XM_017375246.1

Resource Type: 
Polypeptide
Name: 
XM_017375246.1
Identifier: 
XM_017375246.1-protein
Sequence: 
MGRFNWEIFGQVLVGLMSTLVVCQGFTDPRDVAAINNLYGALGTPPLIGW
VQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQID
LGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNN
HLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQL
TGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSS
PPASPPSAPPIGSPPSEQVPRIRPNEPSNPETSSSSKGENFLSKRIVWIV
VAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHE
TSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDV
AEVARHRDEHEIDMPVSDEYILPPPPLPPLNNPFEKVIIRPNVPPVRSRK
QSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLA
VKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYE
YCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVH
QNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNY
TCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSR
MVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGRA
RTRDDI
Sequence Length: 
756
Sequence Checksum: 
c08da3ad042cd1cb560c5f904276f42f
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017375246.1, derives from mRNA, XM_017375246.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSE8 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 503/758 (66.36%), Postives = 585/758 (77.18%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLV--VCQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGSPPS------EQVPRIRPNEPSNPETSSSSKGENFLSK-RIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLKTSH-NENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEHEIDMPVSDEYIL-PPPPLPPLNNPFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMV 747
            M  F WEI+ ++ +GLM      +C GFTDPRDV AIN+LY ALG PPL GWV  GGDPC EGWQGV CVNANIT I L+GANLGG LG +L  FASIIQI+L NNHIGGIIPSN P T R   LSGNQFTG+IP+T S+L QL+DMS S+NHLTG IPD FQQLTGLINLDLSGNNL GQLPPSLGNLLSLT LHLQ+NQLTGTL+VLQDLPL DL+VENNLFSGP+PDKLL IPNFRR GNPFNTT++ +PPA PPS     SP S      E     + N PS PET +S++G   L+  R+ WI +AG +I IV ALGL L MSRCCKGR  T K  KRHEM  H+ P EKP+H   LLK S+  E   K+   +  V   +   +  S++  + E    +    VA +++ +++HEIDM   D  IL PPP  P    P EKV + P VPP  +R  S + L+SVR+F+IASLQQYTNSFSQENL+G G LGTVYR+E+P GKLLA+KKL  AAS+ Q+D+DFLE VS VS+LQH NIV+L+G+C EHGQ+LLVY+YC NGT++EALH+DDEIHK LSWN R+RLAL +ARALEYLHE CQPPIVH+NF SAN+LLDD  AVRVSDCGLAPLISS+  +Q QG GYGAPELE+G+YT QSDVYSFGVVMLELLTGRK+YDRS PRGEQFL+RWA PQLHDIDALS+MVDPSL G YPSKSLSR ADIISLCVQPEPEFRPPMSEIV++L HM+
Sbjct:    1 MYCFYWEIYVRIFMGLMVIFAPPICHGFTDPRDVFAINSLYAALGFPPLPGWVPIGGDPCAEGWQGVLCVNANITGIVLSGANLGGQLGNNLESFASIIQIELSNNHIGGIIPSNFPVTIRSFFLSGNQFTGSIPDTLSSLSQLSDMSFSDNHLTGEIPDAFQQLTGLINLDLSGNNLNGQLPPSLGNLLSLTTLHLQNNQLTGTLNVLQDLPLRDLNVENNLFSGPIPDKLLSIPNFRRDGNPFNTTIIPTPPAIPPSPSSPSSPSSSRAPSPEVTSGTQANGPSVPETPNSARGGKVLTTTRVTWIAIAGFLIFIVFALGLWLFMSRCCKGRQATNKFSKRHEMVAHNDPKEKPEHNEFLLKPSNFTEKVPKEAVLRPAVGYEI--DHGTSSLRLKPEAERETDFKRVAAISKQKEDHEIDMTGMDVNILQPPPSPPTSLLPVEKVNVNPIVPPKTTRGHSTKCLNSVRSFTIASLQQYTNSFSQENLIGRGMLGTVYRAEVPSGKLLAIKKLGTAASRQQSDEDFLELVSSVSKLQHANIVELLGYCGEHGQQLLVYQYCNNGTLHEALHLDDEIHKKLSWNTRIRLALGAARALEYLHEGCQPPIVHRNFKSANILLDDELAVRVSDCGLAPLISSSSASQLQGYGYGAPELELGSYTYQSDVYSFGVVMLELLTGRKSYDRSRPRGEQFLIRWAIPQLHDIDALSKMVDPSLNGVYPSKSLSRFADIISLCVQPEPEFRPPMSEIVQNLLHMI 756    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GSI3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 907.516 bits (2344), Expect = 0.000e+0
Identity = 471/782 (60.23%), Postives = 566/782 (72.38%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLVV--CQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVL--------------SSPPASPPSAPPIGSPPSEQVPRIRPNEPSNPETSSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLK-TSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQND---VAEVARHRDEHEIDMPVSDEYILPP--PPLPPLNNPFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISS-------------NYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMV 747
            MG   WE +  + +GLM+  +V  C+G TDPRDV AIN+LY ALG P L GW+  GGDPC +GWQGV+CVNANIT I L GANLGG LG  LG F+SIIQIDL NNHIGG IPSNLP T R   LSGNQFTG+IPE  S LGQLTD+S ++NHLTG IPD FQQL GLINLDLSGNNL GQLPPS+GNL SLT LHLQ+NQL G LDVLQDLPL DL++ENNLFSGP+PDKLL IPNFRR GNPFNTTV+              +  PA  P  P  G    +  P+  P  P++   + SS      +KR+ WI + GLVIVIV+A+GLC CMSR CKG    +K  K HEM  ++   EKP++  SL K  S  E   K+            K +E S++  +++    ++Q D   +A + + ++ HEIDM   DE I+    PP PP   P +K+   P +PP    ++  + L+SVR+F+IASLQQYTNSFSQENL+GGG LGTVYR+ +P GKLLAVKKLD  A + Q+++DFLE V  VS+L+H N+V+LVG+C EHGQ+LLVYEYC NGT++EALH+DDEIH+ LSWN R+RLAL +ARALEYLHEVCQPPIVH+NF SAN+LLDD  AV VSDCGLAPLIS              +   Q  G+GYGAPELE+G+Y+ +SDVYSFGVVMLE+LTGRK+YDRS PRGEQFLVRWA P+LHDIDALSRMVDPSL G YPSKSLSR ADIISLC+QPEPEFRPPMSEIV++L HM+
Sbjct:    1 MGCIIWERYVWIFLGLMTIFLVPMCRGTTDPRDVFAINSLYAALGFPILPGWMPFGGDPCADGWQGVECVNANITGIVLTGANLGGELGNDLGNFSSIIQIDLSNNHIGGSIPSNLPITIRTFFLSGNQFTGSIPENLSALGQLTDLSFNDNHLTGEIPDAFQQLMGLINLDLSGNNLSGQLPPSMGNLSSLTTLHLQNNQLVGVLDVLQDLPLTDLNIENNLFSGPIPDKLLNIPNFRRDGNPFNTTVIPSPPALSPLPSSSVAPSPALTPGIPAFGPSAPKITPKPAPKAPNSVTGAKSST-----TKRVTWIAIGGLVIVIVLAIGLCFCMSRYCKGSQSVRKFAKNHEMGAYNDSNEKPRNNESLPKLYSPIEKGHKEAGLILRPPVRYGKDHERSSLWLQSD----TEQEDNKRMAAIPKKKEYHEIDMSGLDEDIMSSPRPPPPPPFLPVDKITANPILPPGPMSRRFNKTLNSVRSFTIASLQQYTNSFSQENLIGGGILGTVYRAVIPTGKLLAVKKLDTTACRKQSNEDFLELVFSVSKLKHANVVELVGYCAEHGQQLLVYEYCKNGTLHEALHLDDEIHRQLSWNTRIRLALGAARALEYLHEVCQPPIVHKNFKSANILLDDELAVHVSDCGLAPLISRVSESQLFLDGVDISAFYQLSGNGYGAPELELGSYSSKSDVYSFGVVMLEILTGRKSYDRSRPRGEQFLVRWAIPRLHDIDALSRMVDPSLNGAYPSKSLSRFADIISLCLQPEPEFRPPMSEIVQNLLHMI 773    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RAT3 ((Protein STRUBBELIG-RECEPTOR FAMILY 3 like {ECO:0000313|EMBL:PSS24670.1}))

HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 466/752 (61.97%), Postives = 560/752 (74.47%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLVV--CQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGSPPSEQV-PRIRPNEPSNPE-TSSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLKTSH-NENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNPFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMV 747
            MG  N      + +GL+    V  C G TDPRDV AIN+LY ALG P L GWV  GGDPC +GWQGVQCVNAN+T I LN  NLGG L + LG FASIIQID+ NNHIGG IPSNLP T R L L+GNQFTG+IP+T STLGQL+D+S S NHLTG IPD FQ L GLI+LDLSGN+L GQLPPS+GNL SLT LHLQ+NQLTGTL+VLQDLPL DL++ENN FSGP+PDKLL +PNFRR GNPFNTTV+ SPPA  P   P+   PS ++ P IR   PS P  T+SS  G++  +K++  I + GL+I+IV+ALGLCL MSRC KG     K+ KRHEM  ++   EKPK++    K     E   KDT  K  V         +       E  G+   N +A +++H+++HEIDM   D  ILPPPP PP  +     I    + P+ S +   + L S+R+F+IASLQQYTNSFSQEN +GGG LG+VYR+E+P  KLLAVKKL+ AA +  +++DFL+ VS +S+LQH N+V+LVG+C EHG +LLVYEYCGNGT++EALH+DDEIHK LSWN R+RLAL +ARALEYLHEVC PPIVHQNF SAN+LLDD     VSDCGLA L+SS  + Q  G+GYGAPELE+G+YT +SDV+SFGVVMLE+LTGRK+YDRS PRGEQFLVRWA PQLHDID+LSRMVDPSL G YPSKSLSR ADIISLC+QPEPEFRPPMSEIV++L HM+
Sbjct:    8 MGFINRVRRVSIFLGLILVFSVPICHGTTDPRDVNAINSLYAALGFPILPGWVPVGGDPCADGWQGVQCVNANVTGIVLNDVNLGGQLNDDLGQFASIIQIDMSNNHIGGSIPSNLPVTIRSLFLAGNQFTGSIPDTLSTLGQLSDLSFSGNHLTGEIPDAFQPLAGLISLDLSGNSLSGQLPPSMGNLSSLTTLHLQNNQLTGTLNVLQDLPLRDLNIENNQFSGPIPDKLLNVPNFRRGGNPFNTTVIPSPPAFSPL--PLSMAPSPKLTPGIRAFGPSVPTITNSSPGGKSLTTKKVTLIAIGGLLILIVLALGLCLLMSRCWKGSQPASKMAKRHEMGAYNDHKEKPKNDEPFPKLYFPTEKGHKDTGFKPAVRFGNDHERSSLRFKPEAEQEGI---NRMAAISKHKEDHEIDMTGLDVDILPPPPPPPFFS-----IDEVTMTPILSPRLPTKTLKSIRSFTIASLQQYTNSFSQENFIGGGMLGSVYRAEIPTEKLLAVKKLNTAACRKYSNEDFLDLVSSISKLQHPNVVELVGYCAEHGLQLLVYEYCGNGTLHEALHLDDEIHKKLSWNTRIRLALGAARALEYLHEVCNPPIVHQNFKSANILLDDELEACVSDCGLARLLSSVSLNQLSGNGYGAPELELGSYTSKSDVFSFGVVMLEILTGRKSYDRSQPRGEQFLVRWAIPQLHDIDSLSRMVDPSLNGAYPSKSLSRFADIISLCLQPEPEFRPPMSEIVQNLLHMI 749    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QLK7 ((Protein STRUBBELIG-RECEPTOR FAMILY 3 like {ECO:0000313|EMBL:PSS10271.1}))

HSP 1 Score: 880.937 bits (2275), Expect = 0.000e+0
Identity = 460/751 (61.25%), Postives = 555/751 (73.90%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLVV--CQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGSPPSEQVPRIRPNEPSNPE-TSSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLK-TSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNPFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMV 747
            MG  N E    + +GL+   +V  C G TDP DV AIN+LY ALG P L GWV  GGDPC +GWQGVQCVNANIT I LN ANLGG L + LG F SIIQID+ NNHIGG IP NLP T R   L+GNQF+G+IP++ STLGQL+D+S   NHL G IPD FQ L GLINLD SGN+L GQLPPSLGNL SLT LHLQ+NQLTGTL+VLQDLPL DL++ENN FSGP+PDKLL +PNFRR GNPFNTTV+ SPPA  P   P+ +P  E  P  R   PS P  T+SS+ G++   K++  I + GL+I++V+ALGLCL MSRC KG     K+ KR+ M  ++ P EKPK++    K     E   K+   K     AV   N+  +  R    A     N +A +++H ++HEIDM   D  ILPPPPLP  +   ++V + P + P    K     L+S+R+F+IASLQQ+TNSFSQENL+GGG LGTVYR+++P GKLL VKKLD A  +  +++DFL+ VS +S+LQH N+V+L+G+C EHGQ+LLVYEYCGNGT++EALH+DDEIHK LSWN R+RLAL +ARALEYLHEVC PPIVHQNF SAN+LLDD     VSDCGLA L+SS  + Q  G+GYGAPELE G+YT +SDV+SFGVVMLE+LTGRK+YDRS PRGEQFLVRWA PQLHDID+LSRMVDPSL G YPSKSLSR ADIISLC+QPEPEFRPPMSEIV+ L HM+
Sbjct:    8 MGVINRERSVSIFLGLIIVFLVPICHGTTDPLDVNAINSLYAALGFPILPGWVPVGGDPCADGWQGVQCVNANITGIVLNDANLGGQLNDDLGQFTSIIQIDMSNNHIGGSIPFNLPVTIRSFFLTGNQFSGSIPDSLSTLGQLSDLSFGGNHLNGEIPDAFQPLVGLINLDFSGNSLSGQLPPSLGNLSSLTTLHLQNNQLTGTLNVLQDLPLRDLNIENNQFSGPIPDKLLTVPNFRRGGNPFNTTVIPSPPAFSPLPSPM-APSPEVTPGNRAFGPSVPMITNSSTGGKSLTMKKVTLIAIGGLLILVVLALGLCLLMSRCWKGSQPASKIAKRNGMGAYNDPKEKPKNDEPFPKLYCPTEKGHKEAGFK----PAVRFGNDHESSLRFKPEAEQEGINRMAAISKHMEDHEIDMTGLDVNILPPPPLPFFS--IDEVTMTPILSPCLPTK----PLNSIRSFTIASLQQHTNSFSQENLIGGGMLGTVYRAKIPTGKLLVVKKLDTATCRKHSNEDFLDLVSSISKLQHPNVVELMGYCAEHGQQLLVYEYCGNGTLHEALHLDDEIHKKLSWNTRIRLALGAARALEYLHEVCNPPIVHQNFKSANILLDDELEAHVSDCGLARLLSSVSLNQLSGNGYGAPELESGSYTSKSDVFSFGVVMLEILTGRKSYDRSRPRGEQFLVRWAIPQLHDIDSLSRMVDPSLNGVYPSKSLSRFADIISLCLQPEPEFRPPMSEIVQSLLHMI 747    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BAQ5 ((protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 {ECO:0000313|RefSeq:XP_010278322.1, ECO:0000313|RefSeq:XP_010278323.1}))

HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 452/763 (59.24%), Postives = 553/763 (72.48%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLV--VCQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGS--PPSEQVPRIRPNEP-SNPET-SSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNPFEKVI---IRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGS-----GYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGR 749
            M  F WE + +V  G++      V  G+T P DV+AIN+LY ALG+PPL GW+  GGDPC E WQGVQC ++NITAI LNGANLGG LGE+LG F SI  IDL NNHIGG IPSNLP T +   LS NQFTG+IP + ++L QLTDMSL+NNHLTG IPD FQ LTGLIN+DLS NNL GQLPPS+ NL SLT LHLQDNQL+GTLDVLQDLPL DL++ENNLFSGP+PDKLLGIPNF++ GNPFNTTV  +P   P S PP  S  PPSE+    +   P S P+   S+   +   +KR++WI + G++I I++ L L L  S+CCK R       KRHE  +     E  + ET  +   +N+  +    P+ E    + +     AVP+  + +  S    + E++  +++HEID+   D  +     +PP   P EKVI   I P    +R   +SM  ++SV +F+IASLQQYTNSFSQENL+GGG LG  YR+ELPDGKLLAVKKLD AAS+ QTD++FLE VS +S+L+H N+++L G+C EHGQ+LL+YEYC NGT+++ALH DDEI++ LSWNAR+++AL +ARALEYLHEVCQPPIVH+NF SAN+LLDD   VRVSDCGL+PLISS  V+Q  G      GYGAPE E G YT QSDVYSFGVVMLELLTGRK+YDRS PRGEQ L RWA  QLHDIDALSRMVDPSL G YP+KSLSR ADIISLC+QPEPEFRPPMSEIV++L HM+ R
Sbjct:    1 MDHFIWETYARVFFGMIVIFSAPVSDGYTIPSDVSAINSLYTALGSPPLPGWIANGGDPCLEAWQGVQCADSNITAIILNGANLGGELGENLGSFVSIASIDLSNNHIGGSIPSNLPLTMKNFFLSDNQFTGSIPSSLASLTQLTDMSLNNNHLTGEIPDAFQSLTGLINMDLSSNNLSGQLPPSMENLSSLTTLHLQDNQLSGTLDVLQDLPLRDLNIENNLFSGPIPDKLLGIPNFKKDGNPFNTTV--APSHQPASRPPHVSRAPPSEEARGKQAKGPTSAPQGPDSTKTKKFLTTKRVIWISITGVLIFIIIVLALALLASKCCKEREEADIFSKRHE--IISTYKETKEKETQSMDWPNNQMEKAVLRPRDEHGIDIGR---LGAVPKAKDNSK-SDIKRMGELSNLKEDHEIDVSGIDMVL-----MPPPPPPAEKVIVNTILPTATTLRPPLKSMNPIASVSSFTIASLQQYTNSFSQENLIGGGMLGNAYRAELPDGKLLAVKKLDNAASRRQTDEEFLELVSSISKLKHANVIKLEGYCAEHGQKLLIYEYCSNGTLHDALHSDDEINRKLSWNARIQMALGAARALEYLHEVCQPPIVHRNFKSANILLDDELVVRVSDCGLSPLISSGAVSQLSGQLLSAYGYGAPEFESGTYTYQSDVYSFGVVMLELLTGRKSYDRSRPRGEQHLARWAITQLHDIDALSRMVDPSLNGVYPAKSLSRFADIISLCIQPEPEFRPPMSEIVQNLLHMIQR 750    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8BED2 ((protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X2 {ECO:0000313|RefSeq:XP_010278328.1}))

HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 453/763 (59.37%), Postives = 554/763 (72.61%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLV--VCQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGS--PPSEQVPRIRPNEP-SNPET-SSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNPFEKVI---IRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGS-----GYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGR 749
            M  F WE + +V  G++      V  G+T P DV+AIN+LY ALG+PPL GW+  GGDPC E WQGVQC ++NITAI LNGANLGG LGE+LG F SI  IDL NNHIGG IPSNLP T +   LS NQFTG+IP + ++L QLTDMSL+NNHLTG IPD FQ LTGLIN+DLS NNL GQLPPS+ NL SLT LHLQDNQL+GTLDVLQDLPL DL++ENNLFSGP+PDKLLGIPNF++ GNPFNTTV  +P   P S PP  S  PPSE+    +   P S P+   S+   +   +KR++WI + G++I I++ L L L  S+CCK R       KRHE  +     E  + ET  +   +N+  +K   P+ E    + +     AVP+  + +  S    + E++  +++HEID+   D  +     +PP   P EKVI   I P    +R   +SM  ++SV +F+IASLQQYTNSFSQENL+GGG LG  YR+ELPDGKLLAVKKLD AAS+ QTD++FLE VS +S+L+H N+++L G+C EHGQ+LL+YEYC NGT+++ALH DDEI++ LSWNAR+++AL +ARALEYLHEVCQPPIVH+NF SAN+LLDD   VRVSDCGL+PLISS  V+Q  G      GYGAPE E G YT QSDVYSFGVVMLELLTGRK+YDRS PRGEQ L RWA  QLHDIDALSRMVDPSL G YP+KSLSR ADIISLC+QPEPEFRPPMSEIV++L HM+ R
Sbjct:    1 MDHFIWETYARVFFGMIVIFSAPVSDGYTIPSDVSAINSLYTALGSPPLPGWIANGGDPCLEAWQGVQCADSNITAIILNGANLGGELGENLGSFVSIASIDLSNNHIGGSIPSNLPLTMKNFFLSDNQFTGSIPSSLASLTQLTDMSLNNNHLTGEIPDAFQSLTGLINMDLSSNNLSGQLPPSMENLSSLTTLHLQDNQLSGTLDVLQDLPLRDLNIENNLFSGPIPDKLLGIPNFKKDGNPFNTTV--APSHQPASRPPHVSRAPPSEEARGKQAKGPTSAPQGPDSTKTKKFLTTKRVIWISITGVLIFIIIVLALALLASKCCKEREEADIFSKRHE--IISTYKETKEKETQSMDWPNNQ-MEKVLRPRDEHGIDIGR---LGAVPKAKDNSK-SDIKRMGELSNLKEDHEIDVSGIDMVL-----MPPPPPPAEKVIVNTILPTATTLRPPLKSMNPIASVSSFTIASLQQYTNSFSQENLIGGGMLGNAYRAELPDGKLLAVKKLDNAASRRQTDEEFLELVSSISKLKHANVIKLEGYCAEHGQKLLIYEYCSNGTLHDALHSDDEINRKLSWNARIQMALGAARALEYLHEVCQPPIVHRNFKSANILLDDELVVRVSDCGLSPLISSGAVSQLSGQLLSAYGYGAPEFESGTYTYQSDVYSFGVVMLELLTGRKSYDRSRPRGEQHLARWAITQLHDIDALSRMVDPSLNGVYPAKSLSRFADIISLCIQPEPEFRPPMSEIVQNLLHMIQR 749    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3X979 ((protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform X1 {ECO:0000313|RefSeq:XP_016436490.1}))

HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 448/733 (61.12%), Postives = 549/733 (74.90%), Query Frame = 0
 
Query:   23 CQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAP-PIGSPPSEQVPRIRPNEPSNP--ETSSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEKPKHETSLLKTSHNENAQKDTEPKKEVAAAVPKR---NEASAVPRRNEVAGVS-KQNDVAEVARHRDEHEIDMPVSDEYILPPPPLPPLNN-PFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMV 747
            C+GFTDPRDV AIN+LY +LG P L GWV  G DPC + W GV CVN+N+TAI LN +NLGG L E +G FASIIQIDL NNHIGG IPSNLP T + LSLSGNQ TG+IP+T S+LGQL+D+SL+NNHL+GVIPD FQQL  LIN+DLSGN+L GQLPPS+GNL SLT LHLQ+NQL+G LDVLQDL L DL++ENNLFSGP+P KLL IP FRRAGNPFNTT++ SP  SP  AP  + SP  +  P +    PS    + S   K  N  +K + +I +AGL+ ++++ LG+CL MSR  K R  T+K  KRH    +  P   PKH+ S+ K  ++        P      A  +    N + AV  +   +  S   ND+        + E++  +SD  ILPPPP P L+    E++++ P +PP+ S + + + ++S   F+IASLQQYTNSFSQ+NL+GGG LGTVYR+E P  KLLAVKKLD A ++ Q+D +F+E VS +S L+H NIV+LVG+C EHGQRLLVYEYC NGT++EALH+DDEIH+ LSW+ RVR+ALQ+ARALEYLHEVC PPIVHQNF SANVLLDD  AVR+SDCGLAPL+SS+  TQ QG GYGAPELE+G+Y+CQSDVYSFGVVMLELLTGRK+YDRS PRGEQ LVRWA P+LHDID+LSRMVDPSL G+YPSKSLSR ADIISLC+Q EPEFRPPMSEIV++L HM+
Sbjct:   25 CKGFTDPRDVFAINSLYTSLGYPLLPGWVPYGLDPCGDKWHGVLCVNSNVTAIVLNDSNLGGELSEGIGSFASIIQIDLSNNHIGGSIPSNLPVTVKTLSLSGNQLTGSIPDTLSSLGQLSDLSLNNNHLSGVIPDAFQQLKTLINMDLSGNSLSGQLPPSMGNLSSLTTLHLQNNQLSGILDVLQDLALTDLNIENNLFSGPIPAKLLSIPTFRRAGNPFNTTIIPSPVISPSPAPFAVLSP--DVAPSLPSTVPSGQGLQHSGRQKSSNS-TKHVKFIAIAGLLTLVILGLGVCLLMSRYLKRRRQTQKEAKRHHAYAYSSPKGTPKHDQSVQKPYYDAEKDAGLRPGTGNGKAQGRNISLNTSEAVQHKGMKSTTSYTDNDL--------DSEMESTISD--ILPPPPPPFLSALSAERMVVNPILPPITSDRHAKKNVNSAEFFTIASLQQYTNSFSQDNLIGGGMLGTVYRAESPK-KLLAVKKLDTAVTRRQSDQEFVEMVSNISRLKHENIVKLVGYCSEHGQRLLVYEYCRNGTLHEALHLDDEIHRKLSWSTRVRIALQAARALEYLHEVCHPPIVHQNFKSANVLLDDELAVRMSDCGLAPLMSSDSTTQLQGCGYGAPELELGSYSCQSDVYSFGVVMLELLTGRKSYDRSRPRGEQLLVRWAIPRLHDIDSLSRMVDPSLNGSYPSKSLSRFADIISLCIQSEPEFRPPMSEIVQNLLHMI 743    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8AMS2 ((protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform X2 {ECO:0000313|RefSeq:XP_010268782.1}))

HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0
Identity = 463/773 (59.90%), Postives = 556/773 (71.93%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLVVC--QGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGSPPSEQVPRIRPNEPSNPETSSSSKGENFLS-KRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHE-MDVHDVPGEKPKHETSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQND------VAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNP---------FEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGS-----GYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGR 749
            M  F+WEI+ +V +GLM         G+TDPRDV AIN+LY ALG PPL GW+ +GGDPC E WQGVQCVN+NIT+I LNGANLGG LG++LG F S+I IDL NNHIGG IPSNLP T +   LS NQFTG+IP T S+L QLT MSL+NNHLTG IPD FQ LT L NLDL  NN+ GQLPPS+ +L SLT LHLQ+NQL+GTLDVLQDLPL DL++ENNLFSGP+P+KLL IPNF++ GNPFNTTV    P S P  P  G+P SE  P    N  ++P   +S+  +  L+ KRI+ I +AG++I I+  L + L  SRCCK R         HE M  +  P EK K   S+ +  +    Q+D  PK+   A V  ++E     RR       K N+      + EV + +++HEIDM   D  ++PPPP PP   P          EKVI+ P VPP     + +  L+SVR+F+IASLQQYTNSFSQEN LGGG LG+VYR+ELPDGKLLA+KKLD  ASKNQ D++FLE V  +S+L+H N+V+L G+C EHGQRLL+Y+YC NGT+++ALH DDE+++ LSWNAR+R+AL +ARALEYLHEVCQPP+VH+NF S NVLLDD  AV VSDCGLA LISS+ V+Q  G      GYGAPE E G YT QSDVYSFGVVMLELLTGRK+YDRS PRGEQ L RWA  QLHDIDALSRMVDPSL G YP+KSLSR ADIISLC+QPEPEFRPPMSEIV+DL HMV R
Sbjct:    1 MDHFSWEIYARVFLGLMVVFSASFSDGYTDPRDVFAINSLYTALGNPPLPGWIASGGDPCLEAWQGVQCVNSNITSIILNGANLGGELGDNLGSFFSLITIDLSNNHIGGSIPSNLPITMQNFFLSDNQFTGSIPSTLSSLSQLTAMSLNNNHLTGQIPDAFQGLTLLTNLDLFNNNMSGQLPPSMESLSSLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKLLNIPNFKKDGNPFNTTVAPLLPPSSPPPPFTGAPSSEVTPVNHTNGATSPGGLNSTGTKKTLTRKRIIGISIAGVLIFIIFLLVVALLASRCCKERQENDIFANSHEVMGTYKEPREKHKERHSVDQLDN----QRDKVPKE---AVVRPKDEHEIDARRVTAVPRMKDNNETDIKRMGEVPKKKEDHEIDMSGIDMILMPPPPPPPPPPPPPPPPPPPLIEKVIVNPIVPP-----RKLNPLTSVRSFTIASLQQYTNSFSQENFLGGGMLGSVYRAELPDGKLLAIKKLDNPASKNQKDEEFLELVLSISKLEHANVVKLEGYCAEHGQRLLIYDYCSNGTLHDALHSDDELNRKLSWNARIRIALGAARALEYLHEVCQPPVVHRNFKSGNVLLDDELAVHVSDCGLASLISSSAVSQLSGQLLSAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRKSYDRSWPRGEQHLARWAINQLHDIDALSRMVDPSLNGAYPAKSLSRFADIISLCIQPEPEFRPPMSEIVQDLLHMVQR 761    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8ALV2 ((protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform X1 {ECO:0000313|RefSeq:XP_010268781.1}))

HSP 1 Score: 868.611 bits (2243), Expect = 0.000e+0
Identity = 463/773 (59.90%), Postives = 556/773 (71.93%), Query Frame = 0
 
Query:    1 MGRFNWEIFGQVLVGLMSTLVVC--QGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTVLSSPPASPPSAPPIGSPPSEQVPRIRPNEPSNPETSSSSKGENFLS-KRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHE-MDVHDVPGEKPKHETSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQND------VAEVARHRDEHEIDMPVSDEYILPPPPLPPLNNP---------FEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGS-----GYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGR 749
            M  F+WEI+ +V +GLM         G+TDPRDV AIN+LY ALG PPL GW+ +GGDPC E WQGVQCVN+NIT+I LNGANLGG LG++LG F S+I IDL NNHIGG IPSNLP T +   LS NQFTG+IP T S+L QLT MSL+NNHLTG IPD FQ LT L NLDL  NN+ GQLPPS+ +L SLT LHLQ+NQL+GTLDVLQDLPL DL++ENNLFSGP+P+KLL IPNF++ GNPFNTTV    P S P  P  G+P SE  P    N  ++P   +S+  +  L+ KRI+ I +AG++I I+  L + L  SRCCK R         HE M  +  P EK K   S+ +  +    Q+D  PK+   A V  ++E     RR       K N+      + EV + +++HEIDM   D  ++PPPP PP   P          EKVI+ P VPP     + +  L+SVR+F+IASLQQYTNSFSQEN LGGG LG+VYR+ELPDGKLLA+KKLD  ASKNQ D++FLE V  +S+L+H N+V+L G+C EHGQRLL+Y+YC NGT+++ALH DDE+++ LSWNAR+R+AL +ARALEYLHEVCQPP+VH+NF S NVLLDD  AV VSDCGLA LISS+ V+Q  G      GYGAPE E G YT QSDVYSFGVVMLELLTGRK+YDRS PRGEQ L RWA  QLHDIDALSRMVDPSL G YP+KSLSR ADIISLC+QPEPEFRPPMSEIV+DL HMV R
Sbjct:   46 MDHFSWEIYARVFLGLMVVFSASFSDGYTDPRDVFAINSLYTALGNPPLPGWIASGGDPCLEAWQGVQCVNSNITSIILNGANLGGELGDNLGSFFSLITIDLSNNHIGGSIPSNLPITMQNFFLSDNQFTGSIPSTLSSLSQLTAMSLNNNHLTGQIPDAFQGLTLLTNLDLFNNNMSGQLPPSMESLSSLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKLLNIPNFKKDGNPFNTTVAPLLPPSSPPPPFTGAPSSEVTPVNHTNGATSPGGLNSTGTKKTLTRKRIIGISIAGVLIFIIFLLVVALLASRCCKERQENDIFANSHEVMGTYKEPREKHKERHSVDQLDN----QRDKVPKE---AVVRPKDEHEIDARRVTAVPRMKDNNETDIKRMGEVPKKKEDHEIDMSGIDMILMPPPPPPPPPPPPPPPPPPPLIEKVIVNPIVPP-----RKLNPLTSVRSFTIASLQQYTNSFSQENFLGGGMLGSVYRAELPDGKLLAIKKLDNPASKNQKDEEFLELVLSISKLEHANVVKLEGYCAEHGQRLLIYDYCSNGTLHDALHSDDELNRKLSWNARIRIALGAARALEYLHEVCQPPVVHRNFKSGNVLLDDELAVHVSDCGLASLISSSAVSQLSGQLLSAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRKSYDRSWPRGEQHLARWAINQLHDIDALSRMVDPSLNGAYPAKSLSRFADIISLCIQPEPEFRPPMSEIVQDLLHMVQR 806    
BLAST of XM_017375246.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0V0IUP6 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})

HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 452/746 (60.59%), Postives = 545/746 (73.06%), Query Frame = 0
 
Query:   23 CQGFTDPRDVAAINNLYGALGTPPLIGWVQAGGDPCTEGWQGVQCVNANITAIALNGANLGGVLGESLGVFASIIQIDLGNNHIGGIIPSNLPTTTRILSLSGNQFTGTIPETFSTLGQLTDMSLSNNHLTGVIPDTFQQLTGLINLDLSGNNLEGQLPPSLGNLLSLTKLHLQDNQLTGTLDVLQDLPLIDLDVENNLFSGPVPDKLLGIPNFRRAGNPFNTTV-------------LSSPPASPPSAPPIGSPPSEQVPRIRPNEPSNPETSSSSKGENFLSKRIVWIVVAGLVIVIVVALGLCLCMSRCCKGRPVTKKVPKRHEMDVHDVPGEK--PKHETSLLKTSHNENAQKDTEPKKEVAAAVPKRNEASAVPRRNEVAGVSKQNDVAEVARHRDEH---EIDMPVSDEYILPPPPLPPLNN-PFEKVIIRPNVPPVRSRKQSMEKLSSVRTFSIASLQQYTNSFSQENLLGGGKLGTVYRSELPDGKLLAVKKLDGAASKNQTDDDFLEFVSRVSELQHVNIVQLVGFCCEHGQRLLVYEYCGNGTVYEALHIDDEIHKNLSWNARVRLALQSARALEYLHEVCQPPIVHQNFTSANVLLDDGFAVRVSDCGLAPLISSNYVTQFQGSGYGAPELEMGNYTCQSDVYSFGVVMLELLTGRKAYDRSCPRGEQFLVRWAAPQLHDIDALSRMVDPSLKGTYPSKSLSRLADIISLCVQPEPEFRPPMSEIVEDLQHMVGR 749
            CQGFTDPRDV AIN+LY +LG P L GWV  G DPC + W GV CVN+N+T I LN +NLGG L E +G FASIIQIDL NNHIGG IPSNLP T + LSLSGNQ TG+IP+  S+LGQLTD+SL+NNHL GVIPD F QL  LIN+DLSGN+L GQLPPS+G L SLT LHLQ+NQL+G LDVLQDL L DL++ENNLFSGP+P KLL IP FRRAGNPFNTT+              +  P   PS P I  PP +++      +PS  + SS+S      +K +  I +AGLV ++++ LG+CL MSR CK R  T+K  KRHE   H +P  K  PKH+ SL K  ++   +    P       V    +A         +   +Q DV     + D+    E++  +SD  +LPPPP P L     E++++ P VP + S K +M+ ++S   F+IASLQQYTNSFSQ+NL+GGG LGTVYR+E P  KLLAVKKLD A +K Q+D +F+E VS +S+LQH NIV+LVG+C EHGQRLLVYEYC NGT++EALH+DD+IH+ LSW+ RVR+ALQ+ARALEYLHEVCQPPIVH NF S NVLLDD  AV +SDCGLAPL+SS+ + Q QGSGYGAPELE+GNYTCQSDVYSFGVVMLELLTGR++YDRS PRGEQ LVRWA P+LHDIDALSRMVDPSL G YPSKSLSR ADIISLC+QPEPEFRPPMSEIV++L  M+ R
Sbjct:   25 CQGFTDPRDVFAINSLYTSLGYPLLPGWVPYGLDPCVDLWHGVLCVNSNVTGIVLNDSNLGGELSEGIGSFASIIQIDLSNNHIGGSIPSNLPVTLKTLSLSGNQLTGSIPDNISSLGQLTDLSLNNNHLNGVIPDAFLQLKTLINMDLSGNSLSGQLPPSVGTLSSLTTLHLQNNQLSGILDVLQDLALTDLNIENNLFSGPIPPKLLSIPTFRRAGNPFNTTIIPSPPMISPSPAPFALSPDLAPSLPYI-VPPGQEL------QPSGRQKSSNS------TKHVKLIAIAGLVSLVILGLGVCLLMSRFCKRRRETQKETKRHETYDHSLPKAKGNPKHDQSLQKPYYDAEKEAGLRP-------VAGNGKAQGRNMSMNTSEAVQQKDVKSTISYTDDELGSEMEPMISD--VLPPPPPPFLQTLSAERMVVNPIVPSITSGKHAMKNVNSAEFFTIASLQQYTNSFSQDNLIGGGMLGTVYRAESPK-KLLAVKKLDTAMTKRQSDQEFVEMVSNISKLQHENIVKLVGYCSEHGQRLLVYEYCRNGTLHEALHLDDQIHRKLSWSTRVRIALQAARALEYLHEVCQPPIVHLNFKSTNVLLDDELAVHMSDCGLAPLMSSDSIRQLQGSGYGAPELELGNYTCQSDVYSFGVVMLELLTGRQSYDRSRPRGEQLLVRWAIPRLHDIDALSRMVDPSLNGCYPSKSLSRFADIISLCIQPEPEFRPPMSEIVQNLLQMIXR 747    
Match NameStatsDescription
A0A5B7BSE8E-Value: 0.000e+0, PID: 66.36Protein kinase domain-containing protein {ECO:0000... [more]
A0A7J7GSI3E-Value: 0.000e+0, PID: 60.23Protein kinase domain-containing protein {ECO:0000... [more]
A0A2R6RAT3E-Value: 0.000e+0, PID: 61.97(Protein STRUBBELIG-RECEPTOR FAMILY 3 like {ECO:00... [more]
A0A2R6QLK7E-Value: 0.000e+0, PID: 61.25(Protein STRUBBELIG-RECEPTOR FAMILY 3 like {ECO:00... [more]
A0A1U8BAQ5E-Value: 0.000e+0, PID: 59.24(protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 {... [more]
A0A1U8BED2E-Value: 0.000e+0, PID: 59.37(protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X2 {... [more]
A0A1S3X979E-Value: 0.000e+0, PID: 61.12(protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform... [more]
A0A1U8AMS2E-Value: 0.000e+0, PID: 59.90(protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform... [more]
A0A1U8ALV2E-Value: 0.000e+0, PID: 59.90(protein STRUBBELIG-RECEPTOR FAMILY 3-like isoform... [more]
A0A0V0IUP6E-Value: 0.000e+0, PID: 60.59Protein kinase domain-containing protein {ECO:0000... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content