XM_017382568.1

Resource Type: 
Polypeptide
Name: 
XM_017382568.1
Identifier: 
XM_017382568.1-protein
Sequence: 
MTLSSSPPTTILNCKHDVVPPPHPSIPPTPSLGMTSPAFLSLNLLISTLF
STKSSSAIAALRISMILFPLSSRIMLLVMFTRGHLRKFPDVFIFPEDDSQ
AIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSF
GTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYP
GMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDI
DAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEF
FKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLRKVA
Sequence Length: 
337
Sequence Checksum: 
809b7b6d1e3b02546dfaf08086fca189
View location in JBrowse: 
DCARv2_Chr3:23156974..23161885+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017382568.1, derives from mRNA, XM_017382568.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BCC9 (Nudix hydrolase domain-containing protein {ECO:0000259|PROSITE:PS51462} (Fragment))

HSP 1 Score: 427.172 bits (1097), Expect = 8.891e-148
Identity = 198/251 (78.88%), Postives = 220/251 (87.65%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            HLR+F DVFIFP++ S   HFG HV LHP L TPED+T AVGDV++C+GEE+IPGIRNELYPV SSFGT  FFSLERAAAPYFGIKAYGVHMNG+VE+DGQKYLWIGKR + K TYPGMLDHLVAGGLP+GI CG N+VKECEEEAGI  SI+++AIPVG VSYMDID YRYKRDVLFCYDLKL E F+PKNQDGEV SF+LI    VANVIQKT+FFKPNCNLVIIDFLFRHGY++PED GYL+LL SLR
Sbjct:  108 HLRRFQDVFIFPQNSSYGSHFGSHVTLHPVLRTPEDKTKAVGDVVKCIGEELIPGIRNELYPVTSSFGTPVFFSLERAAAPYFGIKAYGVHMNGYVERDGQKYLWIGKRSQVKPTYPGMLDHLVAGGLPHGIPCGKNLVKECEEEAGIPSSISNEAIPVGAVSYMDIDGYRYKRDVLFCYDLKLREGFIPKNQDGEVESFKLIAATHVANVIQKTQFFKPNCNLVIIDFLFRHGYIRPEDFGYLKLLQSLR 358
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4ETZ6 ((nudix hydrolase 20, chloroplastic-like isoform X1 {ECO:0000313|RefSeq:XP_018822873.1}))

HSP 1 Score: 418.698 bits (1075), Expect = 4.203e-144
Identity = 194/251 (77.29%), Postives = 220/251 (87.65%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            HLR+F DVFIFP DDS     G HV LHP L  PEDRT AVGDV++CLGEE+IPGIRNELYPV SSFG++ FFSLERAAAPYFGIKAYGVHMNG+VE+D QK LWIGKR + K+T+PGMLDHLVAGGLP+GISC +N+VKECEEEAGI +SIA++AIPVG VSYMDID YRYKRDVL CYDLKLPESF P+NQDGEV SF+LIP + VANVI++T+FFKPNC+LVIIDFLFRHGY+KPE  GYL+LL SLR
Sbjct:  128 HLRRFKDVFIFPRDDSYGGRIGAHVTLHPMLGKPEDRTGAVGDVVKCLGEELIPGIRNELYPVTSSFGSRVFFSLERAAAPYFGIKAYGVHMNGYVERDRQKLLWIGKRSQGKATFPGMLDHLVAGGLPHGISCAENLVKECEEEAGIPRSIANEAIPVGAVSYMDIDGYRYKRDVLLCYDLKLPESFRPENQDGEVDSFKLIPARHVANVIRRTQFFKPNCSLVIIDFLFRHGYMKPEHFGYLDLLQSLR 378
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4ETY5 ((nudix hydrolase 20, chloroplastic-like isoform X2 {ECO:0000313|RefSeq:XP_018822874.1}))

HSP 1 Score: 418.313 bits (1074), Expect = 5.148e-144
Identity = 194/251 (77.29%), Postives = 220/251 (87.65%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            HLR+F DVFIFP DDS     G HV LHP L  PEDRT AVGDV++CLGEE+IPGIRNELYPV SSFG++ FFSLERAAAPYFGIKAYGVHMNG+VE+D QK LWIGKR + K+T+PGMLDHLVAGGLP+GISC +N+VKECEEEAGI +SIA++AIPVG VSYMDID YRYKRDVL CYDLKLPESF P+NQDGEV SF+LIP + VANVI++T+FFKPNC+LVIIDFLFRHGY+KPE  GYL+LL SLR
Sbjct:  125 HLRRFKDVFIFPRDDSYGGRIGAHVTLHPMLGKPEDRTGAVGDVVKCLGEELIPGIRNELYPVTSSFGSRVFFSLERAAAPYFGIKAYGVHMNGYVERDRQKLLWIGKRSQGKATFPGMLDHLVAGGLPHGISCAENLVKECEEEAGIPRSIANEAIPVGAVSYMDIDGYRYKRDVLLCYDLKLPESFRPENQDGEVDSFKLIPARHVANVIRRTQFFKPNCSLVIIDFLFRHGYMKPEHFGYLDLLQSLR 375
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2L0K3 (Nudix hydrolase domain-containing protein {ECO:0000259|PROSITE:PS51462})

HSP 1 Score: 417.542 bits (1072), Expect = 1.257e-143
Identity = 196/251 (78.09%), Postives = 218/251 (86.85%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            HLR+F DVFIFP+D+S     G HV LHP L TP+DRT AVGDV++ LGEE+IPGIRNELYPV SSFG   FFSLERAAAPYFGIKAYGVHMNG+VEKDGQK+LWIGKR + K TYPGMLDHL AGGLPYGI+CG+N+VKECEEEAGI KSI+ +AIPVGVVSYMDID YRYKRDVLFCYDLKLP SF P+NQDGEV SF+LIPV  VANVIQ+T+FFK NC+LVIIDFLFRHGY+ PE  GYL+LL SLR
Sbjct:  130 HLRRFKDVFIFPQDNSYGGRIGSHVTLHPMLRTPDDRTNAVGDVVKFLGEELIPGIRNELYPVTSSFGAPIFFSLERAAAPYFGIKAYGVHMNGYVEKDGQKFLWIGKRSQMKPTYPGMLDHLAAGGLPYGIACGENLVKECEEEAGIPKSISKEAIPVGVVSYMDIDGYRYKRDVLFCYDLKLPASFRPENQDGEVDSFKLIPVTHVANVIQRTQFFKSNCSLVIIDFLFRHGYMSPEHFGYLDLLQSLR 380
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6S1T8 ((Nudix hydrolase {ECO:0000313|EMBL:PSS36251.1}))

HSP 1 Score: 412.92 bits (1060), Expect = 4.478e-142
Identity = 192/251 (76.49%), Postives = 220/251 (87.65%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            +LR+F +VFIF +++S   H  +HV LHP L TPE+RT AV DV++CLGEE+IPGIRNELYPV SSFG  AFFSLERAAAPYFGIKAYGVHMNG+VE+ G+KYLWIGKR E K TYPGMLDHLVAGGLP+GISCG+N+VKECEEEAGI  SI++ AIPVG VSYMDID YRYKRDVLFCYDL+LPE F+PKNQDGEV SF+LIPV   ANVIQKT+FFKPNCNLVIIDFLFRHG+++PE+ GYL+LL SLR
Sbjct:  117 YLRRFQNVFIFFQNNSYGNHADNHVTLHPNLETPEERTRAVADVVKCLGEELIPGIRNELYPVTSSFGIPAFFSLERAAAPYFGIKAYGVHMNGYVERAGKKYLWIGKRSEVKPTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGIPSSISNGAIPVGAVSYMDIDGYRYKRDVLFCYDLRLPEGFIPKNQDGEVESFKLIPVSDAANVIQKTQFFKPNCNLVIIDFLFRHGFIRPEEFGYLKLLQSLR 367
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0E3N9 ((Nudix hydrolase homolog 20 {ECO:0000313|EMBL:GFY80882.1}))

HSP 1 Score: 412.535 bits (1059), Expect = 1.815e-141
Identity = 190/251 (75.70%), Postives = 220/251 (87.65%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            +LR+F +VFIF +++S   H  +HV LHP L TPE+RT AV DV++CLGEE+IPGIRNELYPV SSFG  AFFSLERAAAPYFGIKAYGVHMNG+VE+ G+KYLWIGKR E K TYPGMLDHLVAGGLP+GISCG+N+VKECEEEAGI  SI++ A+PVG VSYMDID YRYKRDVLFCYDL+LPE F+PKNQDGEV SF+LIPV   ANVI+KT+FFKPNCNLVIIDFLFRHG+++PE+ GYL+LL SLR
Sbjct:  140 YLRRFQNVFIFFQNNSYGNHADNHVTLHPNLATPEERTRAVADVVKCLGEELIPGIRNELYPVTSSFGMPAFFSLERAAAPYFGIKAYGVHMNGYVERAGKKYLWIGKRSEVKPTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGIPSSISNGAMPVGAVSYMDIDGYRYKRDVLFCYDLRLPEGFIPKNQDGEVESFKLIPVADAANVIRKTQFFKPNCNLVIIDFLFRHGFIRPEEFGYLKLLQSLR 390
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2R013 (Nudix hydrolase domain-containing protein {ECO:0000259|PROSITE:PS51462})

HSP 1 Score: 410.609 bits (1054), Expect = 5.489e-141
Identity = 193/251 (76.89%), Postives = 214/251 (85.26%), Query Frame = 0
 
Query:   84 HLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            HLR+F DVFIFP D+S     G HV LHP L TP+DRT AVGDV++CLGEE+IPGIRNELYPV SSFG   FFSLERAAAPYFGIK YGV MNG+VEKDGQK LWIGKR + KSTYPGMLD L AGGLPYGI+CG+N+VKECEEEAGI KSI+ +AIPVG VSYMDID YRYKRDVLFCYDLKLP SF P+NQDGEV SF+LIPV  VA+VIQ+T+FFKPNC+LVIIDFLFRHGY+  E  GYL+LL SLR
Sbjct:  127 HLRRFKDVFIFPRDNSYGGRIGSHVTLHPMLRTPDDRTNAVGDVVKCLGEELIPGIRNELYPVTSSFGAPIFFSLERAAAPYFGIKVYGVQMNGYVEKDGQKLLWIGKRSQMKSTYPGMLDQLAAGGLPYGIACGENLVKECEEEAGIPKSISKEAIPVGAVSYMDIDGYRYKRDVLFCYDLKLPASFRPENQDGEVDSFKLIPVTHVADVIQRTQFFKPNCSLVIIDFLFRHGYMSSEHFGYLDLLQSLR 377
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6SLI2 ((nudix hydrolase 20, chloroplastic-like {ECO:0000313|RefSeq:XP_027066607.1}))

HSP 1 Score: 405.986 bits (1042), Expect = 6.029e-139
Identity = 191/269 (71.00%), Postives = 226/269 (84.01%), Query Frame = 0
 
Query:   68 FPLSSRIMLLVMFT-RGHLRKFPDVFIFPEDDSQ-AIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            F ++++I+  V F    HLRKF DVFIF +D      +FG HV LH +LTT EDRT AVGDV++CLGEE+IPGIRNELYPV+SSFG+  FFS+ERAAAPYFG KAYGVHMNG+VEKDGQKYLW+GKR E K TYPGMLDHLVAGGLP+GISC  N+VKECEEEAGI  SI+ +A+PVG +SYMDID +R+KRDV+FCYDLKLPE F+P+N+DGEV SF+L+PV  VAN+I+ TEFFK NCNLVIIDFLFRHGY+ PE+ GYL+LL SLR
Sbjct:  120 FVIANQIVGYVHFGFADHLRKFRDVFIFQKDTKAFGSNFGCHVTLHSSLTTAEDRTRAVGDVVKCLGEELIPGIRNELYPVVSSFGSPIFFSVERAAAPYFGTKAYGVHMNGYVEKDGQKYLWVGKRSEVKPTYPGMLDHLVAGGLPHGISCEKNLVKECEEEAGIPSSISGRAVPVGAISYMDIDGHRFKRDVMFCYDLKLPEGFIPRNEDGEVESFKLVPVTHVANIIRSTEFFKANCNLVIIDFLFRHGYITPENIGYLKLLQSLR 388
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068U6X3 (Nudix hydrolase domain-containing protein {ECO:0000259|PROSITE:PS51462})

HSP 1 Score: 405.986 bits (1042), Expect = 6.029e-139
Identity = 191/269 (71.00%), Postives = 226/269 (84.01%), Query Frame = 0
 
Query:   68 FPLSSRIMLLVMFT-RGHLRKFPDVFIFPEDDSQ-AIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNELYPVMSSFGTQAFFSLERAAAPYFGIKAYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            F ++++I+  V F    HLRKF DVFIF +D      +FG HV LH +LTT EDRT AVGDV++CLGEE+IPGIRNELYPV+SSFG+  FFS+ERAAAPYFG KAYGVHMNG+VEKDGQKYLW+GKR E K TYPGMLDHLVAGGLP+GISC  N+VKECEEEAGI  SI+ +A+PVG +SYMDID +R+KRDV+FCYDLKLPE F+P+N+DGEV SF+L+PV  VAN+I+ TEFFK NCNLVIIDFLFRHGY+ PE+ GYL+LL SLR
Sbjct:  120 FVIANQIVGYVHFGFADHLRKFRDVFIFQKDTKAFGSNFGCHVTLHSSLTTAEDRTRAVGDVVKCLGEELIPGIRNELYPVVSSFGSPIFFSVERAAAPYFGTKAYGVHMNGYVEKDGQKYLWVGKRSEVKPTYPGMLDHLVAGGLPHGISCEKNLVKECEEEAGIPSSISGRAVPVGAISYMDIDGHRFKRDVMFCYDLKLPEGFIPRNEDGEVESFKLVPVTHVANIIRSTEFFKANCNLVIIDFLFRHGYITPENIGYLKLLQSLR 388
[Close]
BLAST of XM_017382568.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4M1U3 (Nudix hydrolase domain-containing protein {ECO:0000259|PROSITE:PS51462} (Fragment))

HSP 1 Score: 404.831 bits (1039), Expect = 1.927e-138
Identity = 195/271 (71.96%), Postives = 224/271 (82.66%), Query Frame = 0
 
Query:   83 GHLRKFPDVFIFPEDDSQAIHFGDHVRLHPALTTPEDRTYAVGDVIECLGEEMIPGIRNE----------LYPVMSSFGTQAFFSLERAAAPYFGIK---------AYGVHMNGFVEKDGQKYLWIGKRDESKSTYPGMLDHLVAGGLPYGISCGDNIVKECEEEAGIVKSIASQAIPVGVVSYMDIDAYRYKRDVLFCYDLKLPESFVPKNQDGEVGSFRLIPVQLVANVIQKTEFFKPNCNLVIIDFLFRHGYLKPEDSGYLELLHSLR 334
            GHL+KF DVF+F +++S + H G+HV LHP LTTP++RT AV DV+ CLGE++IPGIRNE          LYPV SSFGT  FFSLERAAAPYFGIK         AYGVHMNG+VE+ GQKYLWIGKR E K TYPGMLDHLVAGGLP+GI+CGDNIVKECEEEAGI  SI+++AIPVG VSYMDID YRYKRDVLFCYDLKLPE F+P+NQDGEV SF+LIPV  VANVI+KT +FKPNCNLVIIDFLFRHG+++PE+ GYL+LL SLR
Sbjct:  122 GHLQKFCDVFVFHQNNSHSHHAGNHVTLHPMLTTPDERTTAVADVVRCLGEKLIPGIRNEANYEYVDFKQLYPVTSSFGTPVFFSLERAAAPYFGIKSDTYPLELEAYGVHMNGYVERAGQKYLWIGKRSEGKPTYPGMLDHLVAGGLPHGIACGDNIVKECEEEAGIPSSISNEAIPVGAVSYMDIDGYRYKRDVLFCYDLKLPEGFIPENQDGEVESFKLIPVADVANVIRKTGYFKPNCNLVIIDFLFRHGFIRPEEFGYLKLLQSLR 392
Match NameStatsDescription
A0A5B7BCC9E-Value: 8.891e-148, PID: 78.88Nudix hydrolase domain-containing protein {ECO:000... [more]
A0A2I4ETZ6E-Value: 4.203e-144, PID: 77.29(nudix hydrolase 20, chloroplastic-like isoform X1... [more]
A0A2I4ETY5E-Value: 5.148e-144, PID: 77.29(nudix hydrolase 20, chloroplastic-like isoform X2... [more]
A0A7N2L0K3E-Value: 1.257e-143, PID: 78.09Nudix hydrolase domain-containing protein {ECO:000... [more]
A0A2R6S1T8E-Value: 4.478e-142, PID: 76.49(Nudix hydrolase {ECO:0000313|EMBL:PSS36251.1})[more]
A0A7J0E3N9E-Value: 1.815e-141, PID: 75.70(Nudix hydrolase homolog 20 {ECO:0000313|EMBL:GFY8... [more]
A0A7N2R013E-Value: 5.489e-141, PID: 76.89Nudix hydrolase domain-containing protein {ECO:000... [more]
A0A6P6SLI2E-Value: 6.029e-139, PID: 71.00(nudix hydrolase 20, chloroplastic-like {ECO:00003... [more]
A0A068U6X3E-Value: 6.029e-139, PID: 71.00Nudix hydrolase domain-containing protein {ECO:000... [more]
A0A6A4M1U3E-Value: 1.927e-138, PID: 71.96Nudix hydrolase domain-containing protein {ECO:000... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.