Resource Type:
Polypeptide
Name:
XM_017402399.1
Identifier:
XM_017402399.1-protein
Sequence:
MSSEGSDPPQPAPPSSPSETLDLLPIALLGTILTKLDIPSICSAASTCKS
FNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDD
SSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRW
RSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLE
IGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIG
TISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRS
QEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCT
SLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASN
RNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESV
MHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLL
LAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNC
GGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGE
ELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEIADEEMVDAADDVEA
Sequence Length:
649
Sequence Checksum:
34b555977fb0f8e4ff520f3f1627c34e
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017402399.1, derives from mRNA, XM_017402399.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R6Y8 ((F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS21780.1}))
HSP 1 Score: 944.495 bits (2440), Expect = 0.000e+0
Identity = 469/618 (75.89%), Postives = 545/618 (88.19%), Query Frame = 0
Match: A0A2R6R6Y8 ((F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS21780.1}))
HSP 1 Score: 944.495 bits (2440), Expect = 0.000e+0
Identity = 469/618 (75.89%), Postives = 545/618 (88.19%), Query Frame = 0
Query: 12 APPSSPSETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLL 629
A P S++L++LP+A+L TI+TKLD+PSICS ASTCK+F + AS ILSFLP+FHLLD+APSI LLRPLLP NP+L+TL +DC RLDDS++D L+RPSLR + LHNC+DFSG LLS++G RCK LRSL+LSSVA+KR RS+ VSDLE+LL GCT+LETL LMFDVS FLR NFARVW LA AK+T LEIGYISS+MVTELLSP +GP Q P++++ SILP+IHKL L+VDYITDTM+GTIS++L SL++LDLRDAPIIEP+V DLTNSGLQ INP+GKLKHLSLIRSQEFV T FKRVNDLG+LLMADRC SMESICLGGFCRVTDTGFKTILHSC+ LYKF+V++G+QLTDLVF DI ATSL+LTH SLRWCNLLTN + +RLASN +LS LDLRDCRNLGD SL+AIGTL KL+TLLLDGSDIS +GLSYLK+ V+ S++SLS+RGCKRLTDKCIS LF+GSS+ L+ELDLSNLPNLSD +LLLA+SRV + ELRMRQCPLIGDTSVMALASMQ D RGSSL+LLDL+NCGGIT ++F+WLKKPYFPRLRWLGVTG VNR+LVDALARSRPFL V+ GEELGT QWDNS++MY HDYEEVDELEQWLL
Sbjct: 2 ANPDPESQSLEILPMAVLATIMTKLDVPSICSVASTCKTFKACASHILSFLPNFHLLDIAPSIDLLRPLLP-RNPYLRTLKVDCKRLDDSAIDSLIRPSLRELCLHNCSDFSGRLLSEVGARCKGLRSLFLSSVAEKRGRSIHVSDLEELLNGCTELETLILMFDVSTFLRHNFARVWALACAKLTSLEIGYISSLMVTELLSPTVGPNQPPNNIKTSILPSIHKLCLSVDYITDTMVGTISRNLNSLSYLDLRDAPIIEPTVAFDLTNSGLQQINPNGKLKHLSLIRSQEFVTTCFKRVNDLGVLLMADRCSSMESICLGGFCRVTDTGFKTILHSCSKLYKFRVSHGTQLTDLVFLDISATSLSLTHASLRWCNLLTNHAIMRLASNMDLSSLDLRDCRNLGDESLRAIGTLPKLRTLLLDGSDISDLGLSYLKQRVISSLISLSIRGCKRLTDKCISSLFEGSSALILQELDLSNLPNLSDTGILLLARSRVPITELRMRQCPLIGDTSVMALASMQVHGDWCRGSSLRLLDLYNCGGITQLAFQWLKKPYFPRLRWLGVTGNVNRDLVDALARSRPFLHVACRGEELGTGQWDNSDEMYFHDYEEVDELEQWLL 618
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TUS1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_011088656.1}))
HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 462/644 (71.74%), Postives = 540/644 (83.85%), Query Frame = 0
Match: A0A6I9TUS1 ((F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:XP_011088656.1}))
HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 462/644 (71.74%), Postives = 540/644 (83.85%), Query Frame = 0
Query: 5 GSDPPQPAPPSSPSETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLDDDNEIADEEMVDAADDVE 648
S Q P+ + LD LP AL+ TI+TKLD+PSI S ASTC +F S A+ ILSF+P+FHLLD+APS+ LLRPLLPP+NP+L++L LDC RLDDSSLD LLRPSL+ + L NCADFSG LLS+LG CK LR LYLSSVA+KR RS+ V LE+LL+GC+ LETL LMFDVSIFLR NFARVW LAS+K+ LEIGYISSVMVTELLSP +GP QS +H + SILPNI KL L+VDYITDTM+ TISK L SLTHLDLRD+PI+EP + DLTN+GLQ IN HGKLKHL L+RSQE TYFKRVNDLGILLMAD+C +MESICLGGFC+VTDTG+KTILHSC+ LYK +V +G+ LTDLVFHDI ATSL+LTHVSLRWCNLLTNL+ RL SNR+L +LDLRDCRNLGD +L+AI TL KLKTLL+DG DIS VGLSYL + + +++ SLSVRGCKRLTD+CIS LFDG+S+RELRELDLSNLPNLSDA VLLLAKSR+ + ELR+RQCPLIGDTSVMALASMQ D++ RGSSL+LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG VNR++VDAL RSRP L V+ GEELGT+QWDN +D Y DYEEVDELEQWLL ++ +++D+EM DA D E
Sbjct: 2 ASPSAQTREPNPGNPGLDHLPSALIATIMTKLDVPSILSLASTCMTFRSCAAHILSFIPNFHLLDIAPSMDLLRPLLPPDNPYLRSLKLDCTRLDDSSLDFLLRPSLQELCLRNCADFSGKLLSKLGHSCKDLRFLYLSSVAEKRGRSVDVLHLEELLSGCSHLETLILMFDVSIFLRHNFARVWSLASSKLISLEIGYISSVMVTELLSPAVGPHQSSNHPRPSILPNIQKLCLSVDYITDTMVSTISKCLTSLTHLDLRDSPIMEPRMAFDLTNNGLQQINAHGKLKHLCLVRSQEIAPTYFKRVNDLGILLMADKCSAMESICLGGFCQVTDTGYKTILHSCSKLYKLRVFHGTHLTDLVFHDIAATSLSLTHVSLRWCNLLTNLAVSRLTSNRDLCMLDLRDCRNLGDEALRAINTLPKLKTLLMDGCDISDVGLSYLSKGLTNTLASLSVRGCKRLTDRCISFLFDGNSNRELRELDLSNLPNLSDAGVLLLAKSRIAIAELRLRQCPLIGDTSVMALASMQVDENMCRGSSLRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDIVDALTRSRPHLHVATRGEELGTDQWDNLDDFYAQDYEEVDELEQWLLGEE-DMSDDEMEDALDMAE 644
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BCD0 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646} (Fragment))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 480/635 (75.59%), Postives = 548/635 (86.30%), Query Frame = 0
Match: A0A5B7BCD0 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646} (Fragment))
HSP 1 Score: 913.294 bits (2359), Expect = 0.000e+0
Identity = 480/635 (75.59%), Postives = 548/635 (86.30%), Query Frame = 0
Query: 4 EGSDPPQPAPPS--------SPSETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWLLD 630
EG + A P+ + S +L+LLP ALL TI+TKLDIPSICS ASTCK+FN+ AS ILSFLP FHLLD++P I L LL P NP+L++L +DC +LDDS++D LLRPSL + LHNCADFSG LLS++G RCK LRSLYLS+VA+ R RS+ VSDLE+LL+GCT+LETL LMFD SIFLR NFARVW LASAK+T LEIGYISSVMVTELLSP +GP Q +H++ SILP+I KL L+VDYITDTM+ TISK+L SLTHLDL+DAPIIEP+VT DLTNSGLQ INPHGKLKHLSL+RSQEFVATYFKRVNDLG LLMADRC SMESICLGGF RVTDTGFKT+LHSC+SLYK KV++G+QLTDLVFHDI ATSL+LTHVSLRWCNLLTN + +RLASN +LSVLDLRDCRNLGD +L AIGTL KLKTLLLDGSDIS VGLSYLK+ V+ S+VSLSVRGCKRLTDKCIS LFDGSS+ EL+ELDLSNLPNLSDA VLLLAK+RV ++ELRMRQCPLIGDTSVMALASMQ D D+WRGS+L+LLDL+NCGGIT ++FRWLKKPYFPRLRWLGVTG N +V LARSRPFL V+ GEELGT+QWDNS+D+YMHDYEEVDELEQWLL+
Sbjct: 22 EGERERERAKPARGRMANSETNSHSLELLPSALLATIMTKLDIPSICSIASTCKTFNTCASQILSFLPSFHLLDISPPI-DLLTLLLPPNPYLRSLKVDCTQLDDSAIDYLLRPSLHELCLHNCADFSGKLLSEVGGRCKDLRSLYLSTVAETRGRSIHVSDLEELLSGCTELETLILMFDFSIFLRHNFARVWALASAKLTSLEIGYISSVMVTELLSPTVGPHQPSNHIRQSILPSIRKLCLSVDYITDTMVSTISKNLNSLTHLDLQDAPIIEPTVTFDLTNSGLQQINPHGKLKHLSLVRSQEFVATYFKRVNDLGFLLMADRCSSMESICLGGFSRVTDTGFKTVLHSCSSLYKLKVSHGTQLTDLVFHDISATSLSLTHVSLRWCNLLTNHAVMRLASNLDLSVLDLRDCRNLGDEALGAIGTLPKLKTLLLDGSDISDVGLSYLKQGVISSLVSLSVRGCKRLTDKCISFLFDGSSTLELQELDLSNLPNLSDAGVLLLAKNRVPIIELRMRQCPLIGDTSVMALASMQVDGDSWRGSTLRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSGNLYMVHVLARSRPFLHVACRGEELGTDQWDNSDDLYMHDYEEVDELEQWLLE 655
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2E5P7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 448/610 (73.44%), Postives = 521/610 (85.41%), Query Frame = 0
Match: A0A5D2E5P7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 448/610 (73.44%), Postives = 521/610 (85.41%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL TI+TKLDI SICS A TC++FNS AS ILSFLP+FH+LD++PS+ L++PLLPPN+ HLQ+L LDC +L+DSS++ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS +T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GSSL+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATIMTKLDISSICSLAVTCRAFNSCASHILSFLPNFHILDISPSMELIKPLLPPNS-HLQSLKLDCGQLNDSSIELLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKMLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLTLLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTRLKVLDLRGCKNLGDEALPAIGSLCELKMLQLDNSDISDVGIAYLRHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSSLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2S972 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Match: A0A5D2S972 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL T++TKLDI SICS A TCK+FNS AS ILSFLP+FH+LD++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS+ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATVMTKLDISSICSLAVTCKAFNSCASHILSFLPNFHILDISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIQLLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2WRE3 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 448/610 (73.44%), Postives = 520/610 (85.25%), Query Frame = 0
Match: A0A5D2WRE3 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 448/610 (73.44%), Postives = 520/610 (85.25%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL TI+TKLDI SICS A TC++FNS AS ILSFLP+FH+LD++PS+ L++PLLPPN+ HLQ+L LDC +L+DSS++ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS +T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF+ TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GSSL+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATIMTKLDISSICSLAVTCRAFNSCASHILSFLPNFHILDISPSMELIKPLLPPNS-HLQSLKLDCGQLNDSSIELLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIYISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKMLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLTLLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLITYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTRLKVLDLRGCKNLGDEALPAIGSLCELKMLQLDNSDISDVGIAYLRHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSSLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2A5X6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Match: A0A5D2A5X6 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL T++TKLDI SICS A TCK+FNS AS ILSFLP+FH+LD++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS+ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATVMTKLDISSICSLAVTCKAFNSCASHILSFLPNFHILDISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIQLLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5NWH7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Match: A0A5J5NWH7 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL T++TKLDI SICS A TCK+FNS AS ILSFLP+FH+LD++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS+ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATVMTKLDISSICSLAVTCKAFNSCASHILSFLPNFHILDISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIQLLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J9JID2 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 522/610 (85.57%), Query Frame = 0
Match: A0A7J9JID2 (F-box domain-containing protein {ECO:0000259|PROSITE:PS50181})
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 522/610 (85.57%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL TI+TKLDI SICS A TC++FNS AS ILSFLP+FH+LD++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS++ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATIMTKLDISSICSLAVTCRAFNSCASHILSFLPNFHILDISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIELLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
BLAST of XM_017402399.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8N628 ((F-box/LRR-repeat protein 10-like {ECO:0000313|RefSeq:XP_016734420.1}))
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Match: A0A1U8N628 ((F-box/LRR-repeat protein 10-like {ECO:0000313|RefSeq:XP_016734420.1}))
HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 447/610 (73.28%), Postives = 521/610 (85.41%), Query Frame = 0
Query: 19 ETLDLLPIALLGTILTKLDIPSICSAASTCKSFNSSASTILSFLPHFHLLDVAPSIGLLRPLLPPNNPHLQTLHLDCARLDDSSLDCLLRPSLRHVSLHNCADFSGSLLSQLGIRCKLLRSLYLSSVADKRWRSMCVSDLEQLLTGCTQLETLSLMFDVSIFLRPNFARVWPLASAKITCLEIGYISSVMVTELLSPILGPQQSPSHMQCSILPNIHKLWLAVDYITDTMIGTISKSLVSLTHLDLRDAPIIEPSVTIDLTNSGLQLINPHGKLKHLSLIRSQEFVATYFKRVNDLGILLMADRCESMESICLGGFCRVTDTGFKTILHSCTSLYKFKVTYGSQLTDLVFHDIDATSLALTHVSLRWCNLLTNLSFVRLASNRNLSVLDLRDCRNLGDSSLKAIGTLHKLKTLLLDGSDISCVGLSYLKESVMHSIVSLSVRGCKRLTDKCISILFDGSSSRELRELDLSNLPNLSDATVLLLAKSRVQLVELRMRQCPLIGDTSVMALASMQADDDTWRGSSLQLLDLFNCGGITPISFRWLKKPYFPRLRWLGVTGLVNRELVDALARSRPFLRVSYCGEELGTNQWDNSNDMYMHDYEEVDELEQWL 628
E LD LP ALL T++TKLDI SICS A TCK+FNS AS ILSFLP+FH+LD++PS+ L++ LLPPN+ HLQ+L LDC +L+DSS+ LLRPSL+ + HNCADFSG LLS++G RCK +RSLYL SVA+KR R++ +SDLE+LL GCTQLE L+LMFD+S+FLR NFARVW LAS K+T LEIGYISSVMVTELLSP +GP Q P+ ++ SILP I KL LAVDYITDTM+GTISK L LTHL+LRDAP+IEP VT DLTNSGLQ IN HG+LKHLSL+RSQEF++TYFKRVNDLGILLMAD+C +MESICLGGFCRVTDTGFKTILHSC+SLYK KV +GSQLTDLVFHDI ATSL+LTHVS RWCNLLTN + L N +L VLDLR C+NLGD +L AIG+L +LK L LD SDIS VG++YL+ ++ S+VSLSVRGCK+LTDKCIS+LFDGSS EL+ELDLSNLPNLSD VL LAKSRV + ELRMRQCPLIGDTS+MALASMQADDD GS+L+LLDL+NCGGIT +SFRWLKKPYFPRLRWLGVTG VNR++VDALAR+RPFL V+ GEELGT+ W+N + YMHDYEE+DELEQWL
Sbjct: 7 ERLDQLPTALLATVMTKLDISSICSLAVTCKAFNSCASHILSFLPNFHILDISPSMELIKSLLPPNS-HLQSLKLDCGQLNDSSIQLLLRPSLQELCFHNCADFSGKLLSEIGSRCKDVRSLYLGSVAEKRGRAIHISDLEELLGGCTQLEELNLMFDLSLFLRHNFARVWALASKKLTSLEIGYISSVMVTELLSPNVGPHQYPNQIRPSILPAIQKLSLAVDYITDTMVGTISKGLALLTHLELRDAPLIEPRVTFDLTNSGLQQINQHGRLKHLSLVRSQEFLSTYFKRVNDLGILLMADKCANMESICLGGFCRVTDTGFKTILHSCSSLYKLKVCHGSQLTDLVFHDIAATSLSLTHVSFRWCNLLTNHAIKSLVRNTHLKVLDLRGCKNLGDEALAAIGSLCELKMLQLDNSDISDVGIAYLQHGIISSLVSLSVRGCKKLTDKCISVLFDGSSKLELQELDLSNLPNLSDNGVLALAKSRVPISELRMRQCPLIGDTSIMALASMQADDDRGHGSNLRLLDLYNCGGITQLSFRWLKKPYFPRLRWLGVTGSVNRDIVDALARNRPFLHVACHGEELGTDPWNNIDSSYMHDYEELDELEQWL 615
| Match Name | Stats | Description |
|---|---|---|
| A0A2R6R6Y8 | E-Value: 0.000e+0, PID: 75.89 | (F-box/LRR-repeat protein {ECO:0000313|EMBL:PSS217... [more] |
| A0A6I9TUS1 | E-Value: 0.000e+0, PID: 71.74 | (F-box/LRR-repeat protein 10 {ECO:0000313|RefSeq:X... [more] |
| A0A5B7BCD0 | E-Value: 0.000e+0, PID: 75.59 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5D2E5P7 | E-Value: 0.000e+0, PID: 73.44 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5D2S972 | E-Value: 0.000e+0, PID: 73.28 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5D2WRE3 | E-Value: 0.000e+0, PID: 73.44 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5D2A5X6 | E-Value: 0.000e+0, PID: 73.28 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A5J5NWH7 | E-Value: 0.000e+0, PID: 73.28 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A7J9JID2 | E-Value: 0.000e+0, PID: 73.28 | F-box domain-containing protein {ECO:0000259|PROSI... [more] |
| A0A1U8N628 | E-Value: 0.000e+0, PID: 73.28 | (F-box/LRR-repeat protein 10-like {ECO:0000313|Ref... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |