DCAR_024898

Resource Type: 
Polypeptide
Name: 
DCAR_024898
Identifier: 
DCAR_024898.mRNA-protein
Sequence: 
MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGR
IADFTRNNPNPRNNRVNPNDSAFDFTGDDSFAADDDASFRLVDGKPPPRP
KFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRS
GGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCG
GLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATV
FATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETS
QEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFAS
EGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEF
DPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLG
YVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMK
LKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENAD
GADSTTAATNDVEDKEIKA*
Sequence Length: 
570
Sequence Checksum: 
b86c71075a0955be67a905db3ea3cadd
View location in JBrowse: 
DCARv2_Chr7:20562329..20564038-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_024898, derives from mRNA, DCAR_024898.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YIZ6 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 1012.68 bits (2617), Expect = 0.000e+0
Identity = 497/573 (86.74%), Postives = 531/573 (92.67%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRNNPNPR---NNRVNPNDSAFDFTGDDSF---AADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEI 567
            MVGF+I  VP+NPDGWGP +SSS     +L NHP+NVPFAPFSRSDKLGRIAD+TRN  NP    N+  NP+DS FDFTGD+SF   AAD+D+SFRLVDGKPPPRPKFGPKWRF Q     RNQLPQRRDEEVEA+KREAE++RARRDRLY+LNRSGGNN RREAAVFKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILS+LMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+R+G KV+FEE NPFA+EGEEVASV YRYRRWKLDNDMYLVARCEVQSVVEVNN RSFLT NALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDYVEEPLPE+EQVQPP ENADG ++  A+TNDVEDKEI
Sbjct:    1 MVGFDIGDVPFNPDGWGPPESSSP----LLSNHPTNVPFAPFSRSDKLGRIADWTRNYNNPTRNTNHPRNPSDSVFDFTGDESFGGVAADEDSSFRLVDGKPPPRPKFGPKWRFQQQ----RNQLPQRRDEEVEARKREAEKERARRDRLYHLNRSGGNNQRREAAVFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSSLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIREGNKVTFEEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVQSVVEVNNQRSFLTQNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPAENADGGEA-NASTNDVEDKEI 564
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YJ37 ((Putative eukaryotic translation initiation factor 3 subunit D-like {ECO:0000313|EMBL:MPA31751.1}) (Fragment))

HSP 1 Score: 1004.59 bits (2596), Expect = 0.000e+0
Identity = 492/575 (85.57%), Postives = 528/575 (91.83%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRNNPNPR---NNRVNPNDSAFDFTGDDSF---AADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEIKA 569
            MVGF+I  VP+NPDGWGP +SSS     +L NHP+NVPFAPFSRSDKLGRIAD+TRN  NP    N+  NP+DS FDFTGD+SF   AAD+D+SFRLVDGKPPPRPKFGPKWRF Q     RNQLPQRRDEEVEA+KREAE++RARRDRLY+LNRSGGNN RREAAVFKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMC+PRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSA+SLSVEAAYINQNFSQQVL+RDG KV+FEE NPFA+ GEEVASV YRYRRWKLD++MYLVARCEVQSVVEVNN RSFLT NALNEFD KYSGV+WR+KL+TQRGAVLATELKNNANKLAKWTAQ++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDYVEEPLPE+EQVQPP ENADG   + AATN+VEDKE  A
Sbjct:   19 MVGFDIGDVPFNPDGWGPPESSSP----LLSNHPTNVPFAPFSRSDKLGRIADWTRNYNNPTRNTNHPRNPSDSVFDFTGDESFGGVAADEDSSFRLVDGKPPPRPKFGPKWRFQQQ----RNQLPQRRDEEVEARKREAEKERARRDRLYHLNRSGGNNQRREAAVFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCSPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGDKVTFEEPNPFANVGEEVASVAYRYRRWKLDDEMYLVARCEVQSVVEVNNQRSFLTQNALNEFDTKYSGVDWRQKLDTQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPMENADGGGESNAATNEVEDKEKSA 585
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YJ28 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 1001.12 bits (2587), Expect = 0.000e+0
Identity = 497/575 (86.43%), Postives = 528/575 (91.83%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRNNPNPRNNRVN---PNDSAFDFTGDDSFA---ADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEIKA 569
            MVGFEI AVP+NPDGWGP +SSS     +LPNHP+NVPFAPFSRSDKLGRIAD+TRN  N   N  N   P+DS FDFTGD+SF    AD+D+SFRLVDGKPPPRPKFGPKWRF Q     RNQLPQRRDEEVEA+KREAE++RARRDRLY+LNRSGG  PRREAAVFKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILS+LMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+R+G KV+FEE NPFA+EGEEVASV YRYRRWKLDNDMYLVARCEVQSVVEVNN RSFLT NALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDYVEEPLPE+EQVQPP ENADG   + AATN+VEDKE  A
Sbjct:    1 MVGFEIGAVPFNPDGWGPPESSSA----LLPNHPNNVPFAPFSRSDKLGRIADWTRNYNNQNRNTNNPRNPSDSVFDFTGDESFGGVGADEDSSFRLVDGKPPPRPKFGPKWRFQQQ----RNQLPQRRDEEVEARKREAEKERARRDRLYHLNRSGG--PRREAAVFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSSLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIREGNKVTFEEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVQSVVEVNNQRSFLTQNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPMENADGGGESNAATNEVEDKEKSA 565
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZBU2 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0
Identity = 493/573 (86.04%), Postives = 526/573 (91.80%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRN---NPNPRNNRVNPNDSAFDFTGDDSF---AADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEI 567
            MVGFEI AVP+NPDGWGP +SSS     +LPNHP+NVPFAPFSRSDKLGRIAD+TRN        NN  NP+DS FDFTGD+SF   A DDD+SFRLVDGKPPPRPKFGPKWRF Q     RNQLPQRRDEEVEA+KREAE++RARRDRLY++NRSGGN  RREAAVFKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TP+NERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMC+PRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+RDG KV+FEE NPFA+EGEEVASV YRYRRWKLD++MYLVARCEVQSVVEVNN RSFLT NALNEFD KYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVP DAFENDYVEEPLPE+EQVQPP ENAD  ++  AATNDVEDKEI
Sbjct:    1 MVGFEIGAVPFNPDGWGPPESSSA----LLPNHPNNVPFAPFSRSDKLGRIADWTRNYNNPTRNTNNPRNPSDSVFDFTGDESFGGVAGDDDSSFRLVDGKPPPRPKFGPKWRFQQQ----RNQLPQRRDEEVEARKREAEKERARRDRLYHMNRSGGNAQRREAAVFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPRNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCSPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGDKVTFEEPNPFANEGEEVASVAYRYRRWKLDDEMYLVARCEVQSVVEVNNQRSFLTQNALNEFDAKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEEEQVQPPAENADAGEA-NAATNDVEDKEI 564
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QLF6 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 996.112 bits (2574), Expect = 0.000e+0
Identity = 485/574 (84.49%), Postives = 526/574 (91.64%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRN----NPNPRNNRVNPNDSAFDFTGDDSF---AADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEI 567
            MVGF++  VP+N DGWGP +SSS     +LPNHP+NVPFAPFSRSDKLGRIAD+TRN    N NP N R  P+DS FDF GD+SF   A D+D+SFRLVDG+PPPRPKFGP+WRF Q++HN R+ LPQRRDEEVEAK+R+AE++RARRDRLY+LNRSGGN PRREAA FKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDRTYDRITPKN + LERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+RDG KV FEE NPFA+EGEEVASV YRYRRWKLD++MYLVARCEVQSV EVNN RSFLTLNALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWT+Q++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKPK+FA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDY+EEPLPE+EQVQPP E+ +G ++  A TNDVEDKEI
Sbjct:    1 MVGFDVGTVPFNSDGWGPPESSSH----LLPNHPTNVPFAPFSRSDKLGRIADWTRNFNNQNRNPSNPRY-PSDSVFDFAGDESFGGAAGDEDSSFRLVDGRPPPRPKFGPRWRF-QHHHNQRSHLPQRRDEEVEAKRRDAEKERARRDRLYHLNRSGGNAPRREAAAFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRTYDRITPKNSKPLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVGFEEGNPFANEGEEVASVAYRYRRWKLDDEMYLVARCEVQSVAEVNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTSQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYMEEPLPEEEQVQPPAEDVEGGEA-IATTNDVEDKEI 567
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RAR8 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 995.342 bits (2572), Expect = 0.000e+0
Identity = 486/574 (84.67%), Postives = 527/574 (91.81%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRN----NPNPRNNRVNPNDSAFDFTGDDSFA---ADDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEI 567
            MVGF++  VP+N DGWGP +SSS     +LPNHPSNVPFAPFSRSDKLGRIAD+TRN    N NP N R N +DS FDFTGD+SF    AD+D+SFRLVDG+PPPRPKFGP+WRF Q++HN R+ LPQRRDEEVEAK+REAE++RARRDRLY+LNRSGGN PRREAA FKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDRTYDRITPKN + LERFKNRNFFKVTTTDDPVIRRLANEDKA+VFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+RDG KV FEE NPFA+EGEEVASV YRYRRWKLD++MYLVARCEVQSV EVNN RSFLTLNALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWT+Q++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP++FA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDY+EEPLPE+EQVQPP E+A+G ++   ATNDVEDK I
Sbjct:    1 MVGFDVGTVPFNSDGWGPPESSSP----LLPNHPSNVPFAPFSRSDKLGRIADWTRNFNIQNRNPSNPR-NASDSVFDFTGDESFGGGGADEDSSFRLVDGRPPPRPKFGPRWRF-QHHHNQRSHLPQRRDEEVEAKRREAEKERARRDRLYHLNRSGGNAPRREAAAFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRTYDRITPKNSKPLERFKNRNFFKVTTTDDPVIRRLANEDKASVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVGFEEGNPFANEGEEVASVAYRYRRWKLDDEMYLVARCEVQSVAEVNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTSQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYMEEPLPEEEQVQPPAEDAEGGEAIV-ATNDVEDKVI 567
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQ20 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 987.638 bits (2552), Expect = 0.000e+0
Identity = 492/575 (85.57%), Postives = 520/575 (90.43%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRN---NPNPRNNRVNPNDSAFDFTGDDSFAA---DDDASFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEIKA 569
            MVGF+I  VP NPDGWGP +SSS     +L NHP NVPFAPFSRSDKLGRIAD+TRN        NN  NP+DS FDFTGD+SF     DDD+SFRLVDGKPPPRPKFGPKWRF QN    RNQLPQRRDEEVEA+KREAE++RARRDRLY+LNRSGGN  RREAA FKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TPKNERRLERFKNRNFFKVTTTDDP+IRRLANEDKATVFATDSILSTLMC+ RSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+RDG KV+FEE NPFA+EGEEVASV YRYRRWKLD DMYLVARCEVQSVVEVNN RSFLTLNALNEFD KYSGV+WR+KLETQRGAVLATELKNNANKLAKWT Q+ILASADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVPADAFENDYVEEPLPEDEQVQP  +NADG +S   ATNDVEDKEI+ 
Sbjct:    1 MVGFDIGDVPCNPDGWGPPESSSP----LLSNHPINVPFAPFSRSDKLGRIADWTRNYNNPTRNTNNPRNPSDSVFDFTGDESFGGVTGDDDSSFRLVDGKPPPRPKFGPKWRFQQN----RNQLPQRRDEEVEARKREAEKERARRDRLYHLNRSGGNAQRREAAAFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPKNERRLERFKNRNFFKVTTTDDPIIRRLANEDKATVFATDSILSTLMCSSRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVTFEEPNPFANEGEEVASVAYRYRRWKLDGDMYLVARCEVQSVVEVNNQRSFLTLNALNEFDTKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTVQAILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPLVDNADGGESNL-ATNDVEDKEIRV 566
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VTP1 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 985.326 bits (2546), Expect = 0.000e+0
Identity = 490/586 (83.62%), Postives = 531/586 (90.61%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTR--NNPN-PRNNRVNPN--DSAFDFTGDDSFA---ADDDASFRLVD--------GKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGN-NPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEIKA 569
            MVGFE+ AVP+NPDGWGP DSS T+N + +PNHPSNVPFAPFSRSDKLGRIAD+TR  +NPN P +N  N N  DSAFDFTGDDSFA   AD+D+SFRLVD        G    RPKF P+WRFN ++H  R+QLPQRRDEEVEA+KREAE++RARRDRLYNLNRS  N  PRRE+AVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLL+CGGLEFYDR+YDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATD+ILS+LMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLP+ KDDINSAYSLSVEAAYINQNFSQQVL+RDG KV+FEE NPFA+EGEEVASV YRYRRWKLD+DMYLVARCEVQSVVE+NN RSFLTLNALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++L SADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVP DAFENDYVEEPLPE+EQVQPP E+A+G ++  A  NDVEDK++ A
Sbjct:    1 MVGFEVGAVPFNPDGWGPPDSS-TANSISVPNHPSNVPFAPFSRSDKLGRIADWTRAISNPNRPGSNPSNKNVSDSAFDFTGDDSFATLAADEDSSFRLVDNAASKSHHGHHQNRPKFNPRWRFNPHHH--RSQLPQRRDEEVEARKREAEKERARRDRLYNLNRSSTNAGPRRESAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLVCGGLEFYDRSYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSSLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPDVKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVTFEEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVELNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEEEQVQPPAEDAEGGEA-NATANDVEDKDVSA 582
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W9V0 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 984.941 bits (2545), Expect = 0.000e+0
Identity = 489/586 (83.45%), Postives = 532/586 (90.78%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTR--NNPN-PRNNRVNPN--DSAFDFTGDDSFA---ADDDASFRLVD--------GKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGN-NPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEIKA 569
            MVGFE+ AVP+NPDGWGP DSS T+N + +PNHPSNVPFAPFSRSDKLGRIAD+TR  +NPN P +N  N N  DSAFDFTGDDSFA   AD+D+SFRLVD        G    RPKF P+WRFN ++H  R+QLPQRRDEEVEA+KREAE++RARRDRLYNLNRS  N  PRRE+AVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLL+CGGLEFYDR+YDRITP+NERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATD+ILS+LMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLL+VHETSQEPLP+ KDDINSAYSLSVEAAYINQNFSQQVL+RDG KV+FEE NPFA+EGEEVASV YRYRRWKLD+DMYLVARCEVQSVVE+NN RSFLTLNALNEFDPKYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++L SADMMKLGYVSRVHPRDHFNHVILAVVGYKP+EFA+QINLN SNMWGIVKSIVDLCMKL EGKYVLVKDP KPQVRIYEVP DAFENDYVEEPLPE+EQVQPP E+A+G ++  A  NDVEDK++ A
Sbjct:    1 MVGFEVGAVPFNPDGWGPPDSS-TANSISVPNHPSNVPFAPFSRSDKLGRIADWTRAISNPNRPGSNPSNKNVSDSAFDFTGDDSFATLAADEDSSFRLVDNAASKSHHGHHQNRPKFNPRWRFNPHHH--RSQLPQRRDEEVEARKREAEKERARRDRLYNLNRSSTNAGPRRESAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLICGGLEFYDRSYDRITPRNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSSLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPDVKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVTFEEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVELNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLGSADMMKLGYVSRVHPRDHFNHVILAVVGYKPREFASQINLNTSNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPPDAFENDYVEEPLPEEEQVQPPAEDAEGGEA-NATANDVEDKDVSA 582
[Close]
BLAST of DCAR_024898 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EC31 (Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003} (eIF3d {ECO:0000256|HAMAP-Rule:MF_03003}) (Eukaryotic translation initiation factor 3 subunit 7 {ECO:0000256|HAMAP-Rule:MF_03003}) (eIF-3-zeta {ECO:0000256|HAMAP-Rule:MF_03003}))

HSP 1 Score: 978.778 bits (2529), Expect = 0.000e+0
Identity = 486/579 (83.94%), Postives = 520/579 (89.81%), Query Frame = 0
 
Query:    1 MVGFEIAAVPYNPDGWGPLDSSSTSNGVVLPNHPSNVPFAPFSRSDKLGRIADFTRN-NP-----NPRNNRVNPNDSAFDFTGDDSFAADDDA----SFRLVDGKPPPRPKFGPKWRFNQNYHNNRNQLPQRRDEEVEAKKREAERDRARRDRLYNLNRSGGNNPRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVPEPEDLLMCGGLEFYDRTYDRITPKNERR--LERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGGKVSFEEANPFASEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNSRSFLTLNALNEFDPKYSGVEWRRKLETQRGAVLATELKNNANKLAKWTAQSILASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKEFATQINLNVSNMWGIVKSIVDLCMKLKEGKYVLVKDPIKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPTENADGADSTTAATNDVEDKEI 567
            MVGFE+ AVP+NPDGWGP +S+S     +LPNH SNVPFAPFSRSDK+GRIAD+TRN NP     NPRN+  +P+DS FDFTGDDSF     A    +FRLVDGKPPPRP+FGPKWRF Q     RN LPQRRDEEVEAKKREAE++RARRDRLY+LNRSGG+  RREAAVFKSSVDIQPEWNMLDQIPFSTF+KLSFSVPEPEDLL+CG LEFYDR+YDR+TPKN R   LERFKNRNFFKVTTTDDP+IRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLF DKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVL+RDG KV FEE NPFA+EGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNN RSFLTLNALNEFD KYSGV+WR+KLETQRGAVLATELKNNANKLAKWTAQ++LASADMMKLGYVSRVHPRDHFNHVILAVVGYKP++FA QINLN SNMWGIVKSIVDLCMKL EGKYV VKDP KPQVRIYEVP DAFENDYVEEPLPE+EQVQPP E+ +G +   AATND EDKE+
Sbjct:    1 MVGFEVGAVPFNPDGWGPPESTSP----LLPNHLSNVPFAPFSRSDKVGRIADWTRNYNPTRNSTNPRNS-THPSDSVFDFTGDDSFGGAAAADDDATFRLVDGKPPPRPRFGPKWRFQQQ----RNHLPQRRDEEVEAKKREAEKERARRDRLYHLNRSGGHGQRREAAVFKSSVDIQPEWNMLDQIPFSTFTKLSFSVPEPEDLLLCGALEFYDRSYDRVTPKNARARPLERFKNRNFFKVTTTDDPIIRRLANEDKATVFATDSILSTLMCAPRSVYSWDIVIQRVGNKLFLDKRDGSQLDLLAVHETSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGDKVGFEEPNPFANEGEEVASVGYRYRRWKLDNDMYLVARCEVQSVVEVNNQRSFLTLNALNEFDSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPRDFAAQINLNTSNMWGIVKSIVDLCMKLNEGKYVFVKDPSKPQVRIYEVPVDAFENDYVEEPLPEEEQVQPPAEDEEGGE-VIAATNDGEDKEV 569
Match NameStatsDescription
A0A5B6YIZ6E-Value: 0.000e+0, PID: 86.74Eukaryotic translation initiation factor 3 subunit... [more]
A0A5B6YJ37E-Value: 0.000e+0, PID: 85.57(Putative eukaryotic translation initiation factor... [more]
A0A5B6YJ28E-Value: 0.000e+0, PID: 86.43Eukaryotic translation initiation factor 3 subunit... [more]
A0A5J4ZBU2E-Value: 0.000e+0, PID: 86.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A2R6QLF6E-Value: 0.000e+0, PID: 84.49Eukaryotic translation initiation factor 3 subunit... [more]
A0A2R6RAR8E-Value: 0.000e+0, PID: 84.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A5J4ZQ20E-Value: 0.000e+0, PID: 85.57Eukaryotic translation initiation factor 3 subunit... [more]
A0A6P6VTP1E-Value: 0.000e+0, PID: 83.62Eukaryotic translation initiation factor 3 subunit... [more]
A0A6P6W9V0E-Value: 0.000e+0, PID: 83.45Eukaryotic translation initiation factor 3 subunit... [more]
A0A4S4EC31E-Value: 0.000e+0, PID: 83.94Eukaryotic translation initiation factor 3 subunit... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.