Resource Type:
Polypeptide
Name:
XM_017389815.1
Identifier:
XM_017389815.1-protein
Sequence:
MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQ
ITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNN
VAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHI
KVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYP
YYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNS
ISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSG
PPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSN
NSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPD
TLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNS
SSFGFSTPAFAPISPQGKSSKLQIHVVWSLALTLFITFLVVDVHIHPFCN
Sequence Length:
500
Sequence Checksum:
3eda66de98a20177bd36ff084c97a2c3
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017389815.1, derives from mRNA, XM_017389815.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YYT6 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 370/497 (74.45%), Postives = 431/497 (86.72%), Query Frame = 0
Match: A0A5B6YYT6 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 370/497 (74.45%), Postives = 431/497 (86.72%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFGFST-PAFAPISPQGKSSKLQIHVVWSLALTLFITFLVVDVHIH 496
M+ E+W+ S LL+ GM S+TIG YVG+NIGTDL+N+P SDVVAI+KA QITHVRLFDADAHML ALS+TGIEV+VGVTNEEVLGIG+S++ AAAWIN NVAAYLPS NITAIAVGSEVL+SIPNAAP+LVPAMN LHKALVASNLN +KVS PQSMDII KPFPPSTA+FNSTWNSTI Q+LQFLK T+SY+MLNAYPYYGY+N GIFPIDYALF+P+ SVKQIVDPNTLFHY+SMFDAMVDATYNSI+A N S IP+VVTESGWPW GG NEPDAT++NAETFNNNLI+RV NDSGPPSQPTIPIN YIYELFNEDK+ GP+SERNWG+FF+NGT+VY LSL+ S+ GNSS FC+A++GAD S LQ+G++WACGQGQANC+AIQ G PCY PDTLQNHAS+AYNDYYQKM +GGTCDFDGTA+T DPS+GSCIF GS NSSS + AF P+SP G SS+LQ+ + SL L +++T +++DV++
Sbjct: 1 MIPEIWLGSALLLIGMFSNTIGAYVGMNIGTDLTNVPPASDVVAILKARQITHVRLFDADAHMLNALSNTGIEVMVGVTNEEVLGIGQSSSAAAAWINKNVAAYLPSINITAIAVGSEVLTSIPNAAPILVPAMNYLHKALVASNLNYQVKVSTPQSMDIILKPFPPSTAIFNSTWNSTIFQVLQFLKNTNSYYMLNAYPYYGYVNGDGIFPIDYALFQPLPSVKQIVDPNTLFHYNSMFDAMVDATYNSIAALNFSGIPIVVTESGWPWLGGTNEPDATVENAETFNNNLIRRVLNDSGPPSQPTIPINTYIYELFNEDKRPGPVSERNWGVFFTNGTTVYSLSLSASDRITGNSSAVFCIAKQGADPSALQNGLNWACGQGQANCSAIQPGQPCYFPDTLQNHASYAYNDYYQKMHGVGGTCDFDGTAVTATADPSHGSCIFAGSLNSSSSTVAPYSAFGPVSPVGGSSRLQVPEIGSLVLAIYVTLMLLDVNVK 497
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3AXL1 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 424/493 (86.00%), Query Frame = 0
Match: A0A1Q3AXL1 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 751.895 bits (1940), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 424/493 (86.00%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFG--FSTPAFAPISPQGKSSKLQIHVVWSLALTLFITFLVV 491
M+LE W RS+LL+ G+ ++ +G +VG+NIGTD+SN+PS SDVVA++KANQITH+RL+DA+ H+L ALS++GIEVIVG+TNEEVLGIGES + AAAW+N NVA+Y+PSTNITAIAVGSEVL+SIPNAAPVLV AMN LHKALVASNLN +KVS PQSMDIIPKPFPPSTA FNS+WNST+ Q+LQFLK T+SY+MLNAYPYYGY N GIFPIDYALF+P++SVKQIVDPNTLF Y+SMFDAMVDATY SI A N S IPVVVTE+GWPW GGANEPDAT++NAETFN+NLI+RV NDSGPPSQP PIN YIYELFNEDK++GP+SE+NWG+FF+N ++VYPLSL++SN GNSSV FCVA++ ADS KLQ G++WACGQG ANC AIQ+G PCY PDT+++HAS+AYNDYYQ M+S+GGTCDF GTA TT NDPSYGSCI+TGSSN ++ G TPAF P+SP+G S KL + + SL F+ +++
Sbjct: 1 MVLEKWFRSILLLVGIFTNALGAFVGVNIGTDVSNMPSASDVVAMLKANQITHIRLYDANNHILEALSNSGIEVIVGLTNEEVLGIGESPSAAAAWVNENVASYMPSTNITAIAVGSEVLTSIPNAAPVLVTAMNYLHKALVASNLNYQVKVSTPQSMDIIPKPFPPSTATFNSSWNSTLYQVLQFLKNTNSYYMLNAYPYYGYTNGNGIFPIDYALFQPLASVKQIVDPNTLFQYNSMFDAMVDATYYSIDALNFSGIPVVVTEAGWPWLGGANEPDATIENAETFNSNLIRRVLNDSGPPSQPNTPINTYIYELFNEDKRTGPVSEKNWGIFFTNESAVYPLSLSSSNRITGNSSVVFCVAKDNADSDKLQEGLNWACGQGHANCNAIQAGQPCYNPDTVESHASYAYNDYYQNMRSVGGTCDFQGTATTTTNDPSYGSCIYTGSSNLTTGGGITPTPAFGPVSPEGGSMKLPVSELQSLIAATFLALILL 493
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TB58 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Match: A0A6P6TB58 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Query: 2 MLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFG-FSTPAFAPISPQGKSSKLQIHVVWSLALTLFITFLVVDVHI 495
ML+LW+ ++L LS G +VG NIGTDLSNLPS +DVVAI+KA+QITHVRLFDADAHMLTAL+DTGIEV+V VTNEE+LGIG++ +VAAAW+N NVAA++PSTNITAIAVGSEVL++IPNAA +LVPAMN L KALVASNLN+ IKVS PQSMD+IP+PFPPSTA FNSTWNSTI QMLQFLK T+SY+MLNAYPYYGY+N+ GIFPIDYALFRP+SSVK+IVDPNTL HYDSMFDAMVDATYNSI+AFN S IPVVVTE+GWPW GGANE DAT++NAETFNNNLI+RVSNDSGPPSQP IPIN YIYELFNEDK+ GPISERNWG+FF NG++VYP+SL +S N NSS FC+A++ ADS KLQ+G+++ACGQGQ NC+AIQ+G PCY PDTLQNHAS+AYNDYYQKM + GGTCDFDGTA TT DPSYGSC FTGSS++S G F PA P+ P + S ++ + L +F++ ++ DV I
Sbjct: 26 MLKLWLGIIILFITCLSIAAGAFVGFNIGTDLSNLPSATDVVAILKAHQITHVRLFDADAHMLTALADTGIEVMVSVTNEEILGIGQTPSVAAAWVNKNVAAFVPSTNITAIAVGSEVLTTIPNAARILVPAMNYLQKALVASNLNDQIKVSTPQSMDVIPRPFPPSTAAFNSTWNSTIFQMLQFLKNTNSYYMLNAYPYYGYVNSNGIFPIDYALFRPLSSVKEIVDPNTLLHYDSMFDAMVDATYNSIAAFNISGIPVVVTETGWPWLGGANEQDATVENAETFNNNLIRRVSNDSGPPSQPDIPINTYIYELFNEDKRPGPISERNWGIFFPNGSTVYPISLGSSVNVSTNSSGVFCIAKQDADSKKLQNGLNYACGQGQGNCSAIQTGQPCYFPDTLQNHASYAYNDYYQKMHTFGGTCDFDGTATTTSQDPSYGSCKFTGSSSTSGRGLFPPPALGPVGPSSQGSSVR-AFSFGFLLVVFLSVVMADVSI 519
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TB57 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Match: A0A6P6TB57 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Query: 2 MLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFG-FSTPAFAPISPQGKSSKLQIHVVWSLALTLFITFLVVDVHI 495
ML+LW+ ++L LS G +VG NIGTDLSNLPS +DVVAI+KA+QITHVRLFDADAHMLTAL+DTGIEV+V VTNEE+LGIG++ +VAAAW+N NVAA++PSTNITAIAVGSEVL++IPNAA +LVPAMN L KALVASNLN+ IKVS PQSMD+IP+PFPPSTA FNSTWNSTI QMLQFLK T+SY+MLNAYPYYGY+N+ GIFPIDYALFRP+SSVK+IVDPNTL HYDSMFDAMVDATYNSI+AFN S IPVVVTE+GWPW GGANE DAT++NAETFNNNLI+RVSNDSGPPSQP IPIN YIYELFNEDK+ GPISERNWG+FF NG++VYP+SL +S N NSS FC+A++ ADS KLQ+G+++ACGQGQ NC+AIQ+G PCY PDTLQNHAS+AYNDYYQKM + GGTCDFDGTA TT DPSYGSC FTGSS++S G F PA P+ P + S ++ + L +F++ ++ DV I
Sbjct: 27 MLKLWLGIIILFITCLSIAAGAFVGFNIGTDLSNLPSATDVVAILKAHQITHVRLFDADAHMLTALADTGIEVMVSVTNEEILGIGQTPSVAAAWVNKNVAAFVPSTNITAIAVGSEVLTTIPNAARILVPAMNYLQKALVASNLNDQIKVSTPQSMDVIPRPFPPSTAAFNSTWNSTIFQMLQFLKNTNSYYMLNAYPYYGYVNSNGIFPIDYALFRPLSSVKEIVDPNTLLHYDSMFDAMVDATYNSIAAFNISGIPVVVTETGWPWLGGANEQDATVENAETFNNNLIRRVSNDSGPPSQPDIPINTYIYELFNEDKRPGPISERNWGIFFPNGSTVYPISLGSSVNVSTNSSGVFCIAKQDADSKKLQNGLNYACGQGQGNCSAIQTGQPCYFPDTLQNHASYAYNDYYQKMHTFGGTCDFDGTATTTSQDPSYGSCKFTGSSSTSGRGLFPPPALGPVGPSSQGSSVR-AFSFGFLLVVFLSVVMADVSI 520
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TB75 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Match: A0A6P6TB75 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 358/495 (72.32%), Postives = 421/495 (85.05%), Query Frame = 0
Query: 2 MLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFG-FSTPAFAPISPQGKSSKLQIHVVWSLALTLFITFLVVDVHI 495
ML+LW+ ++L LS G +VG NIGTDLSNLPS +DVVAI+KA+QITHVRLFDADAHMLTAL+DTGIEV+V VTNEE+LGIG++ +VAAAW+N NVAA++PSTNITAIAVGSEVL++IPNAA +LVPAMN L KALVASNLN+ IKVS PQSMD+IP+PFPPSTA FNSTWNSTI QMLQFLK T+SY+MLNAYPYYGY+N+ GIFPIDYALFRP+SSVK+IVDPNTL HYDSMFDAMVDATYNSI+AFN S IPVVVTE+GWPW GGANE DAT++NAETFNNNLI+RVSNDSGPPSQP IPIN YIYELFNEDK+ GPISERNWG+FF NG++VYP+SL +S N NSS FC+A++ ADS KLQ+G+++ACGQGQ NC+AIQ+G PCY PDTLQNHAS+AYNDYYQKM + GGTCDFDGTA TT DPSYGSC FTGSS++S G F PA P+ P + S ++ + L +F++ ++ DV I
Sbjct: 6 MLKLWLGIIILFITCLSIAAGAFVGFNIGTDLSNLPSATDVVAILKAHQITHVRLFDADAHMLTALADTGIEVMVSVTNEEILGIGQTPSVAAAWVNKNVAAFVPSTNITAIAVGSEVLTTIPNAARILVPAMNYLQKALVASNLNDQIKVSTPQSMDVIPRPFPPSTAAFNSTWNSTIFQMLQFLKNTNSYYMLNAYPYYGYVNSNGIFPIDYALFRPLSSVKEIVDPNTLLHYDSMFDAMVDATYNSIAAFNISGIPVVVTETGWPWLGGANEQDATVENAETFNNNLIRRVSNDSGPPSQPDIPINTYIYELFNEDKRPGPISERNWGIFFPNGSTVYPISLGSSVNVSTNSSGVFCIAKQDADSKKLQNGLNYACGQGQGNCSAIQTGQPCYFPDTLQNHASYAYNDYYQKMHTFGGTCDFDGTATTTSQDPSYGSCKFTGSSSTSGRGLFPPPALGPVGPSSQGSSVR-AFSFGFLLVVFLSVVMADVSI 499
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7FPI2 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 368/492 (74.80%), Postives = 425/492 (86.38%), Query Frame = 0
Match: A0A7J7FPI2 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 368/492 (74.80%), Postives = 425/492 (86.38%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGM---LSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFGFSTP--AFAPISP-QGKSSKLQIHVVWSLALTLFI 486
MM ++ I SV+L+ + ++ G +VGIN+GTD+SNLP+ SDVVAI+KANQITHVRLFDADAH+L +LS+TGIEV+VGVTNEEVLGIGES++ AAAW+N NVAAYLPSTNITAIAVGSEVL+SIPNAAP+LVPAMN LHKALVA+NLN IKVS PQSMDII KPFPPSTA FNSTWNSTI Q+LQFL+ T+SY+MLNAYPYYGYIN GIFPIDYALF+P+SSVKQIVDPNTLFHYDSM +AMVDATYNSI+ +N S IP+VVTESGWPW GG NEPDAT++NAETFNNNLIQRV N SGPPSQPTIPIN YIYEL NEDK+ GP+SERNWGLFF NG++VY LSL+TS GNSS AFC+A++G DSSKL++G++WACGQG ANC+AIQ G PCY PD +QNHAS+AYNDYYQK+ S+GGTCDFDGTA TT DPS+GSCIFTGSSNSSS G +TP AF PI P G+SS+LQI + SL L +FI
Sbjct: 1 MMPQICIGSVVLVLLIDMFCNAASGAFVGINVGTDVSNLPAASDVVAILKANQITHVRLFDADAHLLNSLSNTGIEVMVGVTNEEVLGIGESSSAAAAWVNKNVAAYLPSTNITAIAVGSEVLTSIPNAAPILVPAMNYLHKALVAANLNYQIKVSTPQSMDIISKPFPPSTATFNSTWNSTIFQILQFLRNTNSYYMLNAYPYYGYINANGIFPIDYALFQPLSSVKQIVDPNTLFHYDSMLEAMVDATYNSIAGYNFSAIPIVVTESGWPWLGGTNEPDATIENAETFNNNLIQRVLNGSGPPSQPTIPINTYIYELLNEDKRPGPVSERNWGLFFVNGSAVYSLSLSTSERIAGNSSSAFCIAKQGVDSSKLENGLNWACGQGHANCSAIQPGKPCYYPDNIQNHASYAYNDYYQKLHSVGGTCDFDGTATTTTADPSHGSCIFTGSSNSSSSGVTTPTAAFGPIPPFTGESSRLQILEIGSLILAIFI 492
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251J4X0 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0
Identity = 354/475 (74.53%), Postives = 407/475 (85.68%), Query Frame = 0
Match: A0A251J4X0 ((1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA:ARBA00020943} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}) (Beta-1,3-endoglucanase {ECO:0000256|ARBA:ARBA00013986}))
HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0
Identity = 354/475 (74.53%), Postives = 407/475 (85.68%), Query Frame = 0
Query: 1 MMLELWIRSVLLMF-GMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFG--FSTPAFAPISPQGKSSKL 472
M+L+ W S+LL+ G S+ +G ++GINIGTD+SN+PS SDVVA++KANQITHVRL+DADAH+L L+++GIEV+VG+TNEEVLGIGES A AAAWIN NVA+Y+PSTNITAIAVGSEVL+SIPNAA VLVPAMN LHKALVASNLN +KVS PQSMD+IPKPFPPSTA FNSTWNSTI Q+LQFLK T+SY+MLNAYPYYGY GIFPIDYALFRP+ SVKQIVDPNTL HY+SMFDAMVDATY +I AFN S IPV+VTESGWPW GGANEPDAT++NAETFNNNLI RV N+SGPPSQPTIPIN YIYELFNEDK+ GP+SE+NWGLFF NG++VY LSL+TSN NSSV +C A+ ADS+KLQ G++WACGQG ANC AIQ G+PCYLP+T Q+HAS+AYNDY+QKM+ GGTCDFDGTAMTT DPSYGSCIFTGSSN S+ G F + PISPQG SS L
Sbjct: 1 MVLKKWFGSLLLLIVGTFSNAVGAFLGINIGTDVSNMPSASDVVAMLKANQITHVRLYDADAHLLKDLANSGIEVMVGITNEEVLGIGESPAAAAAWINKNVASYMPSTNITAIAVGSEVLTSIPNAAAVLVPAMNYLHKALVASNLNFQVKVSTPQSMDVIPKPFPPSTATFNSTWNSTIYQVLQFLKNTNSYYMLNAYPYYGYTTGNGIFPIDYALFRPLPSVKQIVDPNTLSHYNSMFDAMVDATYYAIDAFNISGIPVIVTESGWPWVGGANEPDATVENAETFNNNLILRVLNNSGPPSQPTIPINTYIYELFNEDKRPGPVSEKNWGLFFPNGSAVYTLSLSTSNRITKNSSVTYCAAKPNADSAKLQEGLNWACGQGGANCIAIQQGHPCYLPNTYQSHASYAYNDYFQKMRGAGGTCDFDGTAMTTTVDPSYGSCIFTGSSNLSTSGGIFPPVSLGPISPQGGSSSL 475
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1KBY5 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 340/479 (70.98%), Postives = 410/479 (85.59%), Query Frame = 0
Match: A0A2U1KBY5 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 732.25 bits (1889), Expect = 0.000e+0
Identity = 340/479 (70.98%), Postives = 410/479 (85.59%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFGFSTPAFAPISPQGKSSKLQIHVVWS 479
M E+ + +LLM+G S+ +GGYVGINIGTDLS+LPS VVAI++++QITH+RLFDAD H+L+ALSDTGIEV+V VTNEEVL IG+S A AA+WIN N+ A++PSTNIT+IAVGSEVLS IPN APVLV AM NLHKALV+SN+NN +K+S P SMDIIPKPFPPSTA FN+TWN+TI+++L FL+ T+S+FMLNAYPYYGY+ + GIFPI+YALF+P+S VKQIVDPNTLFHYDSMFDAMVDA YNSI+AFN S+IP+VVTE+GWPW GGANE DAT+DNAE FNNNLI+RV NDSGPPSQPT+P+NAYIYELFNEDKK GP+SER++G++FSNGTSVY +L TS ++ N+S FCVAR+GAD+ LQ G++WACG GQANC+AIQSG PC++PDTL+NHASFAYNDYYQ+M+S+G TCDF GTA+TT DPSYGSCIFTGS+NSSS G PAF P P G S Q+ +WS
Sbjct: 1 MRFEMLLGYILLMYGSFSAALGGYVGINIGTDLSDLPSPEQVVAILRSHQITHIRLFDADNHLLSALSDTGIEVMVSVTNEEVLRIGQSPAAAASWINRNIVAFVPSTNITSIAVGSEVLSVIPNVAPVLVSAMQNLHKALVSSNINNGVKISTPVSMDIIPKPFPPSTATFNATWNTTITELLTFLRRTNSFFMLNAYPYYGYVQSNGIFPIEYALFQPLSPVKQIVDPNTLFHYDSMFDAMVDAAYNSIAAFNGSVIPIVVTETGWPWAGGANERDATVDNAEKFNNNLIKRVMNDSGPPSQPTVPMNAYIYELFNEDKKPGPLSERSYGVYFSNGTSVYTFNLGTSGDATVNASGGFCVARKGADAGSLQDGLNWACGPGQANCSAIQSGQPCFMPDTLENHASFAYNDYYQRMRSVGATCDFSGTAVTTMVDPSYGSCIFTGSTNSSSGGLVPPAFGPEGPPGNISPRQLPKIWS 479
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2FJE1 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 416/493 (84.38%), Query Frame = 0
Match: A0A5D2FJE1 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 416/493 (84.38%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFGFSTP--AFAPISPQGKSSKLQIHVVWSL--ALTLFITFL 489
M+LE + S+LL+ MLS+ +G +VG+NIGTD+S++P SDVVAI+KA+QITH+RL+DAD HML AL+ +GIEV VGVTNEEVLGIGESA+ AAAWIN NVAAY+PSTNITAIAVGSEVL+S+P+AAPVLV AMNNLHKALVA++LN +KVS PQSMDIIPKPFPPSTA FNS+WNSTI Q+LQFLK T+SY+MLNAYPYYGY N GIFPIDYALF+P+ SVKQIVDPNTLFHY+SMFDAMVDATY S+ A N S+IP+VVTE+GWPW GG+NEPDAT++NAETF N LIQRVSN+SGPPSQPTIPIN YIYELFNEDK+ GPISE+NWGL F+NGT+V+PLSL + GNS+ FCVA++ A KL+ G++WACGQGQANC+AIQSG PCYLP+ ++NHAS+AYNDYYQKM ++GGTCDFDGTA TT DPSYGSCIFTGSSNSS+ S P A PISP G S+KL + + L A L + L
Sbjct: 1 MILERCLGSMLLVLSMLSNVLGAFVGVNIGTDVSSMPPASDVVAIVKAHQITHIRLYDADPHMLKALAGSGIEVTVGVTNEEVLGIGESASAAAAWINKNVAAYMPSTNITAIAVGSEVLTSVPHAAPVLVTAMNNLHKALVAADLNFQVKVSTPQSMDIIPKPFPPSTATFNSSWNSTIYQLLQFLKNTNSYYMLNAYPYYGYTNGNGIFPIDYALFKPLPSVKQIVDPNTLFHYNSMFDAMVDATYYSMDALNFSVIPIVVTETGWPWQGGSNEPDATVENAETFINKLIQRVSNNSGPPSQPTIPINTYIYELFNEDKRPGPISEKNWGLLFTNGTAVFPLSLGGPSQITGNSTAVFCVAKDDASEDKLRDGLNWACGQGQANCSAIQSGQPCYLPNNIKNHASYAYNDYYQKMHTVGGTCDFDGTATTTTIDPSYGSCIFTGSSNSSTGRESLPPTALGPISP-GGSTKLPLSKIQFLISATCLLVVLL 492
BLAST of XM_017389815.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5UQ39 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 416/493 (84.38%), Query Frame = 0
Match: A0A5J5UQ39 (Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|ARBA:ARBA00012780} (3.2.1.39 {ECO:0000256|ARBA:ARBA00012780}))
HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 352/493 (71.40%), Postives = 416/493 (84.38%), Query Frame = 0
Query: 1 MMLELWIRSVLLMFGMLSSTIGGYVGINIGTDLSNLPSTSDVVAIIKANQITHVRLFDADAHMLTALSDTGIEVIVGVTNEEVLGIGESAAVAAAWINNNVAAYLPSTNITAIAVGSEVLSSIPNAAPVLVPAMNNLHKALVASNLNNHIKVSAPQSMDIIPKPFPPSTAMFNSTWNSTISQMLQFLKTTDSYFMLNAYPYYGYINNGGIFPIDYALFRPMSSVKQIVDPNTLFHYDSMFDAMVDATYNSISAFNSSIIPVVVTESGWPWFGGANEPDATMDNAETFNNNLIQRVSNDSGPPSQPTIPINAYIYELFNEDKKSGPISERNWGLFFSNGTSVYPLSLTTSNNSVGNSSVAFCVAREGADSSKLQSGVSWACGQGQANCTAIQSGNPCYLPDTLQNHASFAYNDYYQKMKSIGGTCDFDGTAMTTKNDPSYGSCIFTGSSNSSSFGFSTP--AFAPISPQGKSSKLQIHVVWSL--ALTLFITFL 489
M+LE + S+LL+ MLS+ +G +VG+NIGTD+S++P SDVVAI+KA+QITH+RL+DAD HML AL+ +GIEV VGVTNEEVLGIGESA+ AAAWIN NVAAY+PSTNITAIAVGSEVL+S+P+AAPVLV AMNNLHKALVA++LN +KVS PQSMDIIPKPFPPSTA FNS+WNSTI Q+LQFLK T+SY+MLNAYPYYGY N GIFPIDYALF+P+ SVKQIVDPNTLFHY+SMFDAMVDATY S+ A N S+IP+VVTE+GWPW GG+NEPDAT++NAETF N LIQRVSN+SGPPSQPTIPIN YIYELFNEDK+ GPISE+NWGL F+NGT+V+PLSL + GNS+ FCVA++ A KL+ G++WACGQGQANC+AIQSG PCYLP+ ++NHAS+AYNDYYQKM ++GGTCDFDGTA TT DPSYGSCIFTGSSNSS+ S P A PISP G S+KL + + L A L + L
Sbjct: 1 MILERCLGSMLLVLSMLSNVLGAFVGVNIGTDVSSMPPASDVVAIVKAHQITHIRLYDADPHMLKALAGSGIEVTVGVTNEEVLGIGESASAAAAWINKNVAAYMPSTNITAIAVGSEVLTSVPHAAPVLVTAMNNLHKALVAADLNFQVKVSTPQSMDIIPKPFPPSTATFNSSWNSTIYQLLQFLKNTNSYYMLNAYPYYGYTNGNGIFPIDYALFKPLPSVKQIVDPNTLFHYNSMFDAMVDATYYSMDALNFSVIPIVVTETGWPWQGGSNEPDATVENAETFINKLIQRVSNNSGPPSQPTIPINTYIYELFNEDKRPGPISEKNWGLLFTNGTAVFPLSLGGPSQITGNSTAVFCVAKDDASEDKLRDGLNWACGQGQANCSAIQSGQPCYLPNNIKNHASYAYNDYYQKMHTVGGTCDFDGTATTTTIDPSYGSCIFTGSSNSSTGRESLPPTALGPISP-GGSTKLPLSKIQFLISATCLLVVLL 492
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YYT6 | E-Value: 0.000e+0, PID: 74.45 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A1Q3AXL1 | E-Value: 0.000e+0, PID: 71.40 | (1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA... [more] |
| A0A6P6TB58 | E-Value: 0.000e+0, PID: 72.32 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A6P6TB57 | E-Value: 0.000e+0, PID: 72.32 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A6P6TB75 | E-Value: 0.000e+0, PID: 72.32 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A7J7FPI2 | E-Value: 0.000e+0, PID: 74.80 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A251J4X0 | E-Value: 0.000e+0, PID: 74.53 | (1->3)-beta-glucan endohydrolase {ECO:0000256|ARBA... [more] |
| A0A2U1KBY5 | E-Value: 0.000e+0, PID: 70.98 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A5D2FJE1 | E-Value: 0.000e+0, PID: 71.40 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
| A0A5J5UQ39 | E-Value: 0.000e+0, PID: 71.40 | Glucan endo-1,3-beta-D-glucosidase {ECO:0000256|AR... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |