XM_017397979.1

Resource Type: 
Polypeptide
Name: 
XM_017397979.1
Identifier: 
XM_017397979.1-protein
Sequence: 
MPEQEPEPCLPNNLEWPAPDLPYSDTIQELHAVIEKDWDSLRRSACQTAA
GRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRT
LWFDNNLEAAVNSFGGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEV
LQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFV
PQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTA
LSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKL
RSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP
Sequence Length: 
334
Sequence Checksum: 
68a28dab132d818023cf41d74c13e54b
View location in JBrowse: 
DCARv2_Chr5:39864558..39866161+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017397979.1, derives from mRNA, XM_017397979.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B4S7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537628.1}))

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 256/329 (77.81%), Postives = 289/329 (87.84%), Query Frame = 0
 
Query:   10 LPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            +P +  WP    PDL Y+DT++ELHA IEK+WDSL RSACQTAAGRALWKHV+HDPLAEVLAGETY+ SLY+KIKKD  NNA+EISGVILAVRTLWFD+ LEAA+N+F GG AQVVLLGAGMDARAYRLS LKE++V+EVDF EVLQ K TI+QA+  ST E QHLM+ AKSL RVA DI+D +WLEKLQ+SGFVP+K TVW+LEGILYYL+HS AM VLK IA+ CTLTHT+LLADFMNK ST LS+S+FHFYSDWPD LLPSLGFSDVKLSQIGDPDA++GLL DPLNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct:   23 MPEDRTWPELKLPDLLYTDTVRELHAAIEKEWDSLWRSACQTAAGRALWKHVVHDPLAEVLAGETYMRSLYDKIKKDRLNNAREISGVILAVRTLWFDSKLEAALNAFDGGEAQVVLLGAGMDARAYRLSCLKETNVFEVDFPEVLQTKTTILQASAESTNEHQHLMMTAKSLTRVAADIRDSDWLEKLQMSGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIADYCTLTHTVLLADFMNKPSTTLSNSMFHFYSDWPDHLLPSLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQKIP 351
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DR32 ((Uncharacterized protein {ECO:0000313|EMBL:THG05570.1}))

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 250/323 (77.40%), Postives = 283/323 (87.62%), Query Frame = 0
 
Query:   16 WPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            WP    PDL ++DT+Q++HA IE +WDSLR+SACQTAAGRALW HV+HDPLAE+ AGETYL SLY KIKKD   NA+E+SGVILAVRT+WFD+ +EAA+NSF GGAAQVVLLGAGMDARAYRLS LKE+DV+EVDF EVLQMK TI+QAA  ST +CQH  + AKSLNRV  DI+D++WL+KLQISGFVP+K TVW+LEGILYYL+HS AM VLK IA NCTLTHT+LLADFMNK ST LSSS+FHFYSDWPD LLPSLGFSDV LSQIGDPDA++GLL DPLNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct:   14 WPELKLPDLLFTDTVQQIHASIENEWDSLRQSACQTAAGRALWNHVVHDPLAELFAGETYLRSLYGKIKKDRLTNAREVSGVILAVRTMWFDSKIEAALNSFYGGAAQVVLLGAGMDARAYRLSCLKETDVFEVDFPEVLQMKTTILQAATESTNDCQHAKMTAKSLNRVEADIRDNDWLQKLQISGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIAANCTLTHTVLLADFMNKPSTTLSSSIFHFYSDWPDHLLPSLGFSDVSLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQAIP 336
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1E6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49648.1}))

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 252/332 (75.90%), Postives = 283/332 (85.24%), Query Frame = 0
 
Query:    7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            E  +P +  WP    PDL  + T++ELHA IE +WD+LR+SACQTAAGRALWKHV+HDPLAE+LAGETYL SLY+KIK D  NNA+E+SGVILAVRTLWFD+ LEAA+NSF GG AQVV LGAGMDARAYRLS LKES V+EVDF EVLQMK TI+QAA  ST E Q L +AAKSL+RVA DI D++WLEKLQ+SGFVP+K TVW+LEGILYYL+HS AM VLK IA+ CTLT T+LLADFMNK ST LS S+FHFYSDWPD LLP LGFSDVKLSQIGDPDA++GLL DPLNLFNKLRSLPR+LQTHPDDGTPCRRLYLVQ SGSP Q IP
Sbjct:    5 ENGVPEDPTWPEFKLPDLLSTGTVRELHAAIENEWDTLRQSACQTAAGRALWKHVVHDPLAELLAGETYLRSLYDKIKTDRLNNAREVSGVILAVRTLWFDSKLEAALNSFDGGEAQVVFLGAGMDARAYRLSCLKESKVFEVDFPEVLQMKTTILQAAAESTNEHQSLTMAAKSLSRVAADITDNDWLEKLQLSGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIADYCTLTRTVLLADFMNKPSTTLSDSIFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCRRLYLVQASGSPDQTIP 336
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZZ65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49647.1}))

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 252/332 (75.90%), Postives = 284/332 (85.54%), Query Frame = 0
 
Query:    7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            E  +P +  WP    PDL  + T++ELHA IE +WD+LRRSACQTAAGRALWKHV+HDPLAE+LAGETYL SLY+KIK D  NNA+E+SGVILAVRTLWFD+ LEAA+NSF GG AQVV LGAGMDARAYRLS LKES V+EVDF EVLQMK TI+QAA  ST E Q L +AAKSL+RVA DI D++WLEKLQ+SGFVP+K TVW+LEGILYYL+HSQAM +LK IA+ CTLTHT+LLADFMNK ST LS S+FHFYSDWPD LLP LGFSDVKLSQIGDPDA++GLL DPLNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q  P
Sbjct:    5 ENGVPEDPTWPEFKLPDLLSTGTVRELHAAIENEWDTLRRSACQTAAGRALWKHVVHDPLAELLAGETYLRSLYDKIKTDRLNNAREVSGVILAVRTLWFDSKLEAALNSFDGGEAQVVFLGAGMDARAYRLSCLKESKVFEVDFPEVLQMKTTILQAAAESTNEHQSLTMAAKSLSRVAADITDNDWLEKLQLSGFVPEKNTVWVLEGILYYLSHSQAMEILKIIADYCTLTHTVLLADFMNKPSTTLSDSIFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQKTP 336
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DGX1 ((Uncharacterized protein {ECO:0000313|EMBL:THG02020.1}))

HSP 1 Score: 515.768 bits (1327), Expect = 0.000e+0
Identity = 249/328 (75.91%), Postives = 280/328 (85.37%), Query Frame = 0
 
Query:   11 PNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGG-AAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            P    WP    PDL ++DT++ LH  IE +WDSLRRSACQTAAGRALWKHVIHDP AE+LAGE +L SLYEKIKKD  +NA+E+SGV+LAVRTLWFD  +EAA++SF G AAQVVLLGAGMDARAYRLS LKES+V+EVD  EVLQ K TI+QAA  ST + QH+M+ AKSLNRVA DI+D +WL+KLQISGF P+K TVW+LEGILYYL+HS AM VLK IA NCTLT T+LLADFMNK ST LSSSVFHFYSDWPD LLPSLGFSDVKLSQIGDPDA++GLL DPLNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct:    9 PEERAWPELKLPDLLFTDTVRGLHEAIETEWDSLRRSACQTAAGRALWKHVIHDPHAELLAGEPFLRSLYEKIKKDRHSNAREVSGVMLAVRTLWFDEKIEAALSSFNGRAAQVVLLGAGMDARAYRLSCLKESNVFEVDLPEVLQTKTTILQAATESTNDHQHVMMTAKSLNRVAADIRDKDWLQKLQISGFDPEKNTVWVLEGILYYLSHSHAMEVLKIIANNCTLTQTVLLADFMNKPSTTLSSSVFHFYSDWPDHLLPSLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQTIP 336
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGR4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528647.1}))

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 248/332 (74.70%), Postives = 281/332 (84.64%), Query Frame = 0
 
Query:    7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            E  +P +  WP    P+L ++ T++ELHA IE +WD+LRRSACQTAAGRALWKHV+HDP+AE+LAGETYL S Y+KIKKD  NNA+E+SGVILAVRTLWFD+ LE A+NSF GG AQVV LGAGMDARAYRLS LK+S V+EVDF EVLQMK TI+QAA  ST E Q  M+ AKSL+RVA DI+D++WLEKLQISGFVP+K TVWILEGILYYL+HS AM VLK IA+ CTLT T+LLADFMNK ST LS+SVFHFYSDWPD LLP LGFSDVKLSQIGDPDA++GLL DPLNLFNKLRSLPR LQTHP+DG PC RLYLVQ SGSP Q IP
Sbjct:    5 ESGMPEDWTWPELKLPELLFTGTVRELHAAIENEWDTLRRSACQTAAGRALWKHVVHDPIAELLAGETYLRSFYDKIKKDRLNNAREVSGVILAVRTLWFDSKLEVALNSFDGGEAQVVFLGAGMDARAYRLSCLKDSKVFEVDFPEVLQMKTTILQAAAESTNEHQSPMMTAKSLSRVAADIRDNDWLEKLQISGFVPEKNTVWILEGILYYLSHSHAMEVLKIIADYCTLTRTVLLADFMNKPSTTLSNSVFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRTLQTHPEDGKPCCRLYLVQASGSPDQTIP 336
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K3W6 ((Leucine carboxyl methyltransferase {ECO:0000313|EMBL:KVI06558.1}))

HSP 1 Score: 512.301 bits (1318), Expect = 0.000e+0
Identity = 243/324 (75.00%), Postives = 278/324 (85.80%), Query Frame = 0
 
Query:   10 LPNNLEWPAPDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVI 333
            LP++  WP P L YS+ ++ELHA IE DWDS+++SACQTAAGRALWKHV+HDPLAE+ AGETYL SLYEKIKKD  NNA+E+SGVILAVRTLWF++ LEAAV SFGG AQVVLLGAGMD RAYRL  LK+SDVYE+DF EVLQMK+T+++AA+ S  E    M+ AKSL R+A DI+D++W +KLQ SGF P+K TVWILEGI+YYL HSQAM VLKTIA+NC LT T+LLADFMNKQST LSSS FHFYSDWPD LLPSLGFSDVKLSQIGDPDA+YGLL DPLNLFNKLR LPR++Q HPDDGTPC RLYLVQ SGSP+Q I
Sbjct:   32 LPDHQNWPRPGLLYSEALRELHATIENDWDSVKQSACQTAAGRALWKHVVHDPLAELFAGETYLKSLYEKIKKDRLNNAREVSGVILAVRTLWFESKLEAAVKSFGGGAQVVLLGAGMDTRAYRLDCLKDSDVYEMDFPEVLQMKDTLLEAAMESINEP---MLTAKSLRRIAVDIRDEDWFKKLQASGFKPEKNTVWILEGIIYYLEHSQAMGVLKTIADNCNLTETVLLADFMNKQSTTLSSSNFHFYSDWPDHLLPSLGFSDVKLSQIGDPDADYGLLHDPLNLFNKLRGLPRSIQNHPDDGTPCCRLYLVQASGSPNQTI 352
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7HSG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5955802.1}))

HSP 1 Score: 508.834 bits (1309), Expect = 3.580e-180
Identity = 246/328 (75.00%), Postives = 278/328 (84.76%), Query Frame = 0
 
Query:   11 PNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGG-AAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            P    WP    PDL ++DT++ LH  IE +WDSL+RSACQTAAGRALWKHVIHDP AE+LAGE +L SLYEKIKKD  NNA+E+S V+LAVRTLWFD  +EAA++SF G AAQVVLLGAGMDARAYRLS LKES+V+EVD  EVLQ K TI+QAA  ST + QH+M+ +KSLNRVA DI+D +WL+KLQISGF P+K TVW+LEGILYYL+HS AM VLK IA NCTLT T+LLADFMNK ST LSSSVFHFYSDWPD LLPSLGFSDVKLSQIGDPDA++ LL DPLNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct:   32 PEERAWPELKLPDLLFTDTVRGLHEAIETEWDSLQRSACQTAAGRALWKHVIHDPHAELLAGEPFLRSLYEKIKKDRHNNAREVSRVMLAVRTLWFDEKIEAALSSFNGRAAQVVLLGAGMDARAYRLSCLKESNVFEVDLPEVLQTKTTILQAATESTNDHQHVMMTSKSLNRVAADIRDKDWLQKLQISGFDPEKNTVWVLEGILYYLSHSHAMEVLKIIANNCTLTQTVLLADFMNKPSTTLSSSVFHFYSDWPDHLLPSLGFSDVKLSQIGDPDAHFRLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQTIP 359
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1W5Q6 ((Uncharacterized protein {ECO:0000313|EMBL:KAB1220592.1}))

HSP 1 Score: 506.908 bits (1304), Expect = 9.070e-180
Identity = 244/332 (73.49%), Postives = 284/332 (85.54%), Query Frame = 0
 
Query:    7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGG-AAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 334
            E  LP +  WP    PDL ++D ++E+HA IE +WD L+RSACQTAAGRALWKH+IHDPLA++LAGE YL SLYEKIKKD  NNA+E+SGVILAVRTLWFD+ LEA +NSF G  AQVV+LGAGMDARAYRLS LKESDV+EVDF +VLQ+K T++QAA+ ST E QHL  +AKSL RVA DI+D++WL+KLQISGFVP+K T+W+LEGILYYL+HSQAM VLK IAE C LTHT+LLADFMNK +T LSSS+ HFYSDWPD LLPSLGFS VKLSQIGDPDA++GL+ DPLNLFNKLRSLPR++Q HPDDGTPC RLYLVQ SGSP+Q IP
Sbjct:    5 ENALPQDPTWPELKLPDLLHTDVVREVHATIENEWDPLQRSACQTAAGRALWKHLIHDPLADLLAGEAYLTSLYEKIKKDRINNAREVSGVILAVRTLWFDSQLEAVLNSFSGRGAQVVILGAGMDARAYRLSCLKESDVFEVDFPKVLQVKTTLLQAAMESTNEHQHLTQSAKSLTRVAVDIRDNDWLDKLQISGFVPEKNTIWLLEGILYYLSHSQAMQVLKIIAEKCVLTHTVLLADFMNKPTT-LSSSILHFYSDWPDHLLPSLGFSHVKLSQIGDPDADFGLMHDPLNLFNKLRSLPRSVQHHPDDGTPCCRLYLVQASGSPNQTIP 335
[Close]
BLAST of XM_017397979.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZTJ5 ((uncharacterized protein LOC107420254 {ECO:0000313|RefSeq:XP_015884638.1}))

HSP 1 Score: 507.679 bits (1306), Expect = 1.859e-179
Identity = 241/331 (72.81%), Postives = 284/331 (85.80%), Query Frame = 0
 
Query:    7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGGA-AQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEGILYYLTHSQAMSVLKTIAENCTLTHTILLADFMNKQSTALSSSVFHFYSDWPDQLLPSLGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVI 333
            E  LP   +WP    PDL +SDT++++HA IEK+WD L+RSACQTAAGRALWKHVIHDPLA++LAGETYL SL+EKIK+D +N+A+EISGVILAVRTLW D+ LEAA++SF  A  QVVLLGAGMDARAYRLSFLKES V+EVD  EVLQMK T++QAA+ +T   QHL + AKSL+RV  DI+ ++WLEKLQISGFVP+K TVW+LEG+LYYL+HSQAM VLK IA+ C LT T+LLADFMNK ST LS+S+FHFYSDWPD LLPSLGFS VKLSQIGDPDA++GL+PDPLNLFNKLRSLPR++QTHPDDG PC RLYLVQ SGSP++ I
Sbjct:   44 ENGLPEFQKWPELKLPDLLFSDTVRQVHATIEKEWDPLQRSACQTAAGRALWKHVIHDPLADLLAGETYLTSLHEKIKRDCTNDAREISGVILAVRTLWIDSKLEAALHSFNAADTQVVLLGAGMDARAYRLSFLKESHVFEVDLPEVLQMKTTLLQAAMEATNYHQHLTMKAKSLSRVVADIRCNDWLEKLQISGFVPEKNTVWVLEGVLYYLSHSQAMQVLKIIADKCKLTQTVLLADFMNKASTTLSNSIFHFYSDWPDHLLPSLGFSHVKLSQIGDPDAHFGLMPDPLNLFNKLRSLPRSIQTHPDDGKPCCRLYLVQASGSPTKAI 374
Match NameStatsDescription
A0A5J5B4S7E-Value: 0.000e+0, PID: 77.81(Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more]
A0A4S4DR32E-Value: 0.000e+0, PID: 77.40(Uncharacterized protein {ECO:0000313|EMBL:THG0557... [more]
A0A5B7A1E6E-Value: 0.000e+0, PID: 75.90(Uncharacterized protein {ECO:0000313|EMBL:MPA4964... [more]
A0A5B6ZZ65E-Value: 0.000e+0, PID: 75.90(Uncharacterized protein {ECO:0000313|EMBL:MPA4964... [more]
A0A4S4DGX1E-Value: 0.000e+0, PID: 75.91(Uncharacterized protein {ECO:0000313|EMBL:THG0202... [more]
A0A5J5AGR4E-Value: 0.000e+0, PID: 74.70(Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more]
A0A118K3W6E-Value: 0.000e+0, PID: 75.00(Leucine carboxyl methyltransferase {ECO:0000313|E... [more]
A0A7J7HSG0E-Value: 3.580e-180, PID: 75.00(Uncharacterized protein {ECO:0000313|EMBL:KAF5955... [more]
A0A6A1W5Q6E-Value: 9.070e-180, PID: 73.49(Uncharacterized protein {ECO:0000313|EMBL:KAB1220... [more]
A0A6P3ZTJ5E-Value: 1.859e-179, PID: 72.81(uncharacterized protein LOC107420254 {ECO:0000313... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.