XM_017385999.1

Resource Type: 
Polypeptide
Name: 
XM_017385999.1
Identifier: 
XM_017385999.1-protein
Sequence: 
MSTSRLGSEENSGPESMIKEDLCMDIDPPFTENHATPEDWRRALAKVVPA
VVVLRTTACRAFDTEAAGASYATGFVVDKRNGIILTNRHVVKPGPVVAEA
MFVNREEVPVYPVYRDPVHDFGFFRYDPDAIQFLSYEDIPLAPEGACVGL
EIRVVGNDSGEKNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLA
KWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARR
FQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSV
HETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQ
TFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKK
FCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFGQSSVTPEMIQ
QMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDL
HIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQF
SNSGCFVQDQVSGKMIAKGPKVGRLFPLLPSPSLVSNYVSCNAVDCNNQV
WHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPF
PSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLR
YKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGII
SQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYL
INRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQ
SVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLP
SIAILPHFPESSAPSQRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSND
PPPVRRSSRNSKPPDRLWNMSVGNKQWKQNFKLLQKIILGTLFPCLQMLS
QLVASGFIV
Sequence Length: 
1009
Sequence Checksum: 
a7f3a4ac6fd195eb476d0ba38606ecb9
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017385999.1, derives from mRNA, XM_017385999.1.
Loading content
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I0ACR9 ((Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:PKA53352.1}) (3.1.13.- {ECO:0000313|EMBL:PKA53352.1}))

HSP 1 Score: 1133.24 bits (2930), Expect = 0.000e+0
Identity = 535/675 (79.26%), Postives = 584/675 (86.52%), Query Frame = 0
 
Query:  300 VHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFGQSSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPLLPSPSLVSNYVSCNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSPTMAPAT--------LSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            +HETSKRDQFLMKLRG+FE +RSNLMNR PVP +D C+GEL REEQRL+TQ  ++QK+QNS+PIPVAY AQG+ +GGRDM+N+QCYSCK FGH+ATNCTKKFCNYCKK GH IKDC IRPPKK ETAYNVSVG SNAP+  QSS+TPEM+QQMIV+A S LG+SGNKNS  KPWYFDS ASNHMT+T +PLNNVQKYKGDL I TADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGC VQDQVSGKMIAKGPKVGRLFPLL SPS +SNYV+CNAV C+NQVWH+RLGHPNSHVL +LLKSGLLGNK S SSN D   CASCKLGKSKTLPFP  K+ TTK FELVHTDVWGI+PV+SH+HYKYFVTFIDDF+R+TWVYFLR KSEVF  F+ F AL+ETQFSAKI+ILQSDSGGEY SNEFQ FLQ+HGIISQRSCP TPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPS  LNN+SPY  L+  AP+YS+LHIFGCVCF HL  HERNKLTAQSVKCAFLGY GTQ GFLCYDP+ RR RVSRNVIFFENQ FF TQ TS+ PS++ LPHFPES  P QRF PG+VY RRT P     T        L  A DP+LP SNDPPP+RRSSR  KPP+R
Sbjct:    1 MHETSKRDQFLMKLRGEFEAIRSNLMNREPVPLLDICVGELLREEQRLITQAVLEQKAQNSAPIPVAYAAQGRSKGGRDMTNVQCYSCKEFGHIATNCTKKFCNYCKKTGHIIKDCSIRPPKKPETAYNVSVGPSNAPSPSQSSITPEMVQQMIVSALSALGLSGNKNSNPKPWYFDSGASNHMTNTALPLNNVQKYKGDLQIHTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCLVQDQVSGKMIAKGPKVGRLFPLLLSPSSMSNYVACNAVQCDNQVWHRRLGHPNSHVLRVLLKSGLLGNKNSTSSNNDVADCASCKLGKSKTLPFPLHKTRTTKPFELVHTDVWGIAPVISHEHYKYFVTFIDDFTRFTWVYFLRSKSEVFSVFKVFLALVETQFSAKIKILQSDSGGEYMSNEFQFFLQSHGIISQRSCPFTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSANLNNDSPYFCLFGHAPNYSNLHIFGCVCFAHLPAHERNKLTAQSVKCAFLGYAGTQKGFLCYDPHARRTRVSRNVIFFENQPFFSTQQTSEFPSLSALPHFPESPTPVQRFTPGYVYRRRTPPASDALTSLTEVLPHLPTASDPILPISNDPPPLRRSSRPHKPPER 675    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A445KL17 ((Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:RZC11542.1}) (2.7.7.7 {ECO:0000313|EMBL:RZC11542.1}))

HSP 1 Score: 1015.76 bits (2625), Expect = 0.000e+0
Identity = 505/817 (61.81%), Postives = 610/817 (74.66%), Query Frame = 0
 
Query:  162 KNYSAWSFQFEILVKGKELWGYVDGTESAPDSK-EKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSS---NAPNFGQSSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL--LPSPSLVSNYVSCNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSPTMAPATLSDAP--DPVLPSS----NDPPPVRRSSRNSKPPDR 966
            KNYSAW+FQF+I + GK+LWG+VDG+   PD    K + AKW VKDAQ+M+WILGS++P+++LNLRPYK++  MW YLKKVY+Q+N ARRFQLE ++    Q S++I +FYS F NLW EYTDIVY  + +EGL +VQ+VHET+KRDQFLMKLR DFE +RSNLM+RNPVPS+D C   L REEQRL+TQ+ I       + +PVAYVA+GK +   DM  IQC+ CK FGH A+NC  KFCNYCKK GH IK+CPIRPPK++ TA+  SV SS    AP+    ++TPEM+QQMI++AFS LG SG  +S   PWYFDS ASNHMT+    L N++KY GDL I TADGN LPITA GDIS SL  VFVSP L++NLISVGQLVDN+C VQFS SGC VQDQ SGK+IAKGPKVGRLFP+      SL    VSCN+   + QVWHKRLGHPN++VL  LLKS  LGNK ++S N  +  C  CKLGKSK LPFP+ +S+ T+ FE++H+DVWG++PV+SH HYKYF+TFIDD+SR+TWVYFLR K EVF  F+ FHA ++TQFS+KI+I +SD+ GEY S+ FQ FLQ++GI+ QRSCPSTPQQNGVAERKNRHLLDVVRTLL+ES VPS F CEALSTAV+LINRL SP++ NESP+ RLY   P+YS+L IFGCVC+VHL P ER KLTAQSV+CAFLGY   Q GFLCYDP  RRIRVSRNVIF EN  FF +      P I++LP F  S A     KP   Y+RRT+      T    P  D  L +      +P P RRSSR  KPPDR
Sbjct:  899 KNYSAWAFQFQIFLTGKDLWGHVDGSSPIPDKDTAKVEHAKWTVKDAQVMAWILGSVDPNIVLNLRPYKTAATMWNYLKKVYSQNNEARRFQLEHDIATFKQDSLSISDFYSQFMNLWAEYTDIVYADLPSEGLNSVQTVHETTKRDQFLMKLRSDFEGIRSNLMHRNPVPSLDACFNALLREEQRLLTQSIIG--DHKYAIVPVAYVARGKPKS-HDMRTIQCFYCKQFGHYASNCPNKFCNYCKKDGHIIKECPIRPPKRNVTAFTASVDSSVQQQAPD-PAPTMTPEMVQQMIISAFSALGFSGKSSS---PWYFDSGASNHMTNNAQFLTNIKKYLGDLKIHTADGNPLPITATGDISPSLTNVFVSPGLTSNLISVGQLVDNDCQVQFSQSGCLVQDQHSGKIIAKGPKVGRLFPIQFSLPSSLSLPLVSCNSAIVDYQVWHKRLGHPNANVLHDLLKSNYLGNKHNSSLNAVHFDCIPCKLGKSKILPFPTHQSNVTQPFEIIHSDVWGVAPVISHAHYKYFITFIDDYSRFTWVYFLRSKDEVFSTFKFFHAFVQTQFSSKIKIFRSDNEGEYMSHSFQDFLQSNGIVFQRSCPSTPQQNGVAERKNRHLLDVVRTLLLESHVPSRFLCEALSTAVHLINRLSSPSIGNESPFNRLYGHPPNYSNLRIFGCVCYVHLPPRERTKLTAQSVECAFLGYSPHQKGFLCYDPTIRRIRVSRNVIFQENVYFFASHPDLTSPPISVLPLFSNSHAGEPSPKPLLTYNRRTTANQNQQTEPQGPLRDNSLAADPVEEPEPAPPRRSSRIIKPPDR 1708    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9ETU9 ((Uncharacterized protein {ECO:0000313|EMBL:SPC78252.1}))

HSP 1 Score: 950.273 bits (2455), Expect = 0.000e+0
Identity = 473/823 (57.47%), Postives = 595/823 (72.30%), Query Frame = 0
 
Query:  162 KNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFGQ-----------SSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNYVS--CNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPS----QRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            KNY+AW FQ E  +KGK LWG++DG+     S+  +     K    QIMSWILGSMEP +IL+LRP++S+K MW YLK+VY+Q N AR+F LEL +    QG +++Q++YS F  LWN+Y+D+V   VSAEGL ++Q V  TS+RDQFLMKLR +FE +R++L+NR+PVP+++ C GEL REEQRL TQ  ++Q    S+ + VAY A GK +G RDMS  QCYSCK +GH+A NC +KFCNYCK+ GH IK+C IRP  +S  AY+  V   + P                S+T EM+Q+MIV+AFS LG  G  +S    W  DS ASNHMT++   L+NV++Y G  HIQTA+G++LPI AVGD+S+ L  V VSP LS NL+SVGQLVD +  V F++ GC VQDQ+SG++IAKGPK GRLF L +P+P  +  ++S  CN    + +VWHKRLGHPNS +LS LLKSGLL NK   SS   +  CA+CKLGKSK LPFPS  S  T +FE++H+DVWGISP +SH  YKYFVTFIDD+S+YTWVYFLR+KSEVF  F+ F AL++TQFSA ++IL+SDSGGEY S+EFQSFL + GIISQRSCP TPQQNGVAERKNRHLLDVVRTLLIES VP  FW EAL+TA +LINRLPS  LN ESPY RLY   P Y++LH FGCVCF+HL P +RNKL+AQS++CAFLGY  TQ G++CYDP + R+RVSRNV+FFENQ FF    +S+ P +A LP F ++        +RF+PG VY RR SP + P+       P+LP    P P+RRSSR S PPDR
Sbjct:   14 KNYTAWEFQLETFLKGKALWGHIDGSSKGGSSEADKAAWAAKDN--QIMSWILGSMEPHLILSLRPHRSAKAMWDYLKQVYHQDNNARQFHLELAIANYIQGDLSVQDYYSGFLTLWNDYSDLVTAKVSAEGLASIQHVQRTSQRDQFLMKLRPEFESIRASLVNRDPVPTLEACFGELLREEQRLNTQNLMEQSRIASNTVSVAYAAHGKGKG-RDMSTTQCYSCKKYGHIAPNCPQKFCNYCKQPGHIIKECTIRP-SRSTKAYHAVVTDDSQPAANAVSSAVVLQPPAPSLTREMVQEMIVSAFSALGFQGTGSSP--SWILDSGASNHMTNSLHGLSNVREYCGSSHIQTANGSALPIVAVGDVSSFLKDVLVSPNLSVNLVSVGQLVDQDYGVNFTHDGCVVQDQMSGQVIAKGPKHGRLFSLQIPAPRNLPPFLSLLCNKSRVSPEVWHKRLGHPNSRILSYLLKSGLLNNKEHFSSAVFS-DCATCKLGKSKILPFPSEGSRATHSFEIIHSDVWGISPTISHAQYKYFVTFIDDYSKYTWVYFLRHKSEVFPMFKLFLALVQTQFSATVKILRSDSGGEYMSHEFQSFLHSKGIISQRSCPYTPQQNGVAERKNRHLLDVVRTLLIESSVPPKFWVEALTTATFLINRLPSQALNLESPYFRLYHHHPTYTNLHTFGCVCFMHLPPPDRNKLSAQSIRCAFLGYSVTQKGYVCYDPTSNRVRVSRNVLFFENQWFFPMSSSSESP-VAFLPSFDDTLHDPRPLIERFQPGMVYQRR-SPVLPPSA------PILP----PVPLRRSSRVSAPPDR 817    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9GSB4 ((Uncharacterized protein {ECO:0000313|EMBL:SPD02373.1}))

HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0
Identity = 473/823 (57.47%), Postives = 594/823 (72.17%), Query Frame = 0
 
Query:  162 KNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFGQ-----------SSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNYVS--CNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPS----QRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            KNY+AW FQ E  +KGK LWG++DG+     S+  +     K    QIMSWILGSMEP +IL+LRP++S+K MW YLK+VY+Q N ARRF LEL +    QG +++Q++YS F  LWN+Y+D+V   VSAEGL ++Q VH TS+RDQFLMKLR +FE +R++L+NR+PVP+++ C GEL REEQRL TQ  ++Q    S+ + VAY A GK +G RDMS  QCYSCK +GH+A NC +KFCNYCK+ GH IK+C IRP  +S  AY+  V   + P                S+T EM+Q+MIV+AFS LG  G  +S    W  DS ASNHMT++   L+NV++Y G  HIQTA+G++LPI AVGD+S  L  V VSP LS NL+SVGQLVD +  V F++ GC VQDQ+SG++IAKGPK GRLF L +P+P  +  ++S  CN    + +VWHKRLGHPNS +LS LLKSGLL NK   SS   +  CA+CKLGKSK LPFPS  S  T +FE++H+DVWGIS  +SH  YKYFVTFIDD+S+YTWVYFLR+KSEVF  F+ F AL++TQFSA ++IL+SDSGGEY S+EFQSFL + GIISQRSCP TPQQNGVAERKNRHLLDVV+TLLIES VP  FW EAL+TA +LINRLPS  LN ESPY RLY   P Y++LH FGCVCF+HL P +RNKL+AQS++CAFLGY  TQ G++CYDP + R+RVSRNV+FFENQ FF    +S+ P +A LP F ++        +RF+PG VY RR SP + P+       P+LP    P P+RRSSR S PPDR
Sbjct:   14 KNYTAWEFQLETFLKGKALWGHIDGSSKGGSSEADKAAWAAKDN--QIMSWILGSMEPHLILSLRPHRSAKAMWDYLKQVYHQDNNARRFHLELAIANYIQGDLSVQDYYSGFLTLWNDYSDLVTAKVSAEGLASIQHVHRTSQRDQFLMKLRPEFESIRASLVNRDPVPTLEACFGELLREEQRLNTQNLMEQSRIASNTVSVAYAAHGKGKG-RDMSTTQCYSCKKYGHIAPNCPQKFCNYCKQPGHIIKECTIRP-SRSTKAYHAVVTDDSQPAANAVSSAVVLQPPTPSLTREMVQEMIVSAFSALGFQGTGSSP--SWILDSGASNHMTNSLHGLSNVREYCGSSHIQTANGSALPIVAVGDVSFFLKDVLVSPNLSVNLVSVGQLVDQDYGVNFTHDGCVVQDQMSGQVIAKGPKHGRLFSLQIPAPRNLPPFLSLLCNKSRVSPEVWHKRLGHPNSRILSYLLKSGLLNNKEHFSSAVFS-DCATCKLGKSKILPFPSEGSRATHSFEIIHSDVWGISLTISHAQYKYFVTFIDDYSKYTWVYFLRHKSEVFPMFKLFLALVQTQFSATVKILRSDSGGEYMSHEFQSFLHSKGIISQRSCPYTPQQNGVAERKNRHLLDVVQTLLIESSVPPKFWVEALTTATFLINRLPSQALNLESPYFRLYHHHPTYTNLHTFGCVCFMHLPPPDRNKLSAQSIRCAFLGYSVTQKGYVCYDPTSNRVRVSRNVLFFENQWFFPMSSSSESP-VAFLPSFDDTLHDPRPLIERFQPGMVYQRR-SPVLPPSA------PILP----PVPLRRSSRVSAPPDR 817    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K3NBK9 ((Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:PNY00431.1}) (Fragment))

HSP 1 Score: 905.59 bits (2339), Expect = 0.000e+0
Identity = 443/815 (54.36%), Postives = 576/815 (70.67%), Query Frame = 0
 
Query:  152 IRVVGNDSGEKNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFGQSSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPLLPSPSLVSNYVSCNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            IR  G     KNY AWSFQFE+ VKG+ L G+++GT +AP   +   L KW+ +DAQ+++WIL S+EP MI NLR + ++K+MW +LK +Y  +N A+RFQLE+++    QG M+IQ++YS F N+W E+++I++  V    L  +Q ++E SKRDQFLMKLR +FE  R+ L+NR+PVP+++ C+GEL REEQRL+TQ  +         + VAY AQG    GRDM  +QC+SCK FGH A +C+KKFCNYCK+ GH I +CP RP ++   A++    ++N  +    ++TPE +QQ++++A STLGI+G       PW+ DS ASNHMT ++  L NV  YKG+ +IQ ADGN+LPI A+GDI+ S N+VFVSP L++NLISVGQLVDNNC V FS +GCFVQDQVSGK+IAKGPKVGRLFPL    S  S   +CN V       H +LGHPN  VLS L+KSGLLGNK  N ++  + +C+ CKL KSKTLPFP       K FE++H+DVWG+SPV+SH  YKYFVTFIDDFSR+TWVYFL  K+EVF+ F+ F A ++ QF   I+IL++DSGGEY S+ FQ +LQ  GI+SQRSCP TPQQNG+AERKNRHLLDV R+LL+ + VP  FW EAL+TAV+LINRLPS  L  +SPY RL+   PDY++LH FGCVCFVHL P ERNKL AQSV CAFLGY  T  GFLCYD  ++R+R+SRNV+FF+ Q++F     S   S+ ++  F   S+  +RFKPGHVY RRT PT++ +               P P+RRS R S PPDR
Sbjct:   12 IRFTG-----KNYPAWSFQFEMFVKGESLSGHLNGTSTAP--TDVAALDKWEKQDAQVITWILASVEPQMINNLRSFSTAKEMWDHLKTIYKLNNDAKRFQLEVDIAHYRQGPMSIQDYYSGFLNMWAEHSEILHADVPKTSLATLQKIYEVSKRDQFLMKLRPEFEVARAALLNRSPVPNLEVCVGELLREEQRLLTQNSMLHDQSTPDALTVAYSAQGT-ANGRDMRPVQCFSCKQFGHFARDCSKKFCNYCKQRGHIITECPTRPARRRTQAFH---ATTNNADTTSDALTPEKVQQIVLSALSTLGINGKSTGTSTPWFVDSGASNHMTGSSDHLQNVCAYKGNQNIQIADGNTLPIYAIGDINPSFNSVFVSPGLASNLISVGQLVDNNCNVNFSRTGCFVQDQVSGKVIAKGPKVGRLFPLQFHSSSFS--FACNDVPHPFMDLHNKLGHPNFVVLSHLIKSGLLGNK--NITHNSSFNCSVCKLAKSKTLPFPDHAHRAEKCFEIIHSDVWGVSPVLSHGKYKYFVTFIDDFSRFTWVYFLHSKAEVFEMFKKFLAYVDNQFHTTIKILRTDSGGEYISHNFQEYLQQKGILSQRSCPYTPQQNGIAERKNRHLLDVTRSLLLAASVPPQFWVEALTTAVFLINRLPSQVLGFDSPYFRLFLAHPDYTNLHPFGCVCFVHLPPPERNKLGAQSVMCAFLGYSTTHKGFLCYDHTSQRLRMSRNVVFFDQQNYFPCSKPSSTDSVTLVD-FSNDSSSVERFKPGHVYVRRT-PTLSLSVADPP------PEPAPAPLRRSERVSHPPDR 803    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IUF9 ((Uncharacterized protein {ECO:0000313|EMBL:SPD29027.1}))

HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 458/823 (55.65%), Postives = 574/823 (69.74%), Query Frame = 0
 
Query:  162 KNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFG-----------QSSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNYVS--CNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPS----QRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            KNY+AW FQ E  +KGK LWG++DG+     S+  +     K    QIMSWILGSMEP +IL+LRP++S+K MW YLK+VY+Q N ARRF LEL +    QG +++Q++YS F  LWN+Y+D+V   VSAEGL +VQ VH TS+RDQFLMKLR +FE +R++L+NR+PVP+++ C GEL REEQRL TQ  ++Q    S+ + VAY A GK + GRDMS  QCYSCK +GH+A NC +KFCNYCK+ GH IK+C IR P +S  AY+  V   + P                S+T EM+Q+MIV+AFS LG  G  +S    W  DS ASNHMT++   L+NV++Y G  HIQTA+                             +SVGQLVD +  V F++ GC VQDQ+SG++IAKGPK GRLF L +P+P  +  ++S  CN    + +VWHKRLGHPNS +LS LLKSGLL NK   SS   +  CA+CKLGKSK LPFPS  S  T +FE++H+DVWGISP +SH  YKYFVTFIDD+S+YTWVYFLR+KSEVF  F+ F AL++TQFSA ++IL+SDSGGEY S+EFQSFL + GIISQRSCP TPQQNGVAERKNRHLLDVVRTLLIES VP  FW EAL+TA +LINRLPS  LN ESPY RLY   P Y++LH FGCVCF+HL P +RNKL+AQS++CAFLGY  TQ G++CYDP + R+RVSRNV+FFENQ FF    +S+ P +A LP F ++        +RF+PG VY RR SP + P+       P+LP    P P+RRSSR S PPDR
Sbjct:   14 KNYTAWEFQLETFLKGKALWGHIDGSSKGGSSEADKAAWAAKDN--QIMSWILGSMEPHLILSLRPHRSAKAMWDYLKQVYHQDNNARRFHLELAIANYIQGDLSVQDYYSGFLTLWNDYSDLVTAKVSAEGLASVQHVHRTSQRDQFLMKLRPEFESIRASLVNRDPVPTLEACFGELLREEQRLNTQNLMEQSRIASNTVSVAYAAHGKGK-GRDMSTTQCYSCKKYGHIAPNCPQKFCNYCKQPGHIIKECTIR-PSRSTKAYHAVVTDDSQPAANAVSSAVVLQPPAPSLTREMVQEMIVSAFSALGFQGTGSSP--SWILDSGASNHMTNSLHGLSNVREYCGSSHIQTAN-----------------------------VSVGQLVDQDYGVNFTHDGCVVQDQMSGQVIAKGPKHGRLFSLQIPAPRNLPPFLSLLCNKSRVSPEVWHKRLGHPNSRILSYLLKSGLLNNKEHFSSAVFS-DCATCKLGKSKILPFPSEGSRATHSFEIIHSDVWGISPTISHAQYKYFVTFIDDYSKYTWVYFLRHKSEVFPMFKLFLALVQTQFSATVKILRSDSGGEYMSHEFQSFLHSKGIISQRSCPYTPQQNGVAERKNRHLLDVVRTLLIESSVPPKFWVEALTTATFLINRLPSQALNLESPYFRLYHHHPTYTNLHTFGCVCFMHLPPPDRNKLSAQSIRCAFLGYSVTQKGYVCYDPTSNRVRVSRNVLFFENQWFFPMSSSSESP-VAFLPSFDDTLHDPRPLIERFQPGMVYQRR-SPVLPPSA------PILP----PVPLRRSSRVSAPPDR 788    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438JYT1 ((Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:RVX14120.1}))

HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 442/801 (55.18%), Postives = 556/801 (69.41%), Query Frame = 0
 
Query:  163 NYSAWSFQFEILVKGKELWGYVDGTE-SAPDSKEKEKLA----KWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDM--SNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSV-----GSSNAPNFGQSS--------VTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNYVSCNAVDCNN-----QVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFF-------CTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSP 930
            NYS W+FQFE+ +KGK+LWG++DGT+   P + +K +       W V DA+IMSW+LG +EP ++ +LRP++ ++ MW YLKKVY+Q N ARRFQLE  +     GS++IQ++YS+F  LW+EY D+V   V    L  +Q++H T++RDQFLMKLR ++E VRS+L+NR+PVPS+D C GEL REEQRL TQ  ++Q   +S    VAY AQG+   G  M   N+QC+ CK +GH+A  C KKFC+YCKK GH IK+C IRP  +   A+  SV      + ++P+   S          TPEM+Q+++++A ST+G  GN ++  K WY DS ASNHMT+    L +V+ Y G   IQTA+G+SLPI A+GD S+    VF++P+LSTNLISVGQLVDNNC V FS +GC VQDQV+GK IAKGPKVGRLFPL LP P   S   S  +  CNN      VWH+RLGHPN+ +LS +L S L GNK   S +   + C SCKLGKSKTLPFP   S  +  F+L+H+DVWG+SPV SH+ +KY+VTFIDD SR+TWVYFLR KSEVF+ F  F A ++ QFS  I+ L++DSGGEY S EFQ+FL + GII QRSCPSTPQQNGVAERKNRHLLDVVR LL+ES VPS FW EAL TA +LINRLPS  L+ ESPY RL+   P Y  L IFGCVCFVHL PHER+KL+AQSV+CAFLGY   Q GF+CYDP   R R+SRNVIFFENQ FF        +  T  LPS      F +    S RF+PG VY RR+ P
Sbjct:   14 NYSTWAFQFELFLKGKDLWGHIDGTDVEKPSTFDKSQDVGTSHSWAVLDARIMSWLLGLVEPHIVTHLRPHRFAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQDYYSAFLTLWHEYADLVTADVPITALSTIQTIHATTRRDQFLMKLRPEYESVRSSLLNRSPVPSLDICFGELLREEQRLSTQAILEQSHGSSGTTTVAYAAQGR---GPPMHSKNLQCFCCKEYGHIAAICPKKFCSYCKKKGHIIKECRIRPQNRQAQAFQTSVIVPPVATHDSPSAACSVPAPPAPDYCTPEMVQRILISALSTMGFQGNNST--KLWYVDSGASNHMTNNPTALCHVRPYAGQSSIQTANGSSLPIAAIGDASSKFTDVFLAPQLSTNLISVGQLVDNNCAVNFSGNGCVVQDQVTGKPIAKGPKVGRLFPLFLPVPDF-SPRSSIKSFACNNVSDLSMVWHRRLGHPNTQILSHVLNSDLPGNKDRYSLS---LECDSCKLGKSKTLPFPLHASRASHCFDLIHSDVWGLSPVSSHEKFKYYVTFIDDHSRFTWVYFLRSKSEVFRTFTEFLAYVDNQFSTSIKTLRTDSGGEYLSTEFQAFLASKGIIHQRSCPSTPQQNGVAERKNRHLLDVVRILLLESSVPSMFWVEALKTATHLINRLPSQVLHMESPYFRLFAKQPSYDHLRIFGCVCFVHLPPHERHKLSAQSVRCAFLGYNMCQKGFVCYDPTLHRTRISRNVIFFENQHFFPVSSSTVSSSSTVVLPSFE--QQFSDLHPVSSRFQPGIVYTRRSRP 803    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BNN7 ((Uncharacterized protein {ECO:0000313|EMBL:CAN74794.1}))

HSP 1 Score: 883.634 bits (2282), Expect = 0.000e+0
Identity = 443/800 (55.38%), Postives = 554/800 (69.25%), Query Frame = 0
 
Query:  163 NYSAWSFQFEILVKGKELWGYVDGTE-SAPDSKEKEKLA----KWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDM--SNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSV-----GSSNAPNFGQSS--------VTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LP----SPSLVSNYVSCNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFF-------CTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSP 930
            NYS W+FQFE+ +KGK+LWG++DGT+   P + EK +       W V DA+IMSW+LGS+EP ++ +LRP++S++ MW YLKKVY+Q N ARRFQLE  +     GS++IQ++YS+F  LW+EY D+V   V    L  +Q +H T++RDQFLMKLR ++E VRS+L+NR+PVPS+D C GEL REEQRL TQ  ++Q   +S    VAY AQG+   G  M   N+QC+ CK +GH+A  C KKFC+YCKK GH IK+C IRP  +   A+  SV      + ++P+   S          TPEM+Q+++++A S +G  GN ++  K WY DS ASNHMT+    L +V+ Y G   IQTA+G+SLPI A+GD S+    VF++P+LSTNLISVGQLVDNNC V FS +GC VQDQV+GK IAKGPKVGRLFPL LP    SP       +CN V   + VWH+RLGHPN+ +LS +L S L GNK   S +   + C SCKLGKSKTLPFP   S  +  F+L+H+DVWG SPV SH+ +KY+VTFIDD SR+TWVYFLR KSEVF  F  F A ++ QFS  I+ L++DSGGEY S EFQ+FL + GII QRSCPSTPQQNGVAERKNRHLLDVVRTLL+ES VPS FW EAL TA +LINRLPS  L+ ESPY RL+   P Y  L IFGCVCFVHL PHER+KL+AQSV+CAFLGY   Q GF+CYDP   R R+SRNVIFFENQ FF        +  T  LPS      F +    S  F+PG VY RR+ P
Sbjct:   14 NYSTWAFQFELFLKGKDLWGHIDGTDVEKPSTFEKSQDVGFSPSWAVLDARIMSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQDYYSAFLTLWHEYADLVTADVPIAALSTIQXIHATTRRDQFLMKLRPEYESVRSSLLNRSPVPSLDICFGELLREEQRLSTQAILEQSHGSSGTTTVAYAAQGR---GPPMHSKNLQCFCCKEYGHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQAQAFQTSVIVPPVATHDSPSAACSVPAPPAPDYCTPEMVQRILISALSAMGFQGNNST--KLWYVDSGASNHMTNNPTALCHVRPYAGQSSIQTANGSSLPIAAIGDASSKFTDVFLAPQLSTNLISVGQLVDNNCAVNFSGNGCVVQDQVTGKPIAKGPKVGRLFPLFLPIPDFSPRSSIKSFACNNVSDLSMVWHRRLGHPNTQILSHVLNSDLPGNKDRYSLS---LECDSCKLGKSKTLPFPLHASRASHCFDLIHSDVWGPSPVSSHEKFKYYVTFIDDHSRFTWVYFLRSKSEVFXTFTEFLAYVDNQFSTSIKTLRTDSGGEYLSTEFQAFLASKGIIHQRSCPSTPQQNGVAERKNRHLLDVVRTLLLESSVPSMFWVEALKTATHLINRLPSQVLHMESPYFRLFAKQPSYDHLRIFGCVCFVHLPPHERHKLSAQSVRCAFLGYNMCQKGFVCYDPTLHRTRISRNVIFFENQHFFPVSSSTVSSSSTVVLPSFE--QQFSDLHPVSSCFQPGIVYTRRSRP 803    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438F4G5 ((Retrovirus-related Pol polyprotein from transposon TNT 1-94 {ECO:0000313|EMBL:RVW54910.1}))

HSP 1 Score: 875.93 bits (2262), Expect = 0.000e+0
Identity = 438/803 (54.55%), Postives = 551/803 (68.62%), Query Frame = 0
 
Query:  163 NYSAWSFQFEILVKGKELWGYVDGTE-SAPDSKEKEKLA----KWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDM--SNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSV--------GSSNAPNFGQSS--------VTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNY----VSCNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFF-------CTQMTSQLPSIAILPHFPESSAPSQRFKPGHVYHRRTSP 930
            NYS W+FQFE+ +KGK+LWG++DGT+   P + EK +       W V DA+IMSW+LGS+EP ++ +LRP++S++ MW YLKKVY+Q N ARRFQLE  +     GS++IQ++YS+F  LW+EY D+V   V    L  +Q++H T++RDQFLMKLR ++E VRS+L+NR+ VPS+D C GEL REEQRL TQ  ++Q   +S    VAY  QG+   G  M   N+QC+ CK +GH+A  C KKFC+YCKK GH IK+C IRP  +   A+  SV         + ++P+   S          TPEM+QQM+++A S +G  GN ++  K WY DS ASNHMT+    L +V+ Y G   IQTA+G+SLPI  +GD S+    VF++P+LSTNLISVGQLVDNNC V FS +GC VQDQV+GK IAKGPKVGRLFPL LP P     Y     +CN V   + VWH+RLGHPN+ +LS +L S L GNK   S +   + C SCKLGKSKTLPFP   S  +  F+L+H+DVWG SP+ S++ +KY+VTFIDD SR+TWVYFLR KSEVF+ F  F A I+ QFS  I+ L++DSGGEY S EFQ+FL + GII QRSCPSTPQQNGV +RKNRHLLDVVRTLL+ES VPS FW EAL TA +LINRLPS  L+ ESPY RL+   P Y  L IFGCVCFV L PHER+KL+AQSV+CAFLGY   Q GF+CYDP   R R+SRNVIFFENQ FF        +  T  LPS      F +    S RF+P  VY RR+ P
Sbjct:   14 NYSTWAFQFELFLKGKDLWGHIDGTDVEKPSTFEKSQDVGFSPSWVVLDARIMSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNNARRFQLEHAIAMFQHGSLSIQDYYSAFLTLWHEYADLVTADVPIAALSTIQTIHATTRRDQFLMKLRPEYESVRSSLLNRSHVPSLDICFGELLREEQRLSTQAILEQSHGSSGTATVAYATQGR---GPPMHSKNLQCFCCKEYGHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQAQAFQTSVIVPPIATSATHDSPSTTCSVPAPPAPDYCTPEMVQQMLISALSAMGFQGNNST--KLWYVDSGASNHMTNNPTALCHVRPYTGQSSIQTANGSSLPIATIGDASSKFTDVFLAPQLSTNLISVGQLVDNNCAVNFSGNGCVVQDQVTGKPIAKGPKVGRLFPLFLPVPDFSPLYSIKSFACNNVSDLSMVWHRRLGHPNTQILSHVLNSDLPGNKDRYSLS---LECDSCKLGKSKTLPFPLHASRASHCFDLIHSDVWGPSPISSYEKFKYYVTFIDDHSRFTWVYFLRSKSEVFRTFTEFLAYIDNQFSTSIKTLRTDSGGEYLSTEFQAFLASKGIIHQRSCPSTPQQNGVVKRKNRHLLDVVRTLLLESSVPSMFWVEALKTATHLINRLPSQVLHMESPYFRLFAKQPSYDHLRIFGCVCFVRLPPHERHKLSAQSVRCAFLGYNMCQKGFVCYDPTLHRTRISRNVIFFENQHFFPVSSSTASSSSTVVLPSFE--QQFSDLHPVSSRFQPSIVYTRRSRP 806    
BLAST of XM_017385999.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9GB15 ((Uncharacterized protein {ECO:0000313|EMBL:SPC96660.1}))

HSP 1 Score: 863.603 bits (2230), Expect = 0.000e+0
Identity = 448/839 (53.40%), Postives = 562/839 (66.98%), Query Frame = 0
 
Query:  153 RVVGNDSGE-------KNYSAWSFQFEILVKGKELWGYVDGTESAPDSKEKEKLAKWKVKDAQIMSWILGSMEPSMILNLRPYKSSKDMWGYLKKVYNQSNAARRFQLELELGQLSQGSMTIQEFYSSFENLWNEYTDIVYESVSAEGLVAVQSVHETSKRDQFLMKLRGDFEPVRSNLMNRNPVPSIDTCIGELFREEQRLMTQTFIDQKSQNSSPIPVAYVAQGKHRGGRDMSNIQCYSCKGFGHVATNCTKKFCNYCKKAGHTIKDCPIRPPKKSETAYNVSVGSSNAPNFG-----------QSSVTPEMIQQMIVNAFSTLGISGNKNSAHKPWYFDSAASNHMTSTTVPLNNVQKYKGDLHIQTADGNSLPITAVGDISTSLNTVFVSPKLSTNLISVGQLVDNNCTVQFSNSGCFVQDQVSGKMIAKGPKVGRLFPL-LPSPSLVSNYVS--CNAVDCNNQVWHKRLGHPNSHVLSILLKSGLLGNKVSNSSNTDNIHCASCKLGKSKTLPFPSRKSHTTKAFELVHTDVWGISPVVSHQHYKYFVTFIDDFSRYTWVYFLRYKSEVFKAFQTFHALIETQFSAKIRILQSDSGGEYTSNEFQSFLQNHGIISQRSCPSTPQQNGVAERKNRHLLDVVRTLLIESCVPSHFWCEALSTAVYLINRLPSPTLNNESPYLRLYEDAPDYSDLHIFGCVCFVHLQPHERNKLTAQSVKCAFLGYGGTQNGFLCYDPNTRRIRVSRNVIFFENQSFFCTQMTSQLPSIAILPHFPESSAPS----QRFKPGHVYHRRTSPTMAPATLSDAPDPVLPSSNDPPPVRRSSRNSKPPDR 966
            RV GN +         KNY+AW FQ E  +KGK LWG++DG+     S+  +     K    QIMS                   +K MW YLK+VY+Q N ARRF LEL +   +QG +++Q++YS F  LWN+Y+D+V   VSAEGL +VQ VH TS+RDQFLMKLR +FE +R++L+NR+PVP+++ C GEL REEQRL TQ  ++Q    S+ + VAY A GK + GRDMS  QCYSCK +GH+A NC +KFCNYCK+ GH IK+C IR P +S  AY+  V   + P                S+T EM+Q+MIV+AFS LG  G  +S    W  DS ASNHMT++   L+NV++Y G  HIQTA+                             +SVGQLVD +  V F++ GC VQDQ+SG++IAKGPK GRLF L +P+P  +  ++S  CN    + +VWHKRLGHPNS +LS LLKSGLL NK   SS   +  CA+CKLGKSK LPFPS  S  T +FE++H+DVWGISP +SH  YKYFVTFIDD+S+YTWVYFLR+KSEVF  F+ F AL++TQFSA ++IL+SDSGGEY S+EFQSFL + GIISQRSCP TPQQNGVAERKNRHLLDVVRTLLIES VP  FW EAL+TA +LINRLPS  LN ESPY RLY   P Y++LH FGCVCF+HL P +RNKL+AQS++CAFLGY  TQ G++CYDP + R+RVSRNV+FFENQ FF    +S+ P +A LP F ++        +RF+PG VY RR SP + P+       P+LP    P P+RRSSR S PPDR
Sbjct:  271 RVYGNQADNVCVRFTGKNYTAWEFQLETFLKGKALWGHIDGSSKGGSSEADKAAWAAKDN--QIMS-------------------AKAMWDYLKQVYHQDNNARRFHLELAIANYTQGDLSVQDYYSGFLTLWNDYSDLVTAKVSAEGLASVQHVHRTSQRDQFLMKLRPEFESIRASLVNRDPVPTLEACFGELLREEQRLNTQNLMEQSRIASNTVSVAYAAHGKGK-GRDMSTTQCYSCKKYGHIAPNCPQKFCNYCKQPGHIIKECTIR-PSRSTKAYHAVVTDDSQPAANAVSSAVVLQPPAPSLTREMVQEMIVSAFSALGFQGTGSSP--SWILDSGASNHMTNSLHGLSNVREYCGSSHIQTAN-----------------------------VSVGQLVDQDYGVNFTHDGCVVQDQMSGQVIAKGPKHGRLFSLQIPAPRNLPPFLSLLCNKSRVSPEVWHKRLGHPNSRILSYLLKSGLLNNKEHFSSAVFS-DCATCKLGKSKILPFPSEGSRATHSFEIIHSDVWGISPTISHAQYKYFVTFIDDYSKYTWVYFLRHKSEVFPMFKLFLALVQTQFSATVKILRSDSGGEYMSHEFQSFLHSKGIISQRSCPYTPQQNGVAERKNRHLLDVVRTLLIESSVPPKFWVEALTTATFLINRLPSQALNLESPYFRLYHHHPTYTNLHTFGCVCFMHLPPPDRNKLSAQSIRCAFLGYSVTQKGYVCYDPTSNRVRVSRNVLFFENQWFFPMSSSSESP-VAFLPSFDDTLHDPRPLIERFQPGMVYQRR-SPVLPPSA------PILP----PVPLRRSSRVSAPPDR 1042    
Match NameStatsDescription
A0A2I0ACR9E-Value: 0.000e+0, PID: 79.26(Retrovirus-related Pol polyprotein from transposo... [more]
A0A445KL17E-Value: 0.000e+0, PID: 61.81(Retrovirus-related Pol polyprotein from transposo... [more]
A0A2N9ETU9E-Value: 0.000e+0, PID: 57.47(Uncharacterized protein {ECO:0000313|EMBL:SPC7825... [more]
A0A2N9GSB4E-Value: 0.000e+0, PID: 57.47(Uncharacterized protein {ECO:0000313|EMBL:SPD0237... [more]
A0A2K3NBK9E-Value: 0.000e+0, PID: 54.36(Retrovirus-related Pol polyprotein from transposo... [more]
A0A2N9IUF9E-Value: 0.000e+0, PID: 55.65(Uncharacterized protein {ECO:0000313|EMBL:SPD2902... [more]
A0A438JYT1E-Value: 0.000e+0, PID: 55.18(Retrovirus-related Pol polyprotein from transposo... [more]
A5BNN7E-Value: 0.000e+0, PID: 55.38(Uncharacterized protein {ECO:0000313|EMBL:CAN7479... [more]
A0A438F4G5E-Value: 0.000e+0, PID: 54.55(Retrovirus-related Pol polyprotein from transposo... [more]
A0A2N9GB15E-Value: 0.000e+0, PID: 53.40(Uncharacterized protein {ECO:0000313|EMBL:SPC9666... [more]
back to top
Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.

This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.
Loading content