 357/498 (71.69%), Query Frame = 0
Match: A0A5B6ZYJ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49094.1}))
HSP 1 Score: 461.07 bits (1185), Expect = 4.295e-157
Identity = 284/498 (57.03%), Postives = 357/498 (71.69%), Query Frame = 0
Query: 5 IAHELAELEALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-----QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ-NPSAL---NSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
+A E E +AP + V++QA S+EATIESNA GGTES+CN + A +SD + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR +HYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE + DKDGS++S + ESS S +A ++ SS HQ+ ++ GK++ EDD SD EDL E D+DESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKALS+LE L EPDSR IA L NFRI LCLEIG K QEAIPYCQKAIS+CNS+++RLM E + +P + ++PV +Q+V+ SS+ +S ADKE EIETL L D+Q L SNP + +L D+M +++A+++G EK SSA +SSS+ GAA +SG+ +SPT+STAHTNGA+ VTHLGVVGRG+KRV +SES +S+PMKK ALDP ADK + AS
Sbjct: 1 MADEAPTSETVAP-NVVQSQA-SIEATIESNAQGGTESSCNNNNNNNNAETSALTSDADREKSLEYADELMERGSKALKENDYAEATECFSRALEIRVAHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESQQDCDKDGSVKSAINGESSVASASSNAEEDASSNHQEGAPDDVSGGKEQEEDDEESDVEDLAEVDDDESDLDLAWKMLDLARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALSILECLVEPDSRHIAEL----------------NFRICLCLEIGSKAQEAIPYCQKAISVCNSQVQRLMCEVKTSPGSTVTSSAPVFDQTVQHSSNGLQCDDSVADKEAEIETLAGLSGELEKKLEDLQQLVSNPKS-ILSDIMGMMSAKSRGTEKSVSSAVMSSSQMGAANSSGDFDSPTVSTAHTNGASGVTHLGVVGRGIKRVSTNSESAESNPMKKPALDPSADKGDGNAS 479
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A240 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49093.1}))
HSP 1 Score: 459.529 bits (1181), Expect = 1.697e-156
Identity = 281/490 (57.35%), Postives = 350/490 (71.43%), Query Frame = 0
Match: A0A5B7A240 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49093.1}))
HSP 1 Score: 459.529 bits (1181), Expect = 1.697e-156
Identity = 281/490 (57.35%), Postives = 350/490 (71.43%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK-----QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGK--DECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ----NPSALNSPVSNQSVEISSSVPLESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
E +AP + V++QA S+EATIESNA GGTES+CN + A +SD + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR +HYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE + DKDGS+++ + ESSA SV +A ++GSS +Q+ + +GK +E ED+ SD EDL EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LEREDIE S SDYLKALS+LERL EPD+R IA L NFRI LCLEIG K QEAIPYCQKAIS+C SR+++LM+E + + ++ +P S+ +V+ SS DKE EI TLT L D+Q L SNP + +L D++ +++A+ +G E GA SA +SSSR GAA +SGN +SPT+STAHTNGAA VTHLGVVGRGVKRV+M+S S+DS MKK ALDP K + AS
Sbjct: 9 ETVAP-NVVQSQA-SIEATIESNAQGGTESSCNNNNNNNNAETSALTSDADREKSLEYADELMERGSKALKENDYAEATECFSRALEIRVAHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESQQDSDKDGSVKTAVTCESSAASVSSNAEQDGSSINQEGAPDNVSSGKEVEEEEDEEESDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDIETSLSDYLKALSILERLVEPDNRHIAEL----------------NFRICLCLEIGLKAQEAIPYCQKAISVCQSRVQQLMNEMKSSTGSTASSAAPESDHTVQYSSX-------DKEAEILTLTGLSSELEKKLEDLQQLVSNPTS-ILSDILGMMSAKVRGAENGA-SAVMSSSRMGAANSSGNFDSPTVSTAHTNGAAGVTHLGVVGRGVKRVLMNSGSSDSDSMKKPALDPSPGKDDGNAS 471
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5APR9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531776.1}))
HSP 1 Score: 457.218 bits (1175), Expect = 1.334e-155
Identity = 277/487 (56.88%), Postives = 342/487 (70.23%), Query Frame = 0
Match: A0A5J5APR9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8531776.1}))
HSP 1 Score: 457.218 bits (1175), Expect = 1.334e-155
Identity = 277/487 (56.88%), Postives = 342/487 (70.23%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNE-DDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQ----NPSALNSPVSNQSVEISSSVPLE---SAADKEKEIETLTS--------LLDMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAA-TSGNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
E +AP VE S+EATIES GG +S+CN T + A +SD + SL+ A+ELM+KG KA K+ DYAEA+DC+SRALEIRA+HYGEL+ ECVNAY+KYG +LLYKAQDEAD L VPKK+ + DKDGS +S + ESS SV +A ++ SS HQ+ ++ +G + EDD SD EDL EADEDESDLDLAWKMLD+ARAI EK +TMEKVDILSALAEV+LERED+E S SDYLKALS+LER+ EPDSR IA L NFRI LCLEIG K EAIPYCQKAISIC SR++RLM+E + + + ++P +Q+V+ SS+ LE S ADKE EIETLT L D+Q L SNP + +L D++A+++A++ G EK AS A +SSSR G A +SG+ +SPT+STAHTNGA VT LGVVGRGVKRV M S S + +PMKK ALDP ADK + AS
Sbjct: 9 ETVAP--NVEQSQVSIEATIESKVQGGPDSSCNNTVETSALTSDAGHEKSLEFAEELMKKGSKAQKEHDYAEATDCFSRALEIRAAHYGELALECVNAYYKYGCSLLYKAQDEADPLATVPKKDSESQQDSDKDGSTKSAINGESSVASVSSNAEEDASSNHQESAPDDVSGSGNGQEEDDEESDVEDLAEADEDESDLDLAWKMLDVARAIVEKHPGNTMEKVDILSALAEVALEREDVETSLSDYLKALSILERVVEPDSRHIADL----------------NFRICLCLEIGSKADEAIPYCQKAISICKSRVQRLMNELKSSSGSTATSSAPEFDQTVQHSSN-GLECDDSVADKEAEIETLTGVSSELEKKLEDLQQLVSNPKS-ILSDILAMMSAKSSGTEKSASLAVMSSSRMGTANSSGDFDSPTVSTAHTNGATGVTDLGVVGRGVKRVSMSSGSAECNPMKKPALDPSADKGDGNAS 475
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6I231 ((Uncharacterized protein {ECO:0000313|EMBL:CCB60998.1}))
HSP 1 Score: 453.751 bits (1166), Expect = 3.805e-154
Identity = 269/484 (55.58%), Postives = 336/484 (69.42%), Query Frame = 0
Match: F6I231 ((Uncharacterized protein {ECO:0000313|EMBL:CCB60998.1}))
HSP 1 Score: 453.751 bits (1166), Expect = 3.805e-154
Identity = 269/484 (55.58%), Postives = 336/484 (69.42%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDS-VDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDE----AQNPSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTA-HTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKAND 479
EALAP V S EATIESNA G TES+CN A SD + SL+ A+ELMEKG KA K+ D++EA+DC+SRALEIR +H+GEL+ ECVN Y+KYG ALLYKAQ+EAD L +P KE + +KDGS+++ + ESS S V+A ++GSS Q ++D GK++ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LEREDIE S SDY KALS+LERL EPDSR IA L NFRI LCLEIG K QEAIPYCQ+AISIC SR++RL +E +++P+ +P +QS + SS+V S +DKE EIETL L D+Q L SNP + +L +++ +++A+A+G +KGAS + + SS+ G+A S G +SPT+STA HTNGAA VTHLGVVGRGVKRV M+S + +SSPMKK LD DK +D
Sbjct: 19 EALAPTGQVAQ--SSNEATIESNAQGDTESSCNNNADTSARPSDADREKSLEYAEELMEKGSKAVKESDFSEATDCFSRALEIRVAHHGELAFECVNTYYKYGCALLYKAQEEADPLATMPNKEAESHENSNKDGSMKNAVNDESSTAS--VNAEQDGSSNDQKVAADDDTNGKEQEEEDEESDDEDLAEADEDESDLDLAWKMLDVARAIVEKHSAADTMEKVDILSALAEVALEREDIETSLSDYQKALSILERLVEPDSRHIAEL----------------NFRICLCLEIGSKAQEAIPYCQRAISICKSRVQRLSNEIKSLSESPAISPTPELDQSAQQSSNVSQAGNSISDKESEIETLNGLASELEKKLEDLQQLVSNPTS-ILSEILGMMSAKARGADKGASPSVMGSSQIGSANSHGGFDSPTVSTASHTNGAAGVTHLGVVGRGVKRVSMNSGTAESSPMKKPPLDSSLDKGDD 481
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QNV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7999840.1}))
HSP 1 Score: 450.669 bits (1158), Expect = 6.231e-153
Identity = 272/489 (55.62%), Postives = 337/489 (68.92%), Query Frame = 0
Match: A0A5N6QNV8 ((Uncharacterized protein {ECO:0000313|EMBL:KAE7999840.1}))
HSP 1 Score: 450.669 bits (1158), Expect = 6.231e-153
Identity = 272/489 (55.62%), Postives = 337/489 (68.92%), Query Frame = 0
Query: 15 LAPLDPVETQAGSVEATIESNAVGGTESTCNTTKQPVAE------SSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNED--DAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN-PSALNSPVS---NQSVEISSSVPLESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
+A +P+ETQ S EATI+SN GGTESTCN SS + SL+ ADELMEKG KA KD D++EA++C+SRALEIR +HYGELSPECV+AY+KYG ALLYKAQDEAD LG VPKKE + KDGS+++V + ESS SV + + S+ HQ+ ++ +GKD+ E+D SD EDL EADEDESDLDLAWKMLD+ARAI EK SVDTMEKVDILSALAEV+LEREDIE+S SDY KALS+LE+L EPDSR IA L NFRISLCLEIG K QEAIPYCQKAI++C SR++RLM+E ++ P + S + +Q V S+S S +K EIETLT L D+Q LA NP + +L +L+ + +A+ G EKGAS +SSSR A S G+ +SPT+STAHTNG++ VTHLGVVGRGVKRV+M+S + +SSPMKK LD ++A S
Sbjct: 14 MAAPNPLETQT-SNEATIQSNTQGGTESTCNNINHHNNSNSAAEGSSAGDREKSLEFADELMEKGSKAIKDNDFSEAAECFSRALEIRVAHYGELSPECVHAYYKYGCALLYKAQDEADPLGTVPKKEGDSQQESAKDGSVKNVINGESSTASVSGNVEEEASTNHQEGAGDDGTVSSGKDQEEEDEDSDVEDLAEADEDESDLDLAWKMLDVARAIVEKHSVDTMEKVDILSALAEVALEREDIESSLSDYEKALSLLEQLVEPDSRLIAEL----------------NFRISLCLEIGSKPQEAIPYCQKAIAVCKSRVQRLMNEVKSVPESTTSSSASELDQGVISSASHSDNSVTEKGAEIETLTDLCGELEKKLEDLQQLALNPKS-ILSELLGMASAKLTGCEKGASPTVMSSSRMATADSNGDFDSPTVSTAHTNGSSGVTHLGVVGRGVKRVLMNSGTAESSPMKKPTLDSSENEAGGNTS 484
BLAST of DCAR_025670 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BVZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547283.1}))
HSP 1 Score: 449.129 bits (1154), Expect = 1.982e-152
Identity = 270/488 (55.33%), Postives = 338/488 (69.26%), Query Frame = 0
Match: A0A5J5BVZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547283.1}))
HSP 1 Score: 449.129 bits (1154), Expect = 1.982e-152
Identity = 270/488 (55.33%), Postives = 338/488 (69.26%), Query Frame = 0
Query: 13 EALAPLDPVETQAGSVEATIESNAVGGTESTCNTTK---QPVAESSDPENLNSLKQADELMEKGDKASKDQDYAEASDCYSRALEIRASHYGELSPECVNAYFKYGRALLYKAQDEADVLGAVPKKEKPYENSDDKDGSLRSVKSVESSATSVVVDASKNGSSTHQDEVLNEDDAGKDECEDDNGSDTEDLGEADEDESDLDLAWKMLDIARAIAEKDSVDTMEKVDILSALAEVSLEREDIEASTSDYLKALSMLERLAEPDSRQIASLEQSFSGFKCYALTGFRNFRISLCLEIGDKTQEAIPYCQKAISICNSRIKRLMDEAQN----PSALNSPVSNQSVEISSSVPL--ESAADKEKEIETLTSLL--------DMQLLASNPPAPVLPDLMAILAAQAKGMEKGASSAGVSSSRFGAATS-GNLESPTISTAHTNGAAEVTHLGVVGRGVKRVVMHSESTDSSPMKKAALDPPADKANDKAS 482
E++AP VE S+EATIESNA GGTES+CN + A +S+ + SL+ ADELME+G KA K+ DYAEA++C+SRALEIR SHYGEL+ ECVNAY+KYG ALLYKAQ+EAD L AVPKKE D+DGS+++ + ESSA SV +A +NGSS +Q+ ++ G ED+ SD EDL EADEDE+DLDLAWKMLD+ARAI EK S DTMEKVDILSALAEV+LERED+E S SDYLKALS+LERL EPDSR IA+L NFRI LCLEIG K EAIPYCQKAIS+C+SR+ RL++EA+ + +P +Q+V+ +SS +S ADKE EI TLT L D++ L SNP + +L +++ +++ + + E G SSA +SSS+ GAA S G +S T STAHTN AA VT LGVVGRGVKRV+M+S +T+S +KK ALDP K N AS
Sbjct: 9 ESVAP--NVELLQTSIEATIESNAQGGTESSCNNNNNVVETSALTSEADREKSLEYADELMERGSKAVKEHDYAEATECFSRALEIRVSHYGELALECVNAYYKYGCALLYKAQEEADPLAAVPKKEGESRQDSDRDGSVKNALNCESSAASVCSNAEQNGSSINQEGAPDDVSCGNKPEEDEEESDVEDLAEADEDETDLDLAWKMLDVARAIVEKHSGDTMEKVDILSALAEVALEREDVETSLSDYLKALSILERLVEPDSRHIANL----------------NFRICLCLEIGSKALEAIPYCQKAISVCHSRVHRLINEAKRSSGSIGSSAAPECDQTVQYASSGSQTDDSVADKEAEIATLTDLTGELEKKLEDLKQLVSNPTS-ILSEILGLVSVKVR-TENG-SSALMSSSQMGAAKSGGGFDSTTFSTAHTNWAAGVTDLGVVGRGVKRVLMNSGTTESGSIKKPALDPSLAKGNGNAS 475
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6PAK5 | E-Value: 2.493e-163, PID: 56.02 | (Uncharacterized protein {ECO:0000313|EMBL:PSR8801... [more] |
| A0A7J7I261 | E-Value: 6.925e-161, PID: 53.97 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5958... [more] |
| A0A4V3WNQ3 | E-Value: 4.287e-158, PID: 57.38 | (Uncharacterized protein {ECO:0000313|EMBL:THG1337... [more] |
| A0A2R6RLB9 | E-Value: 3.153e-157, PID: 55.82 | (Uncharacterized protein {ECO:0000313|EMBL:PSS3078... [more] |
| A0A5B6ZYJ8 | E-Value: 4.295e-157, PID: 57.03 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4909... [more] |
| A0A5B7A240 | E-Value: 1.697e-156, PID: 57.35 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4909... [more] |
| A0A5J5APR9 | E-Value: 1.334e-155, PID: 56.88 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8531... [more] |
| F6I231 | E-Value: 3.805e-154, PID: 55.58 | (Uncharacterized protein {ECO:0000313|EMBL:CCB6099... [more] |
| A0A5N6QNV8 | E-Value: 6.231e-153, PID: 55.62 | (Uncharacterized protein {ECO:0000313|EMBL:KAE7999... [more] |
| A0A5J5BVZ5 | E-Value: 1.982e-152, PID: 55.33 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |