XM_017402873.1

Resource Type: 
Polypeptide
Name: 
XM_017402873.1
Identifier: 
XM_017402873.1-protein
Sequence: 
MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEK
VAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFK
DIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHR
DLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPEL
CGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSP
STDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFD
PKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRA
IIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSG
PVTDRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSI
PGNLPKASRPPPRIPTGRGSGPVLPYESSSRNVMGTYVHNSVPQSLSPNY
TFRTNTRDVEKLTKEDKVDSSLVKHAVPQSAEGKVSPGIAPDMNSNPYQQ
GQSSQFSDPMQIDSKLLQVQSQLGAVGAGAVNFTTRS
Sequence Length: 
587
Sequence Checksum: 
aac1109c4dc38d2ed290c2376b5e7473
View location in JBrowse: 
DCARv2_Chr6:26287108..26295018+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, XM_017402873.1, derives from mRNA, XM_017402873.1.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A2Q8 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0
Identity = 434/599 (72.45%), Postives = 490/599 (81.80%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTY-----VHNSV--PQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQ-SAEGKVSPGIAPDMNSNPYQQGQ--SSQFSDPMQIDSKLLQVQSQLGAVGAGAVNFT 584
            M Q+QRKK+ KE+DFFTEYG+ANRYKILE+IGKGSYGVVCAAIDT TGEKVAIKKI +IFEH+SDAIRILREIKLLRLLRHPDIV+I+RIM+PPS RDFKDIYVVFELMESDLHQVIKANDDLT +HHRFFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS DTISGVRNEKARKYL++MRKK PV  AEKF NSDPLA+RLLQRLLAFDPK+RPTAE+ALADPYF GLAKVEREPS    S  EF FE R++ KEDIR +I+REILEYHPQLLKDYMA  E TN LYPSA+GQF+KQF+YL +NGGKSGPV   +RKH S+PRS VNS  IPPK    L  S NR+IA+ + N+ + T++I  NL KA  PPPR+PT   GR  GPVLPYE S RN+   Y     + N+V  PQ++SP+Y  R NT   EK   E   DS+ VK   PQ +   K   G+  D+N+NPY Q Q  + Q +D + ID+KLLQ QSQ G + A AV  T
Sbjct:    1 MQQDQRKKSQKEMDFFTEYGDANRYKILEVIGKGSYGVVCAAIDTQTGEKVAIKKITDIFEHISDAIRILREIKLLRLLRHPDIVDIKRIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTHDHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKSVVHQLDLITDLLGTPSADTISGVRNEKARKYLMNMRKKHPVPSAEKFPNSDPLALRLLQRLLAFDPKERPTAEEALADPYFKGLAKVEREPSCHIFSKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGNEGTNFLYPSAIGQFRKQFSYLEENGGKSGPVIFPERKHVSLPRSTVNSSMIPPKAHPNLTSSGNRQIAKEAFNNNRITDAISRNLSKALCPPPRVPTAKPGRVVGPVLPYE-SDRNIKDAYDARVVIRNAVLPPQAMSPHYLLRNNTVYQEKSGTEVVGDSAQVKQQPPQFNITTKPGIGMTIDINTNPYDQSQAKAGQLNDRIAIDAKLLQAQSQFGVISAAAVAVT 598
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A1J0 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 838.18 bits (2164), Expect = 0.000e+0
Identity = 423/596 (70.97%), Postives = 490/596 (82.21%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTY-----VHNSV-PQSLSPNYTFR-TNTRDVEKLTKEDKVDSSLVKHAVPQ-SAEGKVSPGIAPDMNSNPYQQGQ--SSQFSDPMQIDSKLLQVQSQLGAVGAGAV 581
            M Q+QRK+  KE+ FFTEYG+ANRYKILE+IGKGSYGVVCAAIDTHTG KVAIKKINNIFEH+SDA RILREIKLLRLLRHPDIVEI+RIM+PPS RDF+DIYVVFELMESDLH+VIKANDDL+R+HHRFFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKS+VHQLDLIT+LLG+P++DTISGVRN+KARKYL +MR+K PV F+EKF NSDPLA+RLLQRLLAFDPKDRPTAE+ALADPYF GLAKVEREPS QPIS  EF FE R++ KEDIR +IYREILEYHPQLLKDYM   E    LYPSA+GQF+KQFA+L +N GKSGPV   +RKH S+PRS VNS +IPPK    L   D+R+IAE +C++   T++   N+ KAS PP R+P    GR  GPV+ YE + RN+   Y     V N+V PQ++SP+Y  R TN+ + EK   E + DS+ VK   PQ S   K + G+A D+N+NPY Q Q  + Q +D + ID+KLLQ QSQ G + A  V
Sbjct:    1 MQQDQRKQGLKEMQFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKINNIFEHISDAFRILREIKLLRLLRHPDIVEIKRIMLPPSRRDFRDIYVVFELMESDLHEVIKANDDLSRDHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFASKYTPAIDIWSIGCIFAEVLTGKPLFPGKSIVHQLDLITNLLGTPASDTISGVRNDKARKYLTNMREKHPVPFSEKFPNSDPLALRLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKLEFEFERRRVTKEDIRELIYREILEYHPQLLKDYMEGNEGAKFLYPSAIGQFRKQFAFLEENDGKSGPVLPPERKHLSLPRSTVNSSTIPPKSHPNLASFDSRQIAEGTCDNNAVTDATSRNVFKASYPPSRVPAAKPGRVVGPVIQYE-NCRNIKDAYDASVAVRNAVLPQAISPHYLLRTTNSVNEEKSGTETERDSTQVKQQPPQFSLSAKPTTGMAIDINTNPYHQPQAKAGQLNDQITIDAKLLQAQSQFGVIRATTV 595
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5A9L7 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0
Identity = 424/599 (70.78%), Postives = 483/599 (80.63%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTY-----VHNSV--PQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQ-SAEGKVSPGIAPDMNSNPYQQ--GQSSQFSDPMQIDSKLLQVQSQLGAVGAGAVNFT 584
            M Q+QRKK+ KE+DFFTEYG+ANRYKILE+IGKGSYGVVCAAIDTHTG KVAIKKI +IFEH+SDAIRILREIKLLRLLRHPDIVEI+RIM+PPS RDF+DIYVVFELMESDLHQVIKANDDLT EHHRFFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS DTISGVRNEKARKYL+ MRKK PV F EKF N DPLA+RLLQRLLAFDPK+RPTAE+ALADPYF GLAKVEREPS    S  EF FE R++ K+D+R +I+REILEY+PQLLKDYMA  E TN LYPSA+GQF+KQFAYL +NGGKSGPV   +RKH S+PRS VNS  IPPK    L  S N +IAE   N  + T++I GNL KA RPPPR+PT   GR  GPVLPYE S +N+   Y     + N++  PQ++SP Y  RT+  + E+   + K D +  K    Q +   K   G+  D+N+N Y Q   ++   +D + ID+KLLQ QSQ G + A AV  T
Sbjct:    1 MQQDQRKKSLKEMDFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKITDIFEHISDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRRDFRDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSADTISGVRNEKARKYLMSMRKKHPVPFHEKFPNLDPLALRLLQRLLAFDPKNRPTAEEALADPYFKGLAKVEREPSCHIFSKLEFEFERRRVTKDDVRELIFREILEYYPQLLKDYMAGSEGTNFLYPSAIGQFRKQFAYLEENGGKSGPVIPPERKHVSLPRSTVNSSMIPPKAHPNLASSGNLQIAEEVLNKNRITDTISGNLSKALRPPPRVPTAKPGRVVGPVLPYE-SDKNIKDAYDARVVIRNAIVPPQAMSPRYFLRTSAVNQEESGTQVKGDPAQAKQQPTQFNLTAKPGIGMTIDINTNRYNQPHAKAGHLTDRIAIDTKLLQAQSQFGVISAAAVAVT 598
