XM_017376468.1

Resource Type: 
Polypeptide
Name: 
XM_017376468.1
Identifier: 
XM_017376468.1-protein
Sequence: 
MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQ
RFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSF
NYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVY
PYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGER
NTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSF
GSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTN
ETFKWHEYLSWKRKVNEARASAEALKSSLAELSQEKPPQSKWKTFFQRSP
LKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG
Sequence Length: 
391
Sequence Checksum: 
4dc11a1dfe387a2f28aad746a0b656da
View location in JBrowse: 
DCARv2_Chr1:22460477..22465703-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017376468.1, derives from mRNA, XM_017376468.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HIT2 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 646.351 bits (1666), Expect = 0.000e+0
Identity = 301/392 (76.79%), Postives = 348/392 (88.78%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQEKP-PQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQW+LVCHGLVTLLVVVSFLCG+WPIF GTFI+RIH FLTFGAYDYF+R V  I G++GT+A+LS+EYYCCDRPNPILQ IYLAIIGATYYFIV S F+YIPG+Y+  +HR   ++AVGVG+LLFLLTS+SDPG VN EN S+Y+S YPYDNAIY+EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYF+AFL+WHF+LC+YG VAIAL+LAG++KE +V+YILT +YGI+NSF SLAPHVVQW LGSYNTQIL+MVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKW EYLSWKRKV+EA+ SA ALK+S++ LS E+  P+SKW+ FF+RS L+D E VK+NIYD+GY+ N+ EI FPLS+R  F Q KSKSG
Sbjct:    3 MSVQWILVCHGLVTLLVVVSFLCGQWPIFRGTFIERIHYFLTFGAYDYFRRIVGVICGSRGTDALLSVEYYCCDRPNPILQIIYLAIIGATYYFIVKSVFSYIPGYYLSEVHRLTCLLAVGVGILLFLLTSYSDPGTVNAENVSQYLSAYPYDNAIYLEKECSTCKTLKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCIYGTVAIALVLAGRVKELKVVYILTVYYGIENSFRSLAPHVVQWLLGSYNTQILLMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWEEYLSWKRKVHEAKVSAAALKASISGLSSERQRPESKWRAFFRRSRLEDVEVVKDNIYDKGYLYNLHEIFFPLSTRPSFSQAKSKSG 394
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0A0L4S8 ((Uncharacterized protein {ECO:0000313|EMBL:KGN55999.1}))

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 294/392 (75.00%), Postives = 336/392 (85.71%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQWLL+CHG VTLLVVVSFLCG+WPIF+GT IQRIH F+T GAYDYF RFV Y+FG+KGTNA+L++E +CCDRPNPILQ IYLAIIG TYY I  S+F Y+PG+Y+ GIHRY S +AV VGVLLFLLTSFSDPG VN +N +RY+S YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYF+AFL+WHF+LCVYG VAI L+LAGQLKE +VIY+LT +YGI+NSF  LAP+VVQW LGSYNTQ+L+MVFLAIVSLLL GFFGYHA LCLTNTTTNETFKW EYLSW+RKVNEA+ASA ALK+S+  LS E KPP+SKW+T F+RS L+  + VKNN YDRG + N+ E+IFP SSR  F + K KSG
Sbjct:  762 MAVQWLLLCHGFVTLLVVVSFLCGQWPIFEGTPIQRIHHFITSGAYDYFLRFVGYLFGSKGTNAVLAVESFCCDRPNPILQVIYLAIIGVTYYIITMSTFQYVPGYYLSGIHRYTSFLAVTVGVLLFLLTSFSDPGTVNADNVTRYLSAYPYDNIIYSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCVYGTVAIGLVLAGQLKELKVIYVLTVYYGIENSFSGLAPYVVQWILGSYNTQLLLMVFLAIVSLLLGGFFGYHAKLCLTNTTTNETFKWQEYLSWQRKVNEAKASAAALKTSMDGLSSERKPPESKWRTIFRRSRLEQVQVVKNNTYDRGLLHNIHEVIFPFSSRPSFSRRKPKSG 1153
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7N0T9 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 637.491 bits (1643), Expect = 0.000e+0
Identity = 295/392 (75.26%), Postives = 343/392 (87.50%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE--KPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKS 390
            M VQWLLVCHGLVTLLVVVSFLCG+WPIF GTFIQRIH FLTFGA+DYF+RF+ Y+FG++GTNA+   +YYCCDRPNPILQA+YLAI+G TYY IV ++FNYIPGHYI G HRY S++AVGVG+LLFLL SFSDPG +N+EN S+Y+S+YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGE+NT YFV FL WHF LCVYG VAI L+LAG+LKE +V+YILT +YGI+NSF SL PHVVQW + SYNTQIL+MVFLAIVSLLL+GFFGYHA+LCL+NTTTNETFKW +YLSW+RKV EA+ASAEALK+SL ELS +  KPPQSKWK+FF++S L+D   VKNNIYDRG+++N+ EII+PLSSR  F   K K+
Sbjct:    1 MAVQWLLVCHGLVTLLVVVSFLCGQWPIFQGTFIQRIHNFLTFGAFDYFRRFIEYVFGSRGTNALHLAQYYCCDRPNPILQAMYLAIVGGTYYLIVYTTFNYIPGHYIAGYHRYTSMLAVGVGILLFLLASFSDPGTINSENVSQYLSLYPYDNIIYSEKECSTCKILKPARSKHCSICDRCVARFDHHCGWMNNCIGEKNTLYFVMFLFWHFFLCVYGTVAIGLVLAGRLKELEVVYILTAYYGIENSFRSLTPHVVQWLVNSYNTQILVMVFLAIVSLLLSGFFGYHASLCLSNTTTNETFKWQDYLSWQRKVEEAKASAEALKASLDELSSQEIKPPQSKWKSFFRKSHLEDINIVKNNIYDRGFLKNLYEIIYPLSSRHSFSFNKLKN 392
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6LJ04 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0
Identity = 294/392 (75.00%), Postives = 342/392 (87.24%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE--KPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKS 390
            M VQWLLVCHGLVTLLVVVSFLCG+WPIF GTFIQRIH FLTFGA+DYF+RF+ Y+FG++GTNA+   +YYCCDRPNPILQA+YLAI+G TY  IV ++FNYIPGHYI G HRY S++AVGVG+LLFLL SFSDPG +N+EN S+Y+S+YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGE+NT YFV FL WHF LCVYG VAI L+LAG+LKE +V+YILT +YGI+NSF SL PHVVQW + SYNTQIL+MVFLAIVSLLL+GFFGYHA+LCL+NTTTNETFKW +YLSW+RKV EA+ASAEALK+SL ELS +  KPPQSKWK+FF++S L+D   VKNNIYDRG+++N+ EII+PLSSR  F   K K+
Sbjct:    1 MAVQWLLVCHGLVTLLVVVSFLCGQWPIFQGTFIQRIHNFLTFGAFDYFRRFIEYVFGSRGTNALYLAQYYCCDRPNPILQAMYLAIVGGTYCLIVYTTFNYIPGHYIAGYHRYTSMLAVGVGILLFLLASFSDPGTINSENVSQYLSLYPYDNIIYSEKECSTCKILKPARSKHCSICDRCVARFDHHCGWMNNCIGEKNTLYFVMFLFWHFFLCVYGTVAIGLVLAGRLKELEVVYILTAYYGIENSFRSLTPHVVQWLVNSYNTQILVMVFLAIVSLLLSGFFGYHASLCLSNTTTNETFKWQDYLSWQRKVEEAKASAEALKASLDELSSQEIKPPQSKWKSFFRKSHLEDINIVKNNIYDRGFLKNLYEIIYPLSSRHSFSFSKLKN 392
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1CQW0 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 295/392 (75.26%), Postives = 339/392 (86.48%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQWLL+CHGLVTLLVVVSFLCG+WPIF+GT IQRIH FLTFGAY+YF RFV Y+FG+KGTNA+L+IE +CCDRPNP+LQ IYLAIIG TYY I  S+F+Y+PG+Y+ GIHRY S +AV VGVLLFLLTSFSDPG VN +N SRY+S YPYDN I+ EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYF+AFL+WHF+LCVYG VAI L+LAGQLKE +VIYILT +YGI+NS   LAP+VVQW LGSYNTQ+L+MVFLAIV LLL GFFGYHA LCLTNTTTNETFKW +Y+SW+RKVNEA+ASA ALK+S+  LS E KPP+SKW+T F+RS L+  + VKNNIYD+G   N++E+IFP SSR  F Q KSKSG
Sbjct:    1 MAVQWLLLCHGLVTLLVVVSFLCGQWPIFEGTPIQRIHHFLTFGAYNYFSRFVAYVFGSKGTNAVLAIEGFCCDRPNPLLQVIYLAIIGVTYYIITISTFSYVPGYYLSGIHRYTSFLAVTVGVLLFLLTSFSDPGTVNADNVSRYLSAYPYDNIIFSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCVYGTVAIGLVLAGQLKELKVIYILTVYYGIENSLSGLAPYVVQWILGSYNTQLLLMVFLAIVCLLLGGFFGYHAKLCLTNTTTNETFKWQDYISWQRKVNEAKASAAALKTSMDSLSSERKPPESKWRTLFRRSQLEQVQVVKNNIYDQGLFHNINEVIFPFSSRPSFSQSKSKSG 392
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251TUU1 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 632.869 bits (1631), Expect = 0.000e+0
Identity = 294/396 (74.24%), Postives = 344/396 (86.87%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE--KPPQSKWKTFFQRSPLKD---TEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            MGVQWLLVCHGLVTLLVVVSFLCG+WPIF GTFIQR+H FLTFGA+DYF+RFV ++FG++GTNA+   +YYCCDRPNPILQA+YLAI+G T+Y IV S+FNYIP +Y+GG HRY SV+AVGVG LLFLLTSFSDPG +N EN S+Y+S+YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGE+NT YFV FL+WHF LCVYG VAI L+LAG+LKE +V+YILT +YGI+NS+ SLAPHVVQW + SYNTQILIMVFLAIVSLLL+GFFGYH +LC++NTTTNETFKW +YLSW+RKV EA+AS EALK+SL +LSQE  KP QSKWK+FF+RS L+     E +KNNIYDRG+ +N+ EII+PLSSR  F  +K K+G
Sbjct:    1 MGVQWLLVCHGLVTLLVVVSFLCGQWPIFQGTFIQRLHTFLTFGAFDYFRRFVEFVFGSRGTNALYITQYYCCDRPNPILQALYLAIVGGTFYLIVISTFNYIPSYYMGGYHRYTSVLAVGVGFLLFLLTSFSDPGTINAENVSQYLSLYPYDNIIYSEKECSTCKILKPARSKHCSICDRCVARFDHHCGWMNNCIGEKNTLYFVMFLLWHFFLCVYGTVAIGLVLAGRLKELEVVYILTAYYGIENSYRSLAPHVVQWLISSYNTQILIMVFLAIVSLLLSGFFGYHFSLCVSNTTTNETFKWEDYLSWQRKVKEAKASTEALKASLDDLSQETTKPQQSKWKSFFKRSKLEQDDGVEIIKNNIYDRGFFQNLYEIIYPLSSRHSFSAHKLKTG 396
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3BL23 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0
Identity = 294/392 (75.00%), Postives = 337/392 (85.97%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTEPVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQWLL+CHG VTLLVVVSFLCG+WPIF+GT IQRIH F+T GAYDYF RFV Y+FG+KGTNA+L++E +CCDRPNPILQ IYLAIIG TYY I  S+F Y+PG+Y+ GIHRY S +AV VGVLLFLLTSFSDPG VN +N +RY+S YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYF+AFL+WHF+LC+YG VAI L+LAGQLKE +VIY+LT +YGI+NSF SLAP+VVQW LGSYNTQ+L+MVFLAIVSLLL GFFGYHA LCLTNTTTNETFKW EYLSW+RKVNEARASA ALK+S+  LS E KPP+SKW+T F+RS L+  + VKNN YD+G + N+ E+IFP SSR  F + K KSG
Sbjct:    1 MAVQWLLLCHGFVTLLVVVSFLCGQWPIFEGTPIQRIHHFITSGAYDYFLRFVGYVFGSKGTNAVLAVESFCCDRPNPILQVIYLAIIGVTYYIITMSTFQYVPGYYLSGIHRYTSFLAVTVGVLLFLLTSFSDPGTVNADNVTRYLSAYPYDNIIYSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCIYGTVAIGLVLAGQLKELKVIYVLTVYYGIENSFSSLAPYVVQWILGSYNTQLLLMVFLAIVSLLLGGFFGYHAKLCLTNTTTNETFKWQEYLSWQRKVNEARASAAALKTSMDGLSSERKPPESKWRTIFRRSRLEQVQVVKNNTYDQGLLHNIHEVIFPFSSRPSFSRRKPKSG 392
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4EAK5 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 629.787 bits (1623), Expect = 0.000e+0
Identity = 295/393 (75.06%), Postives = 341/393 (86.77%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTE-PVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQW+L+CHGLVTLLV+VSFLCG+WPIF+GT IQRIH FLTFGAYDYFQRFV ++FG KGTNAI S+EY+CCDRPNPILQ IYLAI+G TY+ +  SSF YIPG+YIG IHRY S++AVGVGVLLFLLT FSDPG V  +N S+Y+S YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNT+YF+AFL+WH +LC+YG VAI LILAGQ+KE +VI ILT +YGI+NSF SL+PHVVQW LG+YNTQIL+MVFLAIVSL LAGFFGYHA LCLTNTTTNETFKW EY+SW+RK+NEARAS+ ALK+S++ +S E KPP++KW+  F+RSPLKD E  V NNIYD+G+ +N+ EII PLS RQL  Q KSKSG
Sbjct:    1 MEVQWILLCHGLVTLLVLVSFLCGQWPIFEGTPIQRIHHFLTFGAYDYFQRFVGFVFGAKGTNAISSVEYFCCDRPNPILQIIYLAIVGGTYFLVANSSFGYIPGYYIGEIHRYTSLLAVGVGVLLFLLTCFSDPGTVKADNVSQYLSAYPYDNIIYSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTQYFMAFLLWHTLLCIYGTVAIGLILAGQIKEFKVIDILTVYYGIENSFRSLSPHVVQWLLGAYNTQILLMVFLAIVSLSLAGFFGYHAKLCLTNTTTNETFKWQEYVSWQRKLNEARASSAALKASISGMSSERKPPENKWRAMFRRSPLKDVEVVVTNNIYDKGFFQNILEIIMPLSRRQLSLQTKSKSG 393
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SVH3 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 296/393 (75.32%), Postives = 341/393 (86.77%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTE-PVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQW+L+CHGLVTLLV+VSFLCG+WPIF+GT IQRIH FLTFGAYDYFQRFV +IFG KGTNAI S+EY+CCDRPNPILQ IYLAI+G TY+ +  SSF YIPG+YIG IHRY S++AVGVGVLLFLLTSFSDPG V  +N S+Y+S YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNT+YF+AFL+WH +LC+YG VAI LI+AGQ+KE +VI ILT +YGI+NSF SL+PHVVQW LG+YNTQIL+MVFLAIVSL LAGFFGYHA LCLTNTTTNETFKW EY+SW+RK+NEARAS+ ALK+S+  +S E KPP++KW+  F+RSPLKD E  VKNNIYD+G+ +N  EII PLS RQL  + KSKSG
Sbjct:    1 MEVQWILLCHGLVTLLVLVSFLCGQWPIFEGTPIQRIHHFLTFGAYDYFQRFVGFIFGAKGTNAISSVEYFCCDRPNPILQLIYLAIVGGTYFLVANSSFGYIPGYYIGEIHRYTSLLAVGVGVLLFLLTSFSDPGTVKADNVSQYLSAYPYDNIIYSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTQYFMAFLLWHTLLCIYGTVAIGLIIAGQIKEFKVIDILTVYYGIENSFRSLSPHVVQWLLGAYNTQILLMVFLAIVSLSLAGFFGYHAKLCLTNTTTNETFKWQEYVSWQRKLNEARASSAALKASINGMSSERKPPENKWRAMFRRSPLKDVEVVVKNNIYDKGFFQNFLEIIMPLSRRQLSLRTKSKSG 393
[Close]
BLAST of XM_017376468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A314YRU1 (S-acyltransferase {ECO:0000256|RuleBase:RU079119} (2.3.1.225 {ECO:0000256|RuleBase:RU079119}) (Palmitoyltransferase {ECO:0000256|RuleBase:RU079119}))

HSP 1 Score: 628.246 bits (1619), Expect = 0.000e+0
Identity = 295/393 (75.06%), Postives = 340/393 (86.51%), Query Frame = 0
 
Query:    1 MGVQWLLVCHGLVTLLVVVSFLCGRWPIFDGTFIQRIHIFLTFGAYDYFQRFVNYIFGTKGTNAILSIEYYCCDRPNPILQAIYLAIIGATYYFIVTSSFNYIPGHYIGGIHRYLSVVAVGVGVLLFLLTSFSDPGIVNNENFSRYVSVYPYDNAIYIEKECSTCKFTKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFVAFLIWHFILCVYGAVAIALILAGQLKESQVIYILTEFYGIDNSFGSLAPHVVQWFLGSYNTQILIMVFLAIVSLLLAGFFGYHANLCLTNTTTNETFKWHEYLSWKRKVNEARASAEALKSSLAELSQE-KPPQSKWKTFFQRSPLKDTE-PVKNNIYDRGYIRNVSEIIFPLSSRQLFKQYKSKSG 391
            M VQW+L CHGLVTLLV+VSFLCG+WPIF+GT IQRIH FLTFGAYDYFQRFV ++FG KGTNAI S+EY+CCDRPNPILQ IYLAI+G TY+ +  SSF YIPG+YIG IHRY S++AVGVGVLLFLLTSFSDPG V  +N S+Y+S YPYDN IY EKECSTCK  KPARSKHCSICDRCVARFDHHCGWMNNCIGERNT+YF+AFL+WH +LC+YG VAI LILAGQ+KE +VI ILT +YGI+NSF SL+PHVVQW LG+Y TQIL+MVFLAIVSL LAGFFGYHA LCLTNTTTNETFKW EY+SW+RK+NEARAS+ ALK+S+  +S E KPP++KW+  F+RSPLKD E  VKNNIYD+G+ +N+ EII PLS RQL  + KSKSG
Sbjct:    1 MEVQWILFCHGLVTLLVLVSFLCGQWPIFEGTPIQRIHHFLTFGAYDYFQRFVGFVFGAKGTNAISSVEYFCCDRPNPILQLIYLAIVGGTYFLVANSSFGYIPGYYIGEIHRYTSLLAVGVGVLLFLLTSFSDPGTVKADNVSQYLSAYPYDNIIYSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTQYFMAFLLWHTLLCIYGTVAIGLILAGQIKEFKVIDILTVYYGIENSFRSLSPHVVQWLLGAYTTQILLMVFLAIVSLSLAGFFGYHAKLCLTNTTTNETFKWQEYVSWQRKLNEARASSAALKASINGMSSERKPPENKWRAMFRRSPLKDVEVVVKNNIYDKGFFQNILEIIMPLSRRQLSLRTKSKSG 393
Match NameStatsDescription
A0A7J7HIT2E-Value: 0.000e+0, PID: 76.79S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A0A0L4S8E-Value: 0.000e+0, PID: 75.00(Uncharacterized protein {ECO:0000313|EMBL:KGN5599... [more]
A0A6S7N0T9E-Value: 0.000e+0, PID: 75.26S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A2J6LJ04E-Value: 0.000e+0, PID: 75.00S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A6J1CQW0E-Value: 0.000e+0, PID: 75.26S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A251TUU1E-Value: 0.000e+0, PID: 74.24S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A1S3BL23E-Value: 0.000e+0, PID: 75.00S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A5E4EAK5E-Value: 0.000e+0, PID: 75.06S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A6P5SVH3E-Value: 0.000e+0, PID: 75.32S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
A0A314YRU1E-Value: 0.000e+0, PID: 75.06S-acyltransferase {ECO:0000256|RuleBase:RU079119} ... [more]
back to top
Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.