MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLL
KVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTM
SEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFS
TAGSGFASVVVGSFARNMVIALSDSYGGKTNDSSNVASSSVPRWVEVLCD
DKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRE
TLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRLSRRRIKQKLDGE
EPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETV
RSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLS
LCLHILNGPWILVPT*
| Relationships |
|---|
| The polypeptide, DCAR_021461, derives from mRNA, DCAR_021461. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7A875 ((Uncharacterized protein {ECO:0000313|EMBL:MPA52847.1}))
HSP 1 Score: 482.256 bits (1240), Expect = 3.131e-167
Identity = 254/429 (59.21%), Postives = 328/429 (76.46%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIAL-SDSYGGKTNDSSN--------VASSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRL------SRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
M L+++ KGLDY+R+R+KW L+AALGFSGYG YRVY+ PSVVK+R+RLLK+LGA S+AE V+DSAE IG+VSKDF EF++SD+DQ+PNSLRQVSK+T SEEF+ V + A+ VGI+RGY+ E A+N + + NS SDQV DKLFSTAGSGFASVVVGSFARN+V+A+ SD + +D +N S SVP WV VLC +K R + D IQLFVSTAVA YL+KTMDINTYDE+F+G+TNPKHE ++RE LA++CNGA+ET V+TSHQVLT+ N N N+ S + L S + + +GEEP ++ + DE+++SGWV+KM STLAVPSNRRFVLD+TGRVTFETVRS ++F+LEKLSD ++ +L+ +E ++ + +E RYV+AKSS I TICLS+CLHIL G W+LVP
Sbjct: 1 MVLQLINKGLDYTRKRKKWVLLLAALGFSGYGVYRVYHSPSVVKKRKRLLKLLGALFSIAELVSDSAEMIGVVSKDFKEFLQSDTDQIPNSLRQVSKITRSEEFSESVIRVTTALTVGIMRGYRLE-ARNNDEMSANSGFSDQVLDKLFSTAGSGFASVVVGSFARNLVMAICSDGQCSRRSDVNNSTSVDHNVTESHSVPEWVNVLCGEKCREFMGDCIQLFVSTAVAVYLDKTMDINTYDEVFSGLTNPKHESKMREMLASLCNGAIETLVKTSHQVLTSTNSNVNNSSSSSSYLAIDHFQSPTTLNEDFNGEEPSSTELIARKSFDENEDSGWVSKMSSTLAVPSNRRFVLDVTGRVTFETVRSFMEFLLEKLSDGLKRSLDVVHEVIVDRALEVVRYVTAKSSVIATICLSMCLHILGGGWVLVP 428
Match: A0A2P6RP94 ((Uncharacterized protein {ECO:0000313|EMBL:PRQ48245.1}))
HSP 1 Score: 474.937 bits (1221), Expect = 1.006e-164
Identity = 234/426 (54.93%), Postives = 309/426 (72.54%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSE---QAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIA-LSDSYGGKTNDSSNVAS--------SSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
MDL + +KG DY+R+R+KW F++AALGFSGYGAYRVY LPSV ++R+RLLK+LGA SVAE V+DSAE+IG+VSKD EF++SDSD++PNSL+QVSK+ S+EF+ V + +A+ +G+LRGYQ++ Q+ + NS DQV DKLF+ AGSGF SV+VGSFA+N+V+A SD G ++S++ S + VPRWV+V C++K R+LIAD IQLFVSTAVA YL+KTMDINTYD++F+G+TNPKHE +V++ + ++CNGAVET VR+SHQVLT++ N N P S + + D +ESGW+ ++ STLAVPSNRRFVLD+TGRVT ETVRS LDF+LE+L D +R +N A E + +GVE RY AKSS I TICLSLCLHI++ PW+L P
Sbjct: 1 MDLELAKKGFDYARKRKKWLFVMAALGFSGYGAYRVYYLPSVCQKRKRLLKLLGALVSVAEVVSDSAESIGVVSKDLKEFLQSDSDEIPNSLKQVSKIARSDEFSGSVVKVTQAVTLGVLRGYQAQTKSQSHGGDGVSSNSGFMDQVMDKLFTKAGSGFTSVIVGSFAKNLVLAFFSDEQSGGGSNSNSFPSKDQFGMKMNDVPRWVDVACNEKCRDLIADCIQLFVSTAVAVYLDKTMDINTYDDIFSGLTNPKHEVKVKDMMLSVCNGAVETLVRSSHQVLTSSKSNVN---------------------HPNLSSGSQLAIGDGRKESGWIGQVSSTLAVPSNRRFVLDLTGRVTSETVRSSLDFLLERLFDGMRKRVNSARVETVDRGVEVVRYAVAKSSVIATICLSLCLHIIDSPWLLAP 405
Match: A0A2R6R5E2 ((Protein PHLOEM PROTEIN 2-LIKE like {ECO:0000313|EMBL:PSS21212.1}))
HSP 1 Score: 471.855 bits (1213), Expect = 2.177e-163
Identity = 240/423 (56.74%), Postives = 306/423 (72.34%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIA---------LSDSYGGKTNDSSNVASSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
MDL +V+KG Y+++RR+W L+AALGFSGYG Y+V++LP VVK+RE+LLK+LGA S+AEAV ++AE IG+VS+D EFVKSDSDQ+PNSLRQVSK+T S+EF+ V + RA+ GIL GY+SE K +D+SS+ DQV DKLFS +GSGFASVVVGSFARN+V+A + +S G DS S+P WV ++C +K + LI DSIQLFVSTAV+ YL KTM IN YDE+F+G+TNPKHER+V + L+ +CNGAVET VRTS+QVLT+ NS+S Q E L + DED GWVNKM STLAVPSNR+ VLD+TGRVTFETVRS L+F++EKL D +RS++N +E V+ +G+EA R+V+ KSS I T+C+SLCLHIL G WILVP
Sbjct: 1 MDLELVKKGFGYTQKRRRWVVLLAALGFSGYGVYKVHHLPCVVKKREKLLKILGALVSIAEAVFETAEVIGVVSRDIKEFVKSDSDQIPNSLRQVSKITRSDEFSDSVVRVTRALTFGILGGYRSEARK-----SDSSSILDQVLDKLFSKSGSGFASVVVGSFARNLVMAFYSEAKLSNMENSTGVNCRDSE---MKSIPEWVNIICGEKCKELIGDSIQLFVSTAVSVYLNKTMHINLYDEIFSGLTNPKHERKVADMLSLVCNGAVETLVRTSNQVLTSDKSKVNSNSSHPYLAIDEFESQGTGNVELLGQGLEARKSFDED--GGWVNKMSSTLAVPSNRKLVLDVTGRVTFETVRSFLEFLVEKLRDGLRSSINVVHEVVVDRGLEAVRFVTEKSSAIFTLCISLCLHILGGVWILVP 413
Match: A0A834ZC94 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8404849.1}))
HSP 1 Score: 474.552 bits (1220), Expect = 9.034e-163
Identity = 239/419 (57.04%), Postives = 316/419 (75.42%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIAL----SDSYGGKTNDSSNVA-----SSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRLSRRRIKQKLDG--EEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNG 408
M+L++V+KGLD+SRRR+KW L+AA GF+GYGAY+VY LPSVVK+R RLL +LGA S+AE V+DSAE IG+VSKD EF++SDSDQ+P SL+Q+SK+ SEEF+ + + +A+ VG+LRG +SE + ++ +SS SD + DKLFSTAGSGFASVVVGSFARN+V+A S G + N+S +V S VP WV V+C DK R LIAD+IQ+FVSTAVA YL+KTM+INTYDELF+GMTNPKHE +V++ L ++CNGAVET ++TSHQVLT +N DS ++ + I K + +E L ++ D ++SGWV+K+ ST+AVP NR+FVLD+TGRVTFETVRS L+F+L KLSD ++ +LN A+EEV+ +G+E RYVSAKSS I+TICL+LCLH+L G
Sbjct: 1 MELQLVKKGLDFSRRRKKWLLLLAAFGFTGYGAYKVYYLPSVVKKRRRLLNLLGALISIAEVVSDSAETIGVVSKDLKEFLQSDSDQIPTSLKQISKIARSEEFSESMIRVTQALTVGVLRGCRSE-TRTEDEAQTSSSFSDLITDKLFSTAGSGFASVVVGSFARNLVMAFYSDGQSSGGSQPNNSKSVTCLGSDSLPVPGWVNVVCRDKCRELIADTIQVFVSTAVAVYLDKTMNINTYDELFSGMTNPKHETKVKDILISVCNGAVETLIKTSHQVLTVSNSKLCLDSSSSVGQGKGSITTKDEAFEQESLSTELKAKGSFDGIKDSGWVDKVSSTMAVPRNRKFVLDVTGRVTFETVRSFLEFLLWKLSDGLKGSLNVAHEEVVERGLEVIRYVSAKSSVIITICLALCLHVLGG 418
Match: A0A6I9UDZ3 ((protein PHLOEM PROTEIN 2-LIKE A10 {ECO:0000313|RefSeq:XP_011099410.2}))
HSP 1 Score: 468.003 bits (1203), Expect = 8.373e-162
Identity = 236/419 (56.32%), Postives = 309/419 (73.75%), Query Frame = 0
Query: 3 LRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIALSDSY----GGKTNDSSNVASSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANSDSDMNLRLSRRRIKQKLDGEE---PLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
+ ++ K +D+++ ++KW ++ ALGF+GYGAYRVYNLPSVVK+R+RLLK+LGAF SVAE V+DSAE IGIVSKD EF+ SDSDQ+P SLRQ+SK+ S+EF+ V+ I RA+ VGILRGYQ E KN + SD+V DKLFS +GSGFASVVVGSFARN+V+AL + G ND N A V R VEV C+ K R LI D I+LFVSTAVA YL+KTM+INTYDE+F+G+TNPKHE +VR+ L ++C+GA+ET +RTSH V TT + A+ + K+D E+ +P+ F +L DE+QESGWV KM STL VPSNR+FVLDMTG VTFETVR L+F+L+KLS+ ++ +++ +EEV+ +GVEA RYVS +SS + ++CL+LCL+ILN PW+LVP
Sbjct: 1 MELLNKSVDFAKTKKKWVLVLGALGFTGYGAYRVYNLPSVVKKRQRLLKLLGAFISVAEMVSDSAEGIGIVSKDLKEFLGSDSDQIPQSLRQISKIARSDEFSESVTKITRALTVGILRGYQHEMMKNCTSLNGDPGFSDRVMDKLFSDSGSGFASVVVGSFARNLVMALYSEWQQDRGSGLNDLPN-ADQFVSRLVEVACEAKCRELIGDCIRLFVSTAVAVYLDKTMNINTYDEIFSGLTNPKHEAKVRDMLVSVCSGAIETLIRTSHHVWTTESAAAS---------KLKSTYSKIDDEDVFGVVPTTFRAKKLIDENQESGWVRKMSSTLTVPSNRKFVLDMTGTVTFETVRCFLEFLLQKLSECMKRSVDVVHEEVVDRGVEAMRYVSGRSSAVTSLCLTLCLNILNSPWVLVP 409
Match: A0A314UUN7 ((Protein PHLOEM PROTEIN 2-LIKE A10-like isoform X1 {ECO:0000313|EMBL:PQM41111.1}))
HSP 1 Score: 464.151 bits (1193), Expect = 8.384e-160
Identity = 242/447 (54.14%), Postives = 322/447 (72.04%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDS--ADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIAL-SD--SYGGKTNDSSNV-----ASSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTA----NP-NANSDSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSA------------------KSSTIVTICLSLCLHILNGPWILVP 414
MD ++ +KG DY+ +R+KW F+ AALGFSGYG YRVYNLPSV ++R+R+LK+LGA S+AE V+DSAE+IG+VSKD +F+KSDSD++PNSL+QVSK+T S+EF+ V + +A+ +G+LRGY+SE A+N GD+ + NSS +DQV DKLF+TAGSGF SVVVGSFARN+V+A SD S GG +N+S ++ ++SVP WV+V+CD K R+LI D IQLFVSTAVA YL+KT++INTYD++F+G+TNPKHE +VR+ L+++CNGAVET +RTSHQVL + NP N NS S + + S+ + + E+ L +DDE ++SGWV K+ STLAVPSNRRFVLD+TGRV ETVRS L+F EKL D ++ N EE + KG RY ++ KSS I T+ LSLCLHI++ PW LVP
Sbjct: 1 MDHQLAKKGFDYAGKRKKWLFVAAALGFSGYGVYRVYNLPSVSQKRKRILKLLGALVSIAEVVSDSAESIGVVSKDLRDFLKSDSDKIPNSLKQVSKITRSDEFSESVVKLTQAVTLGVLRGYRSE-ARNDGDNGISSNSSFTDQVMDKLFTTAGSGFVSVVVGSFARNLVLAFYSDEKSGGGYSNNSPSMDRFVSETNSVPTWVDVVCDKKCRDLIGDCIQLFVSTAVAVYLDKTVNINTYDDIFSGLTNPKHETKVRDMLSSVCNGAVETLIRTSHQVLANSTSKVNPSNLNSSSYLEIDESQTPARDEGFSEKALSMHSKATNVDDETKDSGWVGKVSSTLAVPSNRRFVLDVTGRVASETVRSFLEFSSEKLFDGMKGYANSVREETVDKGFGIVRYANSVREETVDKGFAIVRYAVGKSSVIATVWLSLCLHIMDSPWALVP 446
Match: W9SJV5 ((Uncharacterized protein {ECO:0000313|EMBL:EXC12625.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 2.217e-159
Identity = 234/436 (53.67%), Postives = 319/436 (73.17%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGD--SADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIALSDSYGGKTNDSSNVASSS-----------VPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLT--TANPN---ANSDSDMNL----RLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
M+L++V+KG+D++R+R+KW L+AALG +GYGAYRVY+LPSV ++R R+LK+LGA SVAEAV+DSAE IGIVS+D EF++SDSDQ+PNSL Q+SK+ S+EF++ + + +++ VGILRGYQS+ D S NSS ++++ DK+FS+AGSGFASVVVGSFARN+V+ + +T N +SS VP W+ V+ DK R+LI D IQ+FVSTAVA YL+KTM++NTYDELF+G+TNPKHE +VR+ L ++CNGAVET VRTSHQVLT T+ N NS S + ++ ++ ++L+ E P+ +E DD + GWV+K+ STLAVPSNRR VLD+TG+VTFETVRS L+F+LEKL D V+S +N +E V+ +G+ RYV+AKSS I TICLSLCLH+ + W+L+P
Sbjct: 1 MELQLVKKGIDFARKRKKWVVLLAALGVTGYGAYRVYHLPSVARKRRRILKLLGAIVSVAEAVSDSAETIGIVSRDLKEFLQSDSDQLPNSLWQLSKIARSDEFSSSLIRLTQSLTVGILRGYQSQSNSEGKDESSVVNSSFAERIMDKVFSSAGSGFASVVVGSFARNLVLGFFSAGQSETCGEPNSKTSSNMDRFGSEKNPVPEWMNVVFSDKCRDLIGDCIQVFVSTAVAVYLDKTMEVNTYDELFSGLTNPKHETKVRDMLVSVCNGAVETLVRTSHQVLTRPTSKENLFKTNSASHFAIIDESARTQAKVVEELNQETPMSES---DEKDDNNGSGGWVSKVSSTLAVPSNRRLVLDVTGKVTFETVRSFLEFLLEKLYDGVKSCVNTVHEAVVERGLNIMRYVAAKSSVIATICLSLCLHVTSSTWLLMP 433
Match: A0A059B107 ((Uncharacterized protein {ECO:0000313|EMBL:KCW59571.1}))
HSP 1 Score: 461.07 bits (1185), Expect = 8.116e-159
Identity = 229/432 (53.01%), Postives = 300/432 (69.44%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIA--------LSDSYGGK-TNDSSNVASSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTTANPNANS---------DSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
MD+R+V+ G+D++ RR++W AAL FSGYGAYRVYN PSV ++R RLLK++GA S+AEAV++S E I ++SKD EF++SDSD+VPNSL+Q+SK+ S EF+ ++ + RA+ VG LRGY SE NV + +D V DKLF+ AGSGF SVVVGS ARN+V+A L +G D SSVP W+ VLCDD+ ++L+ D IQ FVSTAV +LEKTMDINTYDELF+GMTNPKHE++VRE L ++CNGAVET V+TSHQVL ++ NANS + LR + KQ + + L + + SGWV+K+ STLAVPSNRR VLD+TGRVTFETVRS L++++EKL D VR ++N ++EV+ +G+E RY +AKSS I T+CLSLCLHIL+G IL P
Sbjct: 1 MDVRLVKSGIDFAGRRKRWILAAAALAFSGYGAYRVYNSPSVARKRRRLLKLVGALVSLAEAVSESTETIALISKDLKEFLRSDSDEVPNSLKQISKIAKSAEFSESITEVSRALTVGALRGYNSESKDNVNGNGGVLGFTDHVLDKLFTPAGSGFVSVVVGSLARNLVMAIFMDRRSSLQSEFGNPDGGDHLATEGSSVPGWLNVLCDDRVKDLVGDCIQQFVSTAVTIFLEKTMDINTYDELFSGMTNPKHEKKVREMLVSVCNGAVETLVKTSHQVLKSSRSNANSYSVSPCLAVEGSKGLRFTGVDWKQGVLSHKGLRDSY------GPPKNSGWVDKVSSTLAVPSNRRLVLDVTGRVTFETVRSLLEYLMEKLHDGVRQSVNAVHDEVVDRGIEVVRYATAKSSIITTLCLSLCLHILDGAAILAP 426
Match: A0A1U7ZJ68 ((protein PHLOEM PROTEIN 2-LIKE A10-like {ECO:0000313|RefSeq:XP_010248353.1}))
HSP 1 Score: 458.373 bits (1178), Expect = 7.412e-158
Identity = 240/433 (55.43%), Postives = 317/433 (73.21%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDSADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIAL----SDSYGGKTNDSSNVA-----SSSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVLTT----------ANPNANSDSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSAKSSTIVTICLSLCLHILNGPWILVP 414
M+L++V+KGLD+SRRR+KW L+AALGF+G+G Y+VYNLPSVVK+R+R K++GA SVAE ++DSA+ +GIVS+D EF++SDSDQ+P SLRQ+SK+ SEEF+ + + +A+ VGILRGY+SE A N + SS SD+V D+LF+TAGSGFASVVVGSFAR++V+A S G N +V+ S+S+PRWV V+C DK + LI D IQLFVSTAVA YL+KTM+INTYDE+F+GMTNP HE +VR+ L ++CNGAVET VRTSHQVLTT A + +S +R L+ +E N D +++GWV K+ STL+VPSNR+FVLD+TGRVTFETVRS LDF+L KL D+++ +LN A+EEV+ +G+E RYVSAKSS IVT+CL+LCLH+L G +L+P
Sbjct: 1 MELQLVQKGLDFSRRRKKWLLLLAALGFTGFGVYKVYNLPSVVKKRKRFFKLMGALVSVAELISDSADTMGIVSRDLKEFLQSDSDQIPTSLRQISKIATSEEFSESLVRVTQALTVGILRGYRSE-AGNDNGAQSTSSFSDRVMDRLFTTAGSGFASVVVGSFARSLVLAFFSDRQSSGGSPPNIQESVSRLGYDSASLPRWVNVVCSDKCKELIGDCIQLFVSTAVAVYLDKTMEINTYDEIFSGMTNPNHETKVRDILVSVCNGAVETLVRTSHQVLTTSASDSDSSALAVEQGECSTIAKDEVSEQRALLPLEQKER-------NSFDG-IKDNGWVGKVSSTLSVPSNRKFVLDVTGRVTFETVRSFLDFMLWKLLDALKKSLNVAHEEVVERGLEVVRYVSAKSSVIVTVCLALCLHVLGGTRVLMP 424
Match: A0A5E4F5L9 ((Full=PREDICTED: PHLOEM PROTEIN 2-LIKE A10 {ECO:0000313|EMBL:VVA23364.1}))
HSP 1 Score: 457.218 bits (1175), Expect = 4.032e-157
Identity = 242/448 (54.02%), Postives = 320/448 (71.43%), Query Frame = 0
Query: 1 MDLRIVEKGLDYSRRRRKWGFLVAALGFSGYGAYRVYNLPSVVKRRERLLKVLGAFASVAEAVADSAEAIGIVSKDFNEFVKSDSDQVPNSLRQVSKLTMSEEFTAPVSGIMRAIAVGILRGYQSEQAKNVGDS--ADNSSLSDQVFDKLFSTAGSGFASVVVGSFARNMVIAL-SDSYGGKTNDSSNVAS--------SSVPRWVEVLCDDKFRNLIADSIQLFVSTAVAAYLEKTMDINTYDELFTGMTNPKHERQVRETLATICNGAVETFVRTSHQVL----TTANP-NANSDSDMNLRLSRRRIKQKLDGEEPLPSDFTCNELDDEDQESGWVNKMYSTLAVPSNRRFVLDMTGRVTFETVRSCLDFVLEKLSDSVRSNLNGAYEEVIYKGVEAYRYVSA------------------KSSTIVTICLSLCLHILNGPWILVP 414
MD ++ +KG DY+R+R+KW F+ AALGFSGYG YRVYNLPSV ++R+R+LK+LGA S+AE V+DSAE+IG+VSKD +F+KSDSD++PNSL+QVSK+T S EF+ V + +A+ +G+LRGY+SE A+N GD+ + NSS +DQV DKLF+ AGSGF SVVVGSFARN+V+A SD G ++S+N S +SVP WV+V+CD K R+LI D IQLFVSTAVA YL+KT++INTYD++F+G+TNPKHE +VR+ L+++CNGAVET +RTSHQVL + ANP N NS S + + S+ + + E+ L ++DDE ++SGWV K+ STLAVPSNRRFVLD+TGRV ETVRS L+F EKL D ++ N EE + KG RY ++ KSS I T+ LSLCLHI++ PW LVP
Sbjct: 1 MDHQLAKKGFDYARKRKKWLFVAAALGFSGYGVYRVYNLPSVYQKRKRILKLLGALVSIAEVVSDSAESIGVVSKDLRDFLKSDSDKIPNSLKQVSKITRSGEFSESVVKLTQAVTLGVLRGYRSE-ARNDGDNGISSNSSFTDQVMDKLFTNAGSGFVSVVVGSFARNLVLAFYSDEKSGGGSNSNNSPSMDHFVSETNSVPTWVDVVCDKKCRDLIGDCIQLFVSTAVAVYLDKTVNINTYDDIFSGLTNPKHETKVRDMLSSVCNGAVETLIRTSHQVLANSTSKANPSNLNSSSYLAIDESQTPARDEGFSEKALSMHSKATDVDDETKDSGWVGKVSSTLAVPSNRRFVLDVTGRVASETVRSFLEFSSEKLFDGMKGYANSVREETVDKGFGIVRYANSVREETVDKGFGIVRYAVGKSSVIATVWLSLCLHIMDSPWALVP 447
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A875 | E-Value: 3.131e-167, PID: 59.21 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5284... [more] |
| A0A2P6RP94 | E-Value: 1.006e-164, PID: 54.93 | (Uncharacterized protein {ECO:0000313|EMBL:PRQ4824... [more] |
| A0A2R6R5E2 | E-Value: 2.177e-163, PID: 56.74 | (Protein PHLOEM PROTEIN 2-LIKE like {ECO:0000313|E... [more] |
| A0A834ZC94 | E-Value: 9.034e-163, PID: 57.04 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8404... [more] |
| A0A6I9UDZ3 | E-Value: 8.373e-162, PID: 56.32 | (protein PHLOEM PROTEIN 2-LIKE A10 {ECO:0000313|Re... [more] |
| A0A314UUN7 | E-Value: 8.384e-160, PID: 54.14 | (Protein PHLOEM PROTEIN 2-LIKE A10-like isoform X1... [more] |
| W9SJV5 | E-Value: 2.217e-159, PID: 53.67 | (Uncharacterized protein {ECO:0000313|EMBL:EXC1262... [more] |
| A0A059B107 | E-Value: 8.116e-159, PID: 53.01 | (Uncharacterized protein {ECO:0000313|EMBL:KCW5957... [more] |
| A0A1U7ZJ68 | E-Value: 7.412e-158, PID: 55.43 | (protein PHLOEM PROTEIN 2-LIKE A10-like {ECO:00003... [more] |
| A0A5E4F5L9 | E-Value: 4.032e-157, PID: 54.02 | (Full=PREDICTED: PHLOEM PROTEIN 2-LIKE A10 {ECO:00... [more] |
Pages
back to top| Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |