XM_017381888.1

Resource Type: 
Polypeptide
Name: 
XM_017381888.1
Identifier: 
XM_017381888.1-protein
Sequence: 
MLLRLFLTSPVVIVGIYFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYK
IPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDS
DQVVTDTFLSARVYWTNEKSKTGSDTLVLKIRRRDKRRILRPYIQHIHTV
FDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNK
VKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYD
IYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGIL
NFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAF
KNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALK
SVITAMQSNMAARVVNKIPRSASARVGMEESGESAGLYSESVHTVREFRK
LYGLFRSKSSRKESMDVDLQDKDYQRQSS
Sequence Length: 
479
Sequence Checksum: 
3fb042af4efca2e5a5c1eb38c6f86cdc
View location in JBrowse: 
DCARv2_Chr3:25797029..25798468+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017381888.1, derives from mRNA, XM_017381888.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B188 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})

HSP 1 Score: 734.176 bits (1894), Expect = 0.000e+0
Identity = 351/455 (77.14%), Postives = 402/455 (88.35%), Query Frame = 0
 
Query:   21 RLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIPRSASARVGMEESGESAGLYS-ESVHTVREFRKLYGLFRSKSSRKESMDVDLQDKD 473
            R +SKTSLL+I KKWWRLLEDSC V+QFYK+P+FN+HMQENQLY KV TYLNSL  VEDS+YANLF+GNKSN+I +VLDS+QVVTDTFLSARVYW NEK +  GS  LVLKIRR DKRRILRPY+Q+I TVFDE EQR KE+KL++NAE +P++NGRW S+PFTHPSTI+T  +DADLKNKVKSDLE+FLKSKQYY RLGRVWKRSYLLCGPSGTGKSSF+AGM+KFL YD+YDID+ KV DDSDLKMLLL+TT+KSMIVIEDLDR+L EKSTAV+LSGILNFMDG  S CGEERVMVFTMNSKD VDP VLRPGRIDVH+QFPLCDF AFK LANS+LGLKEHKLFPQVEEIFQ+G SLSPAEIGEIMISNR+SP+RALKSVITA+Q+N   R  +K+ +SAS R  +EE+GES   +  ESVH+VREFRKLYGL R +SSRKES+D+D  +K+
Sbjct:   27 RFLSKTSLLYILKKWWRLLEDSCFVYQFYKVPQFNEHMQENQLYRKVSTYLNSLPFVEDSDYANLFSGNKSNEINVVLDSNQVVTDTFLSARVYWKNEKCEPNGSIALVLKIRRNDKRRILRPYLQNILTVFDEIEQRGKEIKLFVNAEAEPQKNGRWRSIPFTHPSTIDTVTMDADLKNKVKSDLESFLKSKQYYHRLGRVWKRSYLLCGPSGTGKSSFVAGMAKFLCYDVYDIDLSKVSDDSDLKMLLLQTTNKSMIVIEDLDRYLSEKSTAVSLSGILNFMDGILSCCGEERVMVFTMNSKDHVDPTVLRPGRIDVHVQFPLCDFPAFKTLANSYLGLKEHKLFPQVEEIFQTGASLSPAEIGEIMISNRNSPSRALKSVITALQTNGDGRGSSKMSQSASGR-AVEEAGESGSFFCRESVHSVREFRKLYGLLRMRSSRKESVDLDSVEKE 480
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B3M4 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 346/477 (72.54%), Postives = 410/477 (85.95%), Query Frame = 0
 
Query:    5 LFLTSPVVIVGI----YFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSKTGSDT---LVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIPRSASARVGMEESGESAGLYS-ESVHTVREFRKLYGLFRSKSSRKESMDVDLQDKD 473
            +F  +P ++ G+    YFLLR +SKTSL ++  KWWR L+DSC+V+QFYK+P+FN+H QENQL+ KV TYLNSL  VEDS+YANLF+GNKSN+I +VLDS+Q V DTFLSARVYWT EK +    T   LVLKIR+ DKRRILRPY+QHIHTVFDE EQR+KEVKLYINAE +P++NGRW S+PFTHPSTI+T  +DADLKNKVKSDLE+FLKSKQYY RLGRVWKRSYLL GPSGTGKSSF+AGM++FL YD+YDID+ KV+DDSDLKMLL++TT+KSMIVIEDLDR+L +KSTAV+LSGILNFMDG  S CGEERVMVFTMN KD++DP VLRPGRIDVHI FPLCDFSAFK LANS+LGLKEHKLFPQVEEIFQ+G +LSPAEIGEIMISNR+SP+RALKSVITA+Q+N   R  +K+ +SAS R  +EE+GES   +  ESVH+VREFRKLYGL R +SSRKES+D+D  +K+
Sbjct:    1 MFPANPFLLFGVIIVFYFLLRFLSKTSLFYLLNKWWRWLQDSCYVYQFYKVPQFNEHTQENQLFRKVSTYLNSLPFVEDSDYANLFSGNKSNEINVVLDSNQAVIDTFLSARVYWTQEKCEPNGSTSRALVLKIRKNDKRRILRPYLQHIHTVFDEIEQRKKEVKLYINAEAEPQKNGRWRSIPFTHPSTIDTVAMDADLKNKVKSDLESFLKSKQYYHRLGRVWKRSYLLYGPSGTGKSSFVAGMARFLCYDVYDIDLSKVLDDSDLKMLLIQTTNKSMIVIEDLDRYLTDKSTAVSLSGILNFMDGILSCCGEERVMVFTMNCKDQIDPTVLRPGRIDVHIHFPLCDFSAFKILANSYLGLKEHKLFPQVEEIFQTGATLSPAEIGEIMISNRNSPSRALKSVITALQTNGDGRGSSKMSQSASGR-AVEEAGESGSFFCRESVHSVREFRKLYGLLRMRSSRKESVDLDSVEKE 476
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4D6B9 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})

HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 338/487 (69.40%), Postives = 406/487 (83.37%), Query Frame = 0
 
Query:    5 LFLTS-PVVIVGI-----YFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSKTGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSN-----MAARVVNKIPRSASARVGMEESGESAGLYS-ESVHTVREFRKLYGLFRSKSSRKESMDVDLQDKDYQRQSS 479
            +FL+S P++++G+     Y LLR + KTS+L+  KKWWRL+ED  HV+QFYK+P+FN+ MQENQLY +V  YLNSLSS+EDS++ANLF+GNKSN+I + +D +Q+V DTFLSARVYW+ E+  + S  LVLKIRR DKR+ILRPY+QH+H +FDE EQRRKEVKLYINA  +PERNGRW S+PFTHPSTIET  +D+DLKNK+KSDLE+FLKSKQYY RLGRVWKRSYLL GPSGTGKSSFIAGM+KFL YD+YDID+ KVI+DSDLKMLLL+TT+KSMIVIEDLDR+L EKSTAV+LSGILNFMDG  S CGEERVMVFTMN KDR+DP VLRPGRIDVHI FPLCDFSAFK LANSHLGLKEHKLF Q+EE+FQ+G SLSPAEIGEIMISNR+SP+RALK VI+A+Q+N        RV  ++  S S R  +EE GE   ++  E VHT+REFRKLYGL R +S RK+SMD+D  +K+  +Q +
Sbjct:    1 MFLSSNPILLLGLIITVSYLLLRFLHKTSILYTLKKWWRLIEDRSHVYQFYKVPQFNELMQENQLYRRVFAYLNSLSSIEDSDFANLFSGNKSNEINLFIDPNQIVVDTFLSARVYWSCERG-SRSRALVLKIRRSDKRKILRPYLQHVHAMFDEIEQRRKEVKLYINAGDEPERNGRWRSIPFTHPSTIETVAMDSDLKNKIKSDLESFLKSKQYYHRLGRVWKRSYLLYGPSGTGKSSFIAGMAKFLCYDVYDIDLSKVINDSDLKMLLLQTTNKSMIVIEDLDRYLAEKSTAVSLSGILNFMDGIISCCGEERVMVFTMNGKDRIDPTVLRPGRIDVHIHFPLCDFSAFKTLANSHLGLKEHKLFSQIEEVFQTGSSLSPAEIGEIMISNRTSPSRALKCVISALQTNGDGSRGMGRVGQRLGESTSGRF-VEECGEPGSIFCREGVHTMREFRKLYGLLRMRSGRKDSMDLDSVEKENSKQET 485
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q997 ((AAA-ATPase {ECO:0000313|EMBL:PSS04482.1}))

HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 340/484 (70.25%), Postives = 400/484 (82.64%), Query Frame = 0
 
Query:    5 LFLTSPVVIVGI----YFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSKT-GSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSN-----MAARVVNKIPRSASARVGMEESGESAGLYS-ESVHTVREFRKLYGLFRSKSSRKESMDVDLQDKDYQRQ 477
            +F  +P++++G+    Y +LR + K+S L I KKWWR++ED CHV QFYK+P+FN+HMQENQLY KV  YLNSL+S EDS++ANLF+GNKSN+I +V D DQ V DTFLSARV WTNEK  + GS  LVLKIRR DKRRILRPY+QHIHTVFDE EQRRKEVKLYINAET PE+NGRW SVPF+HP TI+   + ADLK KVKSDLE+FLKSKQYY RLGRVWKRSYLL GPSGTGKSSF+AGM+KFL YD+YDI++  V+DDSDLKMLLL+TT+KS+IVIEDLDR+L EKSTAV+LSGILNFMDG  S CGEERVMVFTMN KD++DP+VLRPGRIDVH+ FP CDFSAFK LANS+LGLKEHKLFPQVEEIFQ+G SLSPAEIGEIMISNR+SP+RALKSVITA+Q+N       ARV   +  S+S R   EE GES   +S E+VH +++FRKLYGL R +S RK SMD+D  +K+  R 
Sbjct:   23 MFPVNPILLLGLLVVSYLVLRFLYKSSALHIIKKWWRVIEDRCHVHQFYKVPQFNEHMQENQLYRKVSVYLNSLASGEDSDFANLFSGNKSNEINVVFDPDQTVIDTFLSARVRWTNEKGVSDGSRALVLKIRRNDKRRILRPYLQHIHTVFDEIEQRRKEVKLYINAETNPEKNGRWRSVPFSHPGTIDAVAMQADLKTKVKSDLESFLKSKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAGMAKFLCYDVYDINLSNVVDDSDLKMLLLQTTNKSLIVIEDLDRYLAEKSTAVSLSGILNFMDGILSCCGEERVMVFTMNVKDQIDPSVLRPGRIDVHVHFPPCDFSAFKTLANSYLGLKEHKLFPQVEEIFQTGSSLSPAEIGEIMISNRTSPSRALKSVITALQTNAEHGRAPARVGQCLTASSSGR---EELGESGSFFSRENVHAMKDFRKLYGLLRLRSGRKSSMDLDSTEKENSRH 503
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RSF8 ((AAA-ATPase {ECO:0000313|EMBL:PSS32972.1}))

HSP 1 Score: 702.205 bits (1811), Expect = 0.000e+0
Identity = 340/483 (70.39%), Postives = 399/483 (82.61%), Query Frame = 0
 
Query:    5 LFLTSPVVIVGI----YFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSKT-GSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNM-----AARVVNKIPRSASARVGMEESGESAGLYSESVHTVREFRKLYGLFRSKSSRKESMDVDLQDKDYQRQ 477
            +F  +P++++G+    Y +LR + K+S L    KWWR +ED CHV QFYK+P+FN+HMQENQLY KV  YLNSL+SVEDS++ANLF+GNKSN+I +VLD DQ V DTFLSARV+WTNEKS + GS  LVLKIRR DKRRILRPY+QHIHTVFDE EQ RKEVKLYINAET PERNGRW SVPF+HP+TI+   ++ADLK KVKSDLE+FLKSKQYY RLGRVWKRSYLL GPSGTGKSSF+AGM+KFL YD+YDI++  V+DDSDLKMLLL+TT+KS+IVIEDLDR+L EKSTAV+LSGILNFMDG FS CGEERVMVFTMN KD++DP VLRPGRIDVH+ FPLCDFSAFK LANS+LGLKEHKLFPQVEEIFQ+G SLSPAEIGEIMISNR+SP+RALKSVITA+Q+N      +ARV  ++  S+S R   EE  ES   +S     V+E RKLYGL R +S RK SMD+D  +K+  R 
Sbjct:    1 MFPANPILLLGLIVVSYLVLRFLYKSSALHRINKWWRWIEDWCHVHQFYKVPQFNEHMQENQLYRKVSVYLNSLASVEDSDFANLFSGNKSNEINVVLDPDQTVIDTFLSARVHWTNEKSASDGSRALVLKIRRNDKRRILRPYLQHIHTVFDEMEQIRKEVKLYINAETDPERNGRWRSVPFSHPATIDAVAMEADLKTKVKSDLESFLKSKQYYHRLGRVWKRSYLLYGPSGTGKSSFVAGMAKFLCYDVYDINLSNVVDDSDLKMLLLQTTNKSLIVIEDLDRYLAEKSTAVSLSGILNFMDGIFSCCGEERVMVFTMNVKDQIDPTVLRPGRIDVHVHFPLCDFSAFKTLANSYLGLKEHKLFPQVEEIFQTGSSLSPAEIGEIMISNRTSPSRALKSVITALQTNAERSRESARVGQRLTASSSGR---EEPIESGSFFSR--ENVKEVRKLYGLLRLRSGRKSSMDLDSVEKENSRH 478
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B509 (AAA domain-containing protein {ECO:0000259|SMART:SM00382})

HSP 1 Score: 686.411 bits (1770), Expect = 0.000e+0
Identity = 329/421 (78.15%), Postives = 371/421 (88.12%), Query Frame = 0
 
Query:   21 RLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIP----RSASARVGMEESGESAG 436
            R +SKTSLL+I KKWWRLLEDSC V+QFYK+P+FN+HMQENQLY KV TYLNSL  VEDS+YANLF+GNKSN+I +VLDS+QVVTDTFLSARVYW NEK +  GS  LVLKIRR DKRRILRPY+Q+I TVFDE EQR KE+KL++NAE +P++NGRW S+PFTHPSTI+T  +DADLKNKVKSDLE+FLKSKQYY RLGRVWKRSYLLCGPSGTGKSSF+AGM+KFL YD+YDID+ KV DDSDLKMLLL+TT+KSMIVIEDLDR+L EKSTAV+LSGILNFMDG  S CGEERVMVFTMNSKD VDP VLRPGRIDVH+QFPLCDF AFK LANS+LGLKEHKLFPQVEEIFQ+G SLSPAEIGEIMISNR+SP+RALKSVITA+Q++   R  NKI     +SAS R  +EESGE  G
Sbjct:   27 RFLSKTSLLYILKKWWRLLEDSCFVYQFYKVPQFNEHMQENQLYRKVSTYLNSLPFVEDSDYANLFSGNKSNEINVVLDSNQVVTDTFLSARVYWKNEKCEPNGSIALVLKIRRNDKRRILRPYLQNILTVFDEIEQRGKEIKLFVNAEAEPQKNGRWRSIPFTHPSTIDTVTMDADLKNKVKSDLESFLKSKQYYHRLGRVWKRSYLLCGPSGTGKSSFVAGMAKFLCYDVYDIDLSKVSDDSDLKMLLLQTTNKSMIVIEDLDRYLSEKSTAVSLSGILNFMDGILSCCGEERVMVFTMNSKDHVDPTVLRPGRIDVHVQFPLCDFPAFKTLANSYLGLKEHKLFPQVEEIFQTGASLSPAEIGEIMISNRNSPSRALKSVITALQTSGDGRGSNKIAQRLSQSASGR-SVEESGEPXG 446
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7B1P7 (AAA domain-containing protein {ECO:0000259|SMART:SM00382} (Fragment))

HSP 1 Score: 686.026 bits (1769), Expect = 0.000e+0
Identity = 329/442 (74.43%), Postives = 380/442 (85.97%), Query Frame = 0
 
Query:    5 LFLTSPVVIVGI----YFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIP----RSASARVGMEESGESAGL 437
            +F  +P ++ G+    YFLLR +SKTSL ++  KWWR L+DSC+V+QFYK+P+FN+H QENQL+ KV TYLNSL  VEDS+YANLF+GNKSN+I +VLDS+QVVTDTFLSARVYW NEK +  GS  LVLKIRR DKRRILRPY+Q+I TVFDE EQR KE+KL++NAE +P++NGRW S+PFTHPSTI+T  +DADLKNKVKSDLE+FLKSKQYY RLGRVWKRSYLLCGPSGTGKSSF+AGM+KFL YD+YDID+ KV DDSDLKMLLL+TT+KSMIVIEDLDR+L EKSTAV+LSGILNFMDG  S CGEERVMVFTMNSKD VDP VLRPGRIDVH+QFPLCDF AFK LANS+LGLKEHKLFPQVEEIFQ+G SLSPAEIGEIMISNR+SP+RALKSVITA+Q++   R  NKI     +SAS R  +EESGE   L
Sbjct:    1 MFPANPFLLFGVIIVFYFLLRFLSKTSLFYLLNKWWRWLQDSCYVYQFYKVPQFNEHTQENQLFRKVSTYLNSLPFVEDSDYANLFSGNKSNEINVVLDSNQVVTDTFLSARVYWKNEKCEPNGSIALVLKIRRNDKRRILRPYLQNILTVFDEIEQRGKEIKLFVNAEAEPQKNGRWRSIPFTHPSTIDTVTMDADLKNKVKSDLESFLKSKQYYHRLGRVWKRSYLLCGPSGTGKSSFVAGMAKFLCYDVYDIDLSKVSDDSDLKMLLLQTTNKSMIVIEDLDRYLSEKSTAVSLSGILNFMDGILSCCGEERVMVFTMNSKDHVDPTVLRPGRIDVHVQFPLCDFPAFKTLANSYLGLKEHKLFPQVEEIFQTGASLSPAEIGEIMISNRNSPSRALKSVITALQTSGDGRGSNKIAQRLSQSASGR-SVEESGEPGSL 441
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6KNR1 ((Aaa-atpase {ECO:0000313|EMBL:OIT26504.1}))

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 319/475 (67.16%), Postives = 392/475 (82.53%), Query Frame = 0
 
Query:   11 VVIVGIYFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIPR----SASARVGMEESGESAGLYSESVHTVREFRKLYGLFRSKSSRKE-SMDVDLQDKDYQRQSS 479
            + I+   FLL+ V KTSL+ I KKWWRL ED C+V+QFY++P+FN +MQENQLY KV TYLNSL  VEDS++ NLF+G+KSN+I +VLDS+Q+V D FLSARV W NE+ + TG  +LV+KIR+ DKRRIL+PY+QHIH+VFDE EQR+KEV+L++N + +P+RNGRW SVPFTHP+T ET V+DADLKNKVKSDLE F KSKQYY RLG+VWKRSYLL GPSGTGKS+FIAG++  LNYD+YD+D+ KV DDSDLKMLLL+TT+KS+IVIEDLD +L  KSTAV+LSGILNFMDG FS CGEER+M+FT+N+KD++DP VLRPGRIDVHI FPLCDF+AFK+LANSHLGLK+HKLFPQVEEIFQ+G  LSPAEIGEIMISNRSSPTRALKSVI+A+  N  +R  N+  R    S S R  +EE+G+S G++ +    VR+F+KLYGL R +S RK+ S + D  DKD  R  +
Sbjct:    6 IAIIASSFLLKFVLKTSLVQILKKWWRLFEDGCYVYQFYRVPQFNHNMQENQLYRKVCTYLNSLPCVEDSDFTNLFSGDKSNEINLVLDSNQIVVDNFLSARVCWINEQDENTGLKSLVMKIRKNDKRRILQPYLQHIHSVFDEIEQRKKEVRLFLNVDNEPQRNGRWRSVPFTHPATFETIVMDADLKNKVKSDLENFQKSKQYYHRLGKVWKRSYLLYGPSGTGKSTFIAGVANMLNYDVYDVDLSKVTDDSDLKMLLLQTTNKSLIVIEDLDSYLGNKSTAVSLSGILNFMDGIFSCCGEERIMIFTVNNKDQIDPTVLRPGRIDVHIHFPLCDFNAFKSLANSHLGLKDHKLFPQVEEIFQTGAVLSPAEIGEIMISNRSSPTRALKSVISALHINTESRAANRHARRLSESGSVRT-VEETGDS-GIFCKD--GVRDFKKLYGLLRIRSGRKDPSFEFDTSDKDNSRHDN 476
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W788 ((AAA-ATPase At2g46620-like {ECO:0000313|RefSeq:XP_027110002.1}))

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 313/481 (65.07%), Postives = 395/481 (82.12%), Query Frame = 0
 
Query:    5 LFLTSPV----VIVGIYFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIPRSASARVGMEESGESAGLYSES-VHTVREFRKLYGLFRSKSSRKESMDVDLQDKDYQRQSS 479
            +F  +P+    +IV  + + R +S+TS+L IA  WWR L D  +V+Q Y++P+FNDHMQENQLY KV TYL+SL +VEDS++ NLF+G K N+I +VLD +Q+V D FL AR++W N+K   +G  +LVLKIR+ DKRRILRPY+QHIHTVF+E EQR K+VKLYIN E +P+RNGRW SVPFTHP+TI++ V+D+DLKNKVKSDLE+FLKSKQYY RLGRVWKRSYLL GPSGTGKS+FIA M+KFL+YD+YD+D+ K+  DSDL+ LLL+TTSKS+IV+EDL+R L  KSTAV+LSGILNFMDG  S CGEERVMVFTMN KD VDPA+LRPGRIDVH++FPLCDF+AFK+LANSHLG+KEHKLFPQVEE+FQSG SLSPAEIGE+MI+NR+SP+RALKSVI+A+Q+N   ++  ++ R+ S R   EESG+S  L  ++ V TV+EFRKLYG  R   SR+ES D+D ++++  RQ S
Sbjct:    1 MFFLNPILFLLIIVVPFLIFRFLSRTSILHIANNWWRTLADKFYVYQLYRVPQFNDHMQENQLYRKVHTYLSSLPAVEDSDFTNLFSGAKPNEINLVLDPNQIVLDNFLGARLFWINQKCDGSGLKSLVLKIRKSDKRRILRPYLQHIHTVFEELEQR-KDVKLYINVEDEPQRNGRWRSVPFTHPATIDSVVMDSDLKNKVKSDLESFLKSKQYYNRLGRVWKRSYLLYGPSGTGKSTFIAAMAKFLSYDVYDVDLSKISGDSDLRSLLLQTTSKSLIVMEDLERHLTGKSTAVSLSGILNFMDGIVSCCGEERVMVFTMNGKDHVDPAILRPGRIDVHLEFPLCDFNAFKSLANSHLGVKEHKLFPQVEEMFQSGASLSPAEIGELMIANRASPSRALKSVISALQNNADTKLAGRVSRNGSVR-SAEESGDSGILCKDAGVSTVKEFRKLYGFLR--RSRRESADLDDKEREIGRQES 477
[Close]
BLAST of XM_017381888.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1BL55 ((ATP binding protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400047637}))

HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 310/475 (65.26%), Postives = 389/475 (81.89%), Query Frame = 0
 
Query:   11 VVIVGIYFLLRLVSKTSLLFIAKKWWRLLEDSCHVFQFYKIPKFNDHMQENQLYTKVVTYLNSLSSVEDSNYANLFTGNKSNDITIVLDSDQVVTDTFLSARVYWTNEKSK-TGSDTLVLKIRRRDKRRILRPYIQHIHTVFDEFEQRRKEVKLYINAETQPERNGRWISVPFTHPSTIETTVIDADLKNKVKSDLEAFLKSKQYYQRLGRVWKRSYLLCGPSGTGKSSFIAGMSKFLNYDIYDIDMRKVIDDSDLKMLLLRTTSKSMIVIEDLDRFLIEKSTAVTLSGILNFMDGFFSSCGEERVMVFTMNSKDRVDPAVLRPGRIDVHIQFPLCDFSAFKNLANSHLGLKEHKLFPQVEEIFQSGVSLSPAEIGEIMISNRSSPTRALKSVITAMQSNMAARVVNKIPR----SASARVGMEESGESAGLYSESVHTVREFRKLYGLFRSKSSRKE-SMDVDLQDKDYQRQSS 479
            + I+     L+++ KTSLL I KKWWR LED C+V+QFY++P+FN +MQENQLY KV TYLNSL  VEDS++ NL +G+KSN+I++VLDS+Q+V D FLSARV+W NEK++ TG  +LV+KIR++DKRRIL+PY+Q+IH+VFDE EQR+KEV+L++N + +P+RNGRW SVPFTHP+T +T V+D DLKNKVKSDLE+F KSKQYY RLG+VWKRSYLL GPSGTGKS+FIAG++  LNYD+YD+D+ KV DDSDLKMLLL+TTSK++IVIEDLD +L  KSTA +LSGILNFMDG FS CGEER+M+FT+N+KD++DP VLRPGRIDVHI FPLC+F++FK LANSHLGLK+HKLFPQVEEIFQ+G +LSPAEIGEIMISNRSSPTRALK+VI+A+Q N  +R   +  R    S S R   EE+GES     E+   +REF+KLYGL R +S RK+ S +    DKD  R  +
Sbjct:    6 IAIIASGLFLKILLKTSLLQIVKKWWRFLEDGCYVYQFYRVPQFNHNMQENQLYRKVCTYLNSLPCVEDSDFTNLISGDKSNEISLVLDSNQIVVDKFLSARVFWINEKNEFTGLKSLVMKIRKKDKRRILQPYLQYIHSVFDEIEQRKKEVRLFVNVDNEPQRNGRWRSVPFTHPATFDTVVMDTDLKNKVKSDLESFQKSKQYYHRLGKVWKRSYLLYGPSGTGKSTFIAGIANLLNYDVYDVDLSKVTDDSDLKMLLLQTTSKTLIVIEDLDSYLGTKSTAPSLSGILNFMDGIFSCCGEERIMIFTINNKDQIDPTVLRPGRIDVHIHFPLCNFNSFKTLANSHLGLKDHKLFPQVEEIFQTGAALSPAEIGEIMISNRSSPTRALKTVISALQINTESRAATRHARRLSESGSVRTA-EETGESGIFCREN---LREFKKLYGLLRVRSCRKDSSYEFGTSDKDNSRHDN 476
Match NameStatsDescription
A0A5B7B188E-Value: 0.000e+0, PID: 77.14AAA domain-containing protein {ECO:0000259|SMART:S... [more]
A0A5B7B3M4E-Value: 0.000e+0, PID: 72.54AAA domain-containing protein {ECO:0000259|SMART:S... [more]
A0A4S4D6B9E-Value: 0.000e+0, PID: 69.40AAA domain-containing protein {ECO:0000259|SMART:S... [more]
A0A2R6Q997E-Value: 0.000e+0, PID: 70.25(AAA-ATPase {ECO:0000313|EMBL:PSS04482.1})[more]
A0A2R6RSF8E-Value: 0.000e+0, PID: 70.39(AAA-ATPase {ECO:0000313|EMBL:PSS32972.1})[more]
A0A5B7B509E-Value: 0.000e+0, PID: 78.15AAA domain-containing protein {ECO:0000259|SMART:S... [more]
A0A5B7B1P7E-Value: 0.000e+0, PID: 74.43AAA domain-containing protein {ECO:0000259|SMART:S... [more]
A0A1J6KNR1E-Value: 0.000e+0, PID: 67.16(Aaa-atpase {ECO:0000313|EMBL:OIT26504.1})[more]
A0A6P6W788E-Value: 0.000e+0, PID: 65.07(AAA-ATPase At2g46620-like {ECO:0000313|RefSeq:XP_... [more]
M1BL55E-Value: 0.000e+0, PID: 65.26(ATP binding protein {ECO:0000313|EnsemblPlants:PG... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.