Resource Type:
Polypeptide
Name:
XM_017397980.1
Identifier:
XM_017397980.1-protein
Sequence:
MPEQEPEPCLPNNLEWPAPDLPYSDTIQELHAVIEKDWDSLRRSACQTAA
GRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRT
LWFDNNLEAAVNSFGGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEV
LQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFV
PQKKTVWILEGFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTH
PDDGTPCRRLYLVQGSGSPSQVIP
Sequence Length:
274
Sequence Checksum:
46b9813faa3bbb384056b6c585e10fed
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017397980.1, derives from mRNA, XM_017397980.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
back to top
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QEG1 ((Uncharacterized protein {ECO:0000313|EMBL:TKS07327.1}))
HSP 1 Score: 376.326 bits (965), Expect = 1.163e-129
Identity = 187/294 (63.61%), Postives = 220/294 (74.83%), Query Frame = 0
Match: A0A4U5QEG1 ((Uncharacterized protein {ECO:0000313|EMBL:TKS07327.1}))
HSP 1 Score: 376.326 bits (965), Expect = 1.163e-129
Identity = 187/294 (63.61%), Postives = 220/294 (74.83%), Query Frame = 0
Query: 11 PNNLEWPAPDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILE---------------------------------GFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQ 271
P LE P L Y+DT+Q LHA I+ +WDSLRRSACQTAAGRALWKHVIHDP A++LAGETYL S +EKIK D NA+E SGVILAVRTLWFD+ +EAA++SF G QVVLLGAGMDARAYRLS LKESDV+EVDF EVL++K T+++AA + E H + AKSLNRVA DI++++WLEKLQISGFVP+K TVW+LE GFS VKLSQ+GDPDA++GL+ DPLNLFNKLRSLPR++QTHPDDGTPC RLYLV+ SG PSQ
Sbjct: 12 PQWLELKLPRLLYTDTVQGLHATIQSEWDSLRRSACQTAAGRALWKHVIHDPFADLLAGETYLKSFHEKIKNDRLKNARETSGVILAVRTLWFDSKIEAALSSFNGEGQVVLLGAGMDARAYRLSCLKESDVFEVDFPEVLEVKTTLLKAATETIDEHLHPRITAKSLNRVAADIRNNDWLEKLQISGFVPEKNTVWVLEVLLADFMNKPSTTLSNSIFHFYSDWPDHLLPSLGFSHVKLSQLGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCCRLYLVEASGLPSQ 305
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2K2BPV8 ((Uncharacterized protein {ECO:0000313|EMBL:PNT51813.1}))
HSP 1 Score: 376.326 bits (965), Expect = 1.163e-129
Identity = 187/294 (63.61%), Postives = 220/294 (74.83%), Query Frame = 0
Match: A0A2K2BPV8 ((Uncharacterized protein {ECO:0000313|EMBL:PNT51813.1}))
HSP 1 Score: 376.326 bits (965), Expect = 1.163e-129
Identity = 187/294 (63.61%), Postives = 220/294 (74.83%), Query Frame = 0
Query: 11 PNNLEWPAPDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILE---------------------------------GFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQ 271
P LE P L Y+DT+Q LHA I+ +WDSLRRSACQTAAGRALWKHVIHDP A++LAGETYL S +EKIK D NA+E SGVILAVRTLWFD+ +EAA++SF G QVVLLGAGMDARAYRLS LKESDV+EVDF EVL++K T+++AA + E H + AKSLNRVA DI++++WLEKLQISGFVP+K TVW+LE GFS VKLSQ+GDPDA++GL+ DPLNLFNKLRSLPR++QTHPDDGTPC RLYLV+ SG PSQ
Sbjct: 12 PQWLELKLPRLLYTDTVQGLHATIQSEWDSLRRSACQTAAGRALWKHVIHDPFADLLAGETYLKSFHEKIKNDRLKNARETSGVILAVRTLWFDSKIEAALSSFNGEGQVVLLGAGMDARAYRLSCLKESDVFEVDFPEVLEVKTTLLKAATETIDEHLHPRITAKSLNRVAADIRNNDWLEKLQISGFVPEKNTVWVLEVLLADFMNKPSTTLSNSIFHFYSDWPDHLLPSLGFSHVKLSQLGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCCRLYLVEASGLPSQ 305
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4PPV2 ((Putative methyltransferase Ppm1/Ppm2/Tcmp, S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:KAE9603573.1}))
HSP 1 Score: 366.696 bits (940), Expect = 1.316e-125
Identity = 185/299 (61.87%), Postives = 220/299 (73.58%), Query Frame = 0
Match: A0A6A4PPV2 ((Putative methyltransferase Ppm1/Ppm2/Tcmp, S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:KAE9603573.1}))
HSP 1 Score: 366.696 bits (940), Expect = 1.316e-125
Identity = 185/299 (61.87%), Postives = 220/299 (73.58%), Query Frame = 0
Query: 10 LPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGG-AAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILE---------------------------------GFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQ 271
LP WP P+L S+ +Q++HA IEK+WD L+RSACQTAAGRALWKHV HDPLAE+LAGE+YL +L+EKIKKD NA EISGVILAVRTLWFD+ +E A+ S G AQVVLLGAGMD RAYRLS LK+SDV+EVDF +VLQ+K TI+QAA S E QH+M AKSL RVA DI++++WLEKLQ++GF+P K TVW+LE GF+ VKLSQIGDPDA++GLL +PLNLFNKLRSLPR++QTHPDDGTPC RLYLV+ SGSP Q
Sbjct: 8 LPEYPTWPELKLPELLQSEVVQQVHATIEKEWDFLQRSACQTAAGRALWKHVTHDPLAELLAGESYLTNLHEKIKKDCLKNATEISGVILAVRTLWFDSRIEDALTSSNGREAQVVLLGAGMDTRAYRLSCLKDSDVFEVDFTQVLQVKTTILQAAKESAYESQHIMSKAKSLTRVAADIRENDWLEKLQVAGFLPNKNTVWVLEVVLADFMNKSSTTLSNSTFHFYSDWPDHLLPSIGFTHVKLSQIGDPDAHFGLLNEPLNLFNKLRSLPRSVQTHPDDGTPCCRLYLVEASGSPDQ 306
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B4S7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537628.1}))
HSP 1 Score: 366.696 bits (940), Expect = 4.813e-125
Identity = 195/329 (59.27%), Postives = 224/329 (68.09%), Query Frame = 0
Match: A0A5J5B4S7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537628.1}))
HSP 1 Score: 366.696 bits (940), Expect = 4.813e-125
Identity = 195/329 (59.27%), Postives = 224/329 (68.09%), Query Frame = 0
Query: 10 LPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
+P + WP PDL Y+DT++ELHA IEK+WDSL RSACQTAAGRALWKHV+HDPLAEVLAGETY+ SLY+KIKKD NNA+EISGVILAVRTLWFD+ LEAA+N+F GG AQVVLLGAGMDARAYRLS LKE++V+EVDF EVLQ K TI+QA+ ST E QHLM+ AKSL RVA DI+D +WLEKLQ+SGFVP+K TVW+LEG + D L +G D + DP LNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct: 23 MPEDRTWPELKLPDLLYTDTVRELHAAIEKEWDSLWRSACQTAAGRALWKHVVHDPLAEVLAGETYMRSLYDKIKKDRLNNAREISGVILAVRTLWFDSKLEAALNAFDGGEAQVVLLGAGMDARAYRLSCLKETNVFEVDFPEVLQTKTTILQASAESTNEHQHLMMTAKSLTRVAADIRDSDWLEKLQMSGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIADYCTLTHTVLLADFMNKPSTTLSNSMFHFYSDWPDHLLPSLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQKIP 351
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067HA75 ((Uncharacterized protein {ECO:0000313|EMBL:KDO84556.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.472e-124
Identity = 181/305 (59.34%), Postives = 224/305 (73.44%), Query Frame = 0
Match: A0A067HA75 ((Uncharacterized protein {ECO:0000313|EMBL:KDO84556.1}))
HSP 1 Score: 363.614 bits (932), Expect = 1.472e-124
Identity = 181/305 (59.34%), Postives = 224/305 (73.44%), Query Frame = 0
Query: 5 EPEPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSFGG-AAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILE---------------------------------GFSDVKLSQIGDPDANYGLLPDPLNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQV 272
+ E LP N +W L +DT++ LHA I+ WD L+R+ACQTAAGRA+WKHVIHDPLA++LAGETYL +++EKIKKD NNA+EISGVILA+RTLWFD+ +EAA+NSF AQVVLLGAGMD RAYRL+ LKESDV+EVDF++VLQ+K +IQ A+ E QH + AKSL VA DI++++WLEKLQ+SG+ P+K TVW+LE GFS+V+LSQIGDPDA++GL+ DPLNLFNKLRSLPR++QTHPDDGTPCRRLYLVQ SGSP+Q
Sbjct: 3 DQENGLPENPQWQELKLSQLLLTDTVRNLHATIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQASGSPNQT 307
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DR32 ((Uncharacterized protein {ECO:0000313|EMBL:THG05570.1}))
HSP 1 Score: 361.688 bits (927), Expect = 2.404e-123
Identity = 188/323 (58.20%), Postives = 220/323 (68.11%), Query Frame = 0
Match: A0A4S4DR32 ((Uncharacterized protein {ECO:0000313|EMBL:THG05570.1}))
HSP 1 Score: 361.688 bits (927), Expect = 2.404e-123
Identity = 188/323 (58.20%), Postives = 220/323 (68.11%), Query Frame = 0
Query: 16 WPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
WP PDL ++DT+Q++HA IE +WDSLR+SACQTAAGRALW HV+HDPLAE+ AGETYL SLY KIKKD NA+E+SGVILAVRT+WFD+ +EAA+NSF GGAAQVVLLGAGMDARAYRLS LKE+DV+EVDF EVLQMK TI+QAA ST +CQH + AKSLNRV DI+D++WL+KLQISGFVP+K TVW+LEG + D L +G D + + DP LNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q IP
Sbjct: 14 WPELKLPDLLFTDTVQQIHASIENEWDSLRQSACQTAAGRALWNHVVHDPLAELFAGETYLRSLYGKIKKDRLTNAREVSGVILAVRTMWFDSKIEAALNSFYGGAAQVVLLGAGMDARAYRLSCLKETDVFEVDFPEVLQMKTTILQAATESTNDCQHAKMTAKSLNRVEADIRDNDWLQKLQISGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIAANCTLTHTVLLADFMNKPSTTLSSSIFHFYSDWPDHLLPSLGFSDVSLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQAIP 336
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1E6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49648.1}))
HSP 1 Score: 357.066 bits (915), Expect = 1.189e-121
Identity = 193/332 (58.13%), Postives = 221/332 (66.57%), Query Frame = 0
Match: A0A5B7A1E6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49648.1}))
HSP 1 Score: 357.066 bits (915), Expect = 1.189e-121
Identity = 193/332 (58.13%), Postives = 221/332 (66.57%), Query Frame = 0
Query: 7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
E +P + WP PDL + T++ELHA IE +WD+LR+SACQTAAGRALWKHV+HDPLAE+LAGETYL SLY+KIK D NNA+E+SGVILAVRTLWFD+ LEAA+NSF GG AQVV LGAGMDARAYRLS LKES V+EVDF EVLQMK TI+QAA ST E Q L +AAKSL+RVA DI D++WLEKLQ+SGFVP+K TVW+LEG + D L +G D + DP LNLFNKLRSLPR+LQTHPDDGTPCRRLYLVQ SGSP Q IP
Sbjct: 5 ENGVPEDPTWPEFKLPDLLSTGTVRELHAAIENEWDTLRQSACQTAAGRALWKHVVHDPLAELLAGETYLRSLYDKIKTDRLNNAREVSGVILAVRTLWFDSKLEAALNSFDGGEAQVVFLGAGMDARAYRLSCLKESKVFEVDFPEVLQMKTTILQAAAESTNEHQSLTMAAKSLSRVAADITDNDWLEKLQLSGFVPEKNTVWVLEGILYYLSHSHAMEVLKIIADYCTLTRTVLLADFMNKPSTTLSDSIFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCRRLYLVQASGSPDQTIP 336
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZZ65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49647.1}))
HSP 1 Score: 353.214 bits (905), Expect = 5.299e-120
Identity = 192/332 (57.83%), Postives = 220/332 (66.27%), Query Frame = 0
Match: A0A5B6ZZ65 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49647.1}))
HSP 1 Score: 353.214 bits (905), Expect = 5.299e-120
Identity = 192/332 (57.83%), Postives = 220/332 (66.27%), Query Frame = 0
Query: 7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
E +P + WP PDL + T++ELHA IE +WD+LRRSACQTAAGRALWKHV+HDPLAE+LAGETYL SLY+KIK D NNA+E+SGVILAVRTLWFD+ LEAA+NSF GG AQVV LGAGMDARAYRLS LKES V+EVDF EVLQMK TI+QAA ST E Q L +AAKSL+RVA DI D++WLEKLQ+SGFVP+K TVW+LEG + D L +G D + DP LNLFNKLRSLPR+LQTHPDDGTPC RLYLVQ SGSP+Q P
Sbjct: 5 ENGVPEDPTWPEFKLPDLLSTGTVRELHAAIENEWDTLRRSACQTAAGRALWKHVVHDPLAELLAGETYLRSLYDKIKTDRLNNAREVSGVILAVRTLWFDSKLEAALNSFDGGEAQVVFLGAGMDARAYRLSCLKESKVFEVDFPEVLQMKTTILQAAAESTNEHQSLTMAAKSLSRVAADITDNDWLEKLQLSGFVPEKNTVWVLEGILYYLSHSQAMEILKIIADYCTLTHTVLLADFMNKPSTTLSDSIFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSLQTHPDDGTPCCRLYLVQASGSPNQKTP 336
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGR4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528647.1}))
HSP 1 Score: 351.288 bits (900), Expect = 2.228e-119
Identity = 188/332 (56.63%), Postives = 218/332 (65.66%), Query Frame = 0
Match: A0A5J5AGR4 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528647.1}))
HSP 1 Score: 351.288 bits (900), Expect = 2.228e-119
Identity = 188/332 (56.63%), Postives = 218/332 (65.66%), Query Frame = 0
Query: 7 EPCLPNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
E +P + WP P+L ++ T++ELHA IE +WD+LRRSACQTAAGRALWKHV+HDP+AE+LAGETYL S Y+KIKKD NNA+E+SGVILAVRTLWFD+ LE A+NSF GG AQVV LGAGMDARAYRLS LK+S V+EVDF EVLQMK TI+QAA ST E Q M+ AKSL+RVA DI+D++WLEKLQISGFVP+K TVWILEG + D L +G D + DP LNLFNKLRSLPR LQTHP+DG PC RLYLVQ SGSP Q IP
Sbjct: 5 ESGMPEDWTWPELKLPELLFTGTVRELHAAIENEWDTLRRSACQTAAGRALWKHVVHDPIAELLAGETYLRSFYDKIKKDRLNNAREVSGVILAVRTLWFDSKLEVALNSFDGGEAQVVFLGAGMDARAYRLSCLKDSKVFEVDFPEVLQMKTTILQAAAESTNEHQSPMMTAKSLSRVAADIRDNDWLEKLQISGFVPEKNTVWILEGILYYLSHSHAMEVLKIIADYCTLTRTVLLADFMNKPSTTLSNSVFHFYSDWPDHLLPPLGFSDVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRTLQTHPEDGKPCCRLYLVQASGSPDQTIP 336
BLAST of XM_017397980.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PZV1 ((S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:PSR99679.1}))
HSP 1 Score: 348.591 bits (893), Expect = 6.001e-118
Identity = 183/328 (55.79%), Postives = 215/328 (65.55%), Query Frame = 0
Match: A0A2R6PZV1 ((S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:PSR99679.1}))
HSP 1 Score: 348.591 bits (893), Expect = 6.001e-118
Identity = 183/328 (55.79%), Postives = 215/328 (65.55%), Query Frame = 0
Query: 11 PNNLEWPA---PDLPYSDTIQELHAVIEKDWDSLRRSACQTAAGRALWKHVIHDPLAEVLAGETYLNSLYEKIKKDTSNNAKEISGVILAVRTLWFDNNLEAAVNSF-GGAAQVVLLGAGMDARAYRLSFLKESDVYEVDFAEVLQMKNTIIQAAINSTTECQHLMVAAKSLNRVAGDIKDDNWLEKLQISGFVPQKKTVWILEG--------------------------------------------------FSDVKLSQIGDPDANYGLLPDP----------LNLFNKLRSLPRNLQTHPDDGTPCRRLYLVQGSGSPSQVIP 274
P WP PDL +DT+++LH IE +WDSLR+SACQTAAGRALWKHV HD LAE+LAGETYL SLYEKIKKD NA+E+SGV+LAVRTLWFD+ +EAA++SF GG AQVVLLGAGMDARAYRLS LKE+DV+EVDF EVLQMK T +QAA +S + QH+ V AKSLNRVA DI+D++WL+KLQISGFVP+K TVW+LEG + D L +G + + DP LNLFNKLRSLPR++QTHPDDGTPCRRLY VQ S SP Q P
Sbjct: 32 PEEWAWPELKLPDLLLTDTVRKLHEAIESEWDSLRQSACQTAAGRALWKHVTHDQLAELLAGETYLRSLYEKIKKDRCRNAREVSGVMLAVRTLWFDSKIEAALSSFDGGGAQVVLLGAGMDARAYRLSCLKETDVFEVDFPEVLQMKTTTLQAATDSINDNQHVRVIAKSLNRVAADIRDNDWLQKLQISGFVPEKNTVWVLEGILYYLSHSHAIEVLKIIADNRALTRTVLLADFMNKSSTTLSSSMFHFHSDWPDCLLPSLGFSEVKLSQIGDPDAHFGLLHDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYFVQASSSPHQTTP 359
| Match Name | Stats | Description |
|---|---|---|
| A0A4U5QEG1 | E-Value: 1.163e-129, PID: 63.61 | (Uncharacterized protein {ECO:0000313|EMBL:TKS0732... [more] |
| A0A2K2BPV8 | E-Value: 1.163e-129, PID: 63.61 | (Uncharacterized protein {ECO:0000313|EMBL:PNT5181... [more] |
| A0A6A4PPV2 | E-Value: 1.316e-125, PID: 61.87 | (Putative methyltransferase Ppm1/Ppm2/Tcmp, S-aden... [more] |
| A0A5J5B4S7 | E-Value: 4.813e-125, PID: 59.27 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more] |
| A0A067HA75 | E-Value: 1.472e-124, PID: 59.34 | (Uncharacterized protein {ECO:0000313|EMBL:KDO8455... [more] |
| A0A4S4DR32 | E-Value: 2.404e-123, PID: 58.20 | (Uncharacterized protein {ECO:0000313|EMBL:THG0557... [more] |
| A0A5B7A1E6 | E-Value: 1.189e-121, PID: 58.13 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4964... [more] |
| A0A5B6ZZ65 | E-Value: 5.299e-120, PID: 57.83 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4964... [more] |
| A0A5J5AGR4 | E-Value: 2.228e-119, PID: 56.63 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A2R6PZV1 | E-Value: 6.001e-118, PID: 55.79 | (S-adenosyl-L-methionine-dependent methyltransfera... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |