Resource Type:
Polypeptide
Name:
XM_017387629.1
Identifier:
XM_017387629.1-protein
Sequence:
MAALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRG
LITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAP
NSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWE
SDVYSELFNERASELGKDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDIT
EVSSFPCSLAIEGSSIEALKAPDDKLKSRSLQIVCMPKSKTKSKKRVPET
HNVALISADKYASRSSMLASVVVSWSPLLQTSEYRLSSPDDSCDCCSILA
IGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAV
SVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELIS
VDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSD
DLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGV
ESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVE
FFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLN
KPVVIWDVVAALLAFKQFAPIYVDHILAKWLRSYVGSNLENAPLQKVVSK
YLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSFVAEPGKGQMGLWL
KLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENW
VNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFES
AEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFA
PRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAAS
PV
Sequence Length:
902
Sequence Checksum:
c9fb59f25246db247967743f71cd8b8c
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017387629.1, derives from mRNA, XM_017387629.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6YNM7 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0
Identity = 503/893 (56.33%), Postives = 639/893 (71.56%), Query Frame = 0
Match: A0A5B6YNM7 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 984.171 bits (2543), Expect = 0.000e+0
Identity = 503/893 (56.33%), Postives = 639/893 (71.56%), Query Frame = 0
Query: 44 MPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDV-YSELFNERASELGKDHDV--DTSTPVMRKNPKRKRRNDIAV------------SDSAND--------------ITEVSSFPCSLAIEGSSIEALKAPDDKLKSRSL-QIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQ-TSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLRSYVGS--NLENAPLQKVVSKYLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSFVAE-PGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
MPFGPRGLIT+P S+PF IGVI+K+DLLSGC+ P RD PCVRSISWSP G A NSGCLLAVCTTEG VKLYR PF +FSAEWVE++DISE LY YL + F E V SE +E+AS+L +H D V+RK KR+R+N +AV S S N+ EV+ FP EGSS+E ++ D LK +L QIV +P +K K K++P N+ LI+AD+YASRS+ML+S+VV+WSP+LQ TS P++ +CCS+LA+GGKSG ISFW+I +PQ YS++++ LVG+L AH +W+TT+ WA+ +SDA N QLLLATGSSDGSVKIW +S ELLK S+ + A FSL E+I+ DSVPVS LSL VP S+ K+LLAVGKGSG+ EVW C+IS KF + GS D H H+VTG+AWAFDG CLYSC+QD+S W L G+SLC+V +PSNT GV+SSTDVPN FDSCFGLA+SPGNLV+ VAR FDA LL+PMYQ+R+QKAAVEFFW GGQQL+ + +F+ EA+ GF +EL+ W+ N + SL+Q+EHL+KP+V+WDV+AAL+AFKQ +P YV+HIL KWL SY+GS L A + S++LSNIT+R+LH LNII RR++L +KADK+N + Q+ + ++ LW++LL SSE+ELRERL+ SFS+V++LVS S N K GYW P GLAQME WV+ H+++ LK+L SE K+ KS+L S +Y A+E CSYCSA VPFES EA+FC+G +C++GV Q HKL RCA SM V TP WFCVCC R +SK AP LF+M +YPSD+ +TL + P C FCGILLQRLQPEFLL+ASPV
Sbjct: 1 MPFGPRGLITIPASKPFPIGVIEKKDLLSGCLLPTCLSRDLRPCVRSISWSPIGFASNSGCLLAVCTTEGCVKLYRMPFCEFSAEWVEVMDISEMLYNYLASIRFGELGVPSSEFSDEQASQLYIEHGHVDDLPISVLRKKYKRRRQNALAVINKDSGTLGDQSSCSGNNRDANPGSTGKLITAFKEVAVFP----HEGSSVEGVEIISDNLKENNLHQIVSVPNTKVKPLKKIPVKCNLPLITADQYASRSAMLSSLVVAWSPILQLTSGIGPVLPNNLPNCCSLLAVGGKSGKISFWRILEPQCYSVMHSRDPTAGLLVGLLQAHNTWITTIGWALYMSDALNSQLLLATGSSDGSVKIWLGHSGELLKSSEVNHAPFSLLKEVITCDSVPVSVLSLIVPRQSSRKMLLAVGKGSGSFEVWICNISANKFDRAGSYDAHDHIVTGLAWAFDGCCLYSCSQDNSVRSWILQGNSLCEVPIPSNTLGVKSSTDVPNVFDSCFGLAVSPGNLVLVVARSFDADLLNPMYQVRTQKAAVEFFWIGGQQLNNSYDRYPEFEVEAYPGFPEKELVYWEHNFLWSLNQYEHLDKPLVVWDVIAALMAFKQSSPKYVEHILNKWLVSYLGSQLGLSTAKILSHASRFLSNITSRQLHLLNIISRRLVLTKLKADKINSKQQNLEGLCDAEEELPLWMELLLSSERELRERLVGFSFSVVLSLVSHSLTNYCKFGYWHPVGLAQMEQWVSLNHDHLQDHLKLLASEVGKLDKSRLSSRCEYAAEEHCSYCSASVPFESTEAAFCRGVKCDDGVGQSHKLGRCAVSMQVCPTTPLWFCVCCQRWASKLAPHTLFTMSKYPSDIKSSTDSSTLEVFTIPFCPFCGILLQRLQPEFLLSASPV 889
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AT71 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 927.161 bits (2395), Expect = 0.000e+0
Identity = 481/856 (56.19%), Postives = 608/856 (71.03%), Query Frame = 0
Match: A0A5J5AT71 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 927.161 bits (2395), Expect = 0.000e+0
Identity = 481/856 (56.19%), Postives = 608/856 (71.03%), Query Frame = 0
Query: 6 FQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDV-YSELFNERASELGKD--HDVDTSTPVMRKNPKRKRRNDIAVSDSANDI--------------------------TEVSSFPCSLAIEGSSIEALKAPDDKLKSRS-LQIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQ-TSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLRSYVGS--NLENAPLQKVVSKYLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASM 828
FQAA+LVASP YPNAVAWS++NLVAVA GH+VTIL P M FGPRGLIT+P S+PF IGVI+++DLLSGC+ P RD PCVRSISWSP GLA NSGCLLAVCTTEGRVKLYRFPF +FSAEWVE++DISE LY YL + F ES + SE +ERA +L D H D V+RK KR+R+N +AV + + I EV+ FP S+ EGS +EA++ D K QIV MP SK K K++PE N+ LI+AD+YASRS+ML+S+VV+WSP+LQ TS SP++ CS+LA+GGKSG ISFW+I +PQ YS++ + LVG+L AH +W+TT+ WA+++SDA N QLLLATGS DGSV IW +S LL S+ S A FSL E+I+ DS+PVS LSL VP S K+LLAVG+GSG+ EVW CDIS KF + GS D H H+VTG+AWAFDG CLYSC+QD+S W L G+SLC V PSNTPGV+SSTD+PN FDSCFGLA+SPGNLV+ VAR FDA LL+PMYQ R+QKAAVEFFW GGQQL+ + +F+ EA+ GF +EL+ W+ N + SL+Q+EHL+K +V+WD++AAL+AFKQ +P YV HIL KWL S +GS L A + S+++S IT+R++H LNII R V+L +KADK+N + Q+ G ++ LW++LL S E+ELRERL+ SFS+V++L+S S N KL YW P GLAQME WV H+++ LK+L SE K+ K +L S+ +Y A+EQCSYCSA V FESAEA+FC+G +C NGV Q HKL RCA SM
Sbjct: 56 FQAAALVASPSYPNAVAWSDDNLVAVASGHLVTILNPAMLFGPRGLITIPASEPFPIGVIERKDLLSGCLLPTCLSRDLRPCVRSISWSPIGLASNSGCLLAVCTTEGRVKLYRFPFCEFSAEWVEVMDISEMLYNYLASIRFGESGIPSSEFSDERALQLYVDRGHADDMPISVLRKKCKRRRQNALAVINKDSGILGDQSSCSGNSKDANPGSTGKLIPAFKEVAGFPYSMLQEGSLVEAVEIISDNPKENDPHQIVSMPNSKAKPLKKIPEKCNLPLITADQYASRSAMLSSLVVAWSPILQLTSGIGPVSPNNLR--CSLLAVGGKSGKISFWRILEPQCYSVMPSKDPTAGLLVGLLQAHNTWITTIGWALNMSDALNPQLLLATGSFDGSVNIWLGHSGVLLNSSEVSHAPFSLLKEVITRDSIPVSILSLIVPAQSPHKMLLAVGRGSGSFEVWTCDISASKFDRAGSYDAHDHIVTGLAWAFDGCCLYSCSQDNSVRSWILKGNSLCAVPFPSNTPGVKSSTDIPNVFDSCFGLAVSPGNLVLVVARSFDADLLNPMYQARTQKAAVEFFWIGGQQLNISYDRYPEFEVEAYPGFPEKELVYWEHNFLWSLNQYEHLDKSLVVWDIIAALMAFKQSSPNYVAHILNKWLVS-LGSQLGLPTANILSHASRFISKITSRQMHLLNIICRHVVLTKLKADKINSKQQNSEDLCGSEELNLWMELLLSCERELRERLVDFSFSVVLSLMSHSLTNYCKLQYWHPVGLAQMEQWVTLNHDHVQDHLKLLASEVGKLDK-RLNSICEYAAEEQCSYCSASVQFESAEAAFCRGVKC-NGVDQSHKLARCAVSM 906
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2MG62 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 897.886 bits (2319), Expect = 0.000e+0
Identity = 476/921 (51.68%), Postives = 610/921 (66.23%), Query Frame = 0
Match: A0A7N2MG62 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 897.886 bits (2319), Expect = 0.000e+0
Identity = 476/921 (51.68%), Postives = 610/921 (66.23%), Query Frame = 0
Query: 3 ALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDVYSELFNERASELGKD-HDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCS-------------LAIEGSSIEAL-KAPDDKLKSRSLQ-IVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKW-LRSYVGSNLE--NAPLQKVVSKYLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSF-VAEPGKG-QMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
