Resource Type:
Polypeptide
Name:
XM_017400336.1
Identifier:
XM_017400336.1-protein
Sequence:
MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLML
NMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCF
IIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKI
DPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAIT
ENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIK
WFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANGKEKLEKIKNEL
FEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKV
TGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTT
SEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHA
LFVTEVSSYIYFSLNYYCMHYKLIR
Sequence Length:
475
Sequence Checksum:
60bc80c4129125cb34ba75428a3d7413
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017400336.1, derives from mRNA, XM_017400336.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q2VEW7 ((Putative carotenoid cleavage dioxygenase {ECO:0000313|EMBL:ABB52081.1}))
HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 387/457 (84.68%), Postives = 409/457 (89.50%), Query Frame = 0
Match: Q2VEW7 ((Putative carotenoid cleavage dioxygenase {ECO:0000313|EMBL:ABB52081.1}))
HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 387/457 (84.68%), Postives = 409/457 (89.50%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGLRIKDGKATYV RYVRT+RLKQEET GGAKFMKIGDLKGLFGLLM+NMQMLR KLNVLDMSYG GTANTAMIYHHG+LLALSE DKP AIKVLEDGDLQTLGL+DYDKRLTH FTAHPK+DP+TGEMFTFGY+HTPP++TYRVISKDG MNDPVPITLADP+MMHDFAITENYAIIMDLPLYF+PKEMVKE KLIFTFD +KKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCR ENPDL+M NG KEKLE NEL+EMRFNMKSGLASQKKLSASAVDFP+INESYTGRKQRYVY T LD+ KVTGIVKFDLHMEPE+GKK+LEVGGN+QGIFDLGVGR+GSEAIFVPR+PGTTSEEDDGYLIHFLHDE+TGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHA FVTE
Sbjct: 108 MIHGLRIKDGKATYVSRYVRTSRLKQEETFGGAKFMKIGDLKGLFGLLMVNMQMLRGKLNVLDMSYGNGTANTAMIYHHGRLLALSEADKPY--------------------------AIKVLEDGDLQTLGLLDYDKRLTHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMNDPVPITLADPIMMHDFAITENYAIIMDLPLYFKPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGSMKEKLENFNNELYEMRFNMKSGLASQKKLSASAVDFPRINESYTGRKQRYVYATSLDSIAKVTGIVKFDLHMEPEIGKKKLEVGGNIQGIFDLGVGRFGSEAIFVPRQPGTTSEEDDGYLIHFLHDESTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHAFFVTE 538
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C3Z7 ((Putative carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:MPA75404.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 361/457 (78.99%), Postives = 395/457 (86.43%), Query Frame = 0
Match: A0A5B7C3Z7 ((Putative carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:MPA75404.1}))
HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 361/457 (78.99%), Postives = 395/457 (86.43%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
M+HG+RIKDGKATYV RYVRT+RLKQEE GGAKFMKIGDLKGLFGLLM+NMQMLR KL VLD+SYG T NTA+IYHHGKLLALSE DKP +KVLEDGDLQTLG++DYDKRL H FTAHPK+DP+TGEMFTFGY+HTPP++TYRVISKDG M+DPVPIT++DP+MMHDFAITENYAI MDLPLYFRPKEMVKE KLIFTFD +KKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEGDEVVL+TCR ENPDL+M NG KEKLE KN+L+EMRFNMK+GLASQK+LSASAVDFP++NESYTGRKQR+VYGTILD+ KVTGI+KFDLH EPE GK +LEVGGNVQGIFDLG GR+GSEAIFVPREPG TSEEDDGYLI F HDE TGKSA N+IDAKTMS DPVAVVELPHRVPYGFHA FVTE
Sbjct: 95 MVHGIRIKDGKATYVSRYVRTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGTATGNTALIYHHGKLLALSEADKPY--------------------------VLKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMHDPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGDEVVLMTCRLENPDLDMVNGIVKEKLENFKNQLYEMRFNMKTGLASQKELSASAVDFPRVNESYTGRKQRFVYGTILDSIAKVTGIIKFDLHAEPETGKTKLEVGGNVQGIFDLGAGRFGSEAIFVPREPGITSEEDDGYLIFFAHDEKTGKSAVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE 525
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZQG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520239.1}))
HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 359/457 (78.56%), Postives = 396/457 (86.65%), Query Frame = 0
Match: A0A5J4ZQG1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8520239.1}))
HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 359/457 (78.56%), Postives = 396/457 (86.65%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHG+RIKDGKATYV RYVRT+RLKQEE GG+KFMK+GDLKGLFGLLM+NMQMLR KL VLD+SYG GT NTA+IYHHGKLLALSE DKP A+KVLEDGDLQTLG++DYDKRL H FTAHPK+DP+TGEMFTFGY+HTPP++TYRVISKDG M+DPVPIT++DP+MMHDFAITENYAI MDLPLYFRPKEMVKE KLIFTFD +KKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEGDEVVLITCR E+PDL+M NG KEKLE KN+L+EMRFNMK+GLASQK+LSASAVDFP++NESYTGRKQR+VYGTILD+ KVTGI+KFDLH EP+ GK +LEVGGNVQGIFDLG GR+GSEAIFVPREPG TSEEDDGYLI F HDE TGKSA +IDAKTMS DPVA+VELPHRVPYGFHA FVTE
Sbjct: 102 MIHGIRIKDGKATYVSRYVRTSRLKQEEYFGGSKFMKVGDLKGLFGLLMVNMQMLRAKLKVLDVSYGTGTGNTALIYHHGKLLALSEADKPY--------------------------ALKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGVMHDPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDPTKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLEDPDLDMVNGVVKEKLENFKNQLYEMRFNMKTGLASQKELSASAVDFPRVNESYTGRKQRFVYGTILDSIAKVTGIIKFDLHAEPQTGKTKLEVGGNVQGIFDLGAGRFGSEAIFVPREPGITSEEDDGYLIFFGHDEKTGKSAVTVIDAKTMSADPVAIVELPHRVPYGFHAFFVTE 532
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7YU16 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_010241258.1}))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 359/457 (78.56%), Postives = 397/457 (86.87%), Query Frame = 0
Match: A0A1U7YU16 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_010241258.1}))
HSP 1 Score: 744.962 bits (1922), Expect = 0.000e+0
Identity = 359/457 (78.56%), Postives = 397/457 (86.87%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHG+RIKDGKATYV RYVRT+RLKQEE GGAKFMKIGDLKGLFGLLM+N+Q+LR KL VLD+SYG GTANTA+IYHHGKLLALSE DKP AIKVLEDGDLQTLG++DYDKRL H FTAHPK+DP+TGEM+TFGY+H PP+VTYRVISKDGFM+DPVPIT++DPVMMHDFAITENYAI MDLPLYFRPKEMVK NKLIF+FD +KKARFG+LPRYAK+ELLIKWFELPNCFIFHNANAWEE DE+VLITCR ENPDL+M +G KEKLE NEL+EMRFNMK+GLASQ+KLSASAVDFP+INE+YTGRKQR+VYGTILD+ KVTGIVKFDLH +PE + +LEVGGNVQGIFDLG GR+GSEAIFVPREPG +SEEDDGYLI F+HDENTGKSA N+IDAKTMS DPVAVVELPHRVPYGFHA FVTE
Sbjct: 104 MIHGMRIKDGKATYVSRYVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNIQLLRNKLKVLDVSYGNGTANTALIYHHGKLLALSEADKPY--------------------------AIKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMYTFGYSHDPPYVTYRVISKDGFMHDPVPITISDPVMMHDFAITENYAIFMDLPLYFRPKEMVKGNKLIFSFDDTKKARFGILPRYAKDELLIKWFELPNCFIFHNANAWEEEDEIVLITCRLENPDLDMVSGTVKEKLENFNNELYEMRFNMKTGLASQRKLSASAVDFPRINENYTGRKQRFVYGTILDSIAKVTGIVKFDLHAQPEKDRTKLEVGGNVQGIFDLGPGRFGSEAIFVPREPGISSEEDDGYLIFFVHDENTGKSAVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTE 534
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7T313 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94679.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 353/457 (77.24%), Postives = 395/457 (86.43%), Query Frame = 0
Match: D7T313 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94679.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 353/457 (77.24%), Postives = 395/457 (86.43%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGL IKDGKATYV RYVRT+RLKQEE GGAKFM+IGDLKGLFGLLM+NMQMLR KL +LD+SYG GT NTA++YHHGKLLALSE DKP +KVLEDGDLQTLG++DYDKRLTH FTAHPK+DP+TGEMF+FGY+HTPP++TYRVISKDGFM++PVPIT++DP+MMHDFAITENYAI MDLPLYFRPKEMVKE KLIFTFD +KKARFGVLPRYAKNEL IKWFELPNCFIFHNANAWEE DEVVLITCR ENPDL++ G KEKLE NEL+EMRFNMK+G+ASQ+KLSAS+VDFP++NESYTGRKQRYVYGTILD+ KVTGI+KFDLH EP+ GK +LEVGGNVQGIFDLGVGR+GSEA+FVPREPG TSEEDDGYLI F+HDE TGKS N+IDAKTMSPDP+A+VELP+RVPYGFHA FVTE
Sbjct: 107 MIHGLHIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVYHHGKLLALSEADKPY--------------------------VLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPPYITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEEDDGYLIFFIHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTE 537
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TSF5 ((LOW QUALITY PROTEIN: carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_011087743.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 397/457 (86.87%), Query Frame = 0
Match: A0A6I9TSF5 ((LOW QUALITY PROTEIN: carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_011087743.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 397/457 (86.87%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGLRIKDGKATYV R+V+T+RLKQE+ GG+KFMK+GDLKG+FGL+M+NMQMLR KL VLD+SYG GTANTA+IYHHGKLLALSE DKP AIKVLEDGDLQT+G++DYDKRL H FTAHPK+DP+TGEMFTFGY+HTPP++TYRVISK+G M DPVPIT+ADP+MMHDFAITENYA+ MDLPLYFRPKEMVK+NK IF+FD +KKARFG+LPRYAKNELLI+WFELPNC+IFHNANAWEEGDEVVLITCR +NPDL+M NG KEKLE NEL+EMRFN+KSGLASQK+LS SAVDFP++NES+TGRKQRYVYGTILD+ KVTGI+KFDLH EPE GK++LEVGGNV GIFDLG GR+GSEAIFVPR+PGTTSEEDDGYLI F+HDENTGKSA N+IDAKTMS DPVAVVELP RVPYGFHA FVTE
Sbjct: 108 MIHGLRIKDGKATYVSRFVKTSRLKQEDFYGGSKFMKVGDLKGMFGLIMVNMQMLRAKLKVLDVSYGVGTANTALIYHHGKLLALSEADKPY--------------------------AIKVLEDGDLQTIGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKEGVMQDPVPITVADPIMMHDFAITENYAVFMDLPLYFRPKEMVKDNKFIFSFDPTKKARFGILPRYAKNELLIRWFELPNCYIFHNANAWEEGDEVVLITCRLQNPDLDMVNGSVKEKLENFTNELYEMRFNLKSGLASQKRLSVSAVDFPRVNESFTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKEKLEVGGNVIGIFDLGPGRFGSEAIFVPRQPGTTSEEDDGYLIFFVHDENTGKSAVNVIDAKTMSADPVAVVELPKRVPYGFHAFFVTE 538
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4HK91 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_018856581.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 357/457 (78.12%), Postives = 394/457 (86.21%), Query Frame = 0
Match: A0A2I4HK91 ((carotenoid 9,10(9',10')-cleavage dioxygenase 1 {ECO:0000313|RefSeq:XP_018856581.1}))
HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 357/457 (78.12%), Postives = 394/457 (86.21%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
M+HGLRIKDGKATYV RYVRT+RLKQEE GGAKFMKIGDLKGLFGLLM+NMQMLR KL VLD+SYG GT NTA+IYHHGKLLALSE DKP +KVLEDGDLQTLG++DYDKRLTH FTAHPK+DP+TGEMFTFGYAHTPP++TYRVISKDGFM+DPVPIT+ DP+MMHDFAITENYAI MDLPLYFRPKEMVKENKLIFTFD +KKARFGVLPRYAK+ELLIKWFELPNCFIFHNANAWEE DEVV+ITCR ENP+L+M +G KE LE NEL+EMRFNMK+GLASQKKLSASAVDFP++NESYTGR+Q+YVYGTILDN KV GI+KFDLH EPE GK +LEVGGNV+GI+DLG R+GSEAIFVPR PG TSEEDDGYLI F+HDENTGKS+ ++IDAKTMS DP+AVVELPHRVPYGFHA FVTE
Sbjct: 106 MVHGLRIKDGKATYVSRYVRTSRLKQEEYFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGTGTGNTALIYHHGKLLALSEADKPY--------------------------VLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITVPDPIMMHDFAITENYAIFMDLPLYFRPKEMVKENKLIFTFDATKKARFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEEDEVVMITCRLENPNLDMVSGTIKENLENFCNELYEMRFNMKTGLASQKKLSASAVDFPRVNESYTGRRQQYVYGTILDNITKVKGIIKFDLHAEPETGKTKLEVGGNVKGIYDLGPSRFGSEAIFVPRLPGITSEEDDGYLIFFVHDENTGKSSVHVIDAKTMSADPIAVVELPHRVPYGFHAFFVTE 536
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: Q3T4H1 ((9,10[9',10']carotenoid cleavage dioxygenase {ECO:0000313|EMBL:AAX48772.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 395/457 (86.43%), Query Frame = 0
Match: Q3T4H1 ((9,10[9',10']carotenoid cleavage dioxygenase {ECO:0000313|EMBL:AAX48772.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 395/457 (86.43%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGL IKDGKATYV RYVRT+RLKQEE GGAKFM+IGDLKGLFGLLM+NMQMLR KL +LD+SYG GT NTA+++HHGKLLALSE DKP +KVLEDGDLQTLG++DYDKRLTH FTAHPK+DP+TGEMF+FGY+HTPP++TYRVISKDGFM++PVPIT++DP+MMHDFAITENYAI MDLPLYFRPKEMVKE KLIFTFD +KKARFGVLPRYAKNEL IKWFELPNCFIFHNANAWEE DEVVLITCR ENPDL++ G KEKLE NEL+EMRFNMK+G+ASQ+KLSAS+VDFP++NESYTGRKQRYVYGTILD+ KVTGI+KFDLH EP+ GK +LEVGGNVQGIFDLGVGR+GSEA+FVPREPG TSEEDDGYLI F+HDE TGKS N+IDAKTMSPDP+A+VELP+RVPYGFHA FVTE
Sbjct: 103 MIHGLHIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVFHHGKLLALSEADKPY--------------------------VLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPPYITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEEDDGYLIFFVHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTE 533
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: I2E7N9 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94677.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 395/457 (86.43%), Query Frame = 0
Match: I2E7N9 ((Carotenoid cleavage dioxygenase 1 {ECO:0000313|EMBL:AFJ94677.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 352/457 (77.02%), Postives = 395/457 (86.43%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGL IKDGKATYV RYVRT+RLKQEE GGAKFM+IGDLKGLFGLLM+NMQMLR KL +LD+SYG GT NTA+++HHGKLLALSE DKP +KVLEDGDLQTLG++DYDKRLTH FTAHPK+DP+TGEMF+FGY+HTPP++TYRVISKDGFM++PVPIT++DP+MMHDFAITENYAI MDLPLYFRPKEMVKE KLIFTFD +KKARFGVLPRYAKNEL IKWFELPNCFIFHNANAWEE DEVVLITCR ENPDL++ G KEKLE NEL+EMRFNMK+G+ASQ+KLSAS+VDFP++NESYTGRKQRYVYGTILD+ KVTGI+KFDLH EP+ GK +LEVGGNVQGIFDLGVGR+GSEA+FVPREPG TSEEDDGYLI F+HDE TGKS N+IDAKTMSPDP+A+VELP+RVPYGFHA FVTE
Sbjct: 107 MIHGLHIKDGKATYVSRYVRTSRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVFHHGKLLALSEADKPY--------------------------VLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPPYITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFTFDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAWEEEDEVVLITCRLENPDLDLVGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEEDDGYLIFFVHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTE 537
BLAST of XM_017400336.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1L5JJ07 ((Carotenoid cleavage dioxygenase {ECO:0000313|EMBL:APO15143.1}))
HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 356/457 (77.90%), Postives = 393/457 (86.00%), Query Frame = 0
Match: A0A1L5JJ07 ((Carotenoid cleavage dioxygenase {ECO:0000313|EMBL:APO15143.1}))
HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 356/457 (77.90%), Postives = 393/457 (86.00%), Query Frame = 0
Query: 1 MIHGLRIKDGKATYVCRYVRTARLKQEETLGGAKFMKIGDLKGLFGLLMLNMQMLRRKLNVLDMSYGYGTANTAMIYHHGKLLALSEVDKPCKLSAGLCFIIRRICRTRVTYHLLSADAIKVLEDGDLQTLGLVDYDKRLTHPFTAHPKIDPYTGEMFTFGYAHTPPFVTYRVISKDGFMNDPVPITLADPVMMHDFAITENYAIIMDLPLYFRPKEMVKENKLIFTFDGSKKARFGVLPRYAKNELLIKWFELPNCFIFHNANAWEEGDEVVLITCRSENPDLNMANG--KEKLEKIKNELFEMRFNMKSGLASQKKLSASAVDFPKINESYTGRKQRYVYGTILDNNGKVTGIVKFDLHMEPEMGKKELEVGGNVQGIFDLGVGRYGSEAIFVPREPGTTSEEDDGYLIHFLHDENTGKSAANIIDAKTMSPDPVAVVELPHRVPYGFHALFVTE 455
MIHGLRIKDGKATYV RYVRT+RLKQEE GG+KFMKIGDLKG FGLLM+NMQMLR KL VLD+SYG GT NTA+IYHHGKLLALSE DKP A+KVLEDGDLQTLG++DYDKRL H FTAHPK+DP+TGEMFTFGY+HTPP++TYRVISKDGFM+DPVPIT+ +P+MMHDFAITENYAI MDLPL+F+PKEMVKENKLIFTFD +KKA FGVLPRYAK+ELLIKWFELPNCFIFHNANAWEEGDEVVLITCR ENPDL+M NG KEKLE NEL+EMRFNMK+GLASQ+KLSA AVDFP++NESYTGRKQR+VY T LD+ KVTGI+KFDLH EPE GK +LEVGGN+QGIFDLG R+GSEAIFVPR+PG TSEEDDGYLI F+HDE TGKSA N+IDAK+MS DPVAVVELPHRVPYGFHALFVTE
Sbjct: 107 MIHGLRIKDGKATYVSRYVRTSRLKQEEFFGGSKFMKIGDLKGFFGLLMVNMQMLRAKLKVLDVSYGTGTGNTALIYHHGKLLALSEADKPY--------------------------ALKVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGFMHDPVPITIPEPIMMHDFAITENYAIFMDLPLFFKPKEMVKENKLIFTFDATKKACFGVLPRYAKDELLIKWFELPNCFIFHNANAWEEGDEVVLITCRLENPDLDMVNGPVKEKLENFGNELYEMRFNMKTGLASQRKLSAPAVDFPRVNESYTGRKQRFVYATTLDSIAKVTGIIKFDLHAEPESGKTKLEVGGNIQGIFDLGPHRFGSEAIFVPRDPGVTSEEDDGYLIFFVHDEVTGKSAVNVIDAKSMSADPVAVVELPHRVPYGFHALFVTE 537
| Match Name | Stats | Description |
|---|---|---|
| Q2VEW7 | E-Value: 0.000e+0, PID: 84.68 | (Putative carotenoid cleavage dioxygenase {ECO:000... [more] |
| A0A5B7C3Z7 | E-Value: 0.000e+0, PID: 78.99 | (Putative carotenoid cleavage dioxygenase 1 {ECO:0... [more] |
| A0A5J4ZQG1 | E-Value: 0.000e+0, PID: 78.56 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8520... [more] |
| A0A1U7YU16 | E-Value: 0.000e+0, PID: 78.56 | (carotenoid 9,10(9',10')-cleavage dioxygenase 1 {E... [more] |
| D7T313 | E-Value: 0.000e+0, PID: 77.24 | (Carotenoid cleavage dioxygenase 1 {ECO:0000313|EM... [more] |
| A0A6I9TSF5 | E-Value: 0.000e+0, PID: 77.02 | (LOW QUALITY PROTEIN: carotenoid 9,10(9',10')-clea... [more] |
| A0A2I4HK91 | E-Value: 0.000e+0, PID: 78.12 | (carotenoid 9,10(9',10')-cleavage dioxygenase 1 {E... [more] |
| Q3T4H1 | E-Value: 0.000e+0, PID: 77.02 | (9,10[9',10']carotenoid cleavage dioxygenase {ECO:... [more] |
| I2E7N9 | E-Value: 0.000e+0, PID: 77.02 | (Carotenoid cleavage dioxygenase 1 {ECO:0000313|EM... [more] |
| A0A1L5JJ07 | E-Value: 0.000e+0, PID: 77.90 | (Carotenoid cleavage dioxygenase {ECO:0000313|EMBL... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |