Resource Type:
Polypeptide
Name:
XM_017381923.1
Identifier:
XM_017381923.1-protein
Sequence:
MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKT
ECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRD
EWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDS
RCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGP
LRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWD
ALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKP
SPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESA
NLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWD
GPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE
Sequence Length:
431
Sequence Checksum:
2761f4087c6ce004ca65bfc41d57f944
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017381923.1, derives from mRNA, XM_017381923.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TZI5 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 354/425 (83.29%), Postives = 395/425 (92.94%), Query Frame = 0
Match: A0A068TZI5 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 354/425 (83.29%), Postives = 395/425 (92.94%), Query Frame = 0
Query: 7 HHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE 431
HQTVPLSVLLKRELA+EKVE+PE+SHGQA+QSKKGEDFTL+KTECQRVLGD +TTY VFGLFDGHNGSAAAIYSKENLL NVLGAIP DLNRDEW++ALPRALVAGFVKTDKD QERA+TSGTTVTFV+IEG VTVASVGDSRC+LES+EG+IYYLSADHRLE NEEER+RI +SGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGDMDVGE+IVPVP+VKQVKLSS+GGRL+ISSDGVWDALSAE AF+CCR MP DAAASQIVKEAV KGLRDDTTCIV+D+QPPEKP+PPL APP+KQG VFKSMF+KK SE SS + KE+SEPD VEEL EE SA+LSERLDTKYP+CNMFKLF+CA+CQVE+KPGEG+SIH G++N++K+RPWDGPFLCSSCQEKKEAMEG+R GD YSSGS+
Sbjct: 6 EHQTVPLSVLLKRELANEKVERPELSHGQASQSKKGEDFTLLKTECQRVLGDGITTYSVFGLFDGHNGSAAAIYSKENLLNNVLGAIPADLNRDEWVSALPRALVAGFVKTDKDFQERAQTSGTTVTFVIIEGWVVTVASVGDSRCVLESAEGDIYYLSADHRLECNEEERERITSSGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSAGGRLIISSDGVWDALSAEVAFDCCRVMPADAAASQIVKEAVQVKGLRDDTTCIVVDIQPPEKPNPPL-APPKKQGKGVFKSMFRKKPSESSSHTGKEFSEPDVVEELFEEGSASLSERLDTKYPVCNMFKLFVCAVCQVEIKPGEGISIHVGSKNSRKLRPWDGPFLCSSCQEKKEAMEGKRPSGDGRYSSGSD 429
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6UNP0 ((probable protein phosphatase 2C 12 {ECO:0000313|RefSeq:XP_027092098.1, ECO:0000313|RefSeq:XP_027092099.1}))
HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 353/425 (83.06%), Postives = 394/425 (92.71%), Query Frame = 0
Match: A0A6P6UNP0 ((probable protein phosphatase 2C 12 {ECO:0000313|RefSeq:XP_027092098.1, ECO:0000313|RefSeq:XP_027092099.1}))
HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 353/425 (83.06%), Postives = 394/425 (92.71%), Query Frame = 0
Query: 7 HHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE 431
HQTVPLSVLLKRELA+EKVE+PE+SHGQA+QSKKGEDFTL+KTECQRVLGD +TTY VFGLFDGHNGSAAAIYSKENLL NVLGAIP DLNRDEW++ALPRALVAGFVKTDKD QERA+TSGTTVTFV+IEG VTVASVGDSRC+LES+EG+IYYLSADHRLE NEEER+RI +SGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGDMDVGE+IVPVP+VKQVKLSS+GGRL+ISSDGVWDALSAE AF+CCR MP DAAASQIVKEAV KGLRDDTTCIV+D+QPPEKP+PPL AP +KQG VFKSMF+KK SE SS + KE+SEPD VEEL EE SA+LSERLDTKYP+CNMFKLF+CA+CQVE+KPGEG+SIH G++N++K+RPWDGPFLCSSCQEKKEAMEG+R GD YSSGS+
Sbjct: 6 EHQTVPLSVLLKRELANEKVERPELSHGQASQSKKGEDFTLLKTECQRVLGDGITTYSVFGLFDGHNGSAAAIYSKENLLNNVLGAIPADLNRDEWVSALPRALVAGFVKTDKDFQERAQTSGTTVTFVIIEGWVVTVASVGDSRCVLESAEGDIYYLSADHRLECNEEERERITSSGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSAGGRLIISSDGVWDALSAEVAFDCCRVMPADAAASQIVKEAVQVKGLRDDTTCIVVDIQPPEKPNPPL-APLKKQGKGVFKSMFRKKPSESSSHTGKEFSEPDVVEELFEEGSASLSERLDTKYPVCNMFKLFVCAVCQVEIKPGEGISIHVGSKNSRKLRPWDGPFLCSSCQEKKEAMEGKRPSGDGRYSSGSD 429
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGF6 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 726.857 bits (1875), Expect = 0.000e+0
Identity = 344/425 (80.94%), Postives = 384/425 (90.35%), Query Frame = 0
Match: A0A5J5AGF6 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 726.857 bits (1875), Expect = 0.000e+0
Identity = 344/425 (80.94%), Postives = 384/425 (90.35%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDST 425
M ++S+HH TVPLSVLL+RELA+EK+E PE+S+GQANQSKKGEDFTL+K+ECQRV GD VTTY VFGLFDGHNGSAAAIYSKENLL N+L AIP DLNRDEW+AALPRALV+GFVKTDKD QE+A+TSGTTVTFV+IEG VTVASVGDSRCI ES+EGEIYYLSADHRLE NEEER+RI ASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGD+DVGEYIVPVP+VKQVK+SS GGRL+ISSDGVWDALSAETA ECCRGMP DAAASQIVKEAV KGLRDDTTCIV+D+ PPEK +PPLP PP+KQ VFKSMF+K+SSE SS +KEY EPD VEEL EE SANLSERLD KYP+CNMFKLF+CA+CQ+EMKPG+G+SIH G+ N++K+RPWDGPFLC SCQEKKEAMEG+R G T
Sbjct: 1 MCSKSEHHTTVPLSVLLRRELANEKIESPELSYGQANQSKKGEDFTLLKSECQRVAGDGVTTYSVFGLFDGHNGSAAAIYSKENLLNNILAAIPSDLNRDEWVAALPRALVSGFVKTDKDFQEKAKTSGTTVTFVIIEGWVVTVASVGDSRCIFESTEGEIYYLSADHRLECNEEERERITASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDLDVGEYIVPVPYVKQVKMSSGGGRLIISSDGVWDALSAETALECCRGMPADAAASQIVKEAVQAKGLRDDTTCIVVDIYPPEKTNPPLP-PPKKQVKGVFKSMFRKRSSESSSNFDKEYCEPDVVEELFEEGSANLSERLDAKYPVCNMFKLFMCAVCQLEMKPGDGISIHEGSSNSRKLRPWDGPFLCLSCQEKKEAMEGKRPSGGMT 424
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RN50 ((Protein like {ECO:0000313|EMBL:PSS31415.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 348/431 (80.74%), Postives = 385/431 (89.33%), Query Frame = 0
Match: A0A2R6RN50 ((Protein like {ECO:0000313|EMBL:PSS31415.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 348/431 (80.74%), Postives = 385/431 (89.33%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE 431
MS++ +H QTVPLSVLLKRELASEKVE PEISHGQA+QSKKGEDF +KTECQRV GD V+TY VF LFDGHNGSAAAIYSKENLL NVL A+P DLNRDEW+AALPRALVAGFVKTDKDLQERA+TSGTTVTF++IE +TVASVGDSRCILES+EGEIYYLSADHRLE N EER+RI ASGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGDMDVGE+IVPVP+VKQVKLS++GGRL+ISSDGVWDALSAE AF+CCRGMP DAAASQIVKEAV KGLRDDTTCIVID+Q PEKP+P LP PP+K G VF SMF KK SE SS +EKEY EPD VEEL EE SA LSERLD+KYP+CN+FKLF+CA+CQVE+KPGEGVSIH+ N+ K+RPWDGPFLCS+CQEKKEAMEG+R GD YSSGS+
Sbjct: 1 MSSKGEH-QTVPLSVLLKRELASEKVESPEISHGQASQSKKGEDFIFIKTECQRVAGDGVSTYSVFALFDGHNGSAAAIYSKENLLNNVLAAVPSDLNRDEWVAALPRALVAGFVKTDKDLQERAQTSGTTVTFMIIERWVITVASVGDSRCILESAEGEIYYLSADHRLECNVEERERITASGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRLIISSDGVWDALSAEAAFDCCRGMPADAAASQIVKEAVQAKGLRDDTTCIVIDMQLPEKPTPSLP-PPKKPGKGVFMSMFWKKPSESSSQTEKEYCEPDMVEELFEEGSAMLSERLDSKYPLCNVFKLFMCAVCQVELKPGEGVSIHADISNSGKLRPWDGPFLCSTCQEKKEAMEGKRPSGDGRYSSGSD 429
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APC4 ((Putative Phosphatase 2C family protein isoform 1 {ECO:0000313|EMBL:MPA58204.1}) (3.1.3.16 {ECO:0000313|EMBL:MPA58204.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 349/432 (80.79%), Postives = 386/432 (89.35%), Query Frame = 0
Match: A0A5B7APC4 ((Putative Phosphatase 2C family protein isoform 1 {ECO:0000313|EMBL:MPA58204.1}) (3.1.3.16 {ECO:0000313|EMBL:MPA58204.1}))
HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 349/432 (80.79%), Postives = 386/432 (89.35%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGD-STYSSGSE 431
MS+R +H QTVPLSVLLKRELA+EK+EKPEISHGQA+QSKKGED TL+K++CQRV GD VTTY VF LFDGHNGSAAAIYSKENLL NVL AIP DLN DEW+AALPRALVAGFVKTDKD QE+ARTSGTTVTFV+IEG VTVASVGDSRCILES+EG IYYLSADHRLE +EEER+RI ASGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGDMDVGE+IVPVP+VKQVKLSS GGRL+ISSDGVWDALSAE A +CCRGMP DAAASQ+VKEAV KGLRDDTTCIVID+QPPEK SPPLP P+KQ VF+SMF+K++SE SS +KEY EPD VEEL EE SA LSERLDTKYP+CNMFKLF+CA+CQ+EMKPGEG+SIH + N+ K+RPWDGPFLC SCQEKKEAMEG+R GD S YSSGS+
Sbjct: 1 MSSRGEH-QTVPLSVLLKRELANEKIEKPEISHGQASQSKKGEDLTLLKSDCQRVAGDGVTTYSVFALFDGHNGSAAAIYSKENLLNNVLAAIPSDLNIDEWVAALPRALVAGFVKTDKDFQEKARTSGTTVTFVMIEGWVVTVASVGDSRCILESAEGGIYYLSADHRLECSEEERERITASGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSSGGGRLIISSDGVWDALSAEMALDCCRGMPADAAASQVVKEAVQVKGLRDDTTCIVIDIQPPEKTSPPLPL-PKKQVKGVFRSMFRKRTSESSSNIDKEYCEPDVVEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQLEMKPGEGISIHKASSNSGKLRPWDGPFLCLSCQEKKEAMEGKRPSGDGSRYSSGSD 430
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HS01 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 346/432 (80.09%), Postives = 390/432 (90.28%), Query Frame = 0
Match: A0A7J7HS01 (PPM-type phosphatase domain-containing protein {ECO:0000259|PROSITE:PS51746})
HSP 1 Score: 717.613 bits (1851), Expect = 0.000e+0
Identity = 346/432 (80.09%), Postives = 390/432 (90.28%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMK-VFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE 431
MS++ +H QTVPLSVLLKRELA+EK+E PEI HGQA+QSKKGEDFT VKTECQRV+GD+V TY VF LFDGHNG AAAIYSKENLL NVL IP DLNRDEWIAALPRALVAGFVKTDKD QERA+TSGTTVTF++IEG F+TVASVGDSRC+LES++GEIYYLSADHRLE + EER+RI ASGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGD+DVGEYIVPVP+VKQVKLS++GGRL+ISSDGVWDALSAETAF+CCRG+PPDAAASQIVK+AVG KGLRDDTTCIVID++ PEKP+ PLP PP+KQG K VF SMF+KKSSE SS +KEY EPD VEE+ E+ SA LSERLDTKYPICN+FKLF+CA+CQVEMKPGEG+SI++G N+ K+RPWDGPFLC SCQEKKEAMEG+R G YSSGS+
Sbjct: 1 MSSKGEH-QTVPLSVLLKRELANEKIENPEICHGQASQSKKGEDFTFVKTECQRVVGDEVFTYSVFALFDGHNGPAAAIYSKENLLNNVLACIPSDLNRDEWIAALPRALVAGFVKTDKDFQERAQTSGTTVTFMIIEGWFITVASVGDSRCVLESADGEIYYLSADHRLECSVEERERITASGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDLDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALSAETAFDCCRGVPPDAAASQIVKDAVGMKGLRDDTTCIVIDVRLPEKPNVPLP-PPKKQGGKGVFMSMFRKKSSESSSQIDKEYCEPDVVEEIFEDGSAMLSERLDTKYPICNVFKLFMCAVCQVEMKPGEGISIYAGVSNSGKVRPWDGPFLCVSCQEKKEAMEGKRPSGAGRYSSGSD 430
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D8ZRU8 ((Integrin-linked kinase-associated serine/threonine phosphatase 2C {ECO:0000313|EMBL:TEY45263.1}))
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 341/432 (78.94%), Postives = 387/432 (89.58%), Query Frame = 0
Match: A0A4D8ZRU8 ((Integrin-linked kinase-associated serine/threonine phosphatase 2C {ECO:0000313|EMBL:TEY45263.1}))
HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 341/432 (78.94%), Postives = 387/432 (89.58%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSV-SEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGDSTYSSGSE 431
M +S +HQTVPLSVLLKRELA+EKVE+PE++HGQA+Q KKGED T +KTECQRVLGD VTTY V+ LFDGHNGSAAAIYSKENLL NV+ AIP DLN +EW+AALPRALVAGFVKTDKD QERA+TSGTTVTFV+IEG +TVASVGDSR +LES+EG IYYLSADHRL+ +EEER+RI ASGGEVGRLNTG GT+IGPLRCWPGGLCLSRSIGD+DVGEYIVPVPHVKQVKLSS+GGRL+ISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAV KGLRDDTTCIV+D+QPPEK PP PP+KQG + KSMF+KKSSE +S+ S++E+ EP+ VEE+ EE SA LSERLD+KYP+CNMFKLFICA+CQ E+KPGEG+SIHSGT + KK+RPWDGPFLCSSCQEKK+AMEG+R G S YSSGS+
Sbjct: 1 MLTKSGNHQTVPLSVLLKRELANEKVERPELTHGQASQRKKGEDLTFIKTECQRVLGDGVTTYSVYALFDGHNGSAAAIYSKENLLNNVVNAIPQDLNSEEWVAALPRALVAGFVKTDKDFQERAQTSGTTVTFVIIEGWVLTVASVGDSRGVLESAEGSIYYLSADHRLDCSEEERERITASGGEVGRLNTGAGTEIGPLRCWPGGLCLSRSIGDLDVGEYIVPVPHVKQVKLSSTGGRLIISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVQVKGLRDDTTCIVVDIQPPEKNEPP-KVPPKKQGKRGIKSMFRKKSSESTSLPSKEEHIEPEMVEEMFEEGSAYLSERLDSKYPVCNMFKLFICAVCQAEIKPGEGISIHSGTADLKKVRPWDGPFLCSSCQEKKDAMEGKRASGASRYSSGSD 431
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1R3I8Q2 ((Phosphatase 2C (PP2C)-like protein {ECO:0000313|EMBL:OMO78977.1}))
HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 339/423 (80.14%), Postives = 382/423 (90.31%), Query Frame = 0
Match: A0A1R3I8Q2 ((Phosphatase 2C (PP2C)-like protein {ECO:0000313|EMBL:OMO78977.1}))
HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 339/423 (80.14%), Postives = 382/423 (90.31%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGD 423
MS+R DH QTVPLSVLLKRELA+EK+EKPEI HGQANQSKKGEDFTL+KTECQR +GD VTT+ +GLFDGHNGSAAAIY+KENLL NVL AIP DLNRDEW+AALPRALVAGFVKTDKD QERA+TSGTTVTFV+IEG VTVASVGDSRCILES+EGEIYYLSADHRL+TNEEER+RI ASGGEVGRLNTGGG IGPLRCWPGGLCLSRSIGDMDVGEYIVPVP+VKQVKLS++GGRL+ISSDGVWDALSAE A +CCRGMP DAAA+Q+VKEA+ KGLRDDTTCIV+D+ P EKP+ LP PP+K G ++FK+MF+KK+SE SS ++KEY EPD VEEL EE SA LSERLD KYP+CNMFKLF+CA+CQ+EMKPGEGVSIH+G+ + K+RPWDGPFLCS+CQEKKEAMEG+R GD
Sbjct: 1 MSSRGDH-QTVPLSVLLKRELANEKIEKPEIVHGQANQSKKGEDFTLLKTECQRAMGDGVTTFSCYGLFDGHNGSAAAIYTKENLLTNVLNAIPTDLNRDEWVAALPRALVAGFVKTDKDFQERAQTSGTTVTFVIIEGWVVTVASVGDSRCILESAEGEIYYLSADHRLDTNEEERERITASGGEVGRLNTGGGAGIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALSAEEALDCCRGMPADAAAAQVVKEALQSKGLRDDTTCIVVDILPHEKPAASLP-PPKKPGKRMFKAMFRKKNSESSSHADKEYMEPDVVEELFEEGSAMLSERLDAKYPLCNMFKLFMCAVCQLEMKPGEGVSIHAGSSDKVKLRPWDGPFLCSTCQEKKEAMEGKRPSGD 421
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AQ64 ((Putative Phosphatase 2C family protein isoform 1 {ECO:0000313|EMBL:MPA58205.1}) (3.1.3.16 {ECO:0000313|EMBL:MPA58205.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 344/432 (79.63%), Postives = 385/432 (89.12%), Query Frame = 0
Match: A0A5B7AQ64 ((Putative Phosphatase 2C family protein isoform 1 {ECO:0000313|EMBL:MPA58205.1}) (3.1.3.16 {ECO:0000313|EMBL:MPA58205.1}))
HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 344/432 (79.63%), Postives = 385/432 (89.12%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGRRTFGD-STYSSGSE 431
MS+R +H QTVPLSVLLKRELA+EK+EKPEISHGQA+QSKKGED TL+K++CQRV GD VTTY VF LFDGHNGSAAAIYSKENLL NVL AIP DLN DEW+AALPRALVAGFVKTDKD QE+ARTSGTTVTFV+IEG VTVASVGDSRCILES+EG IYYLSADHRLE +EEER+RI ASGGEVGRLNTGGGT+IGPLRCWPGGLCLSRSIGDMDVGE+IVPVP+VKQ+K+SS GGRL+ISSDGVWDALSAE A +CCRGMP DAAASQ+VKEAV KGLRDDTTCIVID+QPPEK SPPLP P+KQ VF+SMF+K++SE SS +KEY EPD VEEL EE SA LSERLDTKYP+CNMFKLF+CA+CQ+EMKPGEG+SIH + N+ K+RPWDGPFLC CQ+KKEAMEG+R +GD S YSS S+
Sbjct: 1 MSSRGEH-QTVPLSVLLKRELANEKIEKPEISHGQASQSKKGEDLTLLKSDCQRVAGDGVTTYSVFALFDGHNGSAAAIYSKENLLNNVLAAIPSDLNIDEWVAALPRALVAGFVKTDKDFQEKARTSGTTVTFVMIEGWVVTVASVGDSRCILESAEGGIYYLSADHRLECSEEERERITASGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQMKMSSGGGRLIISSDGVWDALSAEMALDCCRGMPADAAASQVVKEAVQVKGLRDDTTCIVIDIQPPEKTSPPLPL-PKKQVKGVFRSMFRKRTSESSSNIDKEYCEPDVVEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQLEMKPGEGISIHKASSNSGKLRPWDGPFLCLCCQKKKEAMEGKRLYGDGSRYSSESD 430
BLAST of XM_017381923.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9R7E9 ((Protein phosphatase, putative {ECO:0000313|EMBL:EEF52429.1}) (3.1.3.16 {ECO:0000313|EMBL:EEF52429.1}))
HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 337/418 (80.62%), Postives = 381/418 (91.15%), Query Frame = 0
Match: B9R7E9 ((Protein phosphatase, putative {ECO:0000313|EMBL:EEF52429.1}) (3.1.3.16 {ECO:0000313|EMBL:EEF52429.1}))
HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 337/418 (80.62%), Postives = 381/418 (91.15%), Query Frame = 0
Query: 1 MSARSDHHQTVPLSVLLKRELASEKVEKPEISHGQANQSKKGEDFTLVKTECQRVLGDDVTTYHVFGLFDGHNGSAAAIYSKENLLANVLGAIPPDLNRDEWIAALPRALVAGFVKTDKDLQERARTSGTTVTFVLIEGLFVTVASVGDSRCILESSEGEIYYLSADHRLETNEEERKRIIASGGEVGRLNTGGGTQIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPHVKQVKLSSSGGRLVISSDGVWDALSAETAFECCRGMPPDAAASQIVKEAVGFKGLRDDTTCIVIDLQPPEKPSPPLPAPPRKQGMKVFKSMFKKKSSEPSSVSEKEYSEPDAVEELVEEESANLSERLDTKYPICNMFKLFICAICQVEMKPGEGVSIHSGTENTKKIRPWDGPFLCSSCQEKKEAMEGR 418
M+AR HQTVPLSVLLKRELA+E+VEKPEI HGQA+QSKKGEDFTL+KTECQRVLGD V+TY VFGLFDGHNGSAAAIY+KENLL NV+ A+PPDLNRDEW+AALPRALVAGFVKTDKD Q RA+TSGTTVTFV+IEG +TVASVGDSRCILES+EG++YYLSADHRLE N EER+RI ASGGEVGRLNTGGG +IGPLRCWPGGLCLSRSIGD+DVGEYIVPVP+VKQVKLS++GGRL+ISSDGVWDALSAE A +CCRGMP +AAA+QIV+EAV FKGLRDDTTCIVID+ PPEKP+ PLPA P+KQ VFKSMF++KSSE SS +KEY+EPD VEEL EE SA L+ERLDTKYP+CNMFKLF+CA+CQVEMKP EG+SIH G N++K+RPWDGPFLCSSCQEK+EAMEG+
Sbjct: 2 MAAR--EHQTVPLSVLLKRELANERVEKPEILHGQASQSKKGEDFTLLKTECQRVLGDGVSTYSVFGLFDGHNGSAAAIYTKENLLNNVIAAMPPDLNRDEWVAALPRALVAGFVKTDKDFQMRAQTSGTTVTFVIIEGWVITVASVGDSRCILESAEGDVYYLSADHRLECNVEERERITASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDVDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALSAEMALDCCRGMPAEAAAAQIVREAVQFKGLRDDTTCIVIDISPPEKPAAPLPA-PKKQVKGVFKSMFRRKSSESSSQVDKEYTEPDVVEELFEEGSAMLAERLDTKYPLCNMFKLFMCAVCQVEMKPEEGISIHVGAANSRKLRPWDGPFLCSSCQEKREAMEGK 416
| Match Name | Stats | Description |
|---|---|---|
| A0A068TZI5 | E-Value: 0.000e+0, PID: 83.29 | PPM-type phosphatase domain-containing protein {EC... [more] |
| A0A6P6UNP0 | E-Value: 0.000e+0, PID: 83.06 | (probable protein phosphatase 2C 12 {ECO:0000313|R... [more] |
| A0A5J5AGF6 | E-Value: 0.000e+0, PID: 80.94 | PPM-type phosphatase domain-containing protein {EC... [more] |
| A0A2R6RN50 | E-Value: 0.000e+0, PID: 80.74 | (Protein like {ECO:0000313|EMBL:PSS31415.1})[more] |
| A0A5B7APC4 | E-Value: 0.000e+0, PID: 80.79 | (Putative Phosphatase 2C family protein isoform 1 ... [more] |
| A0A7J7HS01 | E-Value: 0.000e+0, PID: 80.09 | PPM-type phosphatase domain-containing protein {EC... [more] |
| A0A4D8ZRU8 | E-Value: 0.000e+0, PID: 78.94 | (Integrin-linked kinase-associated serine/threonin... [more] |
| A0A1R3I8Q2 | E-Value: 0.000e+0, PID: 80.14 | (Phosphatase 2C (PP2C)-like protein {ECO:0000313|E... [more] |
| A0A5B7AQ64 | E-Value: 0.000e+0, PID: 79.63 | (Putative Phosphatase 2C family protein isoform 1 ... [more] |
| B9R7E9 | E-Value: 0.000e+0, PID: 80.62 | (Protein phosphatase, putative {ECO:0000313|EMBL:E... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |