Resource Type:
Polypeptide
Name:
XM_017360120.1
Identifier:
XM_017360120.1-protein
Sequence:
MAGGDATATTGAVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLS
HLLEEVRDFEGDLGPLDQSHSSCLVDLTVVIKASKRLVCAADQFDPKISP
EGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRA
TERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGG
TENVEIVSTSNSSKDNISDQMIHRLERRGSSYQCLINNADADQSENSKKN
EKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCP
KTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSD
VSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAI
PILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRS
GSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDA
AAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLAS
HQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACI
SRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL
Sequence Length:
637
Sequence Checksum:
b23260b685f1a76b2b043bd6d6af862f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, XM_017360120.1, derives from mRNA, XM_017360120.1. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
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Analysis Date: 2022-01-09
Analysis Name: NCBI peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 10
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM13 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 460/651 (70.66%), Postives = 533/651 (81.87%), Query Frame = 0
Match: A0A5B6ZM13 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 460/651 (70.66%), Postives = 533/651 (81.87%), Query Frame = 0
Query: 1 MAGGDATATTGAVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLD-----QSHSSCLVDLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLER----RGSSYQCLINNADADQSENS-----KKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL 637
MAGGD+ A Q+ L L++D R+S GF G FK+DC+DL+RR+ALL+HL+EE+RD +GDL P D S SSCL DLTV ++A+KRL+ AA D +IS + A KK +FQFQC+TWKLE+AL + PY+ L+ISEEVQEQV+LVR QLRRATERY G L L+RALS L+KE+D LQ R+I L VE+ G+IDH + V+ V S ++Q+IH ER SS CL N+ DA + NS ++N+ SP+IPDDFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGN CPKTQQKL+NLTLTPNYVLRSLITQWC HN+EQP LT+G++K+SDG+F DVSR+IAAIE+LVRKLSS+SIEE RAAV+EIRSLSKRSTDNRILI EAGAIP+LV+LL ++D +TQ +++TSILNLSIYE NKGLIMLAGAIPSIVQVLR+GSME +ENAAATLFSLSLADENKIIIGASGAIPALV+L QNGS+RGKKDAA ALFNLCIYQGNKGRAVRAGII ALL MLTD + CMVDEALTILSVLASH EAKAAIV+ASTIP LIDL+RTGLPRNKE+AAAILLSLCKR+ ENLACISRLGAVIPLTEL KSGTERAKRKATSLLEHLQK + L
Sbjct: 1 MAGGDSAVAGDATQAPLRLVRDVVRISGAGFSGAFKRDCTDLSRRVALLAHLIEEIRDLKGDLRPFDASTSSSSTSSCLSDLTVALQAAKRLLSAASNLDSEISSDVAFKKISFQFQCVTWKLEKALGNLPYNHLDISEEVQEQVELVRAQLRRATERYGGPLNSTILTRALSLPLEKEIDLLQSGRRVIGSLHVENIGNIDHEVSAKVDSVPKGIGSIGPSAEQLIHESERPRDSSASSGVCLPND-DAGRGINSASKSLEENKNPGSPMIPDDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNASCPKTQQKLENLTLTPNYVLRSLITQWCTKHNIEQPMTLTNGRIKKSDGSFRDVSRDIAAIEALVRKLSSQSIEENRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLITEDSLTQEHAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIIAALLNMLTDLTSCMVDEALTILSVLASHPEAKAAIVKASTIPVLIDLMRTGLPRNKENAAAILLSLCKRENENLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLQKLQPL 650
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EV80 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 461/652 (70.71%), Postives = 531/652 (81.44%), Query Frame = 0
Match: A0A4S4EV80 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 461/652 (70.71%), Postives = 531/652 (81.44%), Query Frame = 0
Query: 1 MAGGDATATTGAVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLD------QSHSSCLVDLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLER----RGSSYQCLINNADADQSENSKKN-----EKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL 637
MAGGDAT Q+ L L++D R+S+ GFGG FK+DC+DLARR++LL+HLLEE+RDF+ DL PLD S+SS L DLT I+A+KRL+ +A FD KI + A+KK +FQFQC+TWKLE+AL + YDQ +ISEEVQEQV LVR QLRRATER G L+ LSRALSQ LD+E+D L R++ L V++ G+IDH V + N SKD+ +Q+ H ER SS C N+ DA N+ +N +K SP+IP DF CPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKLQNLTLTPNYVLRSLI+QWC HN+EQP ALT+G++K+SDG+F DVS +IAAIE+LVRKLSS+SIEE RAAVSEIRSLSKRSTDNRILI EAGAIP+LVSLL SDD +TQ NS+TSILNLSIYE NKGLIMLA AIPSIVQVL++GSME +EN+AATLFSLSLADENKIIIGASGAIPALV+L ++GS+RGKKDAA ALFNLCIYQGNKGRA+RAGIITALLKMLTD+S CMVDEALTILSVLASH EAK AI +ASTI LIDLLRTGLPRNKE+AAAILLSLCKR T+NLAC+SRLGAVIPLTEL KSGTERAKRKATSLLEHLQK +QL
Sbjct: 1 MAGGDATVAGDPTQAALRLVRDVLRLSAAGFGGAFKRDCTDLARRVSLLAHLLEEIRDFKTDLRPLDVPAASSSSNSSFLSDLTTAIQAAKRLISSASNFDSKIYSDLASKKISFQFQCVTWKLEKALGNLAYDQFDISEEVQEQVQLVRAQLRRATERCGGPLSSTILSRALSQPLDREIDLQPLGRRVMGSLHVKNIGNIDHEVKVKVPPIPKGNGSKDHSVNQINHESERPKNSSASSEVCQHNSVDAGGKLNTNRNHMEENKKPDSPLIPVDFHCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCAKHNIEQPMALTTGRIKKSDGSFRDVSGDIAAIEALVRKLSSQSIEERRAAVSEIRSLSKRSTDNRILIAEAGAIPLLVSLLISDDCLTQENSVTSILNLSIYENNKGLIMLANAIPSIVQVLKAGSMEARENSAATLFSLSLADENKIIIGASGAIPALVELLESGSARGKKDAATALFNLCIYQGNKGRAMRAGIITALLKMLTDSSDCMVDEALTILSVLASHPEAKIAIAKASTIQVLIDLLRTGLPRNKENAAAILLSLCKRVTQNLACVSRLGAVIPLTELSKSGTERAKRKATSLLEHLQKLQQL 652
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PGT0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 895.19 bits (2312), Expect = 0.000e+0
Identity = 458/655 (69.92%), Postives = 527/655 (80.46%), Query Frame = 0
Match: A0A2R6PGT0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 895.19 bits (2312), Expect = 0.000e+0
Identity = 458/655 (69.92%), Postives = 527/655 (80.46%), Query Frame = 0
Query: 1 MAGGDATATTG--AVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLDQSHSSCLV--------DLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLE----RRGSSYQCLINNADADQSENS-----KKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQ 636
MAGGD + AVQ+ L L++D R+SS GF G FKK+C+DL+RR+ALL+HLLEE+RDF+GD G S + DLTV I+A+KRL+ AA FD KIS + + KK AFQFQC+TWKLE+AL + YDQ +ISEEVQEQVDLVR QLRRATER+ G L+ LSRALSQ LDKE+D L R++ L +E+ G+IDH V + N + + +Q+ H E SS C N+ DA N ++N+K +SPVIP+DFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKL+NLTLTPNYVLRSLITQWC HN+EQP + +G++K+SDG+F DV+ +IAAIE+LVRKLSSRS+EE R AVSEIRSLSKRSTDNRILI EAGAIP+LVSLLTSDDG+TQ N++TSILNLSIYE NKGLIMLA AIPSIVQVLR+GSME +ENAAATLFSLSLADENKIIIGASGAI ALV+L + GS+RGKKDAA ALFNLCIYQGNKGRAVRAGIITALLKMLTD+ CMVDEALTILSVLASHQEAK AIV+ASTIPALIDLLRTG PRNKE+A AILLSLCKRDTENLACISRLGAVIPL+EL KSGTERAKRKATSLLEHL+K +Q
Sbjct: 1 MAGGDDVVSIAGDAVQAPLRLVRDVTRLSSAGFEGAFKKECTDLSRRVALLAHLLEEIRDFKGDFGNFAHSDAQASSSSASSCLSDLTVAIQAAKRLLSAAGNFDSKISSDMSPKKIAFQFQCVTWKLEKALGNLAYDQFDISEEVQEQVDLVRTQLRRATERHGGPLSSMVLSRALSQPLDKEIDLQPLNRRVMGSLHLENIGNIDHEVKLKVAPLPKGNGLQVHSVNQICHESETPRNSSASSKVCRQNDVDAGGELNIANNHLEENKKPNSPVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLTLTPNYVLRSLITQWCAKHNIEQPMTMMNGRIKKSDGSFRDVTGDIAAIEALVRKLSSRSLEERRVAVSEIRSLSKRSTDNRILIAEAGAIPLLVSLLTSDDGLTQENAVTSILNLSIYENNKGLIMLANAIPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIQALVELLETGSTRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSGNCMVDEALTILSVLASHQEAKIAIVKASTIPALIDLLRTGFPRNKENATAILLSLCKRDTENLACISRLGAVIPLSELAKSGTERAKRKATSLLEHLRKLQQ 655
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZPT7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0
Identity = 459/652 (70.40%), Postives = 530/652 (81.29%), Query Frame = 0
Match: A0A5B6ZPT7 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0
Identity = 459/652 (70.40%), Postives = 530/652 (81.29%), Query Frame = 0
Query: 1 MAGGDATATTGAVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDL-----GPLDQSHSSCLVDLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGS-LTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLER----RGSSYQCLINNADADQSENS-----KKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL 637
MAGGDA + +Q+ L LI+D R+S GF G FK+DC DL+RR+ALL+HLLEE+RDF+GDL S S+CL DLT+ ++A+KRL+ A F KIS +GAAKK FQFQC+T KLE+AL + PYD +ISEEVQEQV+LVR QLRRAT+RY G L L+RALS L+KE+D LQ R+I L VE+ G+IDH + V+ V S ++Q+IH ER SS CL N+ DA + NS ++N+ SP+IPDDFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGN CPKTQQKL+NLTLTPNYVLRSLITQWC HN+EQP LT+G++K+SDG+F DVSR+IAAIE+LVRKLSS+SIEE RAAV+EIRSLSKRSTDNRILI EAGAIP+LV+LL ++D +TQ +++TSILNLSIYE NKGLIMLAGAIPSIVQVLR+GSME +ENAAATLFSLSLADENKIIIGASGAIPALV+L QNGS+RGKKDAA ALFNLCIYQGNKGRAVRAGII ALL MLTD + CMVDEALTILSVLASH EAKAAIV+ASTIP LIDL+RTGLPRNKE+AAAILLSLCKR+ ENLACISRLGAVIPLTEL KSGTERAKRKATSLLEHLQK + L
Sbjct: 1 MAGGDAAVSGDGIQAALRLIRDVVRISGAGFSGAFKRDCMDLSRRVALLAHLLEEIRDFKGDLRSLDASTSSSSTSACLSDLTLALQAAKRLLSPAGNFGSKISSDGAAKKITFQFQCVTCKLEKALGNLPYDHFDISEEVQEQVELVRAQLRRATKRYGGGPLNSTILTRALSLPLEKEIDLLQSGRRVIGSLHVENIGNIDHEVSAKVDSVPKGIGSIGPSAEQLIHESERPRDSSASSGVCLPND-DAGRGINSASKSLEENKNPGSPMIPDDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNASCPKTQQKLENLTLTPNYVLRSLITQWCTKHNIEQPMTLTNGRIKKSDGSFRDVSRDIAAIEALVRKLSSQSIEENRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLITEDSLTQEHAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIIAALLNMLTDLTSCMVDEALTILSVLASHPEAKAAIVKASTIPVLIDLMRTGLPRNKENAAAILLSLCKRENENLACISRLGAVIPLTELAKSGTERAKRKATSLLEHLQKLQPL 651
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0DD27 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 451/655 (68.85%), Postives = 527/655 (80.46%), Query Frame = 0
Match: A0A7J0DD27 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 451/655 (68.85%), Postives = 527/655 (80.46%), Query Frame = 0
Query: 1 MAGGDATATTG--AVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLDQSHSSCLV--------DLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLERR----GSSYQCLINNADAD-----QSENSKKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQ 636
MAGGDA + +VQ+ L L++D R+SS GFGG FKKDC+DL+RR+ALL+HLLEE+RDF+GD G S + DLTV I+A+KRL+ AA FD KISP+ +AKK AFQFQC+TWKLE+AL + YDQ +ISEEVQEQVDLVR QLRRATER+ G L+ LSRALSQ LD E+D L R++ L +E+ G+IDH V + N + + +Q+ H E SS C + DA + + ++N K +SPVIP+DFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKL+NLTLTPNYVLRSLITQWC HN+EQ + +G++K+SDG+F DV+ ++AAIE+LVRKLSS+S+EE RAAVSEIRSLSKRSTDNRILI EAGAI +LV+LLT+DDG+TQ N++TSILNLSIYE NKGL+MLA AIPSIVQVLR+GSME +ENAAATLFSLSL DENKIIIGASGAI ALV+L + GS+RGKKDAA ALFNLCIYQGNKGRAVRAGIITALLKMLTD+S CMVDEALTILSVL+SHQEAK AIV+ASTIP LIDLLRTGLPRNKE+AAAILLSLCKRDTE LACISRLGAVIPL+EL K GTERAKRKATSLLEHL+K +Q
Sbjct: 1 MAGGDADVSVAGDSVQTPLRLVRDVTRLSSAGFGGAFKKDCTDLSRRVALLAHLLEEIRDFKGDFGKFAHSDAQASSSSASSCLSDLTVAIQAAKRLLSAAGNFDSKISPDVSAKKIAFQFQCVTWKLEKALGNLAYDQFDISEEVQEQVDLVRAQLRRATERHGGPLSSMILSRALSQPLDNEIDLQPLNRRVMVSLHIENIGNIDHEVKLKVAPLPKGNGLQVHSVNQICHESETSRNWSASSKVCQQRDVDAGGELKTANNHLEENNKPNSPVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLTLTPNYVLRSLITQWCAKHNIEQSMTVMNGRIKKSDGSFRDVTGDMAAIEALVRKLSSQSLEERRAAVSEIRSLSKRSTDNRILIAEAGAITLLVNLLTADDGLTQENAVTSILNLSIYENNKGLVMLANAIPSIVQVLRAGSMEARENAAATLFSLSLIDENKIIIGASGAIQALVELLETGSTRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSSNCMVDEALTILSVLSSHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLSLCKRDTEKLACISRLGAVIPLSELAKGGTERAKRKATSLLEHLRKLQQ 655
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9STT0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 882.863 bits (2280), Expect = 0.000e+0
Identity = 460/652 (70.55%), Postives = 529/652 (81.13%), Query Frame = 0
Match: A0A6I9STT0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 882.863 bits (2280), Expect = 0.000e+0
Identity = 460/652 (70.55%), Postives = 529/652 (81.13%), Query Frame = 0
Query: 1 MAGGDATATTG-AVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEG-----DLGPLDQSHSSCLVDLTVVIKASKRLVCAADQFDP-KISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLER-RGSSYQCLINNA-DADQS-------ENSKKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQ 636
MAGG A G A + L LI++ R+SS GF G FKKDC+DL RR+ALL+HLLEE+RD + ++G S SSC DL V ++A+KRLV AA+ FD KIS +GA KK FQFQC+TWKLE+AL + PYD +ISEEVQEQV+LVR QLRRATERY G L + L RALSQ LDKE+D Q NRL L V+S GSID +E + N+S+ + +D++I + E R SS IN D D +N ++N+K SPVIPDDFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKL++LTLTPNYVLRSLI+QWC+ HNVEQP AL SGK+K+SDG+F DVS +IAAI++LVRKLSSRS EE RAAV+EIRSLSKRSTDNRIL+ EAGAIPILV+LLTSDDG Q+N++TSILNLSIY+ NKGLIMLA AIPSIVQVLR+GSME KENAAATLFSLSLADENKIIIGASGAIPALV L Q+GSSRGKKDAA ALFNLCIY GNKGRA+RAGIITALLKMLTD+S CMVDEALTILSVLASHQEAK AIV+ASTIP L+DLLR G PRNKE+A+AILLSLCKRD ENLAC+SRLGAVIPL+EL ++GTERAKRKATSLLEHL+KS+Q
Sbjct: 1 MAGGGTAAIEGGATTAPLRLIREVARISSAGFSGYFKKDCADLGRRVALLAHLLEEIRDSKKIQENVEVG-SSSSFSSCFSDLIVALQAAKRLVSAANNFDSSKISSDGATKKIYFQFQCVTWKLEKALTNLPYDDFDISEEVQEQVELVRAQLRRATERYGGPLNSSLLCRALSQPLDKEIDLFQPSNRLSGSLHVDSIGSIDLEVRPKLEALLEGNASEHHSTDEVIKKKESLRNSSTSHEINAPKDPDSGRIKNLTCKNLEENKKLDSPVIPDDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLRHLTLTPNYVLRSLISQWCVKHNVEQPMALMSGKIKKSDGSFRDVSGDIAAIQALVRKLSSRSTEERRAAVAEIRSLSKRSTDNRILLAEAGAIPILVNLLTSDDGQIQDNAVTSILNLSIYDNNKGLIMLANAIPSIVQVLRAGSMEAKENAAATLFSLSLADENKIIIGASGAIPALVDLLQSGSSRGKKDAATALFNLCIYHGNKGRAIRAGIITALLKMLTDSSSCMVDEALTILSVLASHQEAKVAIVKASTIPVLMDLLRAGSPRNKENASAILLSLCKRDNENLACLSRLGAVIPLSELARNGTERAKRKATSLLEHLRKSQQ 651
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PB25 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 449/654 (68.65%), Postives = 525/654 (80.28%), Query Frame = 0
Match: A0A2R6PB25 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 882.478 bits (2279), Expect = 0.000e+0
Identity = 449/654 (68.65%), Postives = 525/654 (80.28%), Query Frame = 0
Query: 1 MAGGDATATTG--AVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLDQSHSSCLV--------DLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLERR----GSSYQCLINNADA----DQSENSKKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQ 636
MAGGDA + AVQ+ L L++D R+S+ GFGG FKKDC+DL+RR+ALL+HLLEE+RDF+GD G S + DLTV I+A+KRL+ AA FD KISP+ +AKK AFQFQC+TWKLE+AL + YDQ +ISEEVQEQVDLVR QL+RATER+ G L+ LSRALSQ LD E+D L R++ L +E+ G+IDH V + N + + +Q+ H E SS C ++ DA + N + +P+IP+DFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKL+NLTLTPNYVLRSLITQWC HN+EQ + +G++K+SDG+F DV+ ++AAIE+LVRKLSS+S+EE RAAVSEIRSLSKRSTDNRILI EAGAI +LV+LLT+DDG+TQ N++TSILNLSIYE NKGLIMLA AIPSIVQVLR+GSME +ENAAATLFSLSLADENKIIIGASGAI ALV+L + GS+RGKKDAA ALFNLCIYQGNKGRAVRAGIITALLKMLTD+S CMVDEALTILSVL+SHQEAK AIV+ASTIP LIDLLRTGLPRNKE+AAAILLSLCKRDTE LACISRLGAVIPL+EL K GTERAKRKATSLLEHL+K +Q
Sbjct: 1 MAGGDADVSVSGDAVQTPLRLVRDVTRLSAAGFGGAFKKDCTDLSRRVALLAHLLEEIRDFKGDFGKFAHSDAQASSSSASSCLSDLTVAIQAAKRLLSAAGNFDSKISPDVSAKKIAFQFQCVTWKLEKALGNLAYDQFDISEEVQEQVDLVRAQLKRATERHGGPLSSMVLSRALSQPLDNEIDLQPLNRRVMVSLHIENIGNIDHEVKLKVAPLPKGNGLQVHSVNQICHESETSRNWSASSKVCQQSDVDAGGELKTANNHLEENNKPNPLIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLTLTPNYVLRSLITQWCAKHNIEQSMTMMNGRIKKSDGSFRDVTGDMAAIEALVRKLSSQSLEERRAAVSEIRSLSKRSTDNRILIAEAGAITLLVNLLTADDGLTQENAVTSILNLSIYENNKGLIMLANAIPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIQALVELLETGSTRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSSNCMVDEALTILSVLSSHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLSLCKRDTEKLACISRLGAVIPLSELAKCGTERAKRKATSLLEHLRKLQQ 654
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SY73 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 447/651 (68.66%), Postives = 520/651 (79.88%), Query Frame = 0
Match: A0A6I9SY73 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 874.004 bits (2257), Expect = 0.000e+0
Identity = 447/651 (68.66%), Postives = 520/651 (79.88%), Query Frame = 0
Query: 1 MAGGDATATTGAVQSL-LSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFE----GDLGPLDQSHSSCLVDLTVVIKASKRLVCAADQFD-PKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLERRGSSYQCLINNADADQSEN--------SKKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL 637
MA D TA G V + L L++D R+S GF G FKKDC+DLARR++LL+HLLEE+RD + S DLT+ ++A+KRLV AA+ FD K S +GA KK FQFQC+TWKLE+AL +FPYD+ +ISEEVQEQ++LVR QLRRATERY G L L RALSQ LDKE+DP Q NRL+ GL VE+ G+IDH T+ VE ++ S D+ SD + ++ R S ++ + SE ++N+K S VIPDDFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKLQ+LTLT NYVLRSLI+ WC+ +NVEQPTAL +G++K+SDG+F DV+ +IAAIE+LVRKLSSRSIEE RAAV+EIRSLSKRSTDNRIL+GEAGAIPILV+LLTSDDG Q+N++TSILNLSI + NKGLIMLA AIPSIVQVLR+GSME KENAAATLF LSLADENKIIIGASGAIPALV L QNGSSRGKKDAA ALFNLCIYQGNKGRAVRAGIITALLKMLTD+S CMVDEALTILSVLASHQEAK AI+ STIP L+DLLRTGLPRNKE+AAA LLSLC+RD EN+A ++RLGA IPL+EL K+GTERAKRKATSLLE L+KS+ L
Sbjct: 1 MAAADTTALGGGVTAAPLRLVRDVVRISIAGFSGFFKKDCTDLARRVSLLAHLLEEIRDSKKIRVNSEVGSSSFSGSFFADLTLALQAAKRLVFAANNFDSAKFSSDGATKKILFQFQCVTWKLEKALSNFPYDEFDISEEVQEQIELVRAQLRRATERYGGPLNSGVLYRALSQPLDKEIDPFQQSNRLMGGLHVENIGNIDHEVTKKVECLAEGCRSVDHASDDVQNQESERNSPTSSEVSVSKDSDSEKINSPSCKTQEENKKPDSLVIPDDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTTNYVLRSLISHWCVKNNVEQPTALMNGRIKKSDGSFRDVTGDIAAIEALVRKLSSRSIEERRAAVAEIRSLSKRSTDNRILLGEAGAIPILVNLLTSDDGQIQDNAVTSILNLSILDDNKGLIMLANAIPSIVQVLRAGSMEAKENAAATLFCLSLADENKIIIGASGAIPALVDLLQNGSSRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSSSCMVDEALTILSVLASHQEAKLAIMNGSTIPVLVDLLRTGLPRNKENAAATLLSLCRRDNENIARLTRLGAAIPLSELAKTGTERAKRKATSLLEQLRKSQHL 651
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TZI1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 443/656 (67.53%), Postives = 530/656 (80.79%), Query Frame = 0
Match: A0A068TZI1 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 443/656 (67.53%), Postives = 530/656 (80.79%), Query Frame = 0
Query: 1 MAGGDATATTGA---VQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEG-----DLGPLDQSHSSCLVDLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQSLDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLERRGS----SYQCLINNADADQSENS-------KKNEKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQKSKQL 637
MAGGDAT +Q+ L L+ D R+S GF G F+KDC++LARR++LL+HLLEE+++F+G G S +S L DL++ ++A+KRL+ AA+ FDP+IS AKKF+FQFQC+TWKLE+AL S PYD +ISEEVQEQV+LVR QLRRAT+RY G L N LSRALSQ L++++DP LRNRLI L + + G+IDH + + + +S D+ S Q++ RR S S C +++ + + S ++N+K+ S ++PDDFLCPISLE+MRDPVIVATGQTYERSYIQRWIDCGNT CPKTQQKL+NL LTPNY LRSLI+QWC HNVEQPTALT+G++K+SDG+F DVS +IAAIE+LVRKLSSRSIEE RAAV EIRSLSKRSTDNRILI +AGAIP+LVSLL +D TQ +++TSILNLSI+E NKGLIMLAGA+PSIVQ+LR+GSME +ENAAATLFSLSLADENKIIIGASGAIPALV L QNGS+RG+KDAA ALFNLCIYQGNKGRAVRAGIITALLKML+DTS MVDEALTILSVLA +QEAKAAIV+ASTIP LIDL+RTGLPRNKE+AAAILL LCKRD +NLAC+SRLGAVIPLTEL K+GTERAKRKA SLLEHL++S L
Sbjct: 1 MAGGDATTAVAGDRPLQAPLRLVHDVVRISQAGFSGSFQKDCTNLARRVSLLAHLLEEIKEFKGYDDNGHAGSSSSSSNSSLFDLSLALEAAKRLLLAANTFDPEISSAELAKKFSFQFQCVTWKLEKALASIPYDHFDISEEVQEQVELVRSQLRRATDRYGGPLNSNMLSRALSQPLNRDVDPFHLRNRLIGSLHIANIGNIDHVREKVGSVANIKDSESDDGSVQIVQEQGRRKSLSRSSKICQPKDSETNGIDESCCSTRSPEENKKSDSSIVPDDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLKLTPNYALRSLISQWCTEHNVEQPTALTNGRIKKSDGSFRDVSGDIAAIEALVRKLSSRSIEERRAAVVEIRSLSKRSTDNRILIADAGAIPVLVSLLACEDNQTQEHAVTSILNLSIFENNKGLIMLAGAVPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYQGNKGRAVRAGIITALLKMLSDTSSGMVDEALTILSVLAGNQEAKAAIVKASTIPVLIDLMRTGLPRNKENAAAILLCLCKRDQDNLACLSRLGAVIPLTELTKNGTERAKRKANSLLEHLRRSNHL 656
BLAST of XM_017360120.1 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GJW0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7133566.1}))
HSP 1 Score: 872.848 bits (2254), Expect = 0.000e+0
Identity = 447/648 (68.98%), Postives = 520/648 (80.25%), Query Frame = 0
Match: A0A834GJW0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7133566.1}))
HSP 1 Score: 872.848 bits (2254), Expect = 0.000e+0
Identity = 447/648 (68.98%), Postives = 520/648 (80.25%), Query Frame = 0
Query: 1 MAGGDATATTGAVQSLLSLIQDTNRVSSNGFGGPFKKDCSDLARRIALLSHLLEEVRDFEGDLGPLDQSHSSCLV-----DLTVVIKASKRLVCAADQFDPKISPEGAAKKFAFQFQCLTWKLERALRSFPYDQLEISEEVQEQVDLVRGQLRRATERYSGSLTMNRLSRALSQS-LDKELDPLQLRNRLIAGLLVESTGSIDHGGTENVEIVSTSNSSKDNISDQMIHRLER-RGSSYQCLI---NNADADQSENSKKN-----EKTSSPVIPDDFLCPISLEVMRDPVIVATGQTYERSYIQRWIDCGNTKCPKTQQKLQNLTLTPNYVLRSLITQWCITHNVEQPTALTSGKVKRSDGTFSDVSREIAAIESLVRKLSSRSIEECRAAVSEIRSLSKRSTDNRILIGEAGAIPILVSLLTSDDGITQNNSITSILNLSIYEQNKGLIMLAGAIPSIVQVLRSGSMETKENAAATLFSLSLADENKIIIGASGAIPALVQLFQNGSSRGKKDAAAALFNLCIYQGNKGRAVRAGIITALLKMLTDTSCCMVDEALTILSVLASHQEAKAAIVQASTIPALIDLLRTGLPRNKEHAAAILLSLCKRDTENLACISRLGAVIPLTELVKSGTERAKRKATSLLEHLQK 633
MAGGDA + G L L++D ++S FGGPFKKDC+DL+RR+ALL+HL +E+RDFE PLD + SS DLT+ I+A KRL+ AAD FD KIS + AKK AFQFQC+TWKLE+ L + PYDQ +ISEEVQEQV+LVR QL RAT+RY G T LSRA SQ L++E+D L R++ L VE+ G+IDH V V N S+ + ++Q+ H E R SS + N D N+ N +K SPV+PDDFLCPISLE+MRDPVIVATGQTYER+YIQRWIDCGNT CPKT+QKLQN TLTPNYVLRSL+TQWC HN+E+PT L +G++K+SDG+F DVS +I AIE++VRKLSSRSIEE RAAV+EIRSLSKRSTDNRILI EAGAIP+LVSLLT++DG+TQ N++TSILNLSIYE NKGLIMLA AIPS+VQVLR+GSME +ENAAATLFSLSLADENKIIIGASGAI ALV+L Q+GS+RGKKDAA ALFNLCIYQGNKGRAVRAGIITALLKML+D+S CMVDEALTILSVLAS+QEAK AIV+ASTIP LIDLLRTGLPRNKE+AAAILLSLCKRD ENL C+SRLGAVIPL+EL KSGTERAKRKATSLLEHL+K
Sbjct: 1 MAGGDAASVAG---DALRLVRDVAQLSEARFGGPFKKDCTDLSRRVALLAHLFDEIRDFEASSRPLDSTASSSASFSWFSDLTLTIQAVKRLLSAADNFDSKISSDVPAKKIAFQFQCVTWKLEKTLGNLPYDQFDISEEVQEQVELVRAQLERATKRYGGRSTT--LSRASSQPVLNQEIDMQPLNRRVMGTLHVENIGNIDHEVKVRVAPVPKGNGSRRHNANQISHESEMPRNSSASTEVHPQNGVDESGELNTTNNILEESKKADSPVVPDDFLCPISLEIMRDPVIVATGQTYERAYIQRWIDCGNTTCPKTRQKLQNHTLTPNYVLRSLVTQWCAKHNIERPTTLINGRIKKSDGSFRDVSGDIPAIEAIVRKLSSRSIEEQRAAVAEIRSLSKRSTDNRILIAEAGAIPLLVSLLTAEDGLTQENAVTSILNLSIYENNKGLIMLANAIPSVVQVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIAALVELLQSGSTRGKKDAATALFNLCIYQGNKGRAVRAGIITALLKMLSDSSNCMVDEALTILSVLASYQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLSLCKRDAENLGCLSRLGAVIPLSELAKSGTERAKRKATSLLEHLRK 643
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZM13 | E-Value: 0.000e+0, PID: 70.66 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A4S4EV80 | E-Value: 0.000e+0, PID: 70.71 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A2R6PGT0 | E-Value: 0.000e+0, PID: 69.92 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5B6ZPT7 | E-Value: 0.000e+0, PID: 70.40 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A7J0DD27 | E-Value: 0.000e+0, PID: 68.85 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6I9STT0 | E-Value: 0.000e+0, PID: 70.55 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A2R6PB25 | E-Value: 0.000e+0, PID: 68.65 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6I9SY73 | E-Value: 0.000e+0, PID: 68.66 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A068TZI1 | E-Value: 0.000e+0, PID: 67.53 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A834GJW0 | E-Value: 0.000e+0, PID: 68.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7133... [more] |
Analysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. | |
This analysis is a blastp search of all of the NCBI Daucus carota subsp. sativus Annotation Release 100 polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove DCAR gene predictions from DCAR V1.0 Gene Prediction. |