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7A1F9 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0
Identity = 424/600 (70.67%), Postives = 486/600 (81.00%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTY-----VHNSV--PQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQ-SAEGKVSPGIAPDMNSNPYQQGQ--SSQFSDPMQIDSKLLQVQSQLGAVGAGAVNFTT 585
            M Q+ RKKN+ E+DFF+EY +ANRYKI E+IGKGSYGVVC+AIDT TGEKVAIKKI++IFEH+SDA RILREIKLLRLLRHPDIVEI+ +M+PPS RDFKDIYVVFELMESDLHQVIKANDDLTREH++FFLYQ+LRALK++HTANVYHRDLKPKNILANANCKLKICDFGLARVAF+DTP T+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS DTISGVRNEKARKYL++MRKK PV  AEKF NSDPLA+RLLQRLLAFDPK+RPTAE+ALADPYF GLAKVEREPS    S  EF FE R++ KEDIR +I+REILEYHPQLLKDYMA  E TN LYPSA+GQF+KQF+YL +NGGKSGPV   +RKH S+PRS VNS  IPPK    L  S NR+IA+ + N+ + T++I  NL KA  PPPR+PT   GR  GPVLPYE S RN+   Y     + N+V  PQ++SP+Y  R NT   EK   E   DS+ VK   PQ +   K   G+  D+N+NPY Q Q  + Q +D + ID+KLLQ QSQ G + A AV  T 
Sbjct:    1 MQQDHRKKNSSEMDFFSEYVDANRYKIQEVIGKGSYGVVCSAIDTQTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPMTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKSVVHQLDLITDLLGTPSADTISGVRNEKARKYLMNMRKKHPVPSAEKFPNSDPLALRLLQRLLAFDPKERPTAEEALADPYFKGLAKVEREPSCHIFSKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGNEGTNFLYPSAIGQFRKQFSYLEENGGKSGPVIFPERKHVSLPRSTVNSSMIPPKAHPNLTSSGNRQIAKEAFNNNRITDAISRNLSKALCPPPRVPTAKPGRVVGPVLPYE-SDRNIKDAYDARVVIRNAVLPPQAMSPHYLLRNNTVYQEKSGTEVVGDSAQVKQQPPQFNITTKPGIGMTIDINTNPYDQSQAKAGQLNDRIAIDAKLLQAQSQFGVISAAAVAVTA 599
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5WN22 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 828.55 bits (2139), Expect = 0.000e+0
Identity = 407/589 (69.10%), Postives = 485/589 (82.34%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPV--TDRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTYVHNSV-------PQSLSPNYTFRTNTRDVEKL-TKEDKVDSSLVKHAVPQ-SAEGKVSPGIAPDMNSNPYQ--QGQSSQFSDPMQIDSKLLQVQSQL 573
            M QN  KK+ KE+DFFTEYG+ANRYKILE+IGKGSYGVVCAA+DTHTGEKVAIKKI ++FEH SDAIRILRE+KLLRLLRHPDIVEI+R+M+PPS R+FKDI+VVFELMESDLHQVIKANDDLTREHH+FFLYQMLRA+K+MHTANVYHRDLKPKNILANANCKLK+CDFGLARVAF+DTPTTVFWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQL+LITDLLG+PS +TISGVRN+KARKYL +MR+K PV F++KF N+DPLA+RLLQRLLAFDPKDRPTAE+ALADPYF GLAK+EREPS QPIS  EF FE R++ KEDI+ +IYREILEYHPQLLKDY+   E TN LYPSA+GQF+KQFAYL +NGG+S PV   +RKH S+PRS V+S +IP   Q TLV S+NR++ E +  S K T++I GN PK +RPPPR+P+   GR  G V+PYE + +NV   +   S+       PQ +S +   RT+T + EK  T+ D+   + ++   PQ S   K +PG+  D+NSNPY   + ++ +  D + ID+K+LQ QSQ 
Sbjct:    1 MQQNHLKKDLKEMDFFTEYGDANRYKILEVIGKGSYGVVCAALDTHTGEKVAIKKIQDVFEHTSDAIRILREVKLLRLLRHPDIVEIKRLMLPPSKREFKDIFVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRAMKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLELITDLLGTPSPETISGVRNDKARKYLTEMRRKHPVPFSQKFPNADPLAVRLLQRLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPISKLEFEFERRRVTKEDIKELIYREILEYHPQLLKDYINGNEGTNFLYPSAIGQFRKQFAYLEENGGRSAPVFPLERKHVSLPRSTVHSTTIPSNTQSTLVSSENRQVKEEA--SKKVTDAISGN-PKIARPPPRVPSAKPGRVVGSVIPYE-NGKNVKDGFDAKSLYRNAVLPPQDVSAHCFLRTSTTNQEKSGTQADRNPQTKLQ---PQFSMVAKSAPGMVVDLNSNPYYRPRTKADKLHDRLPIDAKILQAQSQF 582
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H4X366 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 421/589 (71.48%), Postives = 483/589 (82.00%), Query Frame = 0
 
Query:    1 MLQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIP-GNLPKASR---PPPRIPTGRGSGPVLPYESSSRNVMGTY------VHNSVPQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQSAEG--KVSPGIAPDMNSNPYQQGQ--SSQFSDPMQIDSKLLQVQSQL 573
            M Q+QRKK+ KE+DFFTEYG++NRYKILEIIGKGSYGVVC+AIDTHTGEKVAIKKIN+IFEH+SDAIRILRE+KLLRLLRHPDIV+I+RIM+PPS R+FKDIYVVFELMESDLHQVIKANDDLT +HHRFFLYQMLRA+K+MHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS+DTISGVRNEKAR+YL  MRKKQPV+F+EK  N+DPLA+RLLQRLLAFDPKDRPTAE+ALADPYF GLAK EREPS QPIS  EF FE R++ KEDIR +I+REILEYHPQLLKDY+A  E  N LYPSA+GQF+KQFAYL +N GKSGPV   +RKH S+PRS VNS ++PP+  Q L    +R++ E SCNS + T++I  GN  K SR     P    GR  GPVLPYE + RN+   Y       +  VPQ +SP Y  RTNT +  K + E   +S+  +  +P    G  K SP IA D+N+N Y Q Q  SSQ +D + I++KLLQ QSQL
Sbjct:    1 MQQDQRKKSPKEMDFFTEYGDSNRYKILEIIGKGSYGVVCSAIDTHTGEKVAIKKINDIFEHISDAIRILREVKLLRLLRHPDIVDIKRIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTHDHHRFFLYQMLRAMKYMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSSDTISGVRNEKARRYLTGMRKKQPVLFSEKIPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKGLAKAEREPSCQPISKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYLAGNEGANFLYPSAIGQFRKQFAYLEENSGKSGPVIPPERKHVSLPRSTVNSSTVPPRTNQNLASCGSRQVTEESCNSIRVTDAISGGNFVKPSRPPPKVPAAKPGRVVGPVLPYE-NGRNINDVYDARAFLRNGVVPQGISPQYAARTNTANHAKSSPEIDRNSAQARQ-LPAQCNGVTKQSPQIAIDINANTYYQPQVKSSQLNDQIAINAKLLQEQSQL 587
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TD21 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 826.239 bits (2133), Expect = 0.000e+0
Identity = 424/613 (69.17%), Postives = 490/613 (79.93%), Query Frame = 0
 
Query:    2 LQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYES--SSRNVMG--TYVHNS-VPQSLSPNYTFRTNT-RDVEKLTKEDKVDSSLVKH---------------------AVPQSAEGKVSPGIAPDMNSNPYQQ--GQSSQFSDPMQIDSKLLQVQSQLGAVGAGA 580
            +Q+QRKK  KE DFFT+YG+ANRY+ILEIIGKGSYGVVCAAIDTHTG KVAIKKI +IFEH+SDAIRILREIKLLRLLRHPDIVEI+RIM+PPS RDFKDIYVVFELMESDLHQVIKANDDLT EHHRFFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLK+CDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS DTI+GVRNEKARKYL +MR+K+PV FAEKF N+DPLA++LLQRLLAFDPKDRP+AE+ALADPYF GLAK+EREPS QPIS  EF FE R++ KEDIR +I+REILEYHPQLLKDYMA    T+ LYPSA+G FKKQFAYL +N GKSGPV   +RKH S+PRS +NS +IPPK Q  +   DNR+I   +  ++ G   I GN+ K SRPPPR+P    GR  GPVLPYE+  S R+      Y+ NS +PQS+SP+  +RTN+ ++ EK   E  +++S VK                      A  Q    K+SPG++ D+NSNPY Q   ++   +  + ID+KLLQ QSQ  A GA A
Sbjct:    3 VQDQRKKIPKEADFFTDYGDANRYQILEIIGKGSYGVVCAAIDTHTGGKVAIKKITDIFEHMSDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSADTIAGVRNEKARKYLTEMRRKRPVPFAEKFPNADPLALKLLQRLLAFDPKDRPSAEEALADPYFKGLAKIEREPSCQPISKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGTGGTSFLYPSAIGHFKKQFAYLEENVGKSGPVIPPERKHVSLPRSTINSCTIPPKTQPNVSAVDNRQI---TGETSAGV--ISGNISKVSRPPPRVPNAKPGRVVGPVLPYENVRSLRDSHDGRAYIQNSLIPQSISPHCFYRTNSGKNEEKFRMESGIEASQVKQPPKQFIPVKSINGMSIEIDCKAQHQYTPSKLSPGMSFDINSNPYYQSPAKAGMLNSQIAIDAKLLQAQSQFVAAGAAA 610
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A218XVM2 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 826.239 bits (2133), Expect = 0.000e+0
Identity = 397/591 (67.17%), Postives = 481/591 (81.39%), Query Frame = 0
 
Query:    2 LQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYE---SSSRNVMGTYVHNSV--PQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQSAEGKVSPGIAPDMNSNPYQQGQSS----QFSDPMQIDSKLLQVQSQLGAVGA 578
            +Q +  K  KE DFFTEYGEANRYKI+E+IGKGSYGVVCAAIDTHTGEKVAIKKI+++FEH+SDAIRILRE+KLLRLLRHPDIVEI+RIM+PPS R+F+DIYVVFELMESDLHQVIKANDDLTREHH+FFLYQMLRA+K+MHTANVYHRDLKPKNILANANCKLK+CDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS+DTISGVRNEKARKYL++MRKKQPV F +KF N+DP+A++LLQRLLAFDPKDRPTAE+ALADPYF GL+KVEREPS QPIS  EF FE R++ KEDIR +IYREILEYHPQLLKDYM   E TN LYPSA+GQF++QFA+L ++GG+SGPV   +RKH S+PRS V+SR++PP P   +   + R+  E    + + T+S+ GN  +A+RPPPR+P+   GR  GPVLP E   S+  +    +  N+V  PQS+SP+  FR  +   EK  ++   ++         +++ K+    +P +N NPY   Q+S    + ++ + +++K+ Q QSQ G VGA
Sbjct:    1 MQQEHPKKLKETDFFTEYGEANRYKIVEVIGKGSYGVVCAAIDTHTGEKVAIKKIHDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRAMKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSSDTISGVRNEKARKYLMEMRKKQPVSFTQKFPNADPVALKLLQRLLAFDPKDRPTAEEALADPYFKGLSKVEREPSCQPISKLEFEFERRRVTKEDIRELIYREILEYHPQLLKDYMNGNEGTNFLYPSAIGQFRRQFAHLEEHGGRSGPVIPLERKHVSLPRSTVHSRTVPPNPHNNVRSVEERQSNEEGSKNLRVTDSLDGNSVRAARPPPRVPSAKPGRVVGPVLPSENVRSTKDSYDPRFYRNAVLPPQSISPHCFFRPQSVGNEKPVRDSNRNT---------TSQEKLVNTASPQVNPNPYFPSQASSIGQKLNERIAMEAKMFQAQSQFGTVGA 582
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TNX5 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 424/616 (68.83%), Postives = 490/616 (79.55%), Query Frame = 0
 
Query:    2 LQNQRKKNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT------GRGSGPVLPYES--SSRNVMG--TYVHNS-VPQSLSPNYTFRTNT-RDVEKLTKEDKVDSSLVKH---------------------AVPQSAEGKVSPGIAPDMNSNPYQQ--GQSSQFSDPMQIDSKLLQVQSQLGAVGAGA 580
            +Q+QRKK  KE DFFT+YG+ANRY+ILEIIGKGSYGVVCAAIDTHTG KVAIKKI +IFEH+SDAIRILREIKLLRLLRHPDIVEI+RIM+PPS RDFKDIYVVFELMESDLHQVIKANDDLT EHHRFFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLK+CDFGLARVAF+DTPTT+FWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAE+LTGKPLFPGKSVVHQLDLITDLLG+PS DTI+GVRNEKARKYL +MR+K+PV FAEKF N+DPLA++LLQRLLAFDPKDRP+AE+ALADPYF GLAK+EREPS QPIS  EF FE R++ KEDIR +I+REILEYHPQLLKDYMA    T+ LYPSA+G FKKQFAYL +N GKSGPV   +RKH S+PRS +NS +IPPK Q  +   DNR+I   +  ++ G   I GN+ K SRPPPR+P       GR  GPVLPYE+  S R+      Y+ NS +PQS+SP+  +RTN+ ++ EK   E  +++S VK                      A  Q    K+SPG++ D+NSNPY Q   ++   +  + ID+KLLQ QSQ  A GA A
Sbjct:    3 VQDQRKKIPKEADFFTDYGDANRYQILEIIGKGSYGVVCAAIDTHTGGKVAIKKITDIFEHMSDAIRILREIKLLRLLRHPDIVEIKRIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTHEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSADTIAGVRNEKARKYLTEMRRKRPVPFAEKFPNADPLALKLLQRLLAFDPKDRPSAEEALADPYFKGLAKIEREPSCQPISKLEFEFERRRVTKEDIRELIFREILEYHPQLLKDYMAGTGGTSFLYPSAIGHFKKQFAYLEENVGKSGPVIPPERKHVSLPRSTINSCTIPPKTQPNVSAVDNRQI---TGETSAGV--ISGNISKVSRPPPRVPNGIEAKPGRVVGPVLPYENVRSLRDSHDGRAYIQNSLIPQSISPHCFYRTNSGKNEEKFRMESGIEASQVKQPPKQFIPVKSINGMSIEIDCKAQHQYTPSKLSPGMSFDINSNPYYQSPAKAGMLNSQIAIDAKLLQAQSQFVAAGAAA 613
[Close]
BLAST of XM_017402873.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IBK0 (Mitogen-activated protein kinase {ECO:0000256|ARBA:ARBA00012411} (2.7.11.24 {ECO:0000256|ARBA:ARBA00012411}))

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 403/582 (69.24%), Postives = 476/582 (81.79%), Query Frame = 0
 
Query:    8 KNTKELDFFTEYGEANRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKINNIFEHVSDAIRILREIKLLRLLRHPDIVEIRRIMVPPSSRDFKDIYVVFELMESDLHQVIKANDDLTREHHRFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYIATRWYRAPELCGSFLSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGSPSTDTISGVRNEKARKYLIDMRKKQPVVFAEKFANSDPLAIRLLQRLLAFDPKDRPTAEQALADPYFNGLAKVEREPSSQPISNDEFAFESRKMKKEDIRAIIYREILEYHPQLLKDYMAQKESTNVLYPSAVGQFKKQFAYLADNGGKSGPVT--DRKHASVPRSAVNSRSIPPKPQQTLVPSDNRRIAEVSCNSTKGTNSIPGNLPKASRPPPRIPT---GRGSGPVLPYESSSRNVMGTY-----VHNSV--PQSLSPNYTFRTNTRDVEKLTKEDKVDSSLVKHAVPQSAEGKVSP--GIAPDMNSNPYQQGQS--SQFSDPMQIDSKLLQVQSQL 573
            ++ KE DFFTEYGEANRYKILE+IGKGSYGVVCAAIDTHT EKVAIKKIN++FEH+SDAIRILRE+KLLRLLRHPDIVEI+RIM+PPS R+FKDIYVVFELMESDLHQVIKANDDLTREHH+FFLYQMLRALK+MHTANVYHRDLKPKNILANANCKLK+CDFGLARVAF+DTPTTVFWTDY+ATRWYRAPELCGSF SKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLG+PS++TI+GVRNEKARKYL++MRKK PV  A+KF N +PLA++L+QRL+AFDPKDRPTA++ALADPYF GL+K+EREP   PIS  EF FE R++ K+DIR +IYREILEYHPQLLKDYM   E +N LYPSA+GQF+KQFAYL +N G+SGPV   +RKH S+PRS V+S ++PP  QQ +  S+NR++ + +  + +  ++I G   K SRPPPR+PT   GR  G  +    +SRN+  TY       N++  PQ++SP+  FRTNT + EK + E   DSS VK   PQ       P  GI  D+N+NPY Q Q+   Q +D + ID+KLLQ Q+Q 
Sbjct:   29 QDLKEKDFFTEYGEANRYKILEVIGKGSYGVVCAAIDTHTREKVAIKKINDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEILTGKPLFPGKSVVHQLDLITDLLGTPSSETIAGVRNEKARKYLMEMRKKPPVPLAQKFPNVEPLALQLMQRLIAFDPKDRPTAQEALADPYFKGLSKIEREPCCLPISKLEFEFERRRVTKDDIRELIYREILEYHPQLLKDYMNGSEGSNFLYPSAIGQFRKQFAYLEENSGRSGPVIPPERKHVSLPRSTVHSSTVPPNVQQNVASSENRQMTQEASKNFRVADAISGTQSKVSRPPPRVPTAKPGRVVGSSVVPNENSRNIKDTYDARIFYRNAILPPQNVSPHCFFRTNTLNQEKSSLEVGKDSSHVKLE-PQQCIVAAKPVHGIPIDVNTNPYYQPQAKLDQLNDRITIDAKLLQAQTQF 609
Match NameStatsDescription
A0A5B7A2Q8E-Value: 0.000e+0, PID: 72.45Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A5J5A1J0E-Value: 0.000e+0, PID: 70.97Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A5J5A9L7E-Value: 0.000e+0, PID: 70.78Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A5B7A1F9E-Value: 0.000e+0, PID: 70.67Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A6P5WN22E-Value: 0.000e+0, PID: 69.10Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A2H4X366E-Value: 0.000e+0, PID: 71.48Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A6I9TD21E-Value: 0.000e+0, PID: 69.17Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A218XVM2E-Value: 0.000e+0, PID: 67.17Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A6I9TNX5E-Value: 0.000e+0, PID: 68.83Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
A0A5C7IBK0E-Value: 0.000e+0, PID: 69.24Mitogen-activated protein kinase {ECO:0000256|ARBA... [more]
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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100

The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results.

View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/

Data from this analysis can be viewed in JBrowse here.
NCBI peptide blastp to SwissProt and TrEMBL without DCAR
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction.