Resource Type:
Polypeptide
Name:
XM_017393778.1
Identifier:
XM_017393778.1-protein
Sequence:
MALHGLFSPFLVTAPSRMAIPSSNAPKLCASKPVQCITTPVTTTDHDQGS
ASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETD
VPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICEADSQLGNDLHSTALLF
RILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGE
DIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWY
IHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPF
ARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEE
LKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNII
PYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAY
FLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKA
VQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPN
IARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLNE
Sequence Length:
588
Sequence Checksum:
bc218e51575a228b3c3bbf2132b20c82
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017393778.1, derives from mRNA, XM_017393778.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5BX73 ((Terpene synthase {ECO:0000313|EMBL:AUG98171.1}))
HSP 1 Score: 1045.03 bits (2701), Expect = 0.000e+0
Identity = 501/590 (84.92%), Postives = 535/590 (90.68%), Query Frame = 0
Match: A0A2H5BX73 ((Terpene synthase {ECO:0000313|EMBL:AUG98171.1}))
HSP 1 Score: 1045.03 bits (2701), Expect = 0.000e+0
Identity = 501/590 (84.92%), Postives = 535/590 (90.68%), Query Frame = 0
Query: 1 MALHGLFSPFLVTAPSRMAIPSSN-APKLCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICEAD-SQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLNE 588
M L G S F+VT R +P + A K+C SKPVQCIT PVT T D SASRRNA Y PSFWDYNVVKSLSSNYD KKY QV+ELK+DVKRLIHAET VPLAKLELLDSV RLGLNYQFQKDIKQAID IC AD S LG DLHSTAL FRILREHGY VSQDVFQ+FTDETG FK NL EDVKGL SLYEAS++GFQGEDI+D+AKAF+ EHLK +QG LSP MARKV+HALDMPLHWKLPRVEA+WYI TYE+EQN+IP+LLKLAKLDYNIVQSVHQKEVSKLASWWVDIGL +PFARDRLVEHYFWANGIV PEY FRDM TK+ICLITTVDDVYDVYG+LEELKLFTDYVDRWDITEIDKLP+HIKTVLLA+FNTVNEIGYWTMRERDFNIIPYL KQWANLCKAYLREATWYHSGYKPT+EEYMENASVSIGGLLMLF AYFLT++KITVEALDFIDKVPS+MWCPS+L+RLTNDLGTSSHELARGD LKAVQCYMNDTG+SEE+SRKHVD+LVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHG+PQHWTKDHLKSLLVEPFTL+E
Sbjct: 1 MTLQGPLSTFVVTTHPRKPLPLAKIASKVCVSKPVQCITAPVTETHQDDSSASRRNAKYAPSFWDYNVVKSLSSNYDGKKYTSQVDELKDDVKRLIHAETYVPLAKLELLDSVQRLGLNYQFQKDIKQAIDAICSADDSWLGGDLHSTALWFRILREHGYAVSQDVFQRFTDETGNFKDNLREDVKGLLSLYEASYFGFQGEDIIDKAKAFSLEHLKTSVQGELSPNMARKVNHALDMPLHWKLPRVEAIWYIETYEREQNRIPSLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLDKIPFARDRLVEHYFWANGIVPEPEYRPFRDMGTKIICLITTVDDVYDVYGTLEELKLFTDYVDRWDITEIDKLPVHIKTVLLALFNTVNEIGYWTMRERDFNIIPYLTKQWANLCKAYLREATWYHSGYKPTMEEYMENASVSIGGLLMLFSAYFLTSEKITVEALDFIDKVPSVMWCPSILVRLTNDLGTSSHELARGDNLKAVQCYMNDTGASEEMSRKHVDNLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGMPQHWTKDHLKSLLVEPFTLSE 590
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D3ML99 ((Limonene synthase {ECO:0000313|EMBL:AIO10970.1}) (4.2.3.16 {ECO:0000313|EMBL:AIO10970.1}))
HSP 1 Score: 844.343 bits (2180), Expect = 0.000e+0
Identity = 400/586 (68.26%), Postives = 487/586 (83.11%), Query Frame = 0
Match: A0A0D3ML99 ((Limonene synthase {ECO:0000313|EMBL:AIO10970.1}) (4.2.3.16 {ECO:0000313|EMBL:AIO10970.1}))
HSP 1 Score: 844.343 bits (2180), Expect = 0.000e+0
Identity = 400/586 (68.26%), Postives = 487/586 (83.11%), Query Frame = 0
Query: 6 LFSPFLVTAPSRMA--IPSSNAPKLCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRIC--EADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLN 587
FSP L +P+R + N P++ SK +QC T TT DHDQ +RR+ANY PSFWDYN VKSL+S+Y E+KY QVE+LK++V+ LI+ + DVPL LEL+DSV RLGL Y+F+KDIK+A+D I + D+ L +DL+STAL FR+LR+HGY V QDVF++F +E G FKA++ EDVKGL SLYEASF+GF+GEDI+D+AKAFA++HLK + +GNLSP M RKV+HALDMPLHWKLPR+EA W+I TYEQE NK PNLL+LAKLDYNIVQS+HQKEV +LA WWVD+GL + F+RDRL+EHYFW NG+VS P+Y AFRDM TKV C IT +DDVYDVYGS+EEL+LFTD+VDRWDITEIDKLP +IK VLLAMFN N+IGYWT++ER FNIIPYL KQWA LCKAY EA W+H GYKPT++EY++NA VSI +MLFC+YFLT DKITV+AL++IDK+PSIMWCPS+L+RLTNDLGTSS ELARGD LKAVQCYMNDTG++EEV+R+H+ LVHETWK LNKD+LGSYPFSE L+ANPN+ RT+Q YQ+GDGHGIP WTKD++ SLLVEPFTL+
Sbjct: 2 FFSP-LTVSPARCVSLLSPKNHPRIRNSKSIQCNAT-ATTIDHDQ-ELNRRSANYPPSFWDYNFVKSLTSDYTEEKYVSQVEKLKDEVQHLINGDMDVPLLMLELIDSVQRLGLKYKFEKDIKKALDVIYNDKNDAWLSSDLYSTALQFRLLRQHGYDVPQDVFERFKNENGSFKASICEDVKGLLSLYEASFFGFKGEDIIDEAKAFATKHLKKI-KGNLSPSMVRKVNHALDMPLHWKLPRMEARWFIDTYEQEPNKNPNLLQLAKLDYNIVQSIHQKEVGELARWWVDLGLDKVTFSRDRLMEHYFWCNGMVSDPQYGAFRDMTTKVTCFITLIDDVYDVYGSIEELELFTDFVDRWDITEIDKLPNNIKAVLLAMFNGTNDIGYWTLKERGFNIIPYLSKQWAKLCKAYFTEAKWFHQGYKPTLDEYLDNAVVSIAAPIMLFCSYFLTTDKITVDALNYIDKLPSIMWCPSMLLRLTNDLGTSSGELARGDSLKAVQCYMNDTGATEEVAREHIKSLVHETWKTLNKDMLGSYPFSEACLTANPNLGRTTQCMYQHGDGHGIPDRWTKDNVISLLVEPFTLD 583
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A222EMT2 ((Monoterpene synthase {ECO:0000313|EMBL:ASP27474.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 368/587 (62.69%), Postives = 461/587 (78.53%), Query Frame = 0
Match: A0A222EMT2 ((Monoterpene synthase {ECO:0000313|EMBL:ASP27474.1}))
HSP 1 Score: 776.933 bits (2005), Expect = 0.000e+0
Identity = 368/587 (62.69%), Postives = 461/587 (78.53%), Query Frame = 0
Query: 1 MALHGLFSPFLVTAPSRMAIPSSNAPK-LCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICEADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTL 586
MAL +FSPFLV+ ++ S P +C SK ++C + +T DH + +RR+ANY PSFWDYN V+SLSS+Y E+KY + +K++VK LI+ PLAKLEL+D+V RLGL Y F+ +IKQ++D + D+ +DLH+TAL FR+LR+HGY V +DVF+ F DETG FK +L EDVKGL SLYEASF+G GE I+D+AK F + +LKN+ +G++SP + RKV HALDMPLHW+L RVEA W+I TYEQEQN P LL+ AKLDYN+VQSVHQKEV LA WWVD+GL + FARDRLVEHY W +G+V P++ AFRDM TK+I LITT+DD+YDVYG+L E++LFTD+VDRWD+ IDKLP +I+T LLA+FNTVNEIGYWT++ R FNIIPYL K WA++ KA L+EA WYHSGYKPT+ EY++NA VSIG L LF +YFLT + I EAL +IDK+PSIM C S+L+RLTNDLGTSS ELARGD LKAVQCYMN+TG+SEEV+R ++++LVHETWK +NK + SYPFSEPFLSANPN+ RT+Q FYQYGDGHGIP +WTKDHL SLLV+P L
Sbjct: 1 MALRAVFSPFLVSPILLASLQSPKTPTTICPSKSIRCASNTITIDDH---TVTRRSANYPPSFWDYNFVQSLSSDYTEEKYMREAYNMKDEVKGLINGVM-YPLAKLELIDAVQRLGLKYHFEGEIKQSLDDLIHNDAWFSDDLHATALRFRLLRQHGYDVPKDVFESFKDETGNFKTSLFEDVKGLLSLYEASFFGLDGETIIDEAKIFTTANLKNI-KGDMSPSVVRKVGHALDMPLHWRLTRVEARWFIETYEQEQNMSPILLEFAKLDYNMVQSVHQKEVGNLARWWVDMGLDKMSFARDRLVEHYLWCSGMVFEPKFGAFRDMGTKIISLITTIDDIYDVYGALHEIELFTDFVDRWDVNGIDKLPHNIRTCLLALFNTVNEIGYWTLKNRGFNIIPYLSKAWADVLKACLKEAKWYHSGYKPTLGEYLDNAVVSIGAPLALFTSYFLTTENINEEALHYIDKLPSIMRCSSMLLRLTNDLGTSSDELARGDNLKAVQCYMNETGASEEVARDYINNLVHETWKTMNKGMFESYPFSEPFLSANPNLGRTAQCFYQYGDGHGIPHNWTKDHLISLLVQPIPL 582
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BQX1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545016.1}))
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 358/564 (63.48%), Postives = 450/564 (79.79%), Query Frame = 0
Match: A0A5J5BQX1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8545016.1}))
HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 358/564 (63.48%), Postives = 450/564 (79.79%), Query Frame = 0
Query: 26 PKLCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICE--ADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLN 587
P K VQC+ P+T +D + +RR+ANY+PS WDY+ V+SL +Y E+KY Q +++K++VK +I+ D PLAKLEL+D+V RLGL YQF+ +IK ID I + +D+ L +DL++TAL FR+LR+HGY V Q+VF +F DET FK L EDVKG+ SLY+ASF+G +GE I+D AK F + +LKN+ +G++SP +ARKV HALDMPLHW+L RVEA W+I TYEQEQ+ P LL+LAKLDYNIVQSVH+KEVSKLA WWVD+GL + FARDRLVEHYFW +G+V P++ +FRDM TKVI LITT+DD+YDVYGSLEEL+LFTD+VDRWDI IDKLP +I+T LLAM+NT NEIGYWT++ER FNIIPYL K WA+LCKAY +EA WYH G+KPT+EEY++NA VSI LMLFC+Y LT +KIT E L +IDK+PSIM C S+L+RLTNDLGTSS ELARGD LKAVQCYMN+TG+SEE + ++++ LVH+ WK +NK++ YPFSEPFLSANPN+ RT+Q FYQYGDGHG+P WTKDHL SLL +P LN
Sbjct: 12 PTSGTFKTVQCVANPLTISD---PTVARRSANYMPSVWDYDFVQSLGCDYTEEKYMRQADKMKDEVKCMINESMD-PLAKLELIDAVQRLGLKYQFETEIKNGIDFIYKDSSDAWLHDDLYATALRFRLLRQHGYNVPQEVFARFMDETSNFKTQLYEDVKGILSLYDASFFGLEGETIIDDAKTFTTTNLKNI-KGDISPSLARKVGHALDMPLHWRLTRVEARWFIDTYEQEQDMNPTLLELAKLDYNIVQSVHRKEVSKLARWWVDMGLDRMSFARDRLVEHYFWCSGMVFEPQFGSFRDMGTKVISLITTIDDIYDVYGSLEELELFTDFVDRWDINGIDKLPRNIRTCLLAMYNTGNEIGYWTLKERGFNIIPYLSKAWADLCKAYFKEARWYHGGHKPTLEEYLDNAVVSIAAPLMLFCSYSLTTEKITEETLHYIDKLPSIMRCSSILLRLTNDLGTSSDELARGDNLKAVQCYMNETGASEEAACEYINSLVHKIWKTMNKEMFECYPFSEPFLSANPNLGRTAQCFYQYGDGHGVPDRWTKDHLMSLLFQPIPLN 570
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A5E9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524547.1}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 354/581 (60.93%), Postives = 450/581 (77.45%), Query Frame = 0
Match: A0A5J5A5E9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524547.1}))
HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 354/581 (60.93%), Postives = 450/581 (77.45%), Query Frame = 0
Query: 1 MALHGLFSPFLVTAPSRMAI-PSSNAPKLCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICE--ADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKS 578
+ L LFSP LV++ ++ P K V+C+T P+T+ D +A+RR+ANY PS WDY+ V+SL +Y E+KY +E+K++VKRLI+ TD PLAKLEL+D+V RLGL YQF+ +IK +D + + +D+ L +DL++TAL FR+LR+HG Q+VF +F DETG F+ L EDVKGL SLYEASF+G +GE I+D+AKAF + +LKN+ +G +SP +ARKV HALDMPLHW+L RVEA W+I TYEQEQ+ P LL+LAKLDYNIVQSVH+KEVSKLA WWVD+GL + FARDRLVE+YFW+ G+ P++ +FR+M TKV LITTVDD+YDVYG+LEEL+LFTD VDRWDI IDKLP +IKT LL M+NT NEIGYWT++E+ FNIIPYL K WA+LCKAY +EA WYH G+KPT+EEY+ENA VS+ L+L YFLTA++IT EAL +IDK PSIM C S L+RL NDLGTSS ELARGD LK++QCYMN+TG+SEE +R+++ LVH+TWK +NK++ YPFSEPFLSA PN+ RT+Q YQYGDGHG+P WTKDHL S
Sbjct: 3 LRLQPLFSPLLVSSTRIHSLHVCRKLPTSDTFKTVRCVTNPLTSNDQ---TAARRSANYPPSVWDYDFVQSLGCDYTEEKYTRPADEMKDEVKRLINETTD-PLAKLELIDAVQRLGLKYQFETEIKNGVDFVYKNSSDAWLFDDLYATALRFRLLRQHGCNAPQEVFARFKDETGNFRTQLCEDVKGLLSLYEASFFGLEGETIIDEAKAFTTTNLKNM-EGEISPSLARKVGHALDMPLHWRLTRVEARWFIDTYEQEQDMNPTLLQLAKLDYNIVQSVHRKEVSKLARWWVDMGLDKMSFARDRLVENYFWSCGVFFEPQFGSFREMETKVASLITTVDDIYDVYGTLEELELFTDLVDRWDINGIDKLPRNIKTCLLGMYNTSNEIGYWTLKEKGFNIIPYLSKAWADLCKAYFKEARWYHGGHKPTLEEYLENAVVSVSAPLLLLGCYFLTAEEITEEALHYIDKHPSIMRCSSTLLRLANDLGTSSDELARGDNLKSIQCYMNETGASEEAAREYISSLVHKTWKTMNKEMFECYPFSEPFLSAIPNVGRTAQCIYQYGDGHGVPDRWTKDHLMS 578
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A5D8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524537.1}))
HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 342/537 (63.69%), Postives = 430/537 (80.07%), Query Frame = 0
Match: A0A5J5A5D8 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524537.1}))
HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 342/537 (63.69%), Postives = 430/537 (80.07%), Query Frame = 0
Query: 53 RRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICE--ADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLN 587
RR+ANY PS WDY+ V+SL +Y E+KY +E+K++VKRLI+ TD PLAKLEL+D+V RLGL YQF+ +IK +D + + D+ L +DL++ AL FR+LR+HGY V Q+VF +F DETG F+ L EDVKGL SLYEASF+G +GE I+D+AKAF + +LK++ +G +SP +ARKV HALDMPLHW+L RVEA W+I TYEQEQ+ P LL+LAKLDYNI+QSVH+KEVSKLA WWVD+GL + FARDRL+E+YFW+ G+ P++ +FR+M TKV LITT+DD+YDVYG+LEEL+LFTD VDRWDI EIDKLP +IKT LL M+NT NEIGYWT++E+ FNIIPYL K WA+LCKAYL+EA WYH G+KPT+EEY+ENA VS L+ YFLTA++IT EAL +IDK PSIM C S L+RL NDLGTSS+ELARGD LK++QCYMN+TG+SEE +R+++ LVH+TWK +NK++ YPFSEPFLSA PN+ RT+Q YQYGDGHG+P WTKDHL SLLV P LN
Sbjct: 9 RRSANYPPSVWDYDFVQSLGCDYTEEKYTRPADEMKDEVKRLINETTD-PLAKLELIDAVQRLGLKYQFETEIKNGVDCVYKNSIDAWLFDDLYAPALRFRLLRQHGYNVPQEVFARFKDETGNFRTQLCEDVKGLLSLYEASFFGLEGETIIDEAKAFTTTNLKSM-EGEISPSLARKVGHALDMPLHWRLTRVEARWFIETYEQEQDMNPTLLQLAKLDYNIMQSVHRKEVSKLARWWVDMGLDKMSFARDRLMENYFWSCGVFFEPQFGSFREMETKVASLITTIDDIYDVYGTLEELELFTDLVDRWDINEIDKLPRNIKTCLLGMYNTSNEIGYWTLKEKGFNIIPYLSKAWADLCKAYLKEARWYHGGHKPTLEEYLENAVVSASAPLLQLGCYFLTAEEITEEALHYIDKHPSIMRCSSTLLRLANDLGTSSYELARGDNLKSIQCYMNETGASEEAAREYISSLVHKTWKTMNKEMFECYPFSEPFLSAIPNVGRTAQCIYQYGDGHGVPDRWTKDHLMSLLVRPIPLN 543
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9RPM0 (((R)-limonene synthase, putative {ECO:0000313|EMBL:EEF46636.1}) (4.2.3.20 {ECO:0000313|EMBL:EEF46636.1}))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 351/600 (58.50%), Postives = 460/600 (76.67%), Query Frame = 0
Match: B9RPM0 (((R)-limonene synthase, putative {ECO:0000313|EMBL:EEF46636.1}) (4.2.3.20 {ECO:0000313|EMBL:EEF46636.1}))
HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 351/600 (58.50%), Postives = 460/600 (76.67%), Query Frame = 0
Query: 1 MALHGLFS--PFLVTA--------PSRMAIPSSNAPKLCASKPVQCITTPVTTTDHDQGSASRRNANYVPSFWDYN-VVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICEADSQLGND-LHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLNE 588
MALH FS P L+T+ P + P++ KL S ++C+++ V T + +RR+ANY S WDY+ +++SL++N E KY QVE LKE+V+ + PLAKLEL+D+V RLGL Y F+ +IK A+ + S GND L+S AL +R+ R+HGY VS+DVF++F DETGKFKA+L +D KGL S+YEASF+G +GEDI+D+AKAF++ HLK+L +G L +ARKV HALDMP+HW+L R+EA W+I TYEQEQ+ P LL+LAKL++N+VQ++HQKEVSKLA WW+D+GL + FARDRLVEHY+W G+ P++ FR+M TK+ICLITT+DDVYDVYGSLEEL+LFTD+VDRWD+ IDKLP I+T+ LAM+NT NEIGY +RE+ FNIIPYL K WANLCKAYL EA WYH GYKPT+E+Y++NA VSI LMLF +YFLTADKITVEALD+I+K+PS+M C S+++RLTNDLGTSS ELARGD LK++QCYMN+TG S+ V+R H++DLVHE WK++NK++LG+YPF + F+ ANPN+AR +Q FY YGDGHG+P + TK L LL+EP +N+
Sbjct: 1 MALHTTFSFSPALLTSTRLPAFHLPKNVPQPTT---KLHKSVSIRCLSSDVITIE--DPLTTRRSANYPSSAWDYDHLLQSLAANDSEDKYRRQVEGLKEEVRESLMNGEMKPLAKLELVDAVQRLGLKYHFEMEIKNALHILHSNASSDGNDELYSVALRYRLFRQHGYDVSKDVFERFKDETGKFKASLCKDAKGLLSMYEASFFGLEGEDIIDEAKAFSTGHLKDL-KGTLCGSLARKVEHALDMPVHWRLTRMEARWFIDTYEQEQHLNPTLLRLAKLEFNMVQAIHQKEVSKLARWWMDLGLNKMAFARDRLVEHYYWCCGMAFEPQFGLFREMGTKIICLITTIDDVYDVYGSLEELELFTDFVDRWDVNGIDKLPDPIRTIFLAMYNTGNEIGYTIIREKGFNIIPYLSKTWANLCKAYLVEAKWYHKGYKPTLEKYLDNAVVSIAAPLMLFSSYFLTADKITVEALDYINKLPSLMRCSSLVLRLTNDLGTSSDELARGDNLKSIQCYMNETGVSDNVARDHINDLVHEAWKVMNKEMLGNYPFQDTFIHANPNLARAAQFFYHYGDGHGVPGNETKGRLFPLLLEPVPVNQ 594
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F1Y7 ((Uncharacterized protein {ECO:0000313|EMBL:THG23470.1}))
HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 332/510 (65.10%), Postives = 411/510 (80.59%), Query Frame = 0
Match: A0A4S4F1Y7 ((Uncharacterized protein {ECO:0000313|EMBL:THG23470.1}))
HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 332/510 (65.10%), Postives = 411/510 (80.59%), Query Frame = 0
Query: 77 EKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICEADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTL 586
E+KY + +K++VK LI+ PLAKLEL+D+V RLGL Y F+ +IKQ++D + D+ +DLH+TAL FR+LR+HGY V +DVF+ F DETG FK +L EDVKGL SLYEASF+G GE I+D+AK F + +LKN+ +G++SP + RKV HALDMPLHW+L RVEA W+I TYEQEQN P LL+ AKLDYN+VQSVHQKEV LA WWVD+GL + FARDRLVEHY W +G+V P++ AFRDM TK+I LITT+DD+YDVYG+L E++LFTD+VDRWD+ IDKLP +I+T LLA+FNTVNEIGYWT++ R FNIIPYL K WA++ KA L+EA WYHSGYKPT+ EY++NA VSIG L LF +YFLT + I EAL +IDK+PSIM C S+L+RLTNDLGTSS ELARGD LKAVQCYMN+TG+SEEV+R ++++LVHETWK +NK + SYPFSEPFLSANPN+ RT+Q FYQYGDGHGIP +WTKDHL SLLV+P L
Sbjct: 13 EEKYMREAYNMKDEVKGLINGVM-YPLAKLELIDAVQRLGLKYHFEGEIKQSLDDLIHNDAWFSDDLHATALRFRLLRQHGYDVPKDVFESFKDETGNFKTSLFEDVKGLLSLYEASFFGLDGETIIDEAKIFTTANLKNI-KGDMSPSVVRKVGHALDMPLHWRLTRVEARWFIETYEQEQNMSPILLEFAKLDYNMVQSVHQKEVGNLARWWVDMGLDKMSFARDRLVEHYLWCSGMVFEPKFGAFRDMGTKIISLITTIDDIYDVYGALHEIELFTDFVDRWDVNGIDKLPHNIRTCLLALFNTVNEIGYWTLKNRGFNIIPYLSKAWADVLKACLKEAKWYHSGYKPTLGEYLDNAVVSIGAPLALFTSYFLTTENINEEALHYIDKLPSIMRCSSMLLRLTNDLGTSSDELARGDNLKAVQCYMNETGASEEVARDYINNLVHETWKTMNKGMFESYPFSEPFLSANPNLGRTAQCFYQYGDGHGIPHNWTKDHLISLLVQPIPL 520
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3DEL6 ((Terpene_synth domain-containing protein/Terpene_synth_C domain-containing protein {ECO:0000313|EMBL:GAV90924.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 346/591 (58.54%), Postives = 444/591 (75.13%), Query Frame = 0
Match: A0A1Q3DEL6 ((Terpene_synth domain-containing protein/Terpene_synth_C domain-containing protein {ECO:0000313|EMBL:GAV90924.1}))
HSP 1 Score: 706.057 bits (1821), Expect = 0.000e+0
Identity = 346/591 (58.54%), Postives = 444/591 (75.13%), Query Frame = 0
Query: 6 LFSPFLVTAP--SRMAIPSSNA-PKLCASKPVQCITTPVTTTDHDQ-GSASRRNANYVPSFWDYNVVKSLSSNYDEKKYEMQVEELKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRI---CEADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPF-SEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLNE 588
L SPFLV A S + P + P +SK +C+ HD S +RR+ANY PS WDY V+S SS+Y ++K Q+E LK +VK LI+ E PL KLEL+D+V RLGLNY F+ +IK+A++ + + D L + L+STAL FRILR+HGY Q +F +F D+ F A+L EDVKGL SLYEASF+G QGE IMD+AKAF + HLK+L + ++ + RKV H+LDMPLHW+L RVEA W+I TYEQE N P LL+LAKLDYNIVQS H+KEVS LA WWV++GL + F RDRL EH+ W++G+V P++ AFR+M TK+ICL+TT+DD+YDVYG LEEL+LFTD+VDRWDIT ID+LP IKT LLAM+NT NEIGYWT++ER FN+IPYLRK WA++CK LREA WYH G+KPT+EEY+ NA VSIG L+LFC YFLTA KIT EAL ++DK+PSI+ C S+++RLTNDL TSS ELARGD LK+ QCYMN+TG+SEEV+R+H+ +++ ETWK +NK + Y F EPFLSANPN++RT+ +FYQYGDGHG P + TKD + +LLV+P +N+
Sbjct: 8 LVSPFLVPAARLSSLQSPKNGCRPSSSSSKSARCLAIV-----HDPPSSVTRRSANYSPSVWDYEFVQSFSSDYTDEKQVRQLEVLKNEVKGLINREITDPLDKLELIDAVQRLGLNYHFEMEIKKALETVNSKTDDDYWLNHGLYSTALRFRILRQHGYNTPQGLFDRFKDKNDNFNASLCEDVKGLLSLYEASFFGLQGETIMDEAKAFTTTHLKDL-KVPITASLDRKVAHSLDMPLHWRLNRVEARWFIDTYEQELNMNPTLLELAKLDYNIVQSTHRKEVSNLARWWVNMGLNKMTFVRDRLTEHFIWSSGMVFEPQFGAFREMGTKIICLVTTIDDLYDVYGFLEELELFTDFVDRWDITGIDQLPSAIKTCLLAMYNTSNEIGYWTIKERGFNVIPYLRKMWADICKTLLREAKWYHKGHKPTLEEYLNNAVVSIGAPLVLFCTYFLTAQKITKEALVYVDKLPSIVRCSSMILRLTNDLKTSSDELARGDNLKSTQCYMNETGASEEVAREHIMNMIDETWKTMNKQMFDHYSFIEEPFLSANPNLSRTAHSFYQYGDGHGNPNYSTKDTITALLVQPVPINQ 592
BLAST of XM_017393778.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A388 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524546.1}))
HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0
Identity = 329/503 (65.41%), Postives = 411/503 (81.71%), Query Frame = 0
Match: A0A5J5A388 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8524546.1}))
HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0
Identity = 329/503 (65.41%), Postives = 411/503 (81.71%), Query Frame = 0
Query: 87 LKEDVKRLIHAETDVPLAKLELLDSVHRLGLNYQFQKDIKQAIDRICE--ADSQLGNDLHSTALLFRILREHGYTVSQDVFQKFTDETGKFKANLGEDVKGLCSLYEASFYGFQGEDIMDQAKAFASEHLKNLLQGNLSPIMARKVHHALDMPLHWKLPRVEAVWYIHTYEQEQNKIPNLLKLAKLDYNIVQSVHQKEVSKLASWWVDIGLGNLPFARDRLVEHYFWANGIVSGPEYSAFRDMATKVICLITTVDDVYDVYGSLEELKLFTDYVDRWDITEIDKLPMHIKTVLLAMFNTVNEIGYWTMRERDFNIIPYLRKQWANLCKAYLREATWYHSGYKPTVEEYMENASVSIGGLLMLFCAYFLTADKITVEALDFIDKVPSIMWCPSVLIRLTNDLGTSSHELARGDILKAVQCYMNDTGSSEEVSRKHVDDLVHETWKILNKDLLGSYPFSEPFLSANPNIARTSQTFYQYGDGHGIPQHWTKDHLKSLLVEPFTLN 587
+K++VK +I+ TD PLAKLEL+D+V RLGL Y F+ +IK +D I + +D+ L +DL++TAL FR+LR+HGY + Q+VF +F DET FK L EDVKG+ SLY+ASF+G +GE I+D+AK F + +LKN+ +G++SP +ARKV HALDMPLHW+L RVEA W+I TYEQEQ+ P LL+LAKLDYNIVQSVH+KEVSKLA WWVD+GL + FARDRLVEHYFW +G+V P++ +FRDM TKVI LITT+DD+YDVYGSLEEL+LFTD+VDRW I IDKLP +I+T LLAM+NT NEIGYWT++ER FNIIPYL K WA+LCKAY +EA WYH G+KPT+EEY++NA VSI LMLFC+Y LT +KIT E L +IDK+PSIM C S+L+RLTNDLGTSS ELARGD LKAVQCYMN+TG+ EE +R++++ LVH+ WK +NK++ YPFSEPFLSANPN+ RT+Q FYQYGDGHG+P WTKDHL SLL +P LN
Sbjct: 1 MKDEVKCMINEATD-PLAKLELIDAVQRLGLKYHFETEIKNGVDFIYKDRSDAWLYDDLYATALRFRLLRQHGYNIPQEVFARFMDETSNFKTQLCEDVKGMLSLYDASFFGLEGETIIDEAKTFTTTNLKNI-KGDISPSLARKVGHALDMPLHWRLTRVEARWFIDTYEQEQDMNPTLLELAKLDYNIVQSVHRKEVSKLARWWVDMGLDKMSFARDRLVEHYFWCSGMVFEPQFGSFRDMGTKVISLITTIDDIYDVYGSLEELELFTDFVDRWHINGIDKLPRNIRTCLLAMYNTGNEIGYWTLKERGFNIIPYLSKAWADLCKAYFKEARWYHGGHKPTLEEYLDNAVVSIAAPLMLFCSYSLTTEKITEETLHYIDKLPSIMRCSSILLRLTNDLGTSSDELARGDNLKAVQCYMNETGAPEEAAREYINSLVHKIWKTMNKEMFECYPFSEPFLSANPNLGRTAQCFYQYGDGHGVPDRWTKDHLMSLLFQPIPLN 501
| Match Name | Stats | Description |
|---|---|---|
| A0A2H5BX73 | E-Value: 0.000e+0, PID: 84.92 | (Terpene synthase {ECO:0000313|EMBL:AUG98171.1})[more] |
| A0A0D3ML99 | E-Value: 0.000e+0, PID: 68.26 | (Limonene synthase {ECO:0000313|EMBL:AIO10970.1}) ... [more] |
| A0A222EMT2 | E-Value: 0.000e+0, PID: 62.69 | (Monoterpene synthase {ECO:0000313|EMBL:ASP27474.1... [more] |
| A0A5J5BQX1 | E-Value: 0.000e+0, PID: 63.48 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8545... [more] |
| A0A5J5A5E9 | E-Value: 0.000e+0, PID: 60.93 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| A0A5J5A5D8 | E-Value: 0.000e+0, PID: 63.69 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
| B9RPM0 | E-Value: 0.000e+0, PID: 58.50 | ((R)-limonene synthase, putative {ECO:0000313|EMBL... [more] |
| A0A4S4F1Y7 | E-Value: 0.000e+0, PID: 65.10 | (Uncharacterized protein {ECO:0000313|EMBL:THG2347... [more] |
| A0A1Q3DEL6 | E-Value: 0.000e+0, PID: 58.54 | (Terpene_synth domain-containing protein/Terpene_s... [more] |
| A0A5J5A388 | E-Value: 0.000e+0, PID: 65.41 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8524... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |