XM_017375425.1

Resource Type: 
Polypeptide
Name: 
XM_017375425.1
Identifier: 
XM_017375425.1-protein
Sequence: 
MNSNYGRSNKTSSFDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSW
QPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNN
IGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGG
MKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVG
GSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDF
QNAPKPNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFD
VLFPTSSTDGGAKGLEDLGGQQSSGIGGWDTEFGGGDDKGGTTELEGLPP
PPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVL
SSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLG
AEDLRTVMKLDPGNRVARSTIHRLTKMAEG
Sequence Length: 
480
Sequence Checksum: 
72a1dcd2f4c859277ad4b64bb64abb5a
View location in JBrowse: 
DCARv2_Chr1:29731579..29733464+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017375425.1, derives from mRNA, XM_017375425.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A0Z0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50472.1}))

HSP 1 Score: 515.383 bits (1326), Expect = 4.346e-178
Identity = 306/509 (60.12%), Postives = 362/509 (71.12%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNK---------TSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKN-----VASSGGGGGGWGGSGGYNASGNVGLSGG--KSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVS-NNSVPVNLS------EGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
            MNSNYG+ +++ S   +DFD G+ +N SRSLNDQKN+         +ST P   T + + SWQPNKPSWTHQPAP SQS LPG   G TSMVGDI G+SW S+A   + ++ IG+V KNPNLFGDLVG ALG NKG++NVPLKN  PVS   +    +SMG + DSLPK       +S+ G     G + G     N   +    KSTNLGGP+M S GG   GGGMSS KDPF SL++FG K AA M SE K  +NK++L  D FGDFQNA K +   S +N+ P N++        ++S M+DFG   +Q QPPVQSS VD FDVLF +SS   GA  KG E L  QQ S    W  D+EFGGG+D GGTTEL+GLPPPP+GV+++AAKNKG++ +KQGQ+ DAIKWLSWAV+LF KA DN  T EVLS RASCYKEVGEYKKAVADCTKVLE D  NV+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHR+TKMAE
Sbjct:    1 MNSNYGKPSQSVSLNNYDFDFGIGTNRSRSLNDQKNQNSSYSSSSFSSTQPKPNTTSSSSSWQPNKPSWTHQPAP-SQSNLPGLSSGSTSMVGDIFGKSWGSSA-PSSTTSTIGIVNKNPNLFGDLVGSALGQNKGNTNVPLKNARPVSTQASNKSAYSMGNLADSLPKTSNPVKTSSNWGSSESLGSNTGAYNYSNNSNNVNNTKSTNLGGPSMLSKGGGVGGGGMSSKKDPFVSLVDFGSKPAASMNSEGK-GNNKSNLGNDAFGDFQNASKSSTRTSMSNAFPTNMNNSTGSNHDAYSKMDDFGIPTSQNQPPVQSSGVDAFDVLFSSSSASAGAASKGFEGLRSQQFSETDDWGFDSEFGGGNDAGGTTELDGLPPPPAGVSSSAAKNKGVDFHKQGQYADAIKWLSWAVILFEKADDNATTMEVLSCRASCYKEVGEYKKAVADCTKVLEQDSTNVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRMTKMAE 506
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MIC9 ((Uncharacterized protein {ECO:0000313|EMBL:PLY99184.1}))

HSP 1 Score: 509.605 bits (1311), Expect = 8.172e-176
Identity = 302/512 (58.98%), Postives = 354/512 (69.14%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTT---PSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK-TGSNNIGVVVKNPNLFGDLVGPALGGNKGS-SNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSN-----------------------MNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
            MNSNYGRSN++ S   FDFDLG++SN S+ LN Q N  + T   P  ATP    SWQPNKPSWTHQPA P+  S L G L GPTSMVGDITGRSWAS+AP + + ++NIG+  KNPNLF DL+G  LG  KG+ SNVPLKN+AP S        +SMGGM +SLPK   +    GG    S   + + N    G K+ NLGG +MKS   SG GGGM+SNKDPFGSL++F  K A+G KS +K TS  T    D FG FQNA K +   +N S     S GSHS                        ++DFGF   Q QPPVQSST +DFD+LF +SS D      E+L  QQ +G   W  +++ GGGD  GGTTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L  K+ DN  T EVLSSRASCYKEVGEYKKAVADC+KVLE D+KNVSVLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct:    1 MNSNYGRSNQSGSLNNFDFDLGINSNRSKPLNAQNNNNTFTQPKPYTATP----SWQPNKPSWTHQPAAPAPSSTLGGPLNGPTSMVGDITGRSWASSAPQRPSNTSNIGIASKNPNLFSDLLGSNLGAGKGNNSNVPLKNVAPASSQTASRSAYSMGGMANSLPKPGNTMNSSGGWGSSSSQGSGNYNTSGYGNKNQNLGGSSMKSSTMSGIGGGMNSNKDPFGSLVDFSSKPASGTKSGNK-TSKPTKSGDDMFGSFQNASKDSKPNTNPSF-TGSSMGSHSQPKVDDFGFGFGNISNPPPVQSSKLDDFGFNGKQNQPPVQSSTGNDFDILFASSSKDS-----ENLVSQQFAGAEDWGFESDIGGGD-VGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKSGDNVATMEVLSSRASCYKEVGEYKKAVADCSKVLEQDKKNVSVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 500
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103XJ25 ((Tetratricopeptide-like helical {ECO:0000313|EMBL:KVH91696.1}))

HSP 1 Score: 508.064 bits (1307), Expect = 6.273e-175
Identity = 305/535 (57.01%), Postives = 347/535 (64.86%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK---TGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVP-----VNLSEGSHSNMNDFGFFPTQVQP---------------------------------------PVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGWDTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
            MNSNYGRS+++ S   FDFDLG++SN S+ LN QKN T T P   T    PSWQPNKPSWTHQPA P+  S L G L GPTSMVGDITG+SWAS AP +   T + NIG+  K+PNLF DL+G  LG  KG SSNVPLKN APVS        +SMGGM DSLPK+  +   GGG WG S   G YN SG     G K+ NLGGP+MKS   SG GGGM SNKDPFGSL++F  K A G+K+     S+K+    D FG FQNA KP    S N+ P       L   S S ++DFGF   Q QP                                       PVQSS  +DFDVLF +SS   G   K  E+   QQ +G   W  E   G D GGTTELEGLPPPP+GVTA++AK KGMENYK GQ+PDAIKWLSWAV+L  +A DN  + EVLS RASCYKEVGEYKKAVADC+KVLE D KNV VLVQRALLYESMEKYKLGA+DLRTVM +DPGNRVARSTIHRL+KMA
Sbjct:    1 MNSNYGRSSQSGSLNNFDFDLGINSNRSKPLNAQKNNTFTQPKPNT-TTTPSWQPNKPSWTHQPAAPTPSSTLGGPLNGPTSMVGDITGKSWASTAPQRPSGTAATNIGIANKSPNLFSDLLGSNLGTGKGNSSNVPLKNAAPVSSQTASKSAYSMGGMSDSLPKSGNTVNSGGGNWGSSQGFGNYNTSG----YGSKNQNLGGPSMKSSTASGIGGGMGSNKDPFGSLVDFSSKPATGLKAVKTNVSSKSG--DDVFGSFQNASKP----STNAFPSTTSFTGLGMNSQSKVDDFGFGGMQNQPSVQSSGGNVFQSNTSSMGSGMNSQSKVDDFGFGGMKNPPPVQSSGGNDFDVLFSSSSASAGNASKDSENFMSQQFAGAEDWGFESEVGGDVGGTTELEGLPPPPAGVTASSAKMKGMENYKAGQYPDAIKWLSWAVILAERAGDNASSMEVLSPRASCYKEVGEYKKAVADCSKVLEQDSKNVPVLVQRALLYESMEKYKLGADDLRTVMNIDPGNRVARSTIHRLSKMA 524
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TS12 ((Uncharacterized protein {ECO:0000313|EMBL:CDO98827.1}))

HSP 1 Score: 505.368 bits (1300), Expect = 4.028e-174
Identity = 308/519 (59.34%), Postives = 363/519 (69.94%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTS----SFDFDLGLSSNNSRSLNDQKNKTSTTPSY----ATPNLAPSW--QP-NKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNA--------SGNVGLSG--GKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGD-GFGDFQNAPKPN---------VSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPV----QSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
            MNSNYG+SN  S    SFDFDLGL  + SRSLNDQKN+TS+  SY    A P+  PSW  QP NKPSWTHQPA P+QS   GSL GPTSMVGDI G+SW S+APA + ++  GVV K+PNLFGDL+G ALG NKG+SNVPLKN AP S   NKS  FSMGGM D LPK   +S    G WG S   G Y +         GNV L+G   K TNLGGP+MKS+ G G  GGM SNKDPFGSL++F  K +  MKSESK ++  +S VGD  F  FQ+A K +          S  +NS     + GS+SN++DFGFF T  QP      QS+ VD FD LF T+   G      +   Q SSG   W  +++F G  D GGTTELEGLPPPP+GV+A+ AKNKG++NYKQGQF DAIKWLSWAV+L  KA  + GT +VL+ RA+CYKEVGEYKKAVADCT+ LE D+KNV++LVQRALLYESMEKYKLGAEDLRTVM++DPGNRVARSTIHRLTKMA+
Sbjct:    1 MNSNYGKSNTKSGSLNSFDFDLGLGKSGSRSLNDQKNQTSSYGSYSSAQAKPSTTPSWTHQPINKPSWTHQPAAPAQSAGTGSLSGPTSMVGDIFGKSWGSSAPASSLNSGSGVVNKDPNLFGDLLGSALGQNKGNSNVPLKNAAPAS---NKSS-FSMGGMADELPK-TGNSTKSSGNWGSSETFGTYTSGFSSNNSDRGNVNLNGNASKGTNLGGPSMKSMAGGGGLGGMGSNKDPFGSLVDFSSKPSGNMKSESKGSA--SSKVGDDAFQSFQSASKTSGAAHPSGSFTSGKSNSTGSG-AGGSYSNVDDFGFFSTPSQPHSRPSGQSTGVDSFDALFMTTPGSGA-----EFKSQDSSGGDDWGFESDFNG-HDTGGTTELEGLPPPPAGVSASTAKNKGLDNYKQGQFADAIKWLSWAVILLEKAGGDTGTMDVLTCRAACYKEVGEYKKAVADCTEALEQDDKNVNILVQRALLYESMEKYKLGAEDLRTVMRIDPGNRVARSTIHRLTKMAD 505
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PJ36 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453655.1}))

HSP 1 Score: 503.827 bits (1296), Expect = 2.331e-173
Identity = 301/526 (57.22%), Postives = 354/526 (67.30%), Query Frame = 0
 
Query:    1 MNSNYGRSNKT---SSFDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQS-VLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSE-----GSHSNMNDFGFFPTQVQP-----------------------------------PVQSSTVDDFDVLFPTSSTDGGAKGL--EDLGGQQSSGIGGWDTEFGGGDDKGG-TTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
            MNSNYGRS ++   +SFDFDLG++SN S+ LN Q N T T P   T    PSWQPNKPSWTHQPA P+QS  L GSL GPTSMVGDI+GRSWAS+AP +  S  IG+   NPNLF DL+G  LG  KG +SNVPLKN+APVS        +SMGGM DSLPK+  S+    GGWG S G+  S N G  G K+ NLGGP+MK    SG GG M+SNKDPFGSL++F  K AAG+K+ +K+ +  TS   D FG FQNAPKP    S N  P   S      GS S ++DFGF   Q QP                                   PVQSS  DD DV+F +SS    +K    ++LG  +   +  +++E GGG    G TTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L  KA D+ G  EVLSSRASCYKEVGEYKKAVADC+KVL+ D KNV+VLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct:    1 MNSNYGRSTQSGSLNSFDFDLGINSNRSKPLNAQNNNTYTQPKPNT--TTPSWQPNKPSWTHQPAAPTQSSTLGGSLNGPTSMVGDISGRSWASSAPQRP-STGIGIANSNPNLFSDLLGSNLGTGKGINSNVPLKNVAPVSSQTTGKSAYSMGGMADSLPKS-GSTVNSAGGWGSSQGF-GSFNTGGYGNKNQNLGGPSMKGSTMSGVGGSMNSNKDPFGSLVDFSSKPAAGLKAGNKKAAPTTS-GDDAFGGFQNAPKP----STNPFPSKTSSTGSGIGSQSKLDDFGFGGMQSQPTVQSSGANLFQSNTSFMGSQLKTDNFGFGGMGNQAPVQSSGADDLDVIFSSSSAGNTSKNFANQNLGWDE---VCDFESEIGGGGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKAGDSTGAMEVLSSRASCYKEVGEYKKAVADCSKVLDQDGKNVAVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 513
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6PGX3 ((Uncharacterized protein {ECO:0000313|EMBL:KAD6453637.1}))

HSP 1 Score: 499.975 bits (1286), Expect = 7.621e-172
Identity = 299/526 (56.84%), Postives = 350/526 (66.54%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQS-VLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKG-SSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSE-----GSHSNMNDFGFFPTQVQP-----------------------------------PVQSSTVDDFDVLFPTSSTDGGAKGL--EDLGGQQSSGIGGWDTEFGGGDDKGG-TTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
            MNSNYGRS ++ S   FDFDLG++SN S+ LN Q N T T P   T    PSWQPNKPSWTHQPA P+QS  L GSL GPTSMVGDI+GRSWAS AP +  S   G+   NPNLF DL+G  LG  KG +SNVPLKN+APVS        +SMGGM DSLPK+  S+    GGWG S G+  S N G  G K+ NLGGP+MK    SG GG M+SNKDPFGSL++F  K AAG+K+ +K+ +  TS   D FG FQNAPKP    S N  P   S      GS S ++DFGF   Q QP                                   PVQSS  DD DV+F +SS    +K    ++LG  +   +  +++E GG     G TTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L  KA D+ G  EVLSSRASCYKEVGEYKKAVADC+KVL+ D KNV+VLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct:    1 MNSNYGRSTQSGSLNNFDFDLGINSNRSKPLNAQNNNTYTQPKPNT--TTPSWQPNKPSWTHQPAAPTQSSTLGGSLNGPTSMVGDISGRSWASTAPQRP-STGTGIANTNPNLFSDLLGSNLGTGKGINSNVPLKNVAPVSSQTTGKSAYSMGGMADSLPKS-GSTVNSAGGWGSSQGF-GSFNTGGYGNKNKNLGGPSMKGSTMSGVGGSMNSNKDPFGSLVDFSSKPAAGLKAGNKKAAPTTS-GDDAFGGFQNAPKP----STNPFPSKTSSTGSGIGSQSKLDDFGFGGMQSQPTVQSSGANLFQSNTSFMGSQLKTDNFGYGGMGNQAPVQSSGADDLDVIFSSSSAGNTSKNFANQNLGWDE---VCDFESEIGGRGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKAGDSTGAMEVLSSRASCYKEVGEYKKAVADCSKVLDQDGKNVAVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 513
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PJR0 ((Sperm-associated antigen 1A like {ECO:0000313|EMBL:PSR92565.1}))

HSP 1 Score: 495.352 bits (1274), Expect = 2.015e-170
Identity = 301/512 (58.79%), Postives = 355/512 (69.34%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSSF---DFDLGLSSNNSRSLNDQKNKTSTTPSYAT-------PNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSN---NIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS-------GGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPK---------PNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTD--GGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
            MNS+YG+S K  SF   DFD GL  N SR LN QKN+T++  S ++       PN  PSWQP +PSWTHQP  P  + +P      TSMVGDI  +SW S++ A+T S+   ++G+V KNPNLFGDLV  A+G NKG+SN PLKN  P S SG+  G ++MG M DSLPK   +S  GG   G S        GYN+S N+ +   K+ NLGG +M+S GG    G M +NKDPFGSL++FG K A+GM S  K   NK++  GD FGDFQNA K         P   V NN  P+  S  S++ ++DF    +Q QPPVQSS  D FD LF +SS    G AKG E LGGQQ SG   W  D+EFGGG+D GGTTELEGLPPPP+GV+A+AA NKGM+NYKQGQ+ DAIKWLSWAV+L  K  D + T EVLSSRASCYKEVGEYKKAVADCTKVL HD +NV+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRL KMAE
Sbjct:    1 MNSDYGKSTKPMSFNNHDFDFGLDLNRSRPLNAQKNQTTSYTSSSSFASTQPKPNTTPSWQP-RPSWTHQPTQPGLTTVP------TSMVGDIFEKSWGSSS-ARTNSSAKSSVGIVNKNPNLFGDLVSSAIGQNKGNSNAPLKNANPASVSGSNKGAYTMGNMADSLPK-TGNSAKGGSNLGSSESFGSYTSGYNSSSNINV---KNANLGGASMRSGGG----GNMGTNKDPFGSLVDFGSKSASGMNSAGK-GHNKSTSGGDAFGDFQNASKSSAPLFTENPFPEVKNN--PMGSSFDSYTKLDDFAILTSQNQPPVQSSGADAFDSLFNSSSATSGGAAKGSEGLGGQQFSGAEDWGMDSEFGGGNDTGGTTELEGLPPPPAGVSASAATNKGMDNYKQGQYADAIKWLSWAVILREKGGDASATMEVLSSRASCYKEVGEYKKAVADCTKVLAHDGENVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLIKMAE 493
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7KVV0 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4075380.1}))

HSP 1 Score: 495.738 bits (1275), Expect = 2.367e-170
Identity = 302/518 (58.30%), Postives = 353/518 (68.15%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNKTSTT---PSYATPNLAPSWQPNKPSWTHQPAPPS-QSVLPGSLGGPTSMVGDITGRSWASAAPAK-TGSNNIGVVVKNPNLFGDLVGPALGGNKGS-SNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPK--NVASSGGGGGGWGGSGGYNASGNVGLSGGKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSN-----------------------MNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGWDTE------FGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMA 478
            MNSNYGRSN++ S   FDFDLG++SN S+ LN Q N  + T   P  ATP    SWQPNKPSWTHQPA P+  S L G L GPTSMVGDITGRSWAS+AP + + ++NIG+  KNPNLF DL+G  LG  KG+ SNVPLKN+AP S        +SMGGM +SLPK  N  +S GG G    S   + + N    G K+ NLGG +MKS   SG GGGM+SNKDPFGSL++F  K A+G KS +K TS  T    D FG FQNA K +   +N S     S GSHS                        ++DF F   Q QPPVQSST +DFD+LF +S+ D      E+L  QQ +G   W  E       G G D GGTTELEGLPPPP+GVT+++AKNKGM+NYK GQ+PDAIKWLSWAV+L  K+ DN  T EVLSSRASCYKEVGEYKKAVADC+K+LE D+KNVSVLVQRALLYESMEKYKLGAEDLRTVM +DPGNRVARSTIHRLTK+A
Sbjct:    1 MNSNYGRSNQSGSLNNFDFDLGINSNRSKPLNAQNNNNTFTQPKPYTATP----SWQPNKPSWTHQPAAPAPSSTLGGPLNGPTSMVGDITGRSWASSAPQRPSSTSNIGIASKNPNLFSDLLGSNLGAGKGNNSNVPLKNVAPASSQTASRSAYSMGGMANSLPKPGNTMNSSGGTGWGSSSSQGSVNYNTSGYGNKNQNLGGSSMKSSTMSGIGGGMNSNKDPFGSLVDFSSKPASGTKSGNK-TSTPTKSGDDMFGSFQNASKDSKPNTNPSF-TGSSMGSHSQPKVDDFGFGFSNIQNPPPVQSSKLDDFVFNGKQNQPPVQSSTGNDFDILFTSSTKDS-----ENLASQQFAGAEDWGFESDIGGGGGSGGDVGGTTELEGLPPPPAGVTSSSAKNKGMDNYKAGQYPDAIKWLSWAVILLEKSGDNVATMEVLSSRASCYKEVGEYKKAVADCSKILEQDKKNVSVLVQRALLYESMEKYKLGAEDLRTVMNIDPGNRVARSTIHRLTKLA 507
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A620 ((Uncharacterized protein {ECO:0000313|EMBL:MPA50473.1}))

HSP 1 Score: 489.574 bits (1259), Expect = 2.879e-168
Identity = 296/496 (59.68%), Postives = 346/496 (69.76%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTSS---FDFDLGLSSNNSRSLNDQKNK----TSTTPSYATPNLAPSWQPNKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGSGGYNASGNVGLSGG------KSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGDGFGDFQNAPKPNVSVSNNSVPVNLSEGSHSNMNDFGFFPTQVQPPVQSSTVDDFDVLFPTSSTDGGA--KGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
            MNSNYG+S+K+ S   FDFD GL +N SRSLNDQKN+    +ST P   T     +WQPNKPSWTHQPAP SQ   PG   G TSMVGDI G++WAS+A   T ++ IG+V KNPNLFGDLV  ALG NKG++NVPLKN  P S   NKS  +SMG + DSLPK  +S              + + +   S        KS N+GGP+  SVGG    GG+SSNKDPFGS ++F  K A  M S  K  +NK +   D FGDFQNA K +   S ++   +    ++S M+DFG   ++  PPVQSS VD FDVLF +SS   GA  KG E LG QQ S    W  D+EFGG +D GGTTEL+GLPPPP+GV+AAAA NKGM+NYKQGQ+ DAIKWLSWAV+L  KA D+  T EVLS RASCYKEVGEYKKAVADCTKVLEHD  +V+VLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARS+IHRLTKMAE
Sbjct:    1 MNSNYGKSSKSVSPNNFDFDFGLGTNRSRSLNDQKNQNSSYSSTQPKPNTTTSTAAWQPNKPSWTHQPAP-SQLNRPGLPSGSTSMVGDIFGKTWASSA-PSTTTSTIGIVNKNPNLFGDLVSSALGQNKGNTNVPLKNATPAS---NKSA-YSMGNLADSLPKTSSSMKTSSSWGSSESLGSTTSSYNYSNNSNANNMKSANIGGPSTHSVGG----GGLSSNKDPFGSFVDFRSKPAVTMNSVGK-GNNKPNSQDDAFGDFQNASKSSTPASTSTAKYS----AYSKMDDFGIPTSENHPPVQSSGVDAFDVLFSSSSASAGAAPKGSEGLGSQQFSKADDWGLDSEFGG-NDTGGTTELDGLPPPPAGVSAAAANNKGMDNYKQGQYADAIKWLSWAVILLEKAGDDAATMEVLSCRASCYKEVGEYKKAVADCTKVLEHDSTSVAVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSSIHRLTKMAE 480
[Close]
BLAST of XM_017375425.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WMX8 ((uncharacterized transmembrane protein DDB_G0289901-like {ECO:0000313|RefSeq:XP_027115981.1}))

HSP 1 Score: 489.96 bits (1260), Expect = 1.590e-167
Identity = 307/552 (55.62%), Postives = 363/552 (65.76%), Query Frame = 0
 
Query:    1 MNSNYGRSNKTS----SFDFDLGLSSNNSRSLNDQKNKTSTTPSY----ATPNLAPSW--QP-NKPSWTHQPAPPSQSVLPGSLGGPTSMVGDITGRSWASAAPAKTGSNNIGVVVKNPNLFGDLVGPALGGNKGSSNVPLKNLAPVSGSGNKSGGFSMGGMKDSLPKNVASSGGGGGGWGGS---GGYNA--------SGNVGLSG--GKSTNLGGPAMKSVGGSGFGGGMSSNKDPFGSLLNFGPKKAAGMKSESKETSNKTSLVGD-GFGDFQNAPKPN-VSVSNNSVPVNLSE-------GSHSNMNDFGFFPT--------------------------------------QVQPPVQSSTVDDFDVLFPTSSTDGGAKGLEDLGGQQSSGIGGW--DTEFGGGDDKGGTTELEGLPPPPSGVTAAAAKNKGMENYKQGQFPDAIKWLSWAVVLFGKASDNNGTNEVLSSRASCYKEVGEYKKAVADCTKVLEHDEKNVSVLVQRALLYESMEKYKLGAEDLRTVMKLDPGNRVARSTIHRLTKMAE 479
            MNSNYG+SN  S    SFDFDLGL  + SRSLNDQKN+TS+  SY    A P+  PSW  QP NKPSWTHQPA P+QS   GSL GPTSMVGDI G+SW S+APA + ++  GVV K+PNLFGDL+G ALG NKG+SNVPLKN AP S   NKS  FSMGGM DSLPK   +S    G WG S   G Y +         GNV L+G   K TNLGGP++KS+ G G  GGM SNKDPFGSL++F  K +  MKSESK ++  +S VGD  F  FQ+A K + V+  + S     S        GS+SN++DFGFF T                                        +P  QS+ VD FD LF T+   G      +   Q SSG   W  +++F G  D GGTTELEGLPPPP+GV+A+ AKNKG++NYKQGQF DAIKWLSW VVL  KA D+ G  +VL+ RA+CYKEVGEYKKAVADCTK LE D+KNV++LVQRALLYESMEKYKLGAEDLR+VM++DPGNRVARSTIHRLTKMA+
Sbjct:    1 MNSNYGKSNSKSGSLNSFDFDLGLGKSGSRSLNDQKNQTSSYGSYSSAQAKPSTTPSWTHQPINKPSWTHQPAAPAQSAGTGSLSGPTSMVGDIFGKSWGSSAPASSLNSGSGVVNKDPNLFGDLLGSALGQNKGNSNVPLKNAAPAS---NKSS-FSMGGMADSLPK-TGNSTKSSGNWGSSETFGTYTSGFSSNNSDRGNVNLNGNASKGTNLGGPSVKSMAGGGGLGGMGSNKDPFGSLVDFSSKPSGNMKSESKGSA--SSKVGDDAFQSFQSASKTSGVAHPSGSFTSGKSNSTGSGAGGSYSNVDDFGFFSTPSQSQPSSFPSGNHNTAGPGAGGSFSNIDDFGFPSSQPHSRPSGQSTGVDSFDALFTTTPGSGA-----EFKSQDSSGRDDWGFESDFNG-HDTGGTTELEGLPPPPAGVSASTAKNKGLDNYKQGQFADAIKWLSWTVVLLEKAGDDTGIMDVLTCRAACYKEVGEYKKAVADCTKALEQDDKNVNILVQRALLYESMEKYKLGAEDLRSVMRIDPGNRVARSTIHRLTKMAD 539
Match NameStatsDescription
A0A5B7A0Z0E-Value: 4.346e-178, PID: 60.12(Uncharacterized protein {ECO:0000313|EMBL:MPA5047... [more]
A0A2J6MIC9E-Value: 8.172e-176, PID: 58.98(Uncharacterized protein {ECO:0000313|EMBL:PLY9918... [more]
A0A103XJ25E-Value: 6.273e-175, PID: 57.01(Tetratricopeptide-like helical {ECO:0000313|EMBL:... [more]
A0A068TS12E-Value: 4.028e-174, PID: 59.34(Uncharacterized protein {ECO:0000313|EMBL:CDO9882... [more]
A0A5N6PJ36E-Value: 2.331e-173, PID: 57.22(Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more]
A0A5N6PGX3E-Value: 7.621e-172, PID: 56.84(Uncharacterized protein {ECO:0000313|EMBL:KAD6453... [more]
A0A2R6PJR0E-Value: 2.015e-170, PID: 58.79(Sperm-associated antigen 1A like {ECO:0000313|EMB... [more]
A0A6S7KVV0E-Value: 2.367e-170, PID: 58.30(Uncharacterized protein {ECO:0000313|EMBL:CAB4075... [more]
A0A5B7A620E-Value: 2.879e-168, PID: 59.68(Uncharacterized protein {ECO:0000313|EMBL:MPA5047... [more]
A0A6P6WMX8E-Value: 1.590e-167, PID: 55.62(uncharacterized transmembrane protein DDB_G028990... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.