A RFQA LVASP YPNAVAWS+ENL+AVA GH+VTIL P PFGPRGLITVP S+PF IGVID++DL SGC+ P RD PCVRS+SWSP G+APNSGCLLAVCTTEGRVKLYR PF DF AEW+E++DIS++LY+YL ++F ESDV S+ KD H D ++ V +K KR++ N T PC + EG ++A+ K DKL+ L I + K K KS ++ E I+A +YASR++ML S+ V+WSPLLQ S S P S+LA+GGKSG IS W+I P+ YSI ++ +VG+L AH SW+T+++WA +SD+SN Q+LLATGSSDGS++IW + ELL S+ F L E+I+ DS+PVS LSL++P S K+LLAVGKGSG+ E+W CDIS RKF K+GS D H H VT +AWAFDG LYSC+QD+ CW L G SL +V PSNTP + SSTDVP+ F SC GLA+SPGNLV+ + R D LLD MYQ ++QKA VEFFW GGQQ D L K D F F +EL W+ NI+ SL Q+EHL+KP+V+WD++AALLAFKQ +V+HIL KW L SY+G N++ + +VS LS I +R+LH LNII RRV+L+++KAD+VN E Q+ V+ +G Q+ +W +LL+ SE+ELRERL+ FS ++L S S+ S+ GYW P GLAQ+E+WV +++ LKVL SE + +K ++ A EQCSYCSA VPFES E FC+G E ++G Q H+L RCA SM V TP WFC+CCNR S+ AP LFSM +YPSD + + L S P+C FCG+LLQR QP+FLL+ASPV
Sbjct: 2 ASRFQAIPLVASPSYPNAVAWSDENLIAVASGHLVTILNPASPFGPRGLITVPNSEPFPIGVIDRKDLFSGCLLPNCLSRDRQPCVRSVSWSPLGMAPNSGCLLAVCTTEGRVKLYRPPFCDFGAEWIEVMDISDRLYEYLTSISFGESDVSCP----NNSDATKDIHAEDPASFVSKKECKRRKINK-------GSQTTGDQLPCQGNSENSNSSSGPYIEREGQGLKAVYKLSSDKLEEGKLHHIGPLSKCKAKSLNKMQENCTHPQITAAQYASRNAMLWSLAVAWSPLLQLSSKLCSIPQIGSSV-SLLAVGGKSGKISLWRIYVPECYSI-EHSRVPTANIVGLLEAHNSWITSISWAFLISDSSNPQVLLATGSSDGSMRIWLGNTEELLNTSEVDRTPFFLLKEVITADSIPVSVLSLSMPAKSLHKMLLAVGKGSGSFELWNCDISDRKFDKIGSFDAHYHAVTDLAWAFDGCSLYSCSQDNFVRCWILRGSSLHEVPFPSNTPRLRSSTDVPDVFISCMGLAVSPGNLVLVMVRNLDLELLDSMYQKKAQKAVVEFFWIGGQQQDLLSKASPLVDVVEFPAFPEKELAYWESNILWSLKQYEHLDKPLVLWDIIAALLAFKQTTSKFVEHILLKWLLSSYIGYNMDLSAEKILPLVSIRLSKINSRKLHLLNIICRRVMLSELKADQVNSEVQNLEVSHGAEGEQVTMWTELLRCSERELRERLVGFGFSAFLSLKSHSTITASRPGYWYPVGLAQLEHWVALNHERVQDQLKVLSSEVGRHEKR--LEYSEHEAAEQCSYCSASVPFESPEVGFCRGVESDSGTGQSHRLPRCAVSMQVCPTTPLWFCICCNRWGSRLAPETLFSMSEYPSDFKSSTESSVLEVPSKPLCPFCGLLLQRRQPDFLLSASPV 907
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438CGM7 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 895.575 bits (2313), Expect = 0.000e+0
Identity = 462/910 (50.77%), Postives = 611/910 (67.14%), Query Frame = 0
Match: A0A438CGM7 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 895.575 bits (2313), Expect = 0.000e+0
Identity = 462/910 (50.77%), Postives = 611/910 (67.14%), Query Frame = 0
Query: 3 ALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESD--VYSELFNERASELGKDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCSLAIEGSSIEALKAPDDKLKSRSLQIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLL-QTSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVES-STDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWL-----RSYVGSNLENAPLQKVVSKYLSNITTRRLHFLNIIIRRVILADMKADKVN--EENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASP 901
A RFQAASLVASP YPNAVAWS+ENL+AVA GH+VTIL P +PFGPRGLIT+P ++PF IGVI+++DL SGC+ RD PCVRSISWS GLAPN+GCLLA+CT EGRVKLYR PF +F EWVE++DI++ LY YL +++F ES+ V S++F + +L ++ + ++ K + R S I E ++ KT+S K++ E + L++ ++YAS ++ML+S+VV+WSP+L E + PD+S +C S+LA+GGKSG ISFW++++P Y+I ++ V L G AH +WVT ++WA+ SDAS+ Q+LLATGS+DGSVKIW YS +LLK S+ + FSL E+I+ DSVPVS L+L VP+ S +K+ LAVGKG G+ EVW CD+S RKF ++GS + H HVVTG+AWAFDG CLYSC+QD+S W+L G+SL +V +P NTPGV++ + D+P F SC+G+A+SPGNLVVAVAR FDAGLL+PMYQ R+QKAA+EFFW GGQQL+ + +F E F GF +ELI W+ N++ LSQ+EHL+KP+V+WD+VAALLAFKQ AP YV+ +L KWL S++G L + S+ SN TTR+LH NII R V+L+++KADK+N + N + ++ LW++LL SE+ELRERL+ +FS V+ L+S + V + W P GLAQME WV H+++ LK+L SE + + K KL SV +Y A EQCSYCSA VPFES E +FCQG +C GV Q HKL RCA M V +P+WFC CC R SSK AP F M +YP D + TL S P C FCGILLQRLQP FLL+ASP
Sbjct: 2 ASRFQAASLVASPSYPNAVAWSDENLIAVATGHLVTILNPALPFGPRGLITIPANKPFPIGVIERQDLYSGCLLSTCLSRDIRPCVRSISWSHIGLAPNAGCLLAICTIEGRVKLYRAPFCEFQVEWVEVVDITDMLYDYLANISFGESETAVSSDVFQPHSDKLEGNNPLQ----IVYKRTSKAR--------SLKKIGEDCTY----------------------------------KTRSLKKIGEDCTLPLVTVNQYASHNAMLSSLVVAWSPVLCLPPETDSAPPDNSSNCFSLLAVGGKSGKISFWRVHEPLSYTIEHSRVPISVMLAGFHQAHNTWVTAISWALLTSDASSPQVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLKEVINADSVPVSVLTLIVPVQSPQKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHVVTGLAWAFDGCCLYSCSQDNSVRSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYGVAVSPGNLVVAVARGFDAGLLNPMYQARTQKAAIEFFWIGGQQLESSTNRNLEFGIENFPGFPKKELIYWECNMLWYLSQYEHLDKPLVVWDIVAALLAFKQSAPKYVELVLVKWLSVSNVESHLG--LSTGNILSHASRTFSNTTTRKLHLFNIICRHVVLSELKADKINCKQPNLEEFGGAEEEKLKLWMELLLCSERELRERLVGFAFSTVLGLMSSLAAKVYRAEGWDPVGLAQMEQWVALNYDHVQDQLKLLASEVRNLDKRKLHSVCEYVAGEQCSYCSACVPFESPEIAFCQGAKCSGGVGQSHKLARCAVCMQVCPASPSWFCTCCQRYSSKLAPPQFFLMPRYPLDFKSSTESCTLNSFSKPFCPFCGILLQRLQPVFLLSASP 863
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Y928 ((uncharacterized protein LOC111289595 isoform X1 {ECO:0000313|RefSeq:XP_022736491.1}))
HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 477/927 (51.46%), Postives = 626/927 (67.53%), Query Frame = 0
Match: A0A6P5Y928 ((uncharacterized protein LOC111289595 isoform X1 {ECO:0000313|RefSeq:XP_022736491.1}))
HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 477/927 (51.46%), Postives = 626/927 (67.53%), Query Frame = 0
Query: 5 RFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDVY-SELFNERASELG-KDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCSLAIEGSSIEALKAPDDKLKSRSL---------------QIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTS-EYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENAPLQKV---VSKYLSNITTRRLHFLNIIIRRVILADMKADKVNE-------ENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
RFQAA+LVASP +PN++AWS+ENL+AVA GH+VTIL P +PFGPRGLITVP S+P+ IGV+ +EDL SGC+ PI+ RD P VRSISWS G+APNSGCLLAVCTTEGRVK+YR PF DF AEW+E+LDI+++LY YL ++F E+D+ SE+ NE G D+ D+ V K KR+R N VS N +E SS S G ++ A +P +++ + L Q V KSK KS K++PE N+ LI+AD+YASR++ML+S+V++WSPLL+ S E L+ ++S +C S+LA+G KSG ISFW+I+ PQ+YSI V+L GIL AH SWVTT++WA+ SD+SN Q+LLATGS+DGSV+IW + ELLK S+ ++A F L E+I++ +VPVS LSL +P S +ILLAVGKGSGA EVW D S +KFH+ GS H VVTG+AWAFDG LYSC+QD+ W+L G SL +V +PS+ PG+ S +D+P+ F SC GL +SP NL VA+ R FD LD MY+ R QKAAVEFFW GGQQ D L FD EAF GFS +EL+ W+ NI+CSL Q+E +K +V+WD++AALLAFK AP YV+H+L KWL S++ ++E++ ++KV V K S +R+LH LNII RRVIL+++KAD++N + SF + Q LW++LL SSE+ELRERL+ SFS +L S S+ SK G+W P G+AQME W+ H+ LKV+ +E K K C + A+EQCSYCSAPVPF+S E + C+G + G QKHKL RCA SM V TP W C CC R ++ AP LF M +Y D S P+ + ++ +S P+C FCGILLQR QPEFLL+A PV
Sbjct: 4 RFQAATLVASPSFPNSIAWSDENLIAVASGHLVTILNPVLPFGPRGLITVPKSEPYPIGVVKREDLASGCLLPITLSRDPRPYVRSISWSNLGMAPNSGCLLAVCTTEGRVKVYRPPFCDFCAEWIEVLDITDRLYNYLSSISFEEADIPPSEISNEPVPTHGCVDNPPDS---VSGKEHKRRRVNTSGVS---NFDSEPSSDQISCFKNGKAVNAGPSPSTEVEGQDLHKVLNTKSGRGKSSHQTVPAIKSKGKSAKKIPEVCNLPLITADQYASRNAMLSSLVLAWSPLLKLSPEICLAPENNSSNCFSLLAVGAKSGKISFWRIHAPQYYSIEQIRAPTAVELTGILQAHNSWVTTISWALLGSDSSNPQVLLATGSTDGSVRIWIGHGEELLKSSEVNNAPFYLLKEIINIYAVPVSMLSL-MPSLSLHQILLAVGKGSGAFEVWIGDKSAKKFHRAGSYGAHDQVVTGLAWAFDGCFLYSCSQDNFVRSWSLIGSSLTEVPIPSSFPGLRSFSDLPDVFISCLGLVVSPSNLAVAMVRCFDVNQLDHMYEARLQKAAVEFFWIGGQQKDILSNTSLGFDIEAFPGFSEKELVYWNSNIICSLKQYEQWDKALVVWDIIAALLAFKGSAPHYVEHVLVKWLSMSFLDLHMEHS-MEKVLLHVCKSFSKAASRQLHLLNIIGRRVILSELKADEINSNLLNLGVDEASFAQD---RQFNLWMELLSSSERELRERLVGFSFSAYRSLTSNSTSCSSKPGHWYPLGIAQMEQWIAHNNCHVSKQLKVMAAEIKTCKSRNYCI--ELEAEEQCSYCSAPVPFDSPEFAVCKGLKSNGGFEQKHKLARCAVSMQVCPTTPLWLCKCCQRWTANLAPETLFMMPKYSLDFSLSPESSLVKVASKPLCPFCGILLQRFQPEFLLSALPV 917
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RFJ9 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0
Identity = 463/918 (50.44%), Postives = 613/918 (66.78%), Query Frame = 0
Match: A0A5N6RFJ9 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0
Identity = 463/918 (50.44%), Postives = 613/918 (66.78%), Query Frame = 0
Query: 3 ALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDV----YSELFNERASELGKDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCSLAI---------EGSSIEALKAPDDKLKSRSLQIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENAPLQKVV--SKYLSNITTRRLHFLNIIIRRVILADMKADKVNEENQSFVAEPGK--GQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
A RFQA +LVASP YPNA+AWS+ENL+AVA GH+VTIL P +PFGPRGLIT+P +PF IGV+D++DLLS C+ P RD PCVRSISWSP G+APNSGCLLAVCTTEGRVKLYR PF DF AEW+E++DIS++LY YL ++F E +V YS+ R ++ D S RK KR++ ++ A I + PCS I EG +E + + +V KS K+ ++ E + I+A++YASR +ML S+ V+WSPLLQ S +L S + S+LA+G +SG+IS WKI P+ YS+ ++ +VG+L AH SW+T+++WA+ SD+S+ Q+LL +GSSDGSV+IW S ELL S+ +S L ++I DSVPVS LSL +P S K+LLAVGKGSG+ EVW CDIS+ +F VGS D H HVVTG+AWAFDG+CLYSC+QD+ W L+G SLC+V +P+NTP + SSTD+P+AF SC G+A+SPGNL VAV R D LL+PMYQ R+QKA VEF+W GQQLD L F E F GF +EL +W+ NI+ SL Q+EHL+KP+V+WD++AALLAFKQ A +V+HI+ KWL +++GSN++ + + ++ S LS I +RRLH LN+ RR++L+++KAD++N + Q+ G Q+ W++LL SE+ELRERL+ SFS N++S S+ S+ GYW P GLAQME WV + H+RN LKVL SE + + + C A EQCSYCSAPVP+ES E FCQG EC + + Q H+L RCA SM V T WFC+CCNR + + AP LFS + D K + + SS P+C FCGILLQRLQP+FLL+ASPV
Sbjct: 2 ASRFQAVALVASPSYPNAIAWSDENLIAVASGHLVTILNPALPFGPRGLITIPTGEPFPIGVVDRKDLLSDCLLPTCLSRDRRPCVRSISWSPLGMAPNSGCLLAVCTTEGRVKLYRPPFCDFGAEWIEVMDISDRLYDYLTSIDFRELNVSCPEYSDATEHRCAQ-------DLSNVNSRKERKRRK-----CTEGAETI--CNQLPCSRKIKDSNASSGPEGQGLETVSETNSNQNLHHFDLV--SKSNAKALIKISEKCTLPQITANQYASRGAMLWSLAVAWSPLLQLSS-KLCSVPQTGSSFSLLALGSRSGIISLWKIFVPECYSVEHSGVPTTATIVGLLQAHNSWITSISWALRASDSSSPQVLLVSGSSDGSVRIWLGNSEELLNSSEVNSTPLILLKKVIVADSVPVSVLSLWMPAKSLHKMLLAVGKGSGSFEVWNCDISSNRFDIVGSYDAHDHVVTGLAWAFDGSCLYSCSQDNFMRSWVLHGSSLCEVPIPANTPHLRSSTDLPDAFISCIGVAVSPGNLAVAVVRNLDLELLNPMYQARAQKAVVEFYWICGQQLDLLSNTSPPFYVEEFPGFPEKELTSWESNILWSLKQYEHLDKPLVVWDIIAALLAFKQTASKFVEHIMLKWLSFAFMGSNVDFSAEKILLHASGSLSKINSRRLHLLNVFCRRIMLSELKADQINSKLQNLGGICGAEGEQLTTWMELLFRSERELRERLVGFSFSAFKNVISHSATTASRSGYWYPDGLAQMEQWVALNREHVRNELKVLASEV-GLHERREC-----IAAEQCSYCSAPVPYESPEVGFCQGAECNSDIGQSHRLPRCAVSMQVCPTTTLWFCICCNRWAWRLAPEPLFSRSECHLDFKSSAKSSVVEVSSKPLCPFCGILLQRLQPDFLLSASPV 896
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Y7V7 ((uncharacterized protein LOC111289595 isoform X2 {ECO:0000313|RefSeq:XP_022736492.1}))
HSP 1 Score: 890.952 bits (2301), Expect = 0.000e+0
Identity = 476/927 (51.35%), Postives = 627/927 (67.64%), Query Frame = 0
Match: A0A6P5Y7V7 ((uncharacterized protein LOC111289595 isoform X2 {ECO:0000313|RefSeq:XP_022736492.1}))
HSP 1 Score: 890.952 bits (2301), Expect = 0.000e+0
Identity = 476/927 (51.35%), Postives = 627/927 (67.64%), Query Frame = 0
Query: 5 RFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDVY-SELFNERASELG-KDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCSLAIEGSSIEALKAPDDKLKSRSL---------------QIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTS-EYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENAPLQKV---VSKYLSNITTRRLHFLNIIIRRVILADMKADKVNE-------ENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
RFQAA+LVASP +PN++AWS+ENL+AVA GH+VTIL P +PFGPRGLITVP S+P+ IGV+ +EDL SGC+ PI+ RD P VRSISWS G+APNSGCLLAVCTTEGRVK+YR PF DF AEW+E+LDI+++LY YL ++F E+D+ SE+ NE G D+ D+ V K KR+R N VS N +E SS S G ++ A +P +++ + L Q V KSK KS K++PE N+ LI+AD+YASR++ML+S+V++WSPLL+ S E L+ ++S +C S+LA+G KSG ISFW+I+ PQ+YSI V+L GIL AH SWVTT++WA+ SD+SN Q+LLATGS+DGSV+IW + ELLK S+ ++A F L E+I++ +VPVS LSL +P S +ILLAVGKGSGA EVW D S +KFH+ GS H VVTG+AWAFDG LYSC+QD+ W+L G SL +V +PS+ PG+ S +D+P+ F SC GL +SP NL VA+ R FD LD MY+ R QKAAVEFFW GGQQ D L FD EAF GFS +EL+ W+ NI+CSL Q+E +K +V+WD++AALLAFK AP YV+H+L KWL S++ ++E++ ++KV V K S +R+LH LNII RRVIL+++KAD++N + SF + Q LW++LL SSE+ELRERL+ SFS +L S S+ SK G+W P G+AQME W+ H+ LKV+ +E K K++ + A+EQCSYCSAPVPF+S E + C+G + G QKHKL RCA SM V TP W C CC R ++ AP LF M +Y D S P+ + ++ +S P+C FCGILLQR QPEFLL+A PV
Sbjct: 4 RFQAATLVASPSFPNSIAWSDENLIAVASGHLVTILNPVLPFGPRGLITVPKSEPYPIGVVKREDLASGCLLPITLSRDPRPYVRSISWSNLGMAPNSGCLLAVCTTEGRVKVYRPPFCDFCAEWIEVLDITDRLYNYLSSISFEEADIPPSEISNEPVPTHGCVDNPPDS---VSGKEHKRRRVNTSGVS---NFDSEPSSDQISCFKNGKAVNAGPSPSTEVEGQDLHKVLNTKSGRGKSSHQTVPAIKSKGKSAKKIPEVCNLPLITADQYASRNAMLSSLVLAWSPLLKLSPEICLAPENNSSNCFSLLAVGAKSGKISFWRIHAPQYYSIEQIRAPTAVELTGILQAHNSWVTTISWALLGSDSSNPQVLLATGSTDGSVRIWIGHGEELLKSSEVNNAPFYLLKEIINIYAVPVSMLSL-MPSLSLHQILLAVGKGSGAFEVWIGDKSAKKFHRAGSYGAHDQVVTGLAWAFDGCFLYSCSQDNFVRSWSLIGSSLTEVPIPSSFPGLRSFSDLPDVFISCLGLVVSPSNLAVAMVRCFDVNQLDHMYEARLQKAAVEFFWIGGQQKDILSNTSLGFDIEAFPGFSEKELVYWNSNIICSLKQYEQWDKALVVWDIIAALLAFKGSAPHYVEHVLVKWLSMSFLDLHMEHS-MEKVLLHVCKSFSKAASRQLHLLNIIGRRVILSELKADEINSNLLNLGVDEASFAQD---RQFNLWMELLSSSERELRERLVGFSFSAYRSLTSNSTSCSSKPGHWYPLGIAQMEQWIAHNNCHVSKQLKVMAAEIKTCKRNYCIEL---EAEEQCSYCSAPVPFDSPEFAVCKGLKSNGGFEQKHKLARCAVSMQVCPTTPLWLCKCCQRWTANLAPETLFMMPKYSLDFSLSPESSLVKVASKPLCPFCGILLQRFQPEFLLSALPV 916
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061G1K1 ((Transducin/WD40 repeat-like superfamily protein, putative {ECO:0000313|EMBL:EOY23695.1}))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 473/928 (50.97%), Postives = 623/928 (67.13%), Query Frame = 0
Match: A0A061G1K1 ((Transducin/WD40 repeat-like superfamily protein, putative {ECO:0000313|EMBL:EOY23695.1}))
HSP 1 Score: 887.871 bits (2293), Expect = 0.000e+0
Identity = 473/928 (50.97%), Postives = 623/928 (67.13%), Query Frame = 0
Query: 3 ALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDVY-SELFNERASELGKDHDVDTSTPVMRKNPKRKRRNDIAVSD--------------SANDITEVSSFPCSLAIEGSSIEALKAPDDKLKSRS-LQIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQ-TSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENA--PLQKVVSKYLSNITTRRLHFLNIIIRRVILADMKADKVNE--------ENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
A RFQAA+LVASP YPN++AWS+ENL+AVA GH+VTIL P +PFGPRGL+TVP S+P+ IGV+ KEDLLSGC+ P + R+ PCVRSISWS G+APNSGCLLAVCTTEG VKLY PF DFSAEW+E+LD++++LY YL ++F E ++ +E+ NE+ S DH D+ V K KR+R N + + ++ D+ SS P S A + L A +L +S Q V KSK KS K++ E ++ LI+AD+YAS +ML+S+VV+WSP+L+ +SE L +DS + S+LA+G KSG ISFW+I+ P++YSI + V+L+GIL H SWVT ++WA+ SD+SN Q+LLATGSSDGSV+IW + ELLK + ++A F L E+I++++VPVS LSL +P S KILLAVGKGSGALEVW DIS +KF++ GS D H VVTG+AWAFDG LYSC+QD+ W+L G SL +V +PS++PG+ S +D+P+ F SC GL +SP NL VA+ R FD LD MY+ R QKAAVEFFW GGQQ D L FD E F GFS +EL+ W+ NI+ SL Q+E+ +KP+V+WD++AALLAFKQ A YVDH+L KWL S V S++E++ + V K S +R+LH LNII RRV+L++MKAD++N E F + Q LW++LL SSE+ELRERL+ SFS ++ S ++ + G W P G+ QME WV H+ LKVL SE + K+++ + A+EQCSYCSAPVPF+S E +FC+G E +G+ QKHKL RCA SM V TP W C CCNR +S AP LF M QY D P+ + ++ S P+C FCGILLQR QPEFLL+A PV
Sbjct: 2 AWRFQAATLVASPSYPNSIAWSDENLIAVASGHIVTILNPALPFGPRGLVTVPKSEPYPIGVVKKEDLLSGCLLPTTLSREPRPCVRSISWSNLGMAPNSGCLLAVCTTEGHVKLYCPPFRDFSAEWIEVLDMTDRLYDYLASISFKEPNIPPTEMSNEQVS----DHPPDS---VSGKECKRRRVNTSGIRNFGLETSCDQTPCYKNSKDVNAGSS-PSSEAKGQGPCKVLNAKSGRLIGKSSHQTVPSFKSKGKSAKKMHEICSLPLITADQYASHGAMLSSLVVAWSPMLKLSSEMCLVPENDSSNWFSLLAVGAKSGKISFWRIHAPEYYSIEQSGPPTAVELIGILQVHNSWVTAISWALLASDSSNPQVLLATGSSDGSVRIWIGHGEELLKSLEVNNAPFYLLKEIININAVPVSVLSL-MPSQSLHKILLAVGKGSGALEVWIGDISVKKFNRAGSYDAHDQVVTGLAWAFDGCFLYSCSQDNFVRSWSLRGSSLTEVAIPSSSPGLRSVSDLPDVFISCLGLVVSPSNLAVAMVRSFDVNQLDHMYEARLQKAAVEFFWIGGQQKDILSNTSLGFDIEGFPGFSEKELVYWESNILWSLKQYEYWDKPLVVWDIIAALLAFKQSASHYVDHVLVKWLSLSLVDSHVEHSIEMILPHVCKSFSKAASRQLHLLNIICRRVLLSEMKADEINSNLLNLGGLEEADFTQD---KQHNLWMELLASSERELRERLVGFSFSAYKSIASNAASCSPEPGQWYPHGIPQMEQWVAHHNCHVHEQLKVLASEIRTCKRTECIEL---EAEEQCSYCSAPVPFDSPEFAFCKGLESTDGIGQKHKLARCAVSMQVCPTTPLWLCKCCNRWTSNLAPETLFMMSQYSIDFRLSPQSSPVKEVSKPLCPFCGILLQRFQPEFLLSALPV 914
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1UXP8 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 879.782 bits (2272), Expect = 0.000e+0
Identity = 463/920 (50.33%), Postives = 612/920 (66.52%), Query Frame = 0
Match: A0A6A1UXP8 (TFIIIC_delta domain-containing protein {ECO:0000259|Pfam:PF12657})
HSP 1 Score: 879.782 bits (2272), Expect = 0.000e+0
Identity = 463/920 (50.33%), Postives = 612/920 (66.52%), Query Frame = 0
Query: 3 ALRFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDVYSELFNERASELGKDHDVDTSTPVMRKNPKRKRRN-------DIAVSDSANDITEVSSFPCSLAIEGSSIEALKAPD-------DKLKSRSLQ-IVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTSEYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENAPLQKV--VSKYLSNITTRRLHFLNIIIRRVILADMKADKVNE--ENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
A RFQA +LVASP YPN++AWS+ENL+AVA GH+VTIL P +PFGPRGLITVP +PF IGV+D++DLLSGC+ P RD PCVRSI+WSP G+APNSGCLLAVCTTEGRVKLYR PF DF AEW+E++DIS++LY YL +NF E DV S N ASE G + S + ++ PKR++ N D+ S N + S +L IE + +K + D+L+ +L +V + +SK S ++ E + I+A++YAS S+ML+S+ V+WSPLLQ S + P S+LA+GGKSG IS W+I P+ YS+ N+ +VG+L AH SWVT+++WA+ SD+SN Q+LL +GSSDGSV++W ELL S+ + S L ++I D+ PVS LSL++P S K+LLAVGKGSG+ EVW CDIS+ KF KVGS D H HVVTG+AWAFDG+CLYSC+QD+ W L+G+SL +V +P NTP + SS D+P+ F SC G+A+SPGNLVVA+ R D LLDPMYQ R+ KA VEF+W GGQQLD L FD F F+ +EL W+ NI SL Q HL+KP+V WD++AALLAFKQ A +V+ IL KWL SY+ S+++ + + + VS+ LS + +R+LH LNII R V+L MKAD+ N EN + + Q+ +W ++L SSE+ELRERL+ SFS I L S + S+ GYW P GLAQME WV + H+R+ LKVL SE + + +L A E+CS+CSA VPF++ E FC+G E N + Q H+L RCA SM + TP WFC+CC+RR+ + AP LFSML YP + + + + S P+C FCGILLQRLQP+FLL+ASPV
Sbjct: 2 ASRFQAVALVASPSYPNSIAWSDENLIAVASGHLVTILNPALPFGPRGLITVPAGEPFPIGVVDRKDLLSGCLLPTCLSRDHRPCVRSIAWSPLGMAPNSGCLLAVCTTEGRVKLYRPPFCDFGAEWIEVMDISDRLYGYLASINFGELDV-SCPENTDASEYGSAEN--PSNFISKREPKRRKTNTGSGATWDLLPCPSKNRDSTAGS---ALYIEMDDGQGMKEMNKVSEIHSDRLEDETLHHVVPVSESKANSLNKIVEKCTLPQITANQYASHSAMLSSIAVAWSPLLQLSSDLCAVPQTGSSI-SLLALGGKSGNISLWRIFVPECYSVENSRVPTTATIVGLLQAHTSWVTSISWALHASDSSNPQVLLTSGSSDGSVRVWLGKIVELLNSSEVNCTSLFLLKKVIIADTAPVSVLSLSMPANSLHKMLLAVGKGSGSFEVWNCDISSDKFDKVGSYDAHDHVVTGLAWAFDGSCLYSCSQDNFARSWILHGNSLYEVPIPLNTPRLRSSADIPDVFTSCNGVAVSPGNLVVAMVRNLDLDLLDPMYQARAHKAVVEFYWIGGQQLDLLSNSSPQFDANEFPSFAEKELTCWESNIHWSLKQCGHLDKPLVPWDLIAALLAFKQTALKFVERILLKWLSFSYMVSDVDLSAEKILPHVSRSLSRVNSRQLHLLNIICRCVMLPGMKADQRNNKLENLGGFCDAEREQLTMWAEVLFSSERELRERLVGFSFSTYITLGSHLASTASRPGYWCPVGLAQMEQWVALNREHVRDKLKVLASEVGR-HEGRLQRSEDLVA-EKCSFCSASVPFKTPEVGFCRGIESNNDIGQSHRLPRCAVSMQLCPATPLWFCICCHRRAFRLAPETLFSMLGYPLEFESSTQTSVVEVRSKPVCPFCGILLQRLQPDFLLSASPV 912
BLAST of XM_017387629.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5Y7Q5 ((uncharacterized protein LOC111289595 isoform X3 {ECO:0000313|RefSeq:XP_022736493.1}))
HSP 1 Score: 879.396 bits (2271), Expect = 0.000e+0
Identity = 468/912 (51.32%), Postives = 610/912 (66.89%), Query Frame = 0
Match: A0A6P5Y7Q5 ((uncharacterized protein LOC111289595 isoform X3 {ECO:0000313|RefSeq:XP_022736493.1}))
HSP 1 Score: 879.396 bits (2271), Expect = 0.000e+0
Identity = 468/912 (51.32%), Postives = 610/912 (66.89%), Query Frame = 0
Query: 5 RFQAASLVASPCYPNAVAWSEENLVAVACGHVVTILTPNMPFGPRGLITVPPSQPFQIGVIDKEDLLSGCMQPISFHRDTSPCVRSISWSPTGLAPNSGCLLAVCTTEGRVKLYRFPFYDFSAEWVEILDISEKLYKYLLDVNFWESDV-YSELFNERASELG-KDHDVDTSTPVMRKNPKRKRRNDIAVSDSANDITEVSSFPCSLAIEGSSIEALKAPDDKLKSRSLQIVCMPKSKTKSKKRVPETHNVALISADKYASRSSMLASVVVSWSPLLQTS-EYRLSSPDDSCDCCSILAIGGKSGMISFWKINKPQHYSIINNTYTNDVQLVGILHAHMSWVTTMNWAVSVSDASNHQLLLATGSSDGSVKIWHCYSAELLKPSKTSSASFSLFHELISVDSVPVSTLSLTVPIASAEKILLAVGKGSGALEVWKCDISTRKFHKVGSDDLHGHVVTGIAWAFDGNCLYSCNQDDSFHCWTLNGDSLCKVTLPSNTPGVESSTDVPNAFDSCFGLALSPGNLVVAVARRFDAGLLDPMYQLRSQKAAVEFFWTGGQQLDKLLKKCSDFDGEAFSGFSTRELINWDFNIMCSLSQHEHLNKPVVIWDVVAALLAFKQFAPIYVDHILAKWLR-SYVGSNLENAPLQKV---VSKYLSNITTRRLHFLNIIIRRVILADMKADKVNE-------ENQSFVAEPGKGQMGLWLKLLKSSEKELRERLIYCSFSIVINLVSQSSENVSKLGYWQPAGLAQMENWVNSQQAHIRNSLKVLKSEFKKIKKSKLCSVGKYTAKEQCSYCSAPVPFESAEASFCQGTECENGVVQKHKLTRCAASMIVNDITPTWFCVCCNRRSSKFAPRALFSMLQYPSDLSKDPKITTLRPSSTPMCVFCGILLQRLQPEFLLAASPV 902
RFQAA+LVASP +PN++AWS+ENL+AVA GH+VTIL P +PFGPRGLITVP S+P+ IGV+ +EDL SGC+ PI+ RD P VRSISWS G+APNSGCLLAVCTTEGRVK+YR PF DF AEW+E+LDI+++LY YL ++F E+D+ SE+ NE G D+ D+ V K KR+R N V + S Q V KSK KS K++PE N+ LI+AD+YASR++ML+S+V++WSPLL+ S E L+ ++S +C S+LA+G KSG ISFW+I+ PQ+YSI V+L GIL AH SWVTT++WA+ SD+SN Q+LLATGS+DGSV+IW + ELLK S+ ++A F L E+I++ +VPVS LSL +P S +ILLAVGKGSGA EVW D S +KFH+ GS H VVTG+AWAFDG LYSC+QD+ W+L G SL +V +PS+ PG+ S +D+P+ F SC GL +SP NL VA+ R FD LD MY+ R QKAAVEFFW GGQQ D L FD EAF GFS +EL+ W+ NI+CSL Q+E +K +V+WD++AALLAFK AP YV+H+L KWL S++ ++E++ ++KV V K S +R+LH LNII RRVIL+++KAD++N + SF + Q LW++LL SSE+ELRERL+ SFS +L S S+ SK G+W P G+AQME W+ H+ LKV+ +E K K C + A+EQCSYCSAPVPF+S E + C+G + G QKHKL RCA SM V TP W C CC R ++ AP LF M +Y D S P+ + ++ +S P+C FCGILLQR QPEFLL+A PV
Sbjct: 4 RFQAATLVASPSFPNSIAWSDENLIAVASGHLVTILNPVLPFGPRGLITVPKSEPYPIGVVKREDLASGCLLPITLSRDPRPYVRSISWSNLGMAPNSGCLLAVCTTEGRVKVYRPPFCDFCAEWIEVLDITDRLYNYLSSISFEEADIPPSEISNEPVPTHGCVDNPPDS---VSGKEHKRRRVNTSGVRGKS---------------------------------SHQTVPAIKSKGKSAKKIPEVCNLPLITADQYASRNAMLSSLVLAWSPLLKLSPEICLAPENNSSNCFSLLAVGAKSGKISFWRIHAPQYYSIEQIRAPTAVELTGILQAHNSWVTTISWALLGSDSSNPQVLLATGSTDGSVRIWIGHGEELLKSSEVNNAPFYLLKEIINIYAVPVSMLSL-MPSLSLHQILLAVGKGSGAFEVWIGDKSAKKFHRAGSYGAHDQVVTGLAWAFDGCFLYSCSQDNFVRSWSLIGSSLTEVPIPSSFPGLRSFSDLPDVFISCLGLVVSPSNLAVAMVRCFDVNQLDHMYEARLQKAAVEFFWIGGQQKDILSNTSLGFDIEAFPGFSEKELVYWNSNIICSLKQYEQWDKALVVWDIIAALLAFKGSAPHYVEHVLVKWLSMSFLDLHMEHS-MEKVLLHVCKSFSKAASRQLHLLNIIGRRVILSELKADEINSNLLNLGVDEASFAQD---RQFNLWMELLSSSERELRERLVGFSFSAYRSLTSNSTSCSSKPGHWYPLGIAQMEQWIAHNNCHVSKQLKVMAAEIKTCKSRNYCI--ELEAEEQCSYCSAPVPFDSPEFAVCKGLKSNGGFEQKHKLARCAVSMQVCPTTPLWLCKCCQRWTANLAPETLFMMPKYSLDFSLSPESSLVKVASKPLCPFCGILLQRFQPEFLLSALPV 872
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6YNM7 | E-Value: 0.000e+0, PID: 56.33 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A5J5AT71 | E-Value: 0.000e+0, PID: 56.19 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A7N2MG62 | E-Value: 0.000e+0, PID: 51.68 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A438CGM7 | E-Value: 0.000e+0, PID: 50.77 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A6P5Y928 | E-Value: 0.000e+0, PID: 51.46 | (uncharacterized protein LOC111289595 isoform X1 {... [more] |
| A0A5N6RFJ9 | E-Value: 0.000e+0, PID: 50.44 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A6P5Y7V7 | E-Value: 0.000e+0, PID: 51.35 | (uncharacterized protein LOC111289595 isoform X2 {... [more] |
| A0A061G1K1 | E-Value: 0.000e+0, PID: 50.97 | (Transducin/WD40 repeat-like superfamily protein, ... [more] |
| A0A6A1UXP8 | E-Value: 0.000e+0, PID: 50.33 | TFIIIC_delta domain-containing protein {ECO:000025... [more] |
| A0A6P5Y7Q5 | E-Value: 0.000e+0, PID: 51.32 | (uncharacterized protein LOC111289595 isoform X3 {... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |