Resource Type:
Polypeptide
Name:
XM_017381468.1
Identifier:
XM_017381468.1-protein
Sequence:
MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAI
LVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDE
ERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYP
PDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQ
ELYPSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGA
VHPALEQYNDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPI
SWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHH
SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQ
LHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLPVKQEK
PDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAI
GALLAEDVA
Sequence Length:
509
Sequence Checksum:
5fd1c4f1671cc0a522f4cfd15ded5711
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017381468.1, derives from mRNA, XM_017381468.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YVZ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA36062.1}))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 322/528 (60.98%), Postives = 387/528 (73.30%), Query Frame = 0
Match: A0A5B6YVZ8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA36062.1}))
HSP 1 Score: 598.201 bits (1541), Expect = 0.000e+0
Identity = 322/528 (60.98%), Postives = 387/528 (73.30%), Query Frame = 0
Query: 1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS-FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFG-----AVHPALEQYNDDF---QTASKSFRTSYDHDIS----SSSYLPSGSHALINGNSSSL-PISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHH-SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
MSN T+ESED+M + D DSPS EEA+S N+ GGG LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EER IIELHA+MGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGL IYPPDIC Q+ +EN S NMG F SG T +P+ L TNN EIP+VEFK L +NQ+LY S + P + L+ GL S NS ++S MHP KRLRESE LPG AV PA QY DD S F ++YDH+++ SSS + GSHA +NGNSSS PISWAMKLELPSLQYS +Q GSW +P SPLPS+ESVDTLIQ+P +E E + SP+N+GLLE++LYE+R LKN+K NSC QTP+ DSSS L + +W+ DP SPLGHS ASV+ E TP+SG+S DEPQ ++ +P VKQE +WV+ T + + N+ + ++RPDFLL SN+FG S + GK++ +L DAI ALL ED +
Sbjct: 1 MSNTTSESEDRMVSKDCADSPSVEEASSGENLVGGGPLKKGPWTSAEDAILVEYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGAFTPEEERCIIELHAQMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLSIYPPDICLQALNENQQSQNMGPFPSGNTRHPDLLSTNNFEIPAVEFKNLELNQQLYSSDLFDNPPSSLLAQGLGSSYGNSFMFSMMHPPKRLRESESLLPGVNDTICDAV-PAFSQYRDDCCDKVAQSYGFSSAYDHNLNVSQPSSSCVFPGSHAFLNGNSSSSEPISWAMKLELPSLQYSDTQAGSWGTPSSPLPSIESVDTLIQSPATEQTERDYCLSPRNSGLLEAVLYEARNLKNSKTNSCHQTPDASVMPVDVDSSSH-----NLCETEWEVSLDPISPLGHSAASVFSEYTPISGSSSDEPQSVEKIPGCKVKQEAVNWVT-TQYDGKEENANQMILTRPDFLLGSNFFGNSTERGKEHSMLSDAIEALLGEDFS 521
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BS28 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8544522.1}))
HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 320/530 (60.38%), Postives = 386/530 (72.83%), Query Frame = 0
Match: A0A5J5BS28 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8544522.1}))
HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 320/530 (60.38%), Postives = 386/530 (72.83%), Query Frame = 0
Query: 1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS-FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDD---FQTASKSFRTSYDHDI-----SSSSYLPSGSHALINGN-SSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHH-SPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTL---PVKQEKPDWVSMT-NGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
M+N T+ESED+M + D DSPS EE +GN+ GGG LKKGPWTSAEDAILVDYV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGL IYPPDIC Q+ +EN + NM F S +T +P+ LPTNN EIP+VEFK L +NQ+ Y S ++ PA + L+ GL S SN+ ++S MHP KRLRESE LPG AV PA QY DD S F + YD+++ SSS LP GSHA +NGN SSS ISWAMKLELPSLQYS +Q GSW +P SPLPS+ESVDTLI++P +E E + SP+N+GLL+++LYE+R LKN+KNNSCG + + P G D SS L +A W+ DP SPLGHS ASV+ E TP+SG+S DEPQ ++++ VKQE DWV+ +GNE + N + +RPDFLL SN+F S + GK++ +L DAI ALL ED +
Sbjct: 1 MNNMTSESEDRMVSKDCADSPSVEE-VGDGNLAGGGPLKKGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGAFTPEEERHIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLSIYPPDICLQALNENQQTRNMDLFPSADTHHPDLLPTNNFEIPAVEFKNLELNQQFYSSALLDNPASSLLTQGLGCSYSNNFMFSTMHPPKRLRESESLLPGVNDTLCNAV-PAFGQYQDDGCEKVAQSIGFSSVYDYNLNVSQPSSSCVLP-GSHAFLNGNSSSSESISWAMKLELPSLQYSDTQAGSWGTPSSPLPSIESVDTLIRSPATEQIERDYCLSPRNSGLLDAVLYEARTLKNSKNNSCGTSDASVMPG-GVDGSSH-----NLWEAKWEVSHDPISPLGHSAASVFSEYTPISGSSSDEPQSVESMQGCKVKQEAFDWVTARYDGNEDNAN--QMISTRPDFLLGSNFFCNSTERGKEHSMLTDAIEALLGEDFS 519
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TSY0 ((transcription factor GAMYB-like {ECO:0000313|RefSeq:XP_027081255.1}))
HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 299/516 (57.95%), Postives = 365/516 (70.74%), Query Frame = 0
Match: A0A6P6TSY0 ((transcription factor GAMYB-like {ECO:0000313|RefSeq:XP_027081255.1}))
HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 299/516 (57.95%), Postives = 365/516 (70.74%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS---------FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDDFQTASKSF--RTSYDHDI-----SSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWV-SMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYF 494
T+ESED+M + SPS EE + GN G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDIC Q+ E+ S N+ FSS ET +P+ LP N+ EIP+VEFK L +N +LYPS ++IPA + L+ GL S IL S +HP KRLR+SE PG GA + +ND +SF ++YD ++ S+S LP GSHAL+NGN SS SWAMKLELPSLQ +Q+GSW SP SPLPSLESVDTLIQ+PP+EH +SG SP+N+GLL+++LYES++LKN K++SC Q ++ + A G + L D LH+A+W++ GDP SP GHS ASV E TP+S +S+DE Q ++ P VKQE + V + GN+ NS ++ SRPDFLL SN FG +YGK+
Sbjct: 4 TSESEDRMVPKGAIGSPSIEETSGGGNFGVNGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDICLQALSESKQSENLSSFSSVETQHPDLLPINSFEIPAVEFKNLELNHQLYPSPLLDVPGRGLLDIPASSLLAQGLHSSYGGKILLSAVHPTKRLRQSESLFPGLATSFTGAFTNCSKYHNDGSAQNLQSFGITSAYDQNLTSDNQSTSCVLP-GSHALLNGNPSSSEPSWAMKLELPSLQ---TQIGSWGSPSSPLPSLESVDTLIQSPPTEHTQSGSLSPRNSGLLDAVLYESQSLKNFKSSSC-QHMSSVSMAQGEVMDNSLQD---LHEAEWEAYGDPISPRGHSAASVLSEYTPISRSSMDELQSLENTPGGKVKQEAEEMVPTQFCGNDDAFNSNNMIFSRPDFLLASNCFGPKGEYGKEQL 511
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UQ74 ((Uncharacterized protein {ECO:0000313|EMBL:CDP09733.1}))
HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 298/516 (57.75%), Postives = 365/516 (70.74%), Query Frame = 0
Match: A0A068UQ74 ((Uncharacterized protein {ECO:0000313|EMBL:CDP09733.1}))
HSP 1 Score: 543.117 bits (1398), Expect = 0.000e+0
Identity = 298/516 (57.75%), Postives = 365/516 (70.74%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYPS---------FVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF-----GAVHPALEQYNDDFQTASKSF--RTSYDHDI-----SSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWV-SMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYF 494
T+ESED+M + SPS EE + GN G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+FTP+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDIC Q+ E+ S N+ FSS ET +P+ LP N+ EIP+VEFK L +N +LYPS ++IPA + L+ GL S L S +HP KRLR+SE PG GA + +ND + +SF ++YD ++ S+S LP GSHAL+NGN SS SWAMKLELPSLQ +Q+GSW SP SPLPSLESVDTLIQ+PP+EH +SG SP+N+GLL+++LYES++LKN K++SC Q ++ + A G + L D LH+A+W++ GDP SP GHS ASV E TP+S +S+DE Q ++ P VKQE + V + GN+ NS ++ SRPDFLL SN FG +YGK+
Sbjct: 4 TSESEDRMVPKGAIGSPSIEETSGGGNFGVNGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDICLQALSESKQSENLSSFSSVETQHPDLLPINSFEIPAVEFKNLELNHQLYPSPLLDVPGRGLLDIPASSLLAQGLHSSYGGKTLLSAVHPTKRLRQSESLFPGLATSFTGAFTNCSKYHNDGSAQSLQSFGITSAYDQNLTSDNHSTSCVLP-GSHALLNGNPSSSEPSWAMKLELPSLQ---TQIGSWGSPSSPLPSLESVDTLIQSPPTEHTQSGSLSPRNSGLLDAVLYESQSLKNFKSSSC-QHMSSVSMAQGEVMDNSLQD---LHEAEWEAYGDPISPRGHSAASVLSEYTPISRSSMDELQSLENTPGGKVKQEAEEMVPTQFCGNDDAFNSNNMIFSRPDFLLASNCFGPKGEYGKEQL 511
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M096 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9462071.1}) (Fragment))
HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 310/549 (56.47%), Postives = 377/549 (68.67%), Query Frame = 0
Match: A0A6A4M096 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9462071.1}) (Fragment))
HSP 1 Score: 537.724 bits (1384), Expect = 0.000e+0
Identity = 310/549 (56.47%), Postives = 377/549 (68.67%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAE------------------------LPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF--GAV--HPALEQYNDD-FQTASKSFRTS--YDHD-----ISSSSYLPSGSHALINGNSS-SLPISWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANG-ADSSSQ-LHD-ASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
T+ES+D+ + D +DSP EEA+S GN+ GG LKKGPWTS EDAIL+DYV KHGEGNWNAVQK+SGL RCGKSCRLRWANHLRPDL+KGSFTPDEER IIELHAKMGNKWARMAAE LPGRTDNEIKN+WNTRIKR QRAGLPIYPPDIC Q+ +N + G +GE +P+ LPT++ +IP+VEFK L NQ+LY P ++IP + + GL S SNS+++S +HPAKRLR+SE LPG G + PA +QY DD + +SF S YD D +SSSS P GSHAL+NGNSS S P+SWAMK ELPSLQYS +Q+GS +PSPLPSLES DTLIQ+P +E +S S +N+GLLE++LYES LK+ KN C Q N A DSSSQ LH+ S++H DP SPLGHS ASV+ ECTP+ G S DEP LP VKQE DW ++ ++ + NS + SRPDFLLDS+WFG S + G+++ +L DAIGALL ED +
Sbjct: 2 TSESKDRTVSKDCIDSPYAEEASSGGNLGGGSPLKKGPWTSTEDAILIDYVHKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPDLRKGSFTPDEERHIIELHAKMGNKWARMAAERGNVMFMSNNAALMIGEEIFPSLMLPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDIC-QALHDNQHCQHTGSLPTGEAQHPDLLPTDSFDIPAVEFKNLEFNQQLYSPILLDIPPSSLPAQGLGSSHSNSLMFSMLHPAKRLRQSECLLPGVNSGTIDGFPAFDQYEDDGCEKIGQSFTFSAMYDRDRKASRMSSSSRNP-GSHALLNGNSSTSEPMSWAMKSELPSLQYSDTQVGSGVTPSPLPSLESDDTLIQSPSTEQTQSDSLSRRNSGLLEAVLYESETLKSAKNGCCHQNSNVSVVAGDLVDSSSQSLHERKSKIH------TNDPISPLGHSGASVFSECTPIGGYSFDEPYSAYILPGCKVKQEAVDWGTVKCFDKEE-NSNEMLFSRPDFLLDSSWFGHSTERGREHSVLTDAIGALLGEDFS 541
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G082 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120306.1}))
HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 308/549 (56.10%), Postives = 377/549 (68.67%), Query Frame = 0
Match: A0A834G082 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7120306.1}))
HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 308/549 (56.10%), Postives = 377/549 (68.67%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAE------------------------LPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPG--FGAV--HPALEQYNDD-FQTASKSFRTS--YDHD-----ISSSSYLPSGSHALINGNSS-SLPISWAMKLELPSLQYSHSQMGSWASPSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANG-ADSSSQ-LHDA-SQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSN-WFGLSADYGKDYFILRDAIGALLAEDV 508
T+ES+D+ + D +DSP EEA+S GN+ GG LKKGPWTS ED+IL+DYV KHGEGNWNAVQK+SGL RCGKSCRLRWANHLRPDL+KGSFTPDEER IIELHAKMGNKWARMAAE LPGRTDNEIKN+WNTRIKR QRAGLPIYPPDIC Q+ +N + G +GE +P+ LPT++ +IP+VEFK L NQ+LY P ++IP + + GL S SNS+++S +HPAKRLR+SE LPG G + PA +QY DD + +SF S YD D +SSSS P GSHAL+NGNSS S P+SWAMK ELPSLQYS +Q+GS +PSPLPSLES DTLIQ+P +E +S S +N+GLLE++LYES LK+ KN C Q N A+ DSSSQ LH+ S++H DP SPLGHS ASV+ ECTP+ G S DEP LP VKQE DW ++ ++ + N+ + SRPDFLLDS+ WFG S + G+++ +L DAIGALL ED
Sbjct: 2 TSESKDRTVSKDCIDSPYAEEASSGGNLGGGSPLKKGPWTSTEDSILIDYVHKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPDLRKGSFTPDEERHIIELHAKMGNKWARMAAERGNVMFMSNNAALMIGEEIFPSLMLPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDIC-QALHDNQHCQHTGSLPTGEAQHPDLLPTDSFDIPAVEFKNLEFNQQLYSPILLDIPPSSLPAQGLGSSHSNSLMFSMLHPAKRLRQSECLLPGGNSGTIDGFPAFDQYEDDGCEKIGQSFTFSAMYDRDRKASQLSSSSRNP-GSHALLNGNSSTSEPMSWAMKSELPSLQYSDTQVGSGVTPSPLPSLESDDTLIQSPSTEQTQSDSLSRRNSGLLEAVLYESETLKSAKNGCCHQNSNVSVVASDLVDSSSQSLHETKSKIH------TNDPISPLGHSGASVFSECTPIGGYSFDEPHSAYILPGCKVKQEAVDWGTVKCFDKEE-NANEMLFSRPDFLLDSSCWFGHSTERGREHSVLTDAIGALLGEDF 541
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4ENA7 ((Uncharacterized protein {ECO:0000313|EMBL:THG18161.1}))
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 302/523 (57.74%), Postives = 366/523 (69.98%), Query Frame = 0
Match: A0A4S4ENA7 ((Uncharacterized protein {ECO:0000313|EMBL:THG18161.1}))
HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 302/523 (57.74%), Postives = 366/523 (69.98%), Query Frame = 0
Query: 1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY-PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRL---RESELSLPGFGA----VHPALEQYNDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGN-SSSLPISWAMKLELPSLQYSHSQMGSWAS---PSPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGA-DSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP---VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAED 507
+SN T++SEDKM + D MDSPS EEA+S G + GGGLLKKGPWTSAEDAILVDYV +HGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDL+KG+FTPDEE+ IIELHAKMGNKWARMAAE+PGRTDNEIKN+WNTRIKRR RAGLPIYPPDI SQ+ EN NMG F ET +P+ L TN+ EIP VEFK L ++Q+LY P+ +IPA L+ GL S S+S+++S +HP KR RESE +P + A +QY DD SSS LP GSHAL+NGN SSS P+ WAM ELPSLQYS +Q+GSW + SPLPSL+SV TLIQ+P +E A+S S +N+GLLE++LYES LK++KN+ C T N A A DS SQ L + W+ DP SPLGHST+SV+ ECTP+SG+S DEP ++ P KQE DWV+ T + + N+ + RPDFLL SNWFG S + G+++ +L D G LL ED
Sbjct: 73 ISNMTSDSEDKM-SEDCMDSPSVEEASSIGKLGGGGLLKKGPWTSAEDAILVDYVNRHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLRKGAFTPDEEKTIIELHAKMGNKWARMAAEMPGRTDNEIKNYWNTRIKRRHRAGLPIYPPDI-SQALHENQQCQNMGTFPMVETHHPDLLSTNSFEIPLVEFKNLELDQQLYSPALPDIPASGLLAQGLGSSHSDSLMFSMLHPPKRFRESRESECLIPCVNSSTADYFRAFDQYPDDGCEKITQL---------SSSILP-GSHALLNGNFSSSEPMPWAMNPELPSLQYSDAQVGSWETGTPSSPLPSLDSVSTLIQSPSTEQAQSDSLSRRNSGLLEAVLYESHTLKSSKNSFCDLTSNVSVVAGDAMDSLSQ-----NLRETQWEIHSDPISPLGHSTSSVFSECTPISGSSFDEPHSVEIFPECLAKQEAVDWVT-TKCDVNEENANQMMFLRPDFLLASNWFGHSTERGREHSVLNDTRGTLLGED 577
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A291EX61 ((Transcription factor GAMYB {ECO:0000313|EMBL:ATG24457.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 2.045e-174
Identity = 284/526 (53.99%), Postives = 355/526 (67.49%), Query Frame = 0
Match: A0A291EX61 ((Transcription factor GAMYB {ECO:0000313|EMBL:ATG24457.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 2.045e-174
Identity = 284/526 (53.99%), Postives = 355/526 (67.49%), Query Frame = 0
Query: 1 MSNRTNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELY---PSFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGF----GAVHPALEQYND-DFQTASKSFRT-SYDHDISSSSYLP----SGSHALINGNSSSL-PISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLPVKQEKPDWVSMTNGNETDGNS--RHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
MS+ TNESED M + + DSPSTEE TS GNM GG LKKGPWTSAEDAILVDYV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG F+P+EERRIIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKR QRAGLPIYPP++ Q+ + + S +G +G+T +P+ L T+N EIP V FK L + + P+ +++PA + + G+ S S + ++ +H KRLRESE PG + P QY D + S F + YD DI++ LP SGSHAL+NGNSSS PI+ A+KLELPSLQYS ++ SW +P SPLPSLESVDTLIQ+PP+E +S SP++NGLLE++LYES LK++K C +T +T S L+ +W++ GDPNSPL S +SV+ E TP+S +S DEP L++T+ + KPD V+ + + + SRPD LLD +WFG D I DAI ALL ED++
Sbjct: 1 MSSMTNESEDNM-SKGHQDSPSTEE-TSGGNMGGGAHLKKGPWTSAEDAILVDYVNKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPDLKKGPFSPEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRLQRAGLPIYPPEVRMQAQNVSQESQIIGTLPTGDTSSPDILKTDNFEIPDVGFKNLELTRGFLSYSPTLLDMPASSMVKQGVHSSYSYNFMFPTIHSPKRLRESETLFPGLDDSVSSGLPVFHQYVDYACENMSDPFLSFPYDSDINAYDQLPLDVISGSHALLNGNSSSSEPIAGALKLELPSLQYSETRQDSWGTPASPLPSLESVDTLIQSPPTEQTQSECLSPRSNGLLEAVLYESETLKSSKKYLCPKTWDTSVMPGDVVDSPPLNPCK----TEWEAKGDPNSPLARSASSVFSERTPISASSSDEPHLVETMLGCEVKPDMVNRVSTQDVQKKKIRYQMEFSRPDALLDLSWFGHGNGCVNDQSIPTDAIAALLGEDIS 520
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TCX0 ((transcription factor GAMYB-like isoform X2 {ECO:0000313|RefSeq:XP_011080498.1, ECO:0000313|RefSeq:XP_011080499.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 2.668e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0
Match: A0A6I9TCX0 ((transcription factor GAMYB-like isoform X2 {ECO:0000313|RefSeq:XP_011080498.1, ECO:0000313|RefSeq:XP_011080499.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 2.668e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYP---------SFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGAVH----PALEQY-NDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP-VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
T+ES ++ + +DSP+ ++A S G + G G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+F+P+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDI + EN S ++ FSSG++ P+F+P NN EIP+VEFK L +NQ+LYP +++PA + L+ GL PS N L S +HP+KRLR SE PG A P QY ND ++SF S +D +S S + SGSHA++NGN SS WAMKLELPSLQ +Q+G W SP SPLP+LESVDTLIQTPP+EH S H P+N+GLL+++LYES+ +K K +S D + D+SSQ H+ DW++ G+ +PLGHS++S++ E TP +GNS DEPQ ++T+P K E+ +M + N+ + + ++ SRPD L S+ + LS D+ +L+DAIG LL +D++
Sbjct: 4 TSESNERSMPKNGVDSPAADDANSGGYVGGHGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFSPEEERLIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDISLRPSKENQQSDDISSFSSGDSHYPDFMPVNNFEIPAVEFKNLELNQQLYPPALLDIPATGLLDVPASSLLAQGLPPSYPNKSLLSTIHPSKRLRGSEPLFPGLCATMGNSIPGRSQYQNDGPMQIAQSFINSSAYDHTSFSSVLSGSHAILNGNPSSSEPDWAMKLELPSLQ---TQVGGWGSPSSPLPNLESVDTLIQTPPTEHTLSYDHPPRNSGLLDAVLYESQTMKQPKYSSH----LADMLVDIMDTSSQY-----FHETDWEAYGESTTPLGHSSSSIFSESTPTNGNSFDEPQSVETIPGCKLEE----TMQSDNKAE-TTNNMIFSRPDLLPASDCYSLSEGPTMDHSLLKDAIGTLLVDDLS 507
BLAST of XM_017381468.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T8E7 ((transcription factor GAMYB-like isoform X1 {ECO:0000313|RefSeq:XP_011080497.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 3.615e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0
Match: A0A6I9T8E7 ((transcription factor GAMYB-like isoform X1 {ECO:0000313|RefSeq:XP_011080497.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 3.615e-174
Identity = 282/521 (54.13%), Postives = 363/521 (69.67%), Query Frame = 0
Query: 5 TNESEDKMEANDYMDSPSTEEATSEGNMTGGGLLKKGPWTSAEDAILVDYVEKHGEGNWNAVQKHSGLFRCGKSCRLRWANHLRPDLKKGSFTPDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNFWNTRIKRRQRAGLPIYPPDICSQSFDENSPSLNMGRFSSGETPNPEFLPTNNLEIPSVEFKGLGVNQELYP---------SFVNIPAGNFLSAGLSPSCSNSILYSKMHPAKRLRESELSLPGFGAVH----PALEQY-NDDFQTASKSFRTSYDHDISSSSYLPSGSHALINGNSSSLPISWAMKLELPSLQYSHSQMGSWASP-SPLPSLESVDTLIQTPPSEHAESGHHSPQNNGLLESILYESRALKNTKNNSCGQTPNTDAPANGADSSSQLHDASQLHDADWDSCGDPNSPLGHSTASVYRECTPVSGNSLDEPQLMKTLP-VKQEKPDWVSMTNGNETDGNSRHLNISRPDFLLDSNWFGLSADYGKDYFILRDAIGALLAEDVA 509
T+ES ++ + +DSP+ ++A S G + G G LKKGPWTSAEDAILV+YV KHGEGNWNAVQKHSGL RCGKSCRLRWANHLRPDLKKG+F+P+EER IIELHAKMGNKWARMAAELPGRTDNEIKN+WNTRIKRRQRAGLPIYPPDI + EN S ++ FSSG++ P+F+P NN EIP+VEFK L +NQ+LYP +++PA + L+ GL PS N L S +HP+KRLR SE PG A P QY ND ++SF S +D +S S + SGSHA++NGN SS WAMKLELPSLQ +Q+G W SP SPLP+LESVDTLIQTPP+EH S H P+N+GLL+++LYES+ +K K +S D + D+SSQ H+ DW++ G+ +PLGHS++S++ E TP +GNS DEPQ ++T+P K E+ +M + N+ + + ++ SRPD L S+ + LS D+ +L+DAIG LL +D++
Sbjct: 14 TSESNERSMPKNGVDSPAADDANSGGYVGGHGPLKKGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFSPEEERLIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRRQRAGLPIYPPDISLRPSKENQQSDDISSFSSGDSHYPDFMPVNNFEIPAVEFKNLELNQQLYPPALLDIPATGLLDVPASSLLAQGLPPSYPNKSLLSTIHPSKRLRGSEPLFPGLCATMGNSIPGRSQYQNDGPMQIAQSFINSSAYDHTSFSSVLSGSHAILNGNPSSSEPDWAMKLELPSLQ---TQVGGWGSPSSPLPNLESVDTLIQTPPTEHTLSYDHPPRNSGLLDAVLYESQTMKQPKYSSH----LADMLVDIMDTSSQY-----FHETDWEAYGESTTPLGHSSSSIFSESTPTNGNSFDEPQSVETIPGCKLEE----TMQSDNKAE-TTNNMIFSRPDLLPASDCYSLSEGPTMDHSLLKDAIGTLLVDDLS 517
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YVZ8 | E-Value: 0.000e+0, PID: 60.98 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3606... [more] |
| A0A5J5BS28 | E-Value: 0.000e+0, PID: 60.38 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8544... [more] |
| A0A6P6TSY0 | E-Value: 0.000e+0, PID: 57.95 | (transcription factor GAMYB-like {ECO:0000313|RefS... [more] |
| A0A068UQ74 | E-Value: 0.000e+0, PID: 57.75 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0973... [more] |
| A0A6A4M096 | E-Value: 0.000e+0, PID: 56.47 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9462... [more] |
| A0A834G082 | E-Value: 0.000e+0, PID: 56.10 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7120... [more] |
| A0A4S4ENA7 | E-Value: 0.000e+0, PID: 57.74 | (Uncharacterized protein {ECO:0000313|EMBL:THG1816... [more] |
| A0A291EX61 | E-Value: 2.045e-174, PID: 53.99 | (Transcription factor GAMYB {ECO:0000313|EMBL:ATG2... [more] |
| A0A6I9TCX0 | E-Value: 2.668e-174, PID: 54.13 | (transcription factor GAMYB-like isoform X2 {ECO:0... [more] |
| A0A6I9T8E7 | E-Value: 3.615e-174, PID: 54.13 | (transcription factor GAMYB-like isoform X1 {ECO:0... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |