DCAR_021206

Resource Type: 
Polypeptide
Name: 
DCAR_021206
Identifier: 
DCAR_021206.mRNA-protein
Sequence: 
MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQSSGSSQLPLEVQ
EDNTLVTSTHVKGSQLMELNWKSEEVKLPFQNESVAGVKKSCMRKSQSLG
SGLDQKRRLSGGSDSENETVQGFSSERSHEGISSAVSVCDKDPEAPCSTS
LLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSET
PRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFVPQI
IQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKI
THQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGENESAFSNHQED
DVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIP
FLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELT
RLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVL
DLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLL
PHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHG
VAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVRSTSTRDKINARPSFV
GNKLLSLRPDLAMQRSRSEGNLGGA*
Sequence Length: 
676
Sequence Checksum: 
cee2926c4a4e17a07fa077767edd30d4
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_021206, derives from mRNA, DCAR_021206.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B2T4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA63197.1}))

HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0
Identity = 404/700 (57.71%), Postives = 496/700 (70.86%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTLVTS-THVKGSQLMELNWKSEEVKLPFQNESVAGVKKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHEGISSAVSVCDKDPE---------APCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFV----PQIIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVR--STSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNLGG 674
            MVRFSCF++HV S KPKK+ QLS E M KAL+  S N+       SSG + + L+VQ D  L  S  +V  S  ++ +WKSEE++           + S ++K +SL SGLDQ+ R SGG+DSE ET  GFS +   +   S + V  KD E         A  S SL +SS    +ES+FS+ DP+Q +K  G ENS+T+  GE+AGE  +H   +  VI +S SLPN+++ +   +       + S EDL++L++++K++ V     Q++QD+E DD   ++EK + E PADD Y+ YNYVGSAKDWIIP  DE +     Q  +  HQWE +P KDFK KRI+ WV+ LQ CSP  E NE   ++H  +  A+VLD  + A+ D K+T GMEAAK+Y+SSLSATAT AQL+NHGLV+IPFLSAFVSL+ALNLSGNAIVRI AG+LPRGLH+LNLSKNNI+TIEGLRELTRLRVLDLSYNRI+RIGHGLASCS++KELYLAGNKISEV+GLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHL YFNRQSIK GTLKD+ADRSARLGI++HQIDR LRSE K  RKG+ GVAAHK  SSS   RRS     AV S K S+ +  R   +  +   N RP F   G+KLL  R DL++ RSRSEG L  
Sbjct:    1 MVRFSCFHSHVNSQKPKKTVQLSVEAMQKALQDCSQNRALKDFTNSSGLNPIHLKVQGDALLDNSDNNVTTSSSVDRDWKSEEIR---------SKQASRIKKCRSLESGLDQEGRFSGGNDSEEETDHGFSCDGFRDHNESVIPVGGKDSEICLPNPSQEALPSDSLPLSSDLVCNESIFSIGDPQQSEK--GRENSDTHCSGEFAGESGDHIPRSSPVIVRSSSLPNISSLARGSAPTYLAPHSRSSEDLHILDLRQKEMLVHEVGTQVMQDQERDDSASNNEKNNCENPADDCYNSYNYVGSAKDWIIPVMDEVNKVKNLQGESSAHQWEELPSKDFKFKRIEEWVTDLQHCSPLEETNEFDSNDHLVEGGASVLDNLTAARLDGKVTAGMEAAKKYISSLSATATTAQLANHGLVVIPFLSAFVSLRALNLSGNAIVRITAGSLPRGLHILNLSKNNIATIEGLRELTRLRVLDLSYNRIVRIGHGLASCSSLKELYLAGNKISEVDGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLAYFNRQSIKVGTLKDTADRSARLGIAAHQIDRGLRSEHKNLRKGS-GVAAHKTASSSIHGRRS----QAVVSPKQSRGRHGRLPPSGIKTTSNHRPHFYDFGSKLLGFRSDLSILRSRSEGTLAA 684    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B3K4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA63195.1}))

HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 397/695 (57.12%), Postives = 489/695 (70.36%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTLVTS-THVKGSQLMELNWKSEEVKLPFQNESVAGVKKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHEGISSAVSVCDKDPE---------APCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFV----PQIIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVRSTSTRDKINARPSFVGNKLLSLRPDLAMQRSRSEGNLG 673
            MVRFSCF++HV S KPKK+ QLS E M KAL+  S N+       SSG + + L+VQ D  L  S  +V  S  ++ +WKSEE++           + S ++K +SL SGLDQ+ R SGG+DSE ET  GFS +   +   S + V  KD E         A  S SL +SS    +ES+FS+ DP+Q +K  G ENS+T+  GE+AGE  +H   +  VI +S SLPN+++ +   +       + S EDL++L++++K++ V     Q++QD+E DD   ++EK + E PADD Y+ YNYVGSAKDWIIP  DE +     Q  +  HQWE +P KDFK KRI+ WV+ LQ CSP  E NE   ++H  +  A+VLD  + A+ D K+T GMEAAK+Y+SSLSATAT AQL+NHGLV+IPFLSAFVSL+ALNLSGNAIVRI AG+LPRGLH+LNLSKNNI+TIEGLRELTRLRVLDLSYNRI+RIGHGLASCS++KELYLAGNKISEV+GLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHL Y NRQ IK GT KD+ADRSARLG ++HQIDR LRSE KT +KG+HGVAAHK  SSS   R S     AV S K S  +  R     +  +    F G+KLLS R DL ++RSRSE  L 
Sbjct:    1 MVRFSCFHSHVNSQKPKKTVQLSVEAMQKALQDCSQNRALKDFTNSSGLNPIHLKVQGDALLDNSDNNVTTSSSVDRDWKSEEIR---------SKQASRIKKCRSLESGLDQEGRFSGGNDSEEETDHGFSCDGFRDHNESVIPVGGKDSEICLPNPSQEALPSDSLPLSSDLVCNESIFSIGDPQQSEK--GRENSDTHCSGEFAGESGDHIPRSSPVIVRSSSLPNISSLARGSAPTYLAPHSRSSEDLHILDLRQKEMLVHEVGTQVMQDQERDDSASNNEKNNCENPADDCYNSYNYVGSAKDWIIPVMDEVNKVKNLQGESSAHQWEELPSKDFKFKRIEEWVTDLQHCSPLEETNEFDSNDHLVEGGASVLDNLTAARLDGKVTAGMEAAKKYISSLSATATTAQLANHGLVVIPFLSAFVSLRALNLSGNAIVRITAGSLPRGLHILNLSKNNIATIEGLRELTRLRVLDLSYNRIVRIGHGLASCSSLKELYLAGNKISEVDGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLAYLNRQPIKVGTFKDTADRSARLGFTAHQIDRGLRSEHKTLQKGSHGVAAHKVSSSSIHGRIS----QAVVSPKQSSGRHGRLPPRTNHGHHFYDF-GSKLLSFRSDLFIRRSRSEETLA 679    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A2S8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524514.1}))

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 401/701 (57.20%), Postives = 493/701 (70.33%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTLVTS-THVKGSQLMELNWKSEEVKLPFQNE-SVAGVKKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSE--RSHEGISSAVSVCDKDPE---------APCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFV----PQIIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQ--VRSTSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNL 672
            MVRFSCF+  V S KPKK+ QLS E M+KAL+  S  +       SSG + + L+VQ D  L  S  +V  S  ++  WKSEE+   +  E  +   K S ++K +SLGSGLDQ+ R SGG+DS++ET Q FS +  R H G+   + V  KDPE         A  S SL VSS   N+ES+ S+ DPR+ +K  G ENS+T++FGE A E  +    T  VI +S SLPN+ + +G  ++     R+ S +DL++L++ +K++ V     Q++QD+  DD    +EK + E PADDGY+ YNYVGSAKDWI+P   E +     Q  +  H+ E +  KDFK KRI+ WV  LQ CSP  E NES  ++HQ    A+VLD    A+ D K+TPGMEAAK+Y+SSLSAT+T AQL+NHGLV+IPFLSAFV+L+ LNLSGNAIVRI AGALPRGLH+LNLSKNNISTIEGLRELTRLRVLDLSYNRI+RIGHGLASCSA+KELYLAGNKISEV+GLHRLLKLNVLDLRFNK ST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHL YFNR+SIKAGTLKD+ADR ARLGI++HQIDR  RSE K  RKG+ GVA HK  S+S   RR+      VAS K S+ +   +  + T+   N R  F   G+KLLSLR DL++ RSRS G L
Sbjct:    1 MVRFSCFHPQVNSNKPKKTVQLSVEAMHKALQDCSQKRALKDSTSSSGLNPIDLKVQGDALLDKSDNNVTSSSSVDHVWKSEEINSKYNIEIDIVAPKASRIKKCRSLGSGLDQEGRFSGGNDSDDETEQAFSCDGFRYHNGL--VIPVGGKDPEVCLPNQYQGALPSDSLPVSSDLVNNESILSIGDPRRSEK-GGRENSDTHFFGECASESGDRMPHTSPVIVRSNSLPNIGSLAGCSALTYLAPRSRSSDDLHILDLSQKELLVHEVGAQVMQDQGRDDSASHNEKNNCENPADDGYNSYNYVGSAKDWIMPVMYEVNTVKDLQGESSAHRCEELSSKDFKFKRIEEWVIDLQHCSPLEETNESDSNDHQVQGGASVLDNMIAARLDGKVTPGMEAAKKYISSLSATSTTAQLANHGLVVIPFLSAFVNLRVLNLSGNAIVRITAGALPRGLHILNLSKNNISTIEGLRELTRLRVLDLSYNRIVRIGHGLASCSALKELYLAGNKISEVDGLHRLLKLNVLDLRFNKFSTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLAYFNRKSIKAGTLKDAADRPARLGIAAHQIDRGHRSEHKNLRKGS-GVATHKIASASIHGRRN----QVVASPKQSRGRHGCLPPSGTKTTTNHRHHFDDFGSKLLSLRSDLSIPRSRSAGTL 693    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A895 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8526454.1}))

HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0
Identity = 398/700 (56.86%), Postives = 491/700 (70.14%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTL-VTSTHVKGSQLMELNWKSEEVKLPFQNESVAGVKKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHE--------GISSAVSVCDKDPEAPCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFV----PQIIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSN-HQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVR--STSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNLGG 674
            MVRFSCF+A V SPKPKK+ QLS E M K L+  S N        SSG +   L+VQ D  L   + +V  S  ++  WK E++   +  ES   V ++ ++KS+SLGSGLDQ+ R SG +D E+ETVQ F  + SH+        G +  +S+  +  EA  S S  VSS   N+ES+F + DP+  +K+   +NS++++ GE AGE S+  + TP VI +S SLPN+++F G+ +      R+ S EDL+++ +++K++ V     Q+IQD E DD V ++EK   E  ADD YD YNYVGSAKDWIIPA DE +   T Q  +  HQW+ +  KDFKIKRI+ WV  LQ CSP  E NE + SN HQ     +V D  + AK D K+TPGMEAAK+Y+SSLSATAT AQL+NHGLV+IPFLSAFVSL+ALNLSGN I RI AGALPRGLH+LNLSKN IS IEGLRELTRLRVLDLSYNRI+RIGHGLASCS++KELYLAGNKISEV+GLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPH+ YFNRQSIK GT KD+ADRSARLG ++HQ+D  LRSE KT RK +HGVAA+K  SSS   R+S      V S K S+    R   + T+   N R  F    +K+LS + DL ++RSRSEG L  
Sbjct:    1 MVRFSCFHAQVNSPKPKKTVQLSVEAMQKELQDCSQNHALKDFTNSSGLNPKYLKVQSDAFLDNINNNVTSSSSVDCGWKLEDINSKYNVESDIRVSETSIKKSRSLGSGLDQEGRFSGPNDWEDETVQEFFCDGSHDHDGLVPVNGKNPEISLPGQYQEALPSDSHPVSSDLVNNESIFLIGDPQHSEKDH--KNSDSHFSGECAGESSHPLTCTPPVIVRSSSLPNISSFGGRSAPAYLAPRSRSSEDLHIVYIRQKEMSVHVVGTQVIQDHERDDSVSNNEKNIYENRADDSYDSYNYVGSAKDWIIPAMDEVNTVKTLQGKSSAHQWKELSSKDFKIKRIEEWVIDLQHCSPLEETNELSDSNDHQVHRGNSVSDNLTAAKLDGKVTPGMEAAKKYISSLSATATTAQLANHGLVVIPFLSAFVSLRALNLSGNTIGRITAGALPRGLHILNLSKNKISAIEGLRELTRLRVLDLSYNRIVRIGHGLASCSSLKELYLAGNKISEVDGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHMAYFNRQSIKVGTFKDAADRSARLGFTAHQLDHGLRSEHKTLRKESHGVAANKTSSSSIHGRKS----QPVVSPKRSRGGHGRLPPSGTKTTTNQRHRFYNFSSKILSFKSDLFIRRSRSEGTLAA 694    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QTK1 ((Protein phosphatase 1 regulatory subunit pprA like {ECO:0000313|EMBL:PSS14440.1}))

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 390/704 (55.40%), Postives = 475/704 (67.47%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTLVTST-HVKGSQLMELNWKSEEVKLPFQNESVAGVKKSC-MRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHEGISSAVSVCDKDPE---------APCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAASYEDLNVLNVKEKKVFVPQI----IQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGENESAFSN---HQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQ-SSSTQSRRSPHSQHAVASQK-PSKDKQVRSTSTRDKINA---RPSF--VGNKLLSLRPDLAMQRSRSEGNL 672
            M RFSCFNAH++S KPKK+ Q+S E M K LE  S  Q       SS  + L L+VQ     + S  HV  S  +   WKS E+   +  ES   V  +  ++KS SLGSGLD++ R+S G+DSE+ET  G+S + SH+   + V V  +DPE         A  S SL V+S   N++S+FS+ D +Q +KE   ENS+ +   E A +  +++   P VI KS SLPNL++   + ++     ++ S EDL VL+ ++ ++ + ++    I   E  D +  +EK + E P +DGYD YN VGSAK WI+P TDE +A+          QWE  P KD K+KRI+ WV   Q C P  E     SN   HQ     AV+D  ++A+ D++ TPGMEAAK+Y+SSLSA +T AQL+NHGLV+IPFLSAFVSL+ALNLSGNAIVRI AGALPRGLH LNLSKN ISTIEGLRELTRLRVLDLSYNRI RIGHGLASCS++KELYLAGNKISEVEGLHRLLKLNVLDLRFNKIST K LGQLA+NYNS+QAISLEGNPAQKNVGDEQLKKYLQGLLP L YFNRQSIKAG L D ADRSARLGI++   DR  RSE KT RKG+HG +AHK   SSS   RRSP    A+ASQK PSK K      T  K  A   R +F    +KLLS RPDL+M+RSRSEG L
Sbjct:    1 MFRFSCFNAHIHSNKPKKTVQMSVEAMKKTLEDCSQTQALKDFETSSSLNSLDLKVQGGAIPINSAGHVISSSSVHRGWKSVEINSDYIIESDREVSHAGHIKKSLSLGSGLDREGRVSVGNDSEDETDIGYSCDGSHDYKETVVPVGGRDPEISVTINYKEALLSDSLHVASDLVNNDSIFSIGDTQQSEKE-AHENSDVHVSSEGARDSGDYTPRNPTVIVKSNSLPNLDSAGERSALTYLASQSRSSEDLTVLDSRQTEMVIHEVGTGVIPVGERGDRILHNEKSNCESPPEDGYDSYNCVGSAKYWIVPITDEVNAEEHLHREASARQWEEFPGKDLKMKRIEEWVIDQQHCGPLDETNDGLSNIDDHQVRRRTAVMDNVTSARFDARATPGMEAAKKYISSLSAASTTAQLANHGLVVIPFLSAFVSLRALNLSGNAIVRITAGALPRGLHNLNLSKNKISTIEGLRELTRLRVLDLSYNRIFRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTAKGLGQLAANYNSVQAISLEGNPAQKNVGDEQLKKYLQGLLPLLAYFNRQSIKAGPLMDVADRSARLGITA---DRGHRSEHKTLRKGSHGASAHKTSFSSSIHGRRSP----ALASQKPPSKGKPGHLPPTGIKTAATTHRHNFHDFSSKLLSFRPDLSMRRSRSEGTL 696    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4V3WQA6 ((Uncharacterized protein {ECO:0000313|EMBL:THG19537.1}))

HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 386/689 (56.02%), Postives = 468/689 (67.92%), Query Frame = 0
 
Query:   17 KKSAQLSAEVMNKALEQHSDNQ-------SSGSSQLPLEVQEDNTLVTST-HVKGSQLMELNWKSEEVKLPFQNESVAGVKKSC-MRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHEGISSAVSVCDKDPE---------APCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMR-RAASYEDLNVLNVKEKKVFVPQI----IQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGENESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQ--HAVASQKPS---KDKQVRSTSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNLGGA 675
            +K+ QLS EV  K L   S NQ       SSG + L L+V++D     S+ HV  S   E  WKSEE    +  ES  G+  S  ++KS SLG GLD++ R S G+DSE+ET  G+S +R H      V V  KDPE         AP   SL  S+   N ES+FS+ D  Q +KE G ENSNT++ GE A E S+H+  TP +I KS S+PN+ + SG+LS +K +   + S EDL VL ++ K++ + ++    I D+E +D   ++ K + E  A DG+D  NYVGS+KDWIIP  DE +A+      +   + EG P  DFKIKRI+ WV  LQ C P  E+    SN  +  V         A+ D+K+TPGMEAAK+Y+SSL+AT+T AQL+NHGL +IPFLSAFVSLKALNLSGN IVRI AGALPRGLH LNLSKN+ISTIEGLRELTRLRVLDLSYNRI+RIGHGLASCS++KELYLAGNKISEVEGLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHL YFNRQSIKAGTLKD+ADR ARLGI++   DR LR E K++RKGNHG + HK   SS     S H Q   A  S KPS   +  ++  T T+     R +F   G+KLL+ R DLAM+RSRSEG L  A
Sbjct:    4 QKTVQLSVEVQ-KTLADRSQNQALKDFRDSSGLNSLHLKVEKDAIPNNSSNHVMASSSTERGWKSEEFNSSYDIESDRGIYHSGRIKKSLSLGCGLDREGRASVGNDSEDETDTGYSRDRPHNQDRMVVPVGRKDPEISLANLYQEAPHYDSLQASTDLVNTESIFSIGDTLQSEKE-GHENSNTHFSGECADESSDHTPRTPPIIVKSNSMPNIGS-SGELSALKYLEPHSKSCEDLTVLELRWKEMVIHEVGTGVIHDQERNDTALNNGKSNCENNAGDGFDPCNYVGSSKDWIIPVMDEANAEKHLHGESSARRREGFPSNDFKIKRIEDWVIDLQHCGPLEESNDGLSNVDDHQV------QRAARFDAKVTPGMEAAKKYISSLTATSTTAQLANHGLAVIPFLSAFVSLKALNLSGNNIVRIAAGALPRGLHSLNLSKNSISTIEGLRELTRLRVLDLSYNRIVRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLAYFNRQSIKAGTLKDAADRPARLGITA---DRGLRLEHKSSRKGNHGTSVHKTSFSS-----SIHGQKGQATVSPKPSRVGRPGRLPPTGTKTGTAHRNNFYDFGSKLLNFRHDLAMRRSRSEGTLAAA 675    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9GFC1 ((Uncharacterized protein {ECO:0000313|EMBL:SPC98292.1}))

HSP 1 Score: 659.062 bits (1699), Expect = 0.000e+0
Identity = 382/704 (54.26%), Postives = 478/704 (67.90%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQSSGSSQLP-------LEVQEDNTLVTSTHVKGSQLMELNWKSEEVKLPFQNESVAGV-KKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHE-------GISS--AVSVCDKDPEAPCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSGQLSIIKTMRRAA----SYEDLNVLNVKEKKVFVPQ----IIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDK--QVRSTSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNLGG 674
            MVRFSCFNAH++  KPKK+ Q SAE + K  +    +Q+S  S  P       L++Q D  + ++ HV     ++ + KSE+++  F  E   GV ++  ++KS+SLGS L Q+ R+S  + +E+ET  GF    SH+       G S    VS  D+  E+P      +SS   N+ES+FS+ DP   +KE G ENS+T   GE AG++ + +   P +I KSCSLPN+ A +         R  A    S+E+L++L  ++K+ F+ +    +++++  +DD    EK   E   DDG D YNY G AKDWI+PATDE +     Q  + +H W+ +P KDFKIKRI+ WV+ LQ CSP  E NES  S++Q +  + +L+  +  K D K+TPGMEAAK+Y+SSLSA  T AQL+NHGLV+IPFLSAFVSLK LNLSGNAIVRI AGALPRGLHMLNLSKNNI TIEGLRELTRLRVLDLSYNRI RIGHGLASCS++KELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLA+NYNSLQAISLEGN AQKNVGDEQLKKYLQGLLPHLTYFNR  IKA TLKD+ADRS RLGISSHQ DR LRS+ K TRK   G+A+H+  SSST  R+      AV S K SK +   +    T+   + R       +KL +  PDL+M+RSRSEG LG 
Sbjct:    1 MVRFSCFNAHIHCHKPKKAVQPSAEALYKTSQDCFQSQASRESPNPTSLNPSSLKMQGDPQIESTNHVMNLSSVDSDLKSEDMRRKFVIEGEIGVNQRGNLKKSRSLGSRLFQEGRMSENA-TEDETDLGFMCGGSHDQKALVVPGPSKDRGVSPSDRYQESPSLEPFQLSSDIVNNESIFSIGDPPHSEKE-GHENSDTPLSGECAGDFGDCTPCIPPLIEKSCSLPNIGASTPTSVKCSPFRHLALQSRSFEELHILERRQKERFIHESERRVMREQVRNDD--KAEKNHFENSVDDGCDLYNYSGLAKDWIMPATDEVNPVKNFQGESSVHHWDEVPSKDFKIKRIEEWVNDLQICSPLEETNESTQSDYQVNRDSNILNSLTAPKVDGKVTPGMEAAKKYISSLSAMTTTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHMLNLSKNNIPTIEGLRELTRLRVLDLSYNRIFRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLAANYNSLQAISLEGNSAQKNVGDEQLKKYLQGLLPHLTYFNRLPIKASTLKDAADRSVRLGISSHQFDRGLRSDHKATRKV--GLASHRPSSSSTHGRKG----QAVVSPKRSKSRLGLLPPMGTKATTHNRQHHFDFSSKLPNFGPDLSMRRSRSEGTLGA 694    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6R9T4 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8075805.1}))

HSP 1 Score: 657.907 bits (1696), Expect = 0.000e+0
Identity = 378/704 (53.69%), Postives = 482/704 (68.47%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQSS-------GSSQLPLEVQEDNTLVTSTHVKGSQLMELNWKSEEVKLPFQNESVAGV-KKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSE--RSHEGIS-------SAVSVCDKDPEAPCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNA---FSGQLSIIKTMR-RAASYEDLNVLNVKEKKVFVP----QIIQDREGDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSE-LKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVRSTSTRDKINARPSFV--GNKLLSLRPDLAMQRSRSEGNLGGA 675
            MVRFSCFNA ++  KPKK+ Q S E M K  +  S +Q+S       G   L L+ Q D  +    H + +  +E   KS ++K  F  ES  GV ++  ++KSQSLGSGL Q+ R+S G+D+E+ET    S E    H+G++         +S  D+  E P   S  +S    N ES+FS+ DP+  +KE G ENS+T   G+  G+  +H+  TP +I KSCSLPN+ A    SG+ S  + +  ++ S+EDL++L+ + +++ V     Q  Q++  +D  +  EK S +   D GYD Y+Y G AKDWI+PATDE +     +  + +H W+ +P KDFKIK I+ WV+ LQ CSP  E NES+ S+ Q      +L+  +TAK D KITPGMEAAK Y+SSLSA AT AQL+NHGLV+IPFLSAF SL+ LNLSGNAIV+I AGALPRGLH+LNLSKNNI+TIEGLRELTRLR+LDLSYNR++RIGHGLASCS++KELYLAGNKISEVEGLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHL YFNR  IKA TLKD ADRS RLGISSHQ+DR +RS+  KT RK +H +AA  + SSST  R+S  +  +    K S+   +    T+   + R  +   G KL +LRPDL+++RS+SEG LG A
Sbjct:    1 MVRFSCFNAPIHIHKPKKTVQPSVEKMYKTSQDISLSQASKDLPNHTGLDSLLLKAQGDTQI--DKHFRSASSVENGLKSGDMKSKFSVESNIGVNQRGYLKKSQSLGSGLFQEGRVSAGNDTEDETDMELSCEGFHDHKGLAEPGPSKDQVLSPPDEYQENPNLESFRLSPDNVNYESIFSIGDPQHSEKE-GRENSDTPLSGKCPGDSGDHTPHTPPLIVKSCSLPNIGASTPTSGRCSPFRHVALQSRSFEDLHILDTRRREIPVHESERQATQEQVKNDGSDKAEKNSFKNSVDYGYDSYSYSGLAKDWIVPATDEVNPVKNLRGESSVHSWDELPSKDFKIKWIEEWVNDLQLCSPLEETNESSQSDDQVKRNPNILNSMTTAKIDGKITPGMEAAK-YISSLSAIATTAQLANHGLVVIPFLSAFASLRVLNLSGNAIVKITAGALPRGLHILNLSKNNIATIEGLRELTRLRILDLSYNRVLRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLVYFNRLPIKASTLKDGADRSVRLGISSHQLDRVVRSDHHKTARKASHSLAAAHKPSSSTHGRKS-QAAFSPKRSKGSRHGVLPPVGTKSTTHNRHHYFDSGTKLPNLRPDLSIRRSQSEGTLGAA 699    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1VB60 ((Dynein assembly factor 1, axonemal {ECO:0000313|EMBL:KAB1210082.1}))

HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0
Identity = 373/703 (53.06%), Postives = 476/703 (67.71%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQSSGSS-------QLPLEVQEDNTLVTSTHVKGSQLMELNWKSEEVKLPFQNESVAGVK-KSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSE--RSHEGIS-------SAVSVCDKDPEAPCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNA---FSGQLSIIKTMR-RAASYEDLNVLNVKEKKVFVPQIIQDREGDDDVED-----DEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGE-NESAFSNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQ--VRSTSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNL 672
            MVRF CF+ H++ PKPKK+ + S E M K+ +  S NQ+S  S          L+ Q DN +  +  V     +E   KS ++K  F  E   GV  +  ++KSQSLGS L Q+ R+  G+D+E+ET   FS E  R H+G++         +S  ++D + P   S  ++S  AN+ES+FS+ DP   +KE G E  +T   G++  +  + +  +P ++ KSCSLPN+ A    SG+ S ++ ++ ++ S EDL+VL+++ +++ V +  + RE    ++D      E  + E   DDGYD +NY G AKDWI+P  +E       Q  T  HQW+ M  KDFKIKRI+ WV+ LQ CSP  E NE + S  Q      +L  S+ AK D K+ PGME AK+Y+SSLSATAT A L+NHGLVMIPFLSA  +L+ LNLSGNAIVRI AGALPRGLHMLNLS+NNISTIEGLRELTRLRVLDLSYNRI +IGHGLASCS++KELYLAGNKISEVEGLHRLLKLNVLDLRFNKIST KCLGQLA+NYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLP+LTYFNR  IKA T KD+ADRS RLGISSHQ+DR +RS+ K TRK +HG+AAHK  SSST  RRS     A+ S K SK +   +    T+   + + ++    +KLL+ RPDL++ RSRSEG L
Sbjct:    1 MVRFLCFSTHIHCPKPKKTVKPSVEEMYKSSQDFSRNQASKDSPNCTSLNAFILKTQGDNQI--NGRVTSMSSVESGRKSGDIKSKFTVEGDFGVNCRGHLKKSQSLGSQLFQEGRMCAGNDTEDETDPRFSCEGSREHKGLAEPSPSKDQGISSPEQDNKIPTLESFQINSDVANNESIFSIGDPPYSEKE-GHEICDTPLSGQFPCDSGDRTPRSPPLVVKSCSLPNIGASMPTSGRCSPLRCLQLQSRSSEDLHVLDMRRREISVHES-ERRETRGQIKDYGFDKAENTTFEHSVDDGYDSHNYSGLAKDWIVPVMEEVSPAKNVQGETSAHQWDEMRSKDFKIKRIEEWVNDLQLCSPMEETNELSESGDQLKRDPNILKSSTGAKGDGKVAPGMETAKKYISSLSATATTAHLANHGLVMIPFLSAHANLRVLNLSGNAIVRITAGALPRGLHMLNLSRNNISTIEGLRELTRLRVLDLSYNRIFKIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTAKCLGQLAANYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPYLTYFNRLPIKANTFKDAADRSVRLGISSHQLDRGMRSDHKATRKVSHGIAAHKPSSSSTHGRRS----QALVSPKRSKGRHGLLPPMGTKATSHNQHNYFDFSSKLLNFRPDLSIPRSRSEGTL 695    
BLAST of DCAR_021206 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2P5D0Y4 ((LRR domain containing protein {ECO:0000313|EMBL:PON66943.1}))

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 376/694 (54.18%), Postives = 473/694 (68.16%), Query Frame = 0
 
Query:    1 MVRFSCFNAHVYSPKPKKSAQLSAEVMNKALEQHSDNQSS---GSSQLPLEVQEDNTLVTSTHVKGSQLMELNWKSEEVKLPFQNES-VAGVKKSCMRKSQSLGSGLDQKRRLSGGSDSENETVQGFSSERSHE----GISSAVSVCDKDPEAPCSTSLLVSSGRANDESVFSVEDPRQFDKEDGLENSNTNYFGEYAGEYSNHSSETPRVISKSCSLPNLNAFSG-QLSIIKTMRRAASYEDLNVLNVKEKKVFVPQIIQDRE----GDDDVEDDEKPSMEIPADDGYDEYNYVGSAKDWIIPATDENDAKITHQENTEIHQWEGMPDKDFKIKRIDVWVSALQDCSPKGENESAF--SNHQEDDVAAVLDGSSTAKHDSKITPGMEAAKRYVSSLSATATAAQLSNHGLVMIPFLSAFVSLKALNLSGNAIVRINAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIIRIGHGLASCSAIKELYLAGNKISEVEGLHRLLKLNVLDLRFNKISTTKCLGQLASNYNSLQAISLEGNPAQKNVGDEQLKKYLQGLLPHLTYFNRQSIKAGTLKDSADRSARLGISSHQIDRSLRSELKTTRKGNHGVAAHKRQSSSTQSRRSPHSQHAVASQKPSKDKQVR---STSTRDKINARPSF--VGNKLLSLRPDLAMQRSRSEGNLGG 674
            MVRFSCFNAHV+S KPKK+ Q S E  +K L+  S ++ S    +   PL +        ++ +K        WKSE++K  F  E  + G +   ++KSQSL SGL ++  +S G+  E+ET  G S + S E         V+  D+  +AP   +  VS   AN+ES+FS+EDP Q +KE G ENS T      +GE S+H+  TP    KS S PNL+A S    S      R+ S EDL+VL+++ K + +  + +  E    GDD++   EK + E   DD YD  NY G AKDWI+P  D+ D+  + Q  + +HQW+ +P++DFKIKRI+ WVS LQ CSP  E    F  ++H + D  ++L+G +  K + K++PGMEAAKRY+SSLSA AT AQL+NHGLV+IPFLSAFVSL+ LNLSGNAIVRI AGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRI RIGHGLASCS++KELYLAGN+ISEVEGLHRLLKL VLDLRFNKIST KCLGQLA+NY+SLQAISLEGNPAQKNVGD+QLKK+LQGLLPHL YFNRQ IKA TLKDSA+RS RLGISS+Q DR LR + K TRKG+  + A +  SSS   R    SQ A  S K S+ ++ R   S  T+   ++R  +   G+KLL+ +PDL+M+RSRSEG LG 
Sbjct:    1 MVRFSCFNAHVHSHKPKKTIQPSVEAFHKTLQDCSHSRFSEVFPNKTSPLLLNSQGHAQVTSDIKHVSSSVRGWKSEDLKNKFIIEGELLGPRIGHLKKSQSLESGLCREGMVSAGNGIEDETDLGLSCDGSREVRDGSKDQEVTSPDQYQKAPTLDTFQVSCDIANNESIFSIEDPPQTEKE-GHENSVT----PLSGECSDHAPNTPHGFVKSRSSPNLSACSPISASRAHLCSRSRSSEDLHVLDMRWKDISIHDVEKHSEQGQVGDDNINKAEKCTFENYVDDNYDSCNYSGLAKDWIMPVIDKIDSVKSLQGESSLHQWDELPNRDFKIKRIEEWVSDLQHCSPLEETNECFQSNDHMKRD-PSILNGFAAEKVEDKVSPGMEAAKRYISSLSAAATTAQLANHGLVLIPFLSAFVSLRVLNLSGNAIVRITAGALPRGLHMLNLSKNNISTIEGLRELTRLRVLDLSYNRIFRIGHGLASCSSLKELYLAGNRISEVEGLHRLLKLTVLDLRFNKISTAKCLGQLAANYSSLQAISLEGNPAQKNVGDDQLKKHLQGLLPHLAYFNRQPIKASTLKDSAERSVRLGISSNQFDRGLRPDHKATRKGS-VLTAQRPVSSSAHGRG---SQAAGVSPKRSRGRRGRLPPSGGTKATTHSRHHYFDFGSKLLNFKPDLSMRRSRSEGTLGA 684    
Match NameStatsDescription
A0A5B7B2T4E-Value: 0.000e+0, PID: 57.71(Uncharacterized protein {ECO:0000313|EMBL:MPA6319... [more]
A0A5B7B3K4E-Value: 0.000e+0, PID: 57.12(Uncharacterized protein {ECO:0000313|EMBL:MPA6319... [more]
A0A5J5A2S8E-Value: 0.000e+0, PID: 57.20(Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more]
A0A5J5A895E-Value: 0.000e+0, PID: 56.86(Uncharacterized protein {ECO:0000313|EMBL:KAA8526... [more]
A0A2R6QTK1E-Value: 0.000e+0, PID: 55.40(Protein phosphatase 1 regulatory subunit pprA lik... [more]
A0A4V3WQA6E-Value: 0.000e+0, PID: 56.02(Uncharacterized protein {ECO:0000313|EMBL:THG1953... [more]
A0A2N9GFC1E-Value: 0.000e+0, PID: 54.26(Uncharacterized protein {ECO:0000313|EMBL:SPC9829... [more]
A0A5N6R9T4E-Value: 0.000e+0, PID: 53.69(Uncharacterized protein {ECO:0000313|EMBL:KAE8075... [more]
A0A6A1VB60E-Value: 0.000e+0, PID: 53.06(Dynein assembly factor 1, axonemal {ECO:0000313|E... [more]
A0A2P5D0Y4E-Value: 0.000e+0, PID: 54.18(LRR domain containing protein {ECO:0000313|EMBL:P... